xref: /petsc/src/ts/tutorials/ex20adj.c (revision 9371c9d470a9602b6d10a8bf50c9b2280a79e45a)
1c4762a1bSJed Brown static char help[] = "Performs adjoint sensitivity analysis for the van der Pol equation.\n";
2c4762a1bSJed Brown 
3c4762a1bSJed Brown /* ------------------------------------------------------------------------
4c4762a1bSJed Brown 
5c4762a1bSJed Brown    This program solves the van der Pol DAE ODE equivalent
6c4762a1bSJed Brown       [ u_1' ] = [          u_2                ]  (2)
7c4762a1bSJed Brown       [ u_2' ]   [ \mu ((1 - u_1^2) u_2 - u_1) ]
8c4762a1bSJed Brown    on the domain 0 <= x <= 1, with the boundary conditions
9c4762a1bSJed Brown        u_1(0) = 2, u_2(0) = - 2/3 +10/(81*\mu) - 292/(2187*\mu^2),
10c4762a1bSJed Brown    and
11c4762a1bSJed Brown        \mu = 10^6 ( y'(0) ~ -0.6666665432100101).,
12c4762a1bSJed Brown    and computes the sensitivities of the final solution w.r.t. initial conditions and parameter \mu with the implicit theta method and its discrete adjoint.
13c4762a1bSJed Brown 
14c4762a1bSJed Brown    Notes:
15c4762a1bSJed Brown    This code demonstrates the TSAdjoint interface to a DAE system.
16c4762a1bSJed Brown 
17c4762a1bSJed Brown    The user provides the implicit right-hand-side function
185ab1ac2bSHong Zhang    [ F(u',u,t) ] = [u' - f(u,t)] = [ u_1'] - [        u_2             ]
19c4762a1bSJed Brown                                    [ u_2']   [ \mu ((1-u_1^2)u_2-u_1) ]
20c4762a1bSJed Brown 
215ab1ac2bSHong Zhang    and the Jacobian of F (from the PETSc user manual)
22c4762a1bSJed Brown 
235ab1ac2bSHong Zhang               dF   dF
245ab1ac2bSHong Zhang    J(F) = a * -- + --
25c4762a1bSJed Brown               du'  du
26c4762a1bSJed Brown 
275ab1ac2bSHong Zhang    and the JacobianP of the explicit right-hand side of (2) f(u,t) ( which is equivalent to -F(0,u,t)).
28c4762a1bSJed Brown    df   [       0               ]
29c4762a1bSJed Brown    -- = [                       ]
30c4762a1bSJed Brown    dp   [ (1 - u_1^2) u_2 - u_1 ].
31c4762a1bSJed Brown 
32c4762a1bSJed Brown    See ex20.c for more details on the Jacobian.
33c4762a1bSJed Brown 
34c4762a1bSJed Brown   ------------------------------------------------------------------------- */
35c4762a1bSJed Brown #include <petscts.h>
36c4762a1bSJed Brown #include <petsctao.h>
37c4762a1bSJed Brown 
38c4762a1bSJed Brown typedef struct _n_User *User;
39c4762a1bSJed Brown struct _n_User {
40c4762a1bSJed Brown   PetscReal mu;
41c4762a1bSJed Brown   PetscReal next_output;
42c4762a1bSJed Brown 
43c4762a1bSJed Brown   /* Sensitivity analysis support */
44c4762a1bSJed Brown   PetscInt  steps;
45c4762a1bSJed Brown   PetscReal ftime;
46c4762a1bSJed Brown   Mat       A;                    /* Jacobian matrix */
47c4762a1bSJed Brown   Mat       Jacp;                 /* JacobianP matrix */
48c4762a1bSJed Brown   Vec       U, lambda[2], mup[2]; /* adjoint variables */
49c4762a1bSJed Brown };
50c4762a1bSJed Brown 
51c4762a1bSJed Brown /* ----------------------- Explicit form of the ODE  -------------------- */
52c4762a1bSJed Brown 
53*9371c9d4SSatish Balay static PetscErrorCode RHSFunction(TS ts, PetscReal t, Vec U, Vec F, void *ctx) {
54c4762a1bSJed Brown   User               user = (User)ctx;
55c4762a1bSJed Brown   PetscScalar       *f;
56c4762a1bSJed Brown   const PetscScalar *u;
57c4762a1bSJed Brown 
58c4762a1bSJed Brown   PetscFunctionBeginUser;
599566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(U, &u));
609566063dSJacob Faibussowitsch   PetscCall(VecGetArray(F, &f));
61c4762a1bSJed Brown   f[0] = u[1];
62c4762a1bSJed Brown   f[1] = user->mu * ((1. - u[0] * u[0]) * u[1] - u[0]);
639566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(U, &u));
649566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(F, &f));
65c4762a1bSJed Brown   PetscFunctionReturn(0);
66c4762a1bSJed Brown }
67c4762a1bSJed Brown 
68*9371c9d4SSatish Balay static PetscErrorCode RHSJacobian(TS ts, PetscReal t, Vec U, Mat A, Mat B, void *ctx) {
69c4762a1bSJed Brown   User               user     = (User)ctx;
70c4762a1bSJed Brown   PetscReal          mu       = user->mu;
71c4762a1bSJed Brown   PetscInt           rowcol[] = {0, 1};
72c4762a1bSJed Brown   PetscScalar        J[2][2];
73c4762a1bSJed Brown   const PetscScalar *u;
74c4762a1bSJed Brown 
75c4762a1bSJed Brown   PetscFunctionBeginUser;
769566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(U, &u));
77c4762a1bSJed Brown   J[0][0] = 0;
78c4762a1bSJed Brown   J[1][0] = -mu * (2.0 * u[1] * u[0] + 1.);
79c4762a1bSJed Brown   J[0][1] = 1.0;
80c4762a1bSJed Brown   J[1][1] = mu * (1.0 - u[0] * u[0]);
819566063dSJacob Faibussowitsch   PetscCall(MatSetValues(A, 2, rowcol, 2, rowcol, &J[0][0], INSERT_VALUES));
829566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY));
839566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY));
84c4762a1bSJed Brown   if (A != B) {
859566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
869566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
87c4762a1bSJed Brown   }
889566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(U, &u));
89c4762a1bSJed Brown   PetscFunctionReturn(0);
90c4762a1bSJed Brown }
91c4762a1bSJed Brown 
92c4762a1bSJed Brown /* ----------------------- Implicit form of the ODE  -------------------- */
93c4762a1bSJed Brown 
94*9371c9d4SSatish Balay static PetscErrorCode IFunction(TS ts, PetscReal t, Vec U, Vec Udot, Vec F, void *ctx) {
95c4762a1bSJed Brown   User               user = (User)ctx;
96c4762a1bSJed Brown   const PetscScalar *u, *udot;
97c4762a1bSJed Brown   PetscScalar       *f;
98c4762a1bSJed Brown 
99c4762a1bSJed Brown   PetscFunctionBeginUser;
1009566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(U, &u));
1019566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(Udot, &udot));
1029566063dSJacob Faibussowitsch   PetscCall(VecGetArray(F, &f));
103c4762a1bSJed Brown   f[0] = udot[0] - u[1];
104c4762a1bSJed Brown   f[1] = udot[1] - user->mu * ((1.0 - u[0] * u[0]) * u[1] - u[0]);
1059566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(U, &u));
1069566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(Udot, &udot));
1079566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(F, &f));
108c4762a1bSJed Brown   PetscFunctionReturn(0);
109c4762a1bSJed Brown }
110c4762a1bSJed Brown 
111*9371c9d4SSatish Balay static PetscErrorCode IJacobian(TS ts, PetscReal t, Vec U, Vec Udot, PetscReal a, Mat A, Mat B, void *ctx) {
112c4762a1bSJed Brown   User               user     = (User)ctx;
113c4762a1bSJed Brown   PetscInt           rowcol[] = {0, 1};
114c4762a1bSJed Brown   PetscScalar        J[2][2];
115c4762a1bSJed Brown   const PetscScalar *u;
116c4762a1bSJed Brown 
117c4762a1bSJed Brown   PetscFunctionBeginUser;
1189566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(U, &u));
119c4762a1bSJed Brown 
120*9371c9d4SSatish Balay   J[0][0] = a;
121*9371c9d4SSatish Balay   J[0][1] = -1.0;
122*9371c9d4SSatish Balay   J[1][0] = user->mu * (2.0 * u[0] * u[1] + 1.0);
123*9371c9d4SSatish Balay   J[1][1] = a - user->mu * (1.0 - u[0] * u[0]);
124c4762a1bSJed Brown 
1259566063dSJacob Faibussowitsch   PetscCall(MatSetValues(B, 2, rowcol, 2, rowcol, &J[0][0], INSERT_VALUES));
1269566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(U, &u));
127c4762a1bSJed Brown 
1289566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY));
1299566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY));
130c4762a1bSJed Brown   if (B && A != B) {
1319566063dSJacob Faibussowitsch     PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
1329566063dSJacob Faibussowitsch     PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
133c4762a1bSJed Brown   }
134c4762a1bSJed Brown   PetscFunctionReturn(0);
135c4762a1bSJed Brown }
136c4762a1bSJed Brown 
137*9371c9d4SSatish Balay static PetscErrorCode RHSJacobianP(TS ts, PetscReal t, Vec U, Mat A, void *ctx) {
138c4762a1bSJed Brown   PetscInt           row[] = {0, 1}, col[] = {0};
139c4762a1bSJed Brown   PetscScalar        J[2][1];
140c4762a1bSJed Brown   const PetscScalar *u;
141c4762a1bSJed Brown 
142c4762a1bSJed Brown   PetscFunctionBeginUser;
1439566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(U, &u));
144c4762a1bSJed Brown   J[0][0] = 0;
145c4762a1bSJed Brown   J[1][0] = (1. - u[0] * u[0]) * u[1] - u[0];
1469566063dSJacob Faibussowitsch   PetscCall(MatSetValues(A, 2, row, 1, col, &J[0][0], INSERT_VALUES));
1479566063dSJacob Faibussowitsch   PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY));
1489566063dSJacob Faibussowitsch   PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY));
1499566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(U, &u));
150c4762a1bSJed Brown   PetscFunctionReturn(0);
151c4762a1bSJed Brown }
152c4762a1bSJed Brown 
153c4762a1bSJed Brown /* Monitor timesteps and use interpolation to output at integer multiples of 0.1 */
154*9371c9d4SSatish Balay static PetscErrorCode Monitor(TS ts, PetscInt step, PetscReal t, Vec U, void *ctx) {
155c4762a1bSJed Brown   const PetscScalar *u;
156c4762a1bSJed Brown   PetscReal          tfinal, dt;
157c4762a1bSJed Brown   User               user = (User)ctx;
158c4762a1bSJed Brown   Vec                interpolatedU;
159c4762a1bSJed Brown 
160c4762a1bSJed Brown   PetscFunctionBeginUser;
1619566063dSJacob Faibussowitsch   PetscCall(TSGetTimeStep(ts, &dt));
1629566063dSJacob Faibussowitsch   PetscCall(TSGetMaxTime(ts, &tfinal));
163c4762a1bSJed Brown 
164c4762a1bSJed Brown   while (user->next_output <= t && user->next_output <= tfinal) {
1659566063dSJacob Faibussowitsch     PetscCall(VecDuplicate(U, &interpolatedU));
1669566063dSJacob Faibussowitsch     PetscCall(TSInterpolate(ts, user->next_output, interpolatedU));
1679566063dSJacob Faibussowitsch     PetscCall(VecGetArrayRead(interpolatedU, &u));
168*9371c9d4SSatish Balay     PetscCall(PetscPrintf(PETSC_COMM_WORLD, "[%g] %" PetscInt_FMT " TS %g (dt = %g) X %g %g\n", (double)user->next_output, step, (double)t, (double)dt, (double)PetscRealPart(u[0]), (double)PetscRealPart(u[1])));
1699566063dSJacob Faibussowitsch     PetscCall(VecRestoreArrayRead(interpolatedU, &u));
1709566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&interpolatedU));
171c4762a1bSJed Brown     user->next_output += 0.1;
172c4762a1bSJed Brown   }
173c4762a1bSJed Brown   PetscFunctionReturn(0);
174c4762a1bSJed Brown }
175c4762a1bSJed Brown 
176*9371c9d4SSatish Balay int main(int argc, char **argv) {
177c4762a1bSJed Brown   TS             ts;
178c4762a1bSJed Brown   PetscBool      monitor = PETSC_FALSE, implicitform = PETSC_TRUE;
179c4762a1bSJed Brown   PetscScalar   *x_ptr, *y_ptr, derp;
180c4762a1bSJed Brown   PetscMPIInt    size;
181c4762a1bSJed Brown   struct _n_User user;
182c4762a1bSJed Brown 
183c4762a1bSJed Brown   /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
184c4762a1bSJed Brown      Initialize program
185c4762a1bSJed Brown      - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */
186327415f7SBarry Smith   PetscFunctionBeginUser;
1879566063dSJacob Faibussowitsch   PetscCall(PetscInitialize(&argc, &argv, NULL, help));
1889566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PETSC_COMM_WORLD, &size));
1893c633725SBarry Smith   PetscCheck(size == 1, PETSC_COMM_WORLD, PETSC_ERR_WRONG_MPI_SIZE, "This is a uniprocessor example only!");
190c4762a1bSJed Brown 
191c4762a1bSJed Brown   /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
192c4762a1bSJed Brown     Set runtime options
193c4762a1bSJed Brown     - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */
194c4762a1bSJed Brown   user.next_output = 0.0;
195c4762a1bSJed Brown   user.mu          = 1.0e3;
196c4762a1bSJed Brown   user.steps       = 0;
197c4762a1bSJed Brown   user.ftime       = 0.5;
1989566063dSJacob Faibussowitsch   PetscCall(PetscOptionsGetBool(NULL, NULL, "-monitor", &monitor, NULL));
1999566063dSJacob Faibussowitsch   PetscCall(PetscOptionsGetReal(NULL, NULL, "-mu", &user.mu, NULL));
2009566063dSJacob Faibussowitsch   PetscCall(PetscOptionsGetBool(NULL, NULL, "-implicitform", &implicitform, NULL));
201c4762a1bSJed Brown 
202c4762a1bSJed Brown   /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
203c4762a1bSJed Brown     Create necessary matrix and vectors, solve same ODE on every process
204c4762a1bSJed Brown     - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */
2059566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_WORLD, &user.A));
2069566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(user.A, PETSC_DECIDE, PETSC_DECIDE, 2, 2));
2079566063dSJacob Faibussowitsch   PetscCall(MatSetFromOptions(user.A));
2089566063dSJacob Faibussowitsch   PetscCall(MatSetUp(user.A));
2099566063dSJacob Faibussowitsch   PetscCall(MatCreateVecs(user.A, &user.U, NULL));
210c4762a1bSJed Brown 
2119566063dSJacob Faibussowitsch   PetscCall(MatCreate(PETSC_COMM_WORLD, &user.Jacp));
2129566063dSJacob Faibussowitsch   PetscCall(MatSetSizes(user.Jacp, PETSC_DECIDE, PETSC_DECIDE, 2, 1));
2139566063dSJacob Faibussowitsch   PetscCall(MatSetFromOptions(user.Jacp));
2149566063dSJacob Faibussowitsch   PetscCall(MatSetUp(user.Jacp));
215c4762a1bSJed Brown 
216c4762a1bSJed Brown   /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
217c4762a1bSJed Brown      Create timestepping solver context
218c4762a1bSJed Brown    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */
2199566063dSJacob Faibussowitsch   PetscCall(TSCreate(PETSC_COMM_WORLD, &ts));
2209566063dSJacob Faibussowitsch   PetscCall(TSSetEquationType(ts, TS_EQ_ODE_EXPLICIT)); /* less Jacobian evaluations when adjoint BEuler is used, otherwise no effect */
221c4762a1bSJed Brown   if (implicitform) {
2229566063dSJacob Faibussowitsch     PetscCall(TSSetIFunction(ts, NULL, IFunction, &user));
2239566063dSJacob Faibussowitsch     PetscCall(TSSetIJacobian(ts, user.A, user.A, IJacobian, &user));
2249566063dSJacob Faibussowitsch     PetscCall(TSSetType(ts, TSCN));
225c4762a1bSJed Brown   } else {
2269566063dSJacob Faibussowitsch     PetscCall(TSSetRHSFunction(ts, NULL, RHSFunction, &user));
2279566063dSJacob Faibussowitsch     PetscCall(TSSetRHSJacobian(ts, user.A, user.A, RHSJacobian, &user));
2289566063dSJacob Faibussowitsch     PetscCall(TSSetType(ts, TSRK));
229c4762a1bSJed Brown   }
2309566063dSJacob Faibussowitsch   PetscCall(TSSetRHSJacobianP(ts, user.Jacp, RHSJacobianP, &user));
2319566063dSJacob Faibussowitsch   PetscCall(TSSetMaxTime(ts, user.ftime));
2329566063dSJacob Faibussowitsch   PetscCall(TSSetTimeStep(ts, 0.001));
2339566063dSJacob Faibussowitsch   PetscCall(TSSetExactFinalTime(ts, TS_EXACTFINALTIME_MATCHSTEP));
2349566063dSJacob Faibussowitsch   if (monitor) PetscCall(TSMonitorSet(ts, Monitor, &user, NULL));
235c4762a1bSJed Brown 
236c4762a1bSJed Brown   /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
237c4762a1bSJed Brown      Set initial conditions
238c4762a1bSJed Brown    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */
2399566063dSJacob Faibussowitsch   PetscCall(VecGetArray(user.U, &x_ptr));
240c4762a1bSJed Brown   x_ptr[0] = 2.0;
241c4762a1bSJed Brown   x_ptr[1] = -2.0 / 3.0 + 10.0 / (81.0 * user.mu) - 292.0 / (2187.0 * user.mu * user.mu);
2429566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(user.U, &x_ptr));
2439566063dSJacob Faibussowitsch   PetscCall(TSSetTimeStep(ts, 0.001));
244c4762a1bSJed Brown 
245c4762a1bSJed Brown   /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
246c4762a1bSJed Brown     Save trajectory of solution so that TSAdjointSolve() may be used
247c4762a1bSJed Brown    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */
2489566063dSJacob Faibussowitsch   PetscCall(TSSetSaveTrajectory(ts));
249c4762a1bSJed Brown 
250c4762a1bSJed Brown   /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
251c4762a1bSJed Brown      Set runtime options
252c4762a1bSJed Brown    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */
2539566063dSJacob Faibussowitsch   PetscCall(TSSetFromOptions(ts));
254c4762a1bSJed Brown 
2559566063dSJacob Faibussowitsch   PetscCall(TSSolve(ts, user.U));
2569566063dSJacob Faibussowitsch   PetscCall(TSGetSolveTime(ts, &user.ftime));
2579566063dSJacob Faibussowitsch   PetscCall(TSGetStepNumber(ts, &user.steps));
258c4762a1bSJed Brown 
259c4762a1bSJed Brown   /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
260c4762a1bSJed Brown      Adjoint model starts here
261c4762a1bSJed Brown      - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */
2629566063dSJacob Faibussowitsch   PetscCall(MatCreateVecs(user.A, &user.lambda[0], NULL));
263c4762a1bSJed Brown   /* Set initial conditions for the adjoint integration */
2649566063dSJacob Faibussowitsch   PetscCall(VecGetArray(user.lambda[0], &y_ptr));
265*9371c9d4SSatish Balay   y_ptr[0] = 1.0;
266*9371c9d4SSatish Balay   y_ptr[1] = 0.0;
2679566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(user.lambda[0], &y_ptr));
2689566063dSJacob Faibussowitsch   PetscCall(MatCreateVecs(user.A, &user.lambda[1], NULL));
2699566063dSJacob Faibussowitsch   PetscCall(VecGetArray(user.lambda[1], &y_ptr));
270*9371c9d4SSatish Balay   y_ptr[0] = 0.0;
271*9371c9d4SSatish Balay   y_ptr[1] = 1.0;
2729566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(user.lambda[1], &y_ptr));
273c4762a1bSJed Brown 
2749566063dSJacob Faibussowitsch   PetscCall(MatCreateVecs(user.Jacp, &user.mup[0], NULL));
2759566063dSJacob Faibussowitsch   PetscCall(VecGetArray(user.mup[0], &x_ptr));
276c4762a1bSJed Brown   x_ptr[0] = 0.0;
2779566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(user.mup[0], &x_ptr));
2789566063dSJacob Faibussowitsch   PetscCall(MatCreateVecs(user.Jacp, &user.mup[1], NULL));
2799566063dSJacob Faibussowitsch   PetscCall(VecGetArray(user.mup[1], &x_ptr));
280c4762a1bSJed Brown   x_ptr[0] = 0.0;
2819566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(user.mup[1], &x_ptr));
282c4762a1bSJed Brown 
2839566063dSJacob Faibussowitsch   PetscCall(TSSetCostGradients(ts, 2, user.lambda, user.mup));
284c4762a1bSJed Brown 
2859566063dSJacob Faibussowitsch   PetscCall(TSAdjointSolve(ts));
286c4762a1bSJed Brown 
2879566063dSJacob Faibussowitsch   PetscCall(PetscPrintf(PETSC_COMM_WORLD, "\n sensitivity wrt initial conditions: d[y(tf)]/d[y0]  d[y(tf)]/d[z0]\n"));
2889566063dSJacob Faibussowitsch   PetscCall(VecView(user.lambda[0], PETSC_VIEWER_STDOUT_WORLD));
2899566063dSJacob Faibussowitsch   PetscCall(PetscPrintf(PETSC_COMM_WORLD, "\n sensitivity wrt initial conditions: d[z(tf)]/d[y0]  d[z(tf)]/d[z0]\n"));
2909566063dSJacob Faibussowitsch   PetscCall(VecView(user.lambda[1], PETSC_VIEWER_STDOUT_WORLD));
291c4762a1bSJed Brown 
2929566063dSJacob Faibussowitsch   PetscCall(VecGetArray(user.mup[0], &x_ptr));
2939566063dSJacob Faibussowitsch   PetscCall(VecGetArray(user.lambda[0], &y_ptr));
294c4762a1bSJed Brown   derp = y_ptr[1] * (-10.0 / (81.0 * user.mu * user.mu) + 2.0 * 292.0 / (2187.0 * user.mu * user.mu * user.mu)) + x_ptr[0];
2959566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(user.mup[0], &x_ptr));
2969566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(user.lambda[0], &y_ptr));
2979566063dSJacob Faibussowitsch   PetscCall(PetscPrintf(PETSC_COMM_WORLD, "\n sensitivity wrt parameters: d[y(tf)]/d[mu]\n%g\n", (double)PetscRealPart(derp)));
298c4762a1bSJed Brown 
2999566063dSJacob Faibussowitsch   PetscCall(VecGetArray(user.mup[1], &x_ptr));
3009566063dSJacob Faibussowitsch   PetscCall(VecGetArray(user.lambda[1], &y_ptr));
301c4762a1bSJed Brown   derp = y_ptr[1] * (-10.0 / (81.0 * user.mu * user.mu) + 2.0 * 292.0 / (2187.0 * user.mu * user.mu * user.mu)) + x_ptr[0];
3029566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(user.mup[1], &x_ptr));
3039566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(user.lambda[1], &y_ptr));
3049566063dSJacob Faibussowitsch   PetscCall(PetscPrintf(PETSC_COMM_WORLD, "\n sensivitity wrt parameters: d[z(tf)]/d[mu]\n%g\n", (double)PetscRealPart(derp)));
305c4762a1bSJed Brown 
306c4762a1bSJed Brown   /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
307c4762a1bSJed Brown      Free work space.  All PETSc objects should be destroyed when they
308c4762a1bSJed Brown      are no longer needed.
309c4762a1bSJed Brown    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */
3109566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&user.A));
3119566063dSJacob Faibussowitsch   PetscCall(MatDestroy(&user.Jacp));
3129566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&user.U));
3139566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&user.lambda[0]));
3149566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&user.lambda[1]));
3159566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&user.mup[0]));
3169566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&user.mup[1]));
3179566063dSJacob Faibussowitsch   PetscCall(TSDestroy(&ts));
318c4762a1bSJed Brown 
3199566063dSJacob Faibussowitsch   PetscCall(PetscFinalize());
320b122ec5aSJacob Faibussowitsch   return 0;
321c4762a1bSJed Brown }
322c4762a1bSJed Brown 
323c4762a1bSJed Brown /*TEST
324c4762a1bSJed Brown 
325c4762a1bSJed Brown     test:
326c4762a1bSJed Brown       requires: revolve
327c4762a1bSJed Brown       args: -monitor 0 -ts_type theta -ts_theta_endpoint -ts_theta_theta 0.5 -viewer_binary_skip_info -ts_dt 0.001 -mu 100000
328c4762a1bSJed Brown 
329c4762a1bSJed Brown     test:
330c4762a1bSJed Brown       suffix: 2
331c4762a1bSJed Brown       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_solution_only
332c4762a1bSJed Brown 
333c4762a1bSJed Brown     test:
334c4762a1bSJed Brown       suffix: 3
335c4762a1bSJed Brown       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_solution_only 0
336c4762a1bSJed Brown       output_file: output/ex20adj_2.out
337c4762a1bSJed Brown 
338c4762a1bSJed Brown     test:
339c4762a1bSJed Brown       suffix: 4
340c4762a1bSJed Brown       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_stride 5 -ts_trajectory_solution_only -ts_trajectory_save_stack
341c4762a1bSJed Brown       output_file: output/ex20adj_2.out
342c4762a1bSJed Brown 
343c4762a1bSJed Brown     test:
344c4762a1bSJed Brown       suffix: 5
345c4762a1bSJed Brown       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_stride 5 -ts_trajectory_solution_only 0 -ts_trajectory_save_stack
346c4762a1bSJed Brown       output_file: output/ex20adj_2.out
347c4762a1bSJed Brown 
348c4762a1bSJed Brown     test:
349c4762a1bSJed Brown       suffix: 6
350c4762a1bSJed Brown       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_stride 5 -ts_trajectory_solution_only -ts_trajectory_save_stack 0
351c4762a1bSJed Brown       output_file: output/ex20adj_2.out
352c4762a1bSJed Brown 
353c4762a1bSJed Brown     test:
354c4762a1bSJed Brown       suffix: 7
355c4762a1bSJed Brown       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_stride 5 -ts_trajectory_solution_only 0 -ts_trajectory_save_stack 0
356c4762a1bSJed Brown       output_file: output/ex20adj_2.out
357c4762a1bSJed Brown 
358c4762a1bSJed Brown     test:
359c4762a1bSJed Brown       suffix: 8
36060f0b76eSHong Zhang       requires: revolve !cams
361c4762a1bSJed Brown       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 5 -ts_trajectory_solution_only -ts_trajectory_monitor
362c4762a1bSJed Brown       output_file: output/ex20adj_3.out
363c4762a1bSJed Brown 
364c4762a1bSJed Brown     test:
365c4762a1bSJed Brown       suffix: 9
36660f0b76eSHong Zhang       requires: revolve !cams
367c4762a1bSJed Brown       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 5 -ts_trajectory_solution_only 0 -ts_trajectory_monitor
368c4762a1bSJed Brown       output_file: output/ex20adj_4.out
369c4762a1bSJed Brown 
370c4762a1bSJed Brown     test:
371c4762a1bSJed Brown       requires: revolve
372c4762a1bSJed Brown       suffix: 10
373c4762a1bSJed Brown       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 5 -ts_trajectory_revolve_online -ts_trajectory_solution_only
374c4762a1bSJed Brown       output_file: output/ex20adj_2.out
375c4762a1bSJed Brown 
376c4762a1bSJed Brown     test:
377c4762a1bSJed Brown       requires: revolve
378c4762a1bSJed Brown       suffix: 11
379c4762a1bSJed Brown       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 5 -ts_trajectory_revolve_online -ts_trajectory_solution_only 0
380c4762a1bSJed Brown       output_file: output/ex20adj_2.out
381c4762a1bSJed Brown 
382c4762a1bSJed Brown     test:
383c4762a1bSJed Brown       suffix: 12
384c4762a1bSJed Brown       requires: revolve
385c4762a1bSJed Brown       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_max_cps_disk 8 -ts_trajectory_solution_only
386c4762a1bSJed Brown       output_file: output/ex20adj_2.out
387c4762a1bSJed Brown 
388c4762a1bSJed Brown     test:
389c4762a1bSJed Brown       suffix: 13
390c4762a1bSJed Brown       requires: revolve
391c4762a1bSJed Brown       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_max_cps_disk 8 -ts_trajectory_solution_only 0
392c4762a1bSJed Brown       output_file: output/ex20adj_2.out
393c4762a1bSJed Brown 
394c4762a1bSJed Brown     test:
395c4762a1bSJed Brown       suffix: 14
396c4762a1bSJed Brown       requires: revolve
397c4762a1bSJed Brown       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_stride 5 -ts_trajectory_solution_only -ts_trajectory_save_stack
398c4762a1bSJed Brown       output_file: output/ex20adj_2.out
399c4762a1bSJed Brown 
400c4762a1bSJed Brown     test:
401c4762a1bSJed Brown       suffix: 15
402c4762a1bSJed Brown       requires: revolve
403c4762a1bSJed Brown       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_stride 5 -ts_trajectory_solution_only -ts_trajectory_save_stack 0
404c4762a1bSJed Brown       output_file: output/ex20adj_2.out
405c4762a1bSJed Brown 
406c4762a1bSJed Brown     test:
407c4762a1bSJed Brown       suffix: 16
408c4762a1bSJed Brown       requires: revolve
409c4762a1bSJed Brown       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_stride 5 -ts_trajectory_solution_only 0 -ts_trajectory_save_stack
410c4762a1bSJed Brown       output_file: output/ex20adj_2.out
411c4762a1bSJed Brown 
412c4762a1bSJed Brown     test:
413c4762a1bSJed Brown       suffix: 17
414c4762a1bSJed Brown       requires: revolve
415c4762a1bSJed Brown       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_stride 5 -ts_trajectory_solution_only 0 -ts_trajectory_save_stack 0
416c4762a1bSJed Brown       output_file: output/ex20adj_2.out
417c4762a1bSJed Brown 
418c4762a1bSJed Brown     test:
419c4762a1bSJed Brown       suffix: 18
420c4762a1bSJed Brown       requires: revolve
421c4762a1bSJed Brown       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_max_cps_disk 8 -ts_trajectory_stride 5 -ts_trajectory_solution_only -ts_trajectory_save_stack
422c4762a1bSJed Brown       output_file: output/ex20adj_2.out
423c4762a1bSJed Brown 
424c4762a1bSJed Brown     test:
425c4762a1bSJed Brown       suffix: 19
426c4762a1bSJed Brown       requires: revolve
427c4762a1bSJed Brown       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_max_cps_disk 8 -ts_trajectory_stride 5 -ts_trajectory_solution_only 0 -ts_trajectory_save_stack
428c4762a1bSJed Brown       output_file: output/ex20adj_2.out
429c4762a1bSJed Brown 
430c4762a1bSJed Brown     test:
431c4762a1bSJed Brown       suffix: 20
432c4762a1bSJed Brown       requires: revolve
433c4762a1bSJed Brown       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_max_cps_disk 8 -ts_trajectory_solution_only 0
434c4762a1bSJed Brown       output_file: output/ex20adj_2.out
435c4762a1bSJed Brown 
436c4762a1bSJed Brown     test:
437c4762a1bSJed Brown       suffix: 21
438c4762a1bSJed Brown       requires: revolve
439c4762a1bSJed Brown       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_max_cps_disk 8 -ts_trajectory_stride 5 -ts_trajectory_solution_only 0 -ts_trajectory_save_stack 0
440c4762a1bSJed Brown       output_file: output/ex20adj_2.out
441c4762a1bSJed Brown 
442c4762a1bSJed Brown     test:
443c4762a1bSJed Brown       suffix: 22
444c4762a1bSJed Brown       args: -ts_type beuler -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_solution_only
445c4762a1bSJed Brown       output_file: output/ex20adj_2.out
446cc4f23bcSHong Zhang 
447cc4f23bcSHong Zhang     test:
448cc4f23bcSHong Zhang       suffix: 23
449cc4f23bcSHong Zhang       requires: cams
450533251d3SHong Zhang       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_units_ram 5 -ts_trajectory_solution_only -ts_trajectory_monitor -ts_trajectory_memory_type cams
45160f0b76eSHong Zhang       output_file: output/ex20adj_5.out
452cc4f23bcSHong Zhang 
453cc4f23bcSHong Zhang     test:
454cc4f23bcSHong Zhang       suffix: 24
455cc4f23bcSHong Zhang       requires: cams
456533251d3SHong Zhang       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_units_ram 5 -ts_trajectory_solution_only 0 -ts_trajectory_monitor -ts_trajectory_memory_type cams
45760f0b76eSHong Zhang       output_file: output/ex20adj_6.out
458cc4f23bcSHong Zhang 
459c4762a1bSJed Brown TEST*/
460