1c4762a1bSJed Brown static char help[] = "Performs adjoint sensitivity analysis for the van der Pol equation.\n"; 2c4762a1bSJed Brown 3c4762a1bSJed Brown /* ------------------------------------------------------------------------ 4c4762a1bSJed Brown 5c4762a1bSJed Brown This program solves the van der Pol DAE ODE equivalent 6c4762a1bSJed Brown [ u_1' ] = [ u_2 ] (2) 7c4762a1bSJed Brown [ u_2' ] [ \mu ((1 - u_1^2) u_2 - u_1) ] 8c4762a1bSJed Brown on the domain 0 <= x <= 1, with the boundary conditions 9c4762a1bSJed Brown u_1(0) = 2, u_2(0) = - 2/3 +10/(81*\mu) - 292/(2187*\mu^2), 10c4762a1bSJed Brown and 11c4762a1bSJed Brown \mu = 10^6 ( y'(0) ~ -0.6666665432100101)., 12c4762a1bSJed Brown and computes the sensitivities of the final solution w.r.t. initial conditions and parameter \mu with the implicit theta method and its discrete adjoint. 13c4762a1bSJed Brown 14*80ab5e31SHong Zhang In an IMEX setting, we can split (2) by component, 15*80ab5e31SHong Zhang 16*80ab5e31SHong Zhang [ u_1' ] = [ u_2 ] + [ 0 ] 17*80ab5e31SHong Zhang [ u_2' ] [ 0 ] [ \mu ((1 - u_1^2) u_2 - u_1) ] 18*80ab5e31SHong Zhang 19*80ab5e31SHong Zhang where 20*80ab5e31SHong Zhang 21*80ab5e31SHong Zhang [ G(u,t) ] = [ u_2 ] 22*80ab5e31SHong Zhang [ 0 ] 23*80ab5e31SHong Zhang 24*80ab5e31SHong Zhang and 25*80ab5e31SHong Zhang 26*80ab5e31SHong Zhang [ F(u',u,t) ] = [ u_1' ] - [ 0 ] 27*80ab5e31SHong Zhang [ u_2' ] [ \mu ((1 - u_1^2) u_2 - u_1) ] 28*80ab5e31SHong Zhang 29c4762a1bSJed Brown Notes: 30c4762a1bSJed Brown This code demonstrates the TSAdjoint interface to a DAE system. 31c4762a1bSJed Brown 32c4762a1bSJed Brown The user provides the implicit right-hand-side function 335ab1ac2bSHong Zhang [ F(u',u,t) ] = [u' - f(u,t)] = [ u_1'] - [ u_2 ] 34c4762a1bSJed Brown [ u_2'] [ \mu ((1-u_1^2)u_2-u_1) ] 35c4762a1bSJed Brown 365ab1ac2bSHong Zhang and the Jacobian of F (from the PETSc user manual) 37c4762a1bSJed Brown 385ab1ac2bSHong Zhang dF dF 395ab1ac2bSHong Zhang J(F) = a * -- + -- 40c4762a1bSJed Brown du' du 41c4762a1bSJed Brown 425ab1ac2bSHong Zhang and the JacobianP of the explicit right-hand side of (2) f(u,t) ( which is equivalent to -F(0,u,t)). 43c4762a1bSJed Brown df [ 0 ] 44c4762a1bSJed Brown -- = [ ] 45c4762a1bSJed Brown dp [ (1 - u_1^2) u_2 - u_1 ]. 46c4762a1bSJed Brown 47c4762a1bSJed Brown See ex20.c for more details on the Jacobian. 48c4762a1bSJed Brown 49c4762a1bSJed Brown ------------------------------------------------------------------------- */ 50c4762a1bSJed Brown #include <petscts.h> 51c4762a1bSJed Brown #include <petsctao.h> 52c4762a1bSJed Brown 53c4762a1bSJed Brown typedef struct _n_User *User; 54c4762a1bSJed Brown struct _n_User { 55c4762a1bSJed Brown PetscReal mu; 56c4762a1bSJed Brown PetscReal next_output; 57*80ab5e31SHong Zhang PetscBool imex; 58c4762a1bSJed Brown /* Sensitivity analysis support */ 59c4762a1bSJed Brown PetscInt steps; 60c4762a1bSJed Brown PetscReal ftime; 61*80ab5e31SHong Zhang Mat A; /* IJacobian matrix */ 62*80ab5e31SHong Zhang Mat B; /* RHSJacobian matrix */ 63*80ab5e31SHong Zhang Mat Jacp; /* IJacobianP matrix */ 64*80ab5e31SHong Zhang Mat Jacprhs; /* RHSJacobianP matrix */ 65c4762a1bSJed Brown Vec U, lambda[2], mup[2]; /* adjoint variables */ 66c4762a1bSJed Brown }; 67c4762a1bSJed Brown 68c4762a1bSJed Brown /* ----------------------- Explicit form of the ODE -------------------- */ 69c4762a1bSJed Brown 70d71ae5a4SJacob Faibussowitsch static PetscErrorCode RHSFunction(TS ts, PetscReal t, Vec U, Vec F, void *ctx) 71d71ae5a4SJacob Faibussowitsch { 72c4762a1bSJed Brown User user = (User)ctx; 73c4762a1bSJed Brown PetscScalar *f; 74c4762a1bSJed Brown const PetscScalar *u; 75c4762a1bSJed Brown 76c4762a1bSJed Brown PetscFunctionBeginUser; 779566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(U, &u)); 789566063dSJacob Faibussowitsch PetscCall(VecGetArray(F, &f)); 79c4762a1bSJed Brown f[0] = u[1]; 80*80ab5e31SHong Zhang if (user->imex) { 81*80ab5e31SHong Zhang f[1] = 0.0; 82*80ab5e31SHong Zhang } else { 83c4762a1bSJed Brown f[1] = user->mu * ((1. - u[0] * u[0]) * u[1] - u[0]); 84*80ab5e31SHong Zhang } 859566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(U, &u)); 869566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(F, &f)); 873ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 88c4762a1bSJed Brown } 89c4762a1bSJed Brown 90d71ae5a4SJacob Faibussowitsch static PetscErrorCode RHSJacobian(TS ts, PetscReal t, Vec U, Mat A, Mat B, void *ctx) 91d71ae5a4SJacob Faibussowitsch { 92c4762a1bSJed Brown User user = (User)ctx; 93c4762a1bSJed Brown PetscReal mu = user->mu; 94c4762a1bSJed Brown PetscInt rowcol[] = {0, 1}; 95c4762a1bSJed Brown PetscScalar J[2][2]; 96c4762a1bSJed Brown const PetscScalar *u; 97c4762a1bSJed Brown 98c4762a1bSJed Brown PetscFunctionBeginUser; 999566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(U, &u)); 100c4762a1bSJed Brown J[0][0] = 0; 101c4762a1bSJed Brown J[0][1] = 1.0; 102*80ab5e31SHong Zhang if (user->imex) { 103*80ab5e31SHong Zhang J[1][0] = 0.0; 104*80ab5e31SHong Zhang J[1][1] = 0.0; 105*80ab5e31SHong Zhang } else { 106*80ab5e31SHong Zhang J[1][0] = -mu * (2.0 * u[1] * u[0] + 1.); 107c4762a1bSJed Brown J[1][1] = mu * (1.0 - u[0] * u[0]); 108*80ab5e31SHong Zhang } 1099566063dSJacob Faibussowitsch PetscCall(MatSetValues(A, 2, rowcol, 2, rowcol, &J[0][0], INSERT_VALUES)); 1109566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 1119566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 112c4762a1bSJed Brown if (A != B) { 1139566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 1149566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 115c4762a1bSJed Brown } 1169566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(U, &u)); 1173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 118c4762a1bSJed Brown } 119c4762a1bSJed Brown 120c4762a1bSJed Brown /* ----------------------- Implicit form of the ODE -------------------- */ 121c4762a1bSJed Brown 122d71ae5a4SJacob Faibussowitsch static PetscErrorCode IFunction(TS ts, PetscReal t, Vec U, Vec Udot, Vec F, void *ctx) 123d71ae5a4SJacob Faibussowitsch { 124c4762a1bSJed Brown User user = (User)ctx; 125c4762a1bSJed Brown const PetscScalar *u, *udot; 126c4762a1bSJed Brown PetscScalar *f; 127c4762a1bSJed Brown 128c4762a1bSJed Brown PetscFunctionBeginUser; 1299566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(U, &u)); 1309566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(Udot, &udot)); 1319566063dSJacob Faibussowitsch PetscCall(VecGetArray(F, &f)); 132*80ab5e31SHong Zhang if (user->imex) { 133*80ab5e31SHong Zhang f[0] = udot[0]; 134*80ab5e31SHong Zhang } else { 135c4762a1bSJed Brown f[0] = udot[0] - u[1]; 136*80ab5e31SHong Zhang } 137c4762a1bSJed Brown f[1] = udot[1] - user->mu * ((1.0 - u[0] * u[0]) * u[1] - u[0]); 1389566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(U, &u)); 1399566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(Udot, &udot)); 1409566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(F, &f)); 1413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 142c4762a1bSJed Brown } 143c4762a1bSJed Brown 144d71ae5a4SJacob Faibussowitsch static PetscErrorCode IJacobian(TS ts, PetscReal t, Vec U, Vec Udot, PetscReal a, Mat A, Mat B, void *ctx) 145d71ae5a4SJacob Faibussowitsch { 146c4762a1bSJed Brown User user = (User)ctx; 147c4762a1bSJed Brown PetscInt rowcol[] = {0, 1}; 148c4762a1bSJed Brown PetscScalar J[2][2]; 149c4762a1bSJed Brown const PetscScalar *u; 150c4762a1bSJed Brown 151c4762a1bSJed Brown PetscFunctionBeginUser; 1529566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(U, &u)); 153c4762a1bSJed Brown 154*80ab5e31SHong Zhang if (user->imex) { 155*80ab5e31SHong Zhang J[0][0] = a; 156*80ab5e31SHong Zhang J[0][1] = 0.0; 157*80ab5e31SHong Zhang } else { 1589371c9d4SSatish Balay J[0][0] = a; 1599371c9d4SSatish Balay J[0][1] = -1.0; 160*80ab5e31SHong Zhang } 1619371c9d4SSatish Balay J[1][0] = user->mu * (2.0 * u[0] * u[1] + 1.0); 1629371c9d4SSatish Balay J[1][1] = a - user->mu * (1.0 - u[0] * u[0]); 163c4762a1bSJed Brown 1649566063dSJacob Faibussowitsch PetscCall(MatSetValues(B, 2, rowcol, 2, rowcol, &J[0][0], INSERT_VALUES)); 1659566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(U, &u)); 166c4762a1bSJed Brown 1679566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 1689566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 169c4762a1bSJed Brown if (B && A != B) { 1709566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 1719566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 172c4762a1bSJed Brown } 1733ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 174c4762a1bSJed Brown } 175c4762a1bSJed Brown 176*80ab5e31SHong Zhang static PetscErrorCode IJacobianP(TS ts, PetscReal t, Vec U, Vec Udot, PetscReal a, Mat A, void *ctx) 177d71ae5a4SJacob Faibussowitsch { 178c4762a1bSJed Brown PetscInt row[] = {0, 1}, col[] = {0}; 179c4762a1bSJed Brown PetscScalar J[2][1]; 180c4762a1bSJed Brown const PetscScalar *u; 181c4762a1bSJed Brown 182c4762a1bSJed Brown PetscFunctionBeginUser; 1839566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(U, &u)); 184c4762a1bSJed Brown J[0][0] = 0; 185*80ab5e31SHong Zhang J[1][0] = -((1.0 - u[0] * u[0]) * u[1] - u[0]); 186*80ab5e31SHong Zhang PetscCall(MatSetValues(A, 2, row, 1, col, &J[0][0], INSERT_VALUES)); 187*80ab5e31SHong Zhang PetscCall(VecRestoreArrayRead(U, &u)); 188*80ab5e31SHong Zhang PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 189*80ab5e31SHong Zhang PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 190*80ab5e31SHong Zhang PetscFunctionReturn(PETSC_SUCCESS); 191*80ab5e31SHong Zhang } 192*80ab5e31SHong Zhang 193*80ab5e31SHong Zhang static PetscErrorCode RHSJacobianP(TS ts, PetscReal t, Vec U, Mat A, void *ctx) 194*80ab5e31SHong Zhang { 195*80ab5e31SHong Zhang User user = (User)ctx; 196*80ab5e31SHong Zhang 197*80ab5e31SHong Zhang PetscFunctionBeginUser; 198*80ab5e31SHong Zhang if (!user->imex) { 199*80ab5e31SHong Zhang PetscInt row[] = {0, 1}, col[] = {0}; 200*80ab5e31SHong Zhang PetscScalar J[2][1]; 201*80ab5e31SHong Zhang const PetscScalar *u; 202*80ab5e31SHong Zhang PetscCall(VecGetArrayRead(U, &u)); 203*80ab5e31SHong Zhang J[0][0] = 0; 204c4762a1bSJed Brown J[1][0] = (1. - u[0] * u[0]) * u[1] - u[0]; 2059566063dSJacob Faibussowitsch PetscCall(MatSetValues(A, 2, row, 1, col, &J[0][0], INSERT_VALUES)); 2069566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 2079566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 2089566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(U, &u)); 209*80ab5e31SHong Zhang } 2103ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 211c4762a1bSJed Brown } 212c4762a1bSJed Brown 213c4762a1bSJed Brown /* Monitor timesteps and use interpolation to output at integer multiples of 0.1 */ 214d71ae5a4SJacob Faibussowitsch static PetscErrorCode Monitor(TS ts, PetscInt step, PetscReal t, Vec U, void *ctx) 215d71ae5a4SJacob Faibussowitsch { 216c4762a1bSJed Brown const PetscScalar *u; 217c4762a1bSJed Brown PetscReal tfinal, dt; 218c4762a1bSJed Brown User user = (User)ctx; 219c4762a1bSJed Brown Vec interpolatedU; 220c4762a1bSJed Brown 221c4762a1bSJed Brown PetscFunctionBeginUser; 2229566063dSJacob Faibussowitsch PetscCall(TSGetTimeStep(ts, &dt)); 2239566063dSJacob Faibussowitsch PetscCall(TSGetMaxTime(ts, &tfinal)); 224c4762a1bSJed Brown 225c4762a1bSJed Brown while (user->next_output <= t && user->next_output <= tfinal) { 2269566063dSJacob Faibussowitsch PetscCall(VecDuplicate(U, &interpolatedU)); 2279566063dSJacob Faibussowitsch PetscCall(TSInterpolate(ts, user->next_output, interpolatedU)); 2289566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(interpolatedU, &u)); 2299371c9d4SSatish Balay PetscCall(PetscPrintf(PETSC_COMM_WORLD, "[%g] %" PetscInt_FMT " TS %g (dt = %g) X %g %g\n", (double)user->next_output, step, (double)t, (double)dt, (double)PetscRealPart(u[0]), (double)PetscRealPart(u[1]))); 2309566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(interpolatedU, &u)); 2319566063dSJacob Faibussowitsch PetscCall(VecDestroy(&interpolatedU)); 232c4762a1bSJed Brown user->next_output += 0.1; 233c4762a1bSJed Brown } 2343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 235c4762a1bSJed Brown } 236c4762a1bSJed Brown 237d71ae5a4SJacob Faibussowitsch int main(int argc, char **argv) 238d71ae5a4SJacob Faibussowitsch { 239c4762a1bSJed Brown TS ts; 240c4762a1bSJed Brown PetscBool monitor = PETSC_FALSE, implicitform = PETSC_TRUE; 241c4762a1bSJed Brown PetscScalar *x_ptr, *y_ptr, derp; 242c4762a1bSJed Brown PetscMPIInt size; 243c4762a1bSJed Brown struct _n_User user; 244c4762a1bSJed Brown 245c4762a1bSJed Brown /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 246c4762a1bSJed Brown Initialize program 247c4762a1bSJed Brown - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */ 248327415f7SBarry Smith PetscFunctionBeginUser; 2499566063dSJacob Faibussowitsch PetscCall(PetscInitialize(&argc, &argv, NULL, help)); 2509566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PETSC_COMM_WORLD, &size)); 2513c633725SBarry Smith PetscCheck(size == 1, PETSC_COMM_WORLD, PETSC_ERR_WRONG_MPI_SIZE, "This is a uniprocessor example only!"); 252c4762a1bSJed Brown 253c4762a1bSJed Brown /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 254c4762a1bSJed Brown Set runtime options 255c4762a1bSJed Brown - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */ 256c4762a1bSJed Brown user.next_output = 0.0; 257c4762a1bSJed Brown user.mu = 1.0e3; 258c4762a1bSJed Brown user.steps = 0; 259c4762a1bSJed Brown user.ftime = 0.5; 260*80ab5e31SHong Zhang user.imex = PETSC_FALSE; 2619566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetBool(NULL, NULL, "-monitor", &monitor, NULL)); 2629566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetReal(NULL, NULL, "-mu", &user.mu, NULL)); 2639566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetBool(NULL, NULL, "-implicitform", &implicitform, NULL)); 264*80ab5e31SHong Zhang PetscCall(PetscOptionsGetBool(NULL, NULL, "-imexform", &user.imex, NULL)); 265c4762a1bSJed Brown 266c4762a1bSJed Brown /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 267c4762a1bSJed Brown Create necessary matrix and vectors, solve same ODE on every process 268c4762a1bSJed Brown - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */ 2699566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_WORLD, &user.A)); 2709566063dSJacob Faibussowitsch PetscCall(MatSetSizes(user.A, PETSC_DECIDE, PETSC_DECIDE, 2, 2)); 2719566063dSJacob Faibussowitsch PetscCall(MatSetFromOptions(user.A)); 2729566063dSJacob Faibussowitsch PetscCall(MatSetUp(user.A)); 2739566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(user.A, &user.U, NULL)); 274*80ab5e31SHong Zhang PetscCall(MatDuplicate(user.A, MAT_DO_NOT_COPY_VALUES, &user.B)); 2759566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_WORLD, &user.Jacp)); 2769566063dSJacob Faibussowitsch PetscCall(MatSetSizes(user.Jacp, PETSC_DECIDE, PETSC_DECIDE, 2, 1)); 2779566063dSJacob Faibussowitsch PetscCall(MatSetFromOptions(user.Jacp)); 2789566063dSJacob Faibussowitsch PetscCall(MatSetUp(user.Jacp)); 279*80ab5e31SHong Zhang PetscCall(MatDuplicate(user.Jacp, MAT_DO_NOT_COPY_VALUES, &user.Jacprhs)); 280*80ab5e31SHong Zhang PetscCall(MatZeroEntries(user.Jacprhs)); 281c4762a1bSJed Brown 282c4762a1bSJed Brown /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 283c4762a1bSJed Brown Create timestepping solver context 284c4762a1bSJed Brown - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */ 2859566063dSJacob Faibussowitsch PetscCall(TSCreate(PETSC_COMM_WORLD, &ts)); 2869566063dSJacob Faibussowitsch PetscCall(TSSetEquationType(ts, TS_EQ_ODE_EXPLICIT)); /* less Jacobian evaluations when adjoint BEuler is used, otherwise no effect */ 287*80ab5e31SHong Zhang if (user.imex) { 288*80ab5e31SHong Zhang PetscCall(TSSetIFunction(ts, NULL, IFunction, &user)); 289*80ab5e31SHong Zhang PetscCall(TSSetIJacobian(ts, user.A, user.A, IJacobian, &user)); 290*80ab5e31SHong Zhang PetscCall(TSSetIJacobianP(ts, user.Jacp, IJacobianP, &user)); 291*80ab5e31SHong Zhang PetscCall(TSSetRHSFunction(ts, NULL, RHSFunction, &user)); 292*80ab5e31SHong Zhang PetscCall(TSSetRHSJacobian(ts, user.B, NULL, RHSJacobian, &user)); 293*80ab5e31SHong Zhang PetscCall(TSSetRHSJacobianP(ts, user.Jacprhs, NULL, &user)); 294*80ab5e31SHong Zhang PetscCall(TSSetType(ts, TSARKIMEX)); 295*80ab5e31SHong Zhang } else { 296c4762a1bSJed Brown if (implicitform) { 2979566063dSJacob Faibussowitsch PetscCall(TSSetIFunction(ts, NULL, IFunction, &user)); 2989566063dSJacob Faibussowitsch PetscCall(TSSetIJacobian(ts, user.A, user.A, IJacobian, &user)); 299*80ab5e31SHong Zhang PetscCall(TSSetIJacobianP(ts, user.Jacp, IJacobianP, &user)); 3009566063dSJacob Faibussowitsch PetscCall(TSSetType(ts, TSCN)); 301c4762a1bSJed Brown } else { 3029566063dSJacob Faibussowitsch PetscCall(TSSetRHSFunction(ts, NULL, RHSFunction, &user)); 3039566063dSJacob Faibussowitsch PetscCall(TSSetRHSJacobian(ts, user.A, user.A, RHSJacobian, &user)); 304*80ab5e31SHong Zhang PetscCall(TSSetRHSJacobianP(ts, user.Jacp, RHSJacobianP, &user)); 3059566063dSJacob Faibussowitsch PetscCall(TSSetType(ts, TSRK)); 306c4762a1bSJed Brown } 307*80ab5e31SHong Zhang } 3089566063dSJacob Faibussowitsch PetscCall(TSSetMaxTime(ts, user.ftime)); 3099566063dSJacob Faibussowitsch PetscCall(TSSetTimeStep(ts, 0.001)); 3109566063dSJacob Faibussowitsch PetscCall(TSSetExactFinalTime(ts, TS_EXACTFINALTIME_MATCHSTEP)); 3119566063dSJacob Faibussowitsch if (monitor) PetscCall(TSMonitorSet(ts, Monitor, &user, NULL)); 312c4762a1bSJed Brown 313c4762a1bSJed Brown /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 314c4762a1bSJed Brown Set initial conditions 315c4762a1bSJed Brown - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */ 3169566063dSJacob Faibussowitsch PetscCall(VecGetArray(user.U, &x_ptr)); 317c4762a1bSJed Brown x_ptr[0] = 2.0; 318c4762a1bSJed Brown x_ptr[1] = -2.0 / 3.0 + 10.0 / (81.0 * user.mu) - 292.0 / (2187.0 * user.mu * user.mu); 3199566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(user.U, &x_ptr)); 3209566063dSJacob Faibussowitsch PetscCall(TSSetTimeStep(ts, 0.001)); 321c4762a1bSJed Brown 322c4762a1bSJed Brown /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 323c4762a1bSJed Brown Save trajectory of solution so that TSAdjointSolve() may be used 324c4762a1bSJed Brown - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */ 3259566063dSJacob Faibussowitsch PetscCall(TSSetSaveTrajectory(ts)); 326c4762a1bSJed Brown 327c4762a1bSJed Brown /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 328c4762a1bSJed Brown Set runtime options 329c4762a1bSJed Brown - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */ 3309566063dSJacob Faibussowitsch PetscCall(TSSetFromOptions(ts)); 331c4762a1bSJed Brown 3329566063dSJacob Faibussowitsch PetscCall(TSSolve(ts, user.U)); 3339566063dSJacob Faibussowitsch PetscCall(TSGetSolveTime(ts, &user.ftime)); 3349566063dSJacob Faibussowitsch PetscCall(TSGetStepNumber(ts, &user.steps)); 335c4762a1bSJed Brown 336c4762a1bSJed Brown /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 337c4762a1bSJed Brown Adjoint model starts here 338c4762a1bSJed Brown - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */ 3399566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(user.A, &user.lambda[0], NULL)); 340c4762a1bSJed Brown /* Set initial conditions for the adjoint integration */ 3419566063dSJacob Faibussowitsch PetscCall(VecGetArray(user.lambda[0], &y_ptr)); 3429371c9d4SSatish Balay y_ptr[0] = 1.0; 3439371c9d4SSatish Balay y_ptr[1] = 0.0; 3449566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(user.lambda[0], &y_ptr)); 3459566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(user.A, &user.lambda[1], NULL)); 3469566063dSJacob Faibussowitsch PetscCall(VecGetArray(user.lambda[1], &y_ptr)); 3479371c9d4SSatish Balay y_ptr[0] = 0.0; 3489371c9d4SSatish Balay y_ptr[1] = 1.0; 3499566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(user.lambda[1], &y_ptr)); 350c4762a1bSJed Brown 3519566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(user.Jacp, &user.mup[0], NULL)); 3529566063dSJacob Faibussowitsch PetscCall(VecGetArray(user.mup[0], &x_ptr)); 353c4762a1bSJed Brown x_ptr[0] = 0.0; 3549566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(user.mup[0], &x_ptr)); 3559566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(user.Jacp, &user.mup[1], NULL)); 3569566063dSJacob Faibussowitsch PetscCall(VecGetArray(user.mup[1], &x_ptr)); 357c4762a1bSJed Brown x_ptr[0] = 0.0; 3589566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(user.mup[1], &x_ptr)); 359c4762a1bSJed Brown 3609566063dSJacob Faibussowitsch PetscCall(TSSetCostGradients(ts, 2, user.lambda, user.mup)); 361c4762a1bSJed Brown 3629566063dSJacob Faibussowitsch PetscCall(TSAdjointSolve(ts)); 363c4762a1bSJed Brown 3649566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_WORLD, "\n sensitivity wrt initial conditions: d[y(tf)]/d[y0] d[y(tf)]/d[z0]\n")); 3659566063dSJacob Faibussowitsch PetscCall(VecView(user.lambda[0], PETSC_VIEWER_STDOUT_WORLD)); 3669566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_WORLD, "\n sensitivity wrt initial conditions: d[z(tf)]/d[y0] d[z(tf)]/d[z0]\n")); 3679566063dSJacob Faibussowitsch PetscCall(VecView(user.lambda[1], PETSC_VIEWER_STDOUT_WORLD)); 368c4762a1bSJed Brown 3699566063dSJacob Faibussowitsch PetscCall(VecGetArray(user.mup[0], &x_ptr)); 3709566063dSJacob Faibussowitsch PetscCall(VecGetArray(user.lambda[0], &y_ptr)); 371c4762a1bSJed Brown derp = y_ptr[1] * (-10.0 / (81.0 * user.mu * user.mu) + 2.0 * 292.0 / (2187.0 * user.mu * user.mu * user.mu)) + x_ptr[0]; 3729566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(user.mup[0], &x_ptr)); 3739566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(user.lambda[0], &y_ptr)); 3749566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_WORLD, "\n sensitivity wrt parameters: d[y(tf)]/d[mu]\n%g\n", (double)PetscRealPart(derp))); 375c4762a1bSJed Brown 3769566063dSJacob Faibussowitsch PetscCall(VecGetArray(user.mup[1], &x_ptr)); 3779566063dSJacob Faibussowitsch PetscCall(VecGetArray(user.lambda[1], &y_ptr)); 378c4762a1bSJed Brown derp = y_ptr[1] * (-10.0 / (81.0 * user.mu * user.mu) + 2.0 * 292.0 / (2187.0 * user.mu * user.mu * user.mu)) + x_ptr[0]; 3799566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(user.mup[1], &x_ptr)); 3809566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(user.lambda[1], &y_ptr)); 3819566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_WORLD, "\n sensivitity wrt parameters: d[z(tf)]/d[mu]\n%g\n", (double)PetscRealPart(derp))); 382c4762a1bSJed Brown 383c4762a1bSJed Brown /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 384c4762a1bSJed Brown Free work space. All PETSc objects should be destroyed when they 385c4762a1bSJed Brown are no longer needed. 386c4762a1bSJed Brown - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */ 3879566063dSJacob Faibussowitsch PetscCall(MatDestroy(&user.A)); 388*80ab5e31SHong Zhang PetscCall(MatDestroy(&user.B)); 3899566063dSJacob Faibussowitsch PetscCall(MatDestroy(&user.Jacp)); 390*80ab5e31SHong Zhang PetscCall(MatDestroy(&user.Jacprhs)); 3919566063dSJacob Faibussowitsch PetscCall(VecDestroy(&user.U)); 3929566063dSJacob Faibussowitsch PetscCall(VecDestroy(&user.lambda[0])); 3939566063dSJacob Faibussowitsch PetscCall(VecDestroy(&user.lambda[1])); 3949566063dSJacob Faibussowitsch PetscCall(VecDestroy(&user.mup[0])); 3959566063dSJacob Faibussowitsch PetscCall(VecDestroy(&user.mup[1])); 3969566063dSJacob Faibussowitsch PetscCall(TSDestroy(&ts)); 397c4762a1bSJed Brown 3989566063dSJacob Faibussowitsch PetscCall(PetscFinalize()); 399b122ec5aSJacob Faibussowitsch return 0; 400c4762a1bSJed Brown } 401c4762a1bSJed Brown 402c4762a1bSJed Brown /*TEST 403c4762a1bSJed Brown 404c4762a1bSJed Brown test: 405c4762a1bSJed Brown requires: revolve 406c4762a1bSJed Brown args: -monitor 0 -ts_type theta -ts_theta_endpoint -ts_theta_theta 0.5 -viewer_binary_skip_info -ts_dt 0.001 -mu 100000 407c4762a1bSJed Brown 408c4762a1bSJed Brown test: 409c4762a1bSJed Brown suffix: 2 410c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_solution_only 411c4762a1bSJed Brown 412c4762a1bSJed Brown test: 413c4762a1bSJed Brown suffix: 3 414c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_solution_only 0 415c4762a1bSJed Brown output_file: output/ex20adj_2.out 416c4762a1bSJed Brown 417c4762a1bSJed Brown test: 418c4762a1bSJed Brown suffix: 4 419c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_stride 5 -ts_trajectory_solution_only -ts_trajectory_save_stack 420c4762a1bSJed Brown output_file: output/ex20adj_2.out 421c4762a1bSJed Brown 422c4762a1bSJed Brown test: 423c4762a1bSJed Brown suffix: 5 424c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_stride 5 -ts_trajectory_solution_only 0 -ts_trajectory_save_stack 425c4762a1bSJed Brown output_file: output/ex20adj_2.out 426c4762a1bSJed Brown 427c4762a1bSJed Brown test: 428c4762a1bSJed Brown suffix: 6 429c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_stride 5 -ts_trajectory_solution_only -ts_trajectory_save_stack 0 430c4762a1bSJed Brown output_file: output/ex20adj_2.out 431c4762a1bSJed Brown 432c4762a1bSJed Brown test: 433c4762a1bSJed Brown suffix: 7 434c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_stride 5 -ts_trajectory_solution_only 0 -ts_trajectory_save_stack 0 435c4762a1bSJed Brown output_file: output/ex20adj_2.out 436c4762a1bSJed Brown 437c4762a1bSJed Brown test: 438c4762a1bSJed Brown suffix: 8 43960f0b76eSHong Zhang requires: revolve !cams 440c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 5 -ts_trajectory_solution_only -ts_trajectory_monitor 441c4762a1bSJed Brown output_file: output/ex20adj_3.out 442c4762a1bSJed Brown 443c4762a1bSJed Brown test: 444c4762a1bSJed Brown suffix: 9 44560f0b76eSHong Zhang requires: revolve !cams 446c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 5 -ts_trajectory_solution_only 0 -ts_trajectory_monitor 447c4762a1bSJed Brown output_file: output/ex20adj_4.out 448c4762a1bSJed Brown 449c4762a1bSJed Brown test: 450c4762a1bSJed Brown requires: revolve 451c4762a1bSJed Brown suffix: 10 452c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 5 -ts_trajectory_revolve_online -ts_trajectory_solution_only 453c4762a1bSJed Brown output_file: output/ex20adj_2.out 454c4762a1bSJed Brown 455c4762a1bSJed Brown test: 456c4762a1bSJed Brown requires: revolve 457c4762a1bSJed Brown suffix: 11 458c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 5 -ts_trajectory_revolve_online -ts_trajectory_solution_only 0 459c4762a1bSJed Brown output_file: output/ex20adj_2.out 460c4762a1bSJed Brown 461c4762a1bSJed Brown test: 462c4762a1bSJed Brown suffix: 12 463c4762a1bSJed Brown requires: revolve 464c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_max_cps_disk 8 -ts_trajectory_solution_only 465c4762a1bSJed Brown output_file: output/ex20adj_2.out 466c4762a1bSJed Brown 467c4762a1bSJed Brown test: 468c4762a1bSJed Brown suffix: 13 469c4762a1bSJed Brown requires: revolve 470c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_max_cps_disk 8 -ts_trajectory_solution_only 0 471c4762a1bSJed Brown output_file: output/ex20adj_2.out 472c4762a1bSJed Brown 473c4762a1bSJed Brown test: 474c4762a1bSJed Brown suffix: 14 475c4762a1bSJed Brown requires: revolve 476c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_stride 5 -ts_trajectory_solution_only -ts_trajectory_save_stack 477c4762a1bSJed Brown output_file: output/ex20adj_2.out 478c4762a1bSJed Brown 479c4762a1bSJed Brown test: 480c4762a1bSJed Brown suffix: 15 481c4762a1bSJed Brown requires: revolve 482c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_stride 5 -ts_trajectory_solution_only -ts_trajectory_save_stack 0 483c4762a1bSJed Brown output_file: output/ex20adj_2.out 484c4762a1bSJed Brown 485c4762a1bSJed Brown test: 486c4762a1bSJed Brown suffix: 16 487c4762a1bSJed Brown requires: revolve 488c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_stride 5 -ts_trajectory_solution_only 0 -ts_trajectory_save_stack 489c4762a1bSJed Brown output_file: output/ex20adj_2.out 490c4762a1bSJed Brown 491c4762a1bSJed Brown test: 492c4762a1bSJed Brown suffix: 17 493c4762a1bSJed Brown requires: revolve 494c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_stride 5 -ts_trajectory_solution_only 0 -ts_trajectory_save_stack 0 495c4762a1bSJed Brown output_file: output/ex20adj_2.out 496c4762a1bSJed Brown 497c4762a1bSJed Brown test: 498c4762a1bSJed Brown suffix: 18 499c4762a1bSJed Brown requires: revolve 500c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_max_cps_disk 8 -ts_trajectory_stride 5 -ts_trajectory_solution_only -ts_trajectory_save_stack 501c4762a1bSJed Brown output_file: output/ex20adj_2.out 502c4762a1bSJed Brown 503c4762a1bSJed Brown test: 504c4762a1bSJed Brown suffix: 19 505c4762a1bSJed Brown requires: revolve 506c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_max_cps_disk 8 -ts_trajectory_stride 5 -ts_trajectory_solution_only 0 -ts_trajectory_save_stack 507c4762a1bSJed Brown output_file: output/ex20adj_2.out 508c4762a1bSJed Brown 509c4762a1bSJed Brown test: 510c4762a1bSJed Brown suffix: 20 511c4762a1bSJed Brown requires: revolve 512c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_max_cps_disk 8 -ts_trajectory_solution_only 0 513c4762a1bSJed Brown output_file: output/ex20adj_2.out 514c4762a1bSJed Brown 515c4762a1bSJed Brown test: 516c4762a1bSJed Brown suffix: 21 517c4762a1bSJed Brown requires: revolve 518c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_max_cps_disk 8 -ts_trajectory_stride 5 -ts_trajectory_solution_only 0 -ts_trajectory_save_stack 0 519c4762a1bSJed Brown output_file: output/ex20adj_2.out 520c4762a1bSJed Brown 521c4762a1bSJed Brown test: 522c4762a1bSJed Brown suffix: 22 523c4762a1bSJed Brown args: -ts_type beuler -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_solution_only 524c4762a1bSJed Brown output_file: output/ex20adj_2.out 525cc4f23bcSHong Zhang 526cc4f23bcSHong Zhang test: 527cc4f23bcSHong Zhang suffix: 23 528cc4f23bcSHong Zhang requires: cams 529533251d3SHong Zhang args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_units_ram 5 -ts_trajectory_solution_only -ts_trajectory_monitor -ts_trajectory_memory_type cams 53060f0b76eSHong Zhang output_file: output/ex20adj_5.out 531cc4f23bcSHong Zhang 532cc4f23bcSHong Zhang test: 533cc4f23bcSHong Zhang suffix: 24 534cc4f23bcSHong Zhang requires: cams 535533251d3SHong Zhang args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_units_ram 5 -ts_trajectory_solution_only 0 -ts_trajectory_monitor -ts_trajectory_memory_type cams 53660f0b76eSHong Zhang output_file: output/ex20adj_6.out 537cc4f23bcSHong Zhang 538*80ab5e31SHong Zhang test: 539*80ab5e31SHong Zhang suffix: 25 540*80ab5e31SHong Zhang args: -imexform -ts_max_steps 15 -ts_trajectory_type memory 541*80ab5e31SHong Zhang output_file: output/ex20adj_imex.out 542c4762a1bSJed Brown TEST*/ 543