1c4762a1bSJed Brown static char help[] = "Performs adjoint sensitivity analysis for the van der Pol equation.\n"; 2c4762a1bSJed Brown 3c4762a1bSJed Brown /* 4c4762a1bSJed Brown Concepts: TS^time-dependent nonlinear problems 5c4762a1bSJed Brown Concepts: TS^van der Pol equation DAE equivalent 6c4762a1bSJed Brown Concepts: TS^adjoint sensitivity analysis 7c4762a1bSJed Brown Processors: 1 8c4762a1bSJed Brown */ 9c4762a1bSJed Brown /* ------------------------------------------------------------------------ 10c4762a1bSJed Brown 11c4762a1bSJed Brown This program solves the van der Pol DAE ODE equivalent 12c4762a1bSJed Brown [ u_1' ] = [ u_2 ] (2) 13c4762a1bSJed Brown [ u_2' ] [ \mu ((1 - u_1^2) u_2 - u_1) ] 14c4762a1bSJed Brown on the domain 0 <= x <= 1, with the boundary conditions 15c4762a1bSJed Brown u_1(0) = 2, u_2(0) = - 2/3 +10/(81*\mu) - 292/(2187*\mu^2), 16c4762a1bSJed Brown and 17c4762a1bSJed Brown \mu = 10^6 ( y'(0) ~ -0.6666665432100101)., 18c4762a1bSJed Brown and computes the sensitivities of the final solution w.r.t. initial conditions and parameter \mu with the implicit theta method and its discrete adjoint. 19c4762a1bSJed Brown 20c4762a1bSJed Brown Notes: 21c4762a1bSJed Brown This code demonstrates the TSAdjoint interface to a DAE system. 22c4762a1bSJed Brown 23c4762a1bSJed Brown The user provides the implicit right-hand-side function 245ab1ac2bSHong Zhang [ F(u',u,t) ] = [u' - f(u,t)] = [ u_1'] - [ u_2 ] 25c4762a1bSJed Brown [ u_2'] [ \mu ((1-u_1^2)u_2-u_1) ] 26c4762a1bSJed Brown 275ab1ac2bSHong Zhang and the Jacobian of F (from the PETSc user manual) 28c4762a1bSJed Brown 295ab1ac2bSHong Zhang dF dF 305ab1ac2bSHong Zhang J(F) = a * -- + -- 31c4762a1bSJed Brown du' du 32c4762a1bSJed Brown 335ab1ac2bSHong Zhang and the JacobianP of the explicit right-hand side of (2) f(u,t) ( which is equivalent to -F(0,u,t)). 34c4762a1bSJed Brown df [ 0 ] 35c4762a1bSJed Brown -- = [ ] 36c4762a1bSJed Brown dp [ (1 - u_1^2) u_2 - u_1 ]. 37c4762a1bSJed Brown 38c4762a1bSJed Brown See ex20.c for more details on the Jacobian. 39c4762a1bSJed Brown 40c4762a1bSJed Brown ------------------------------------------------------------------------- */ 41c4762a1bSJed Brown #include <petscts.h> 42c4762a1bSJed Brown #include <petsctao.h> 43c4762a1bSJed Brown 44c4762a1bSJed Brown typedef struct _n_User *User; 45c4762a1bSJed Brown struct _n_User { 46c4762a1bSJed Brown PetscReal mu; 47c4762a1bSJed Brown PetscReal next_output; 48c4762a1bSJed Brown 49c4762a1bSJed Brown /* Sensitivity analysis support */ 50c4762a1bSJed Brown PetscInt steps; 51c4762a1bSJed Brown PetscReal ftime; 52c4762a1bSJed Brown Mat A; /* Jacobian matrix */ 53c4762a1bSJed Brown Mat Jacp; /* JacobianP matrix */ 54c4762a1bSJed Brown Vec U,lambda[2],mup[2]; /* adjoint variables */ 55c4762a1bSJed Brown }; 56c4762a1bSJed Brown 57c4762a1bSJed Brown /* ----------------------- Explicit form of the ODE -------------------- */ 58c4762a1bSJed Brown 59c4762a1bSJed Brown static PetscErrorCode RHSFunction(TS ts,PetscReal t,Vec U,Vec F,void *ctx) 60c4762a1bSJed Brown { 61c4762a1bSJed Brown User user = (User)ctx; 62c4762a1bSJed Brown PetscScalar *f; 63c4762a1bSJed Brown const PetscScalar *u; 64c4762a1bSJed Brown 65c4762a1bSJed Brown PetscFunctionBeginUser; 66*9566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(U,&u)); 67*9566063dSJacob Faibussowitsch PetscCall(VecGetArray(F,&f)); 68c4762a1bSJed Brown f[0] = u[1]; 69c4762a1bSJed Brown f[1] = user->mu*((1.-u[0]*u[0])*u[1]-u[0]); 70*9566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(U,&u)); 71*9566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(F,&f)); 72c4762a1bSJed Brown PetscFunctionReturn(0); 73c4762a1bSJed Brown } 74c4762a1bSJed Brown 75c4762a1bSJed Brown static PetscErrorCode RHSJacobian(TS ts,PetscReal t,Vec U,Mat A,Mat B,void *ctx) 76c4762a1bSJed Brown { 77c4762a1bSJed Brown User user = (User)ctx; 78c4762a1bSJed Brown PetscReal mu = user->mu; 79c4762a1bSJed Brown PetscInt rowcol[] = {0,1}; 80c4762a1bSJed Brown PetscScalar J[2][2]; 81c4762a1bSJed Brown const PetscScalar *u; 82c4762a1bSJed Brown 83c4762a1bSJed Brown PetscFunctionBeginUser; 84*9566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(U,&u)); 85c4762a1bSJed Brown J[0][0] = 0; 86c4762a1bSJed Brown J[1][0] = -mu*(2.0*u[1]*u[0]+1.); 87c4762a1bSJed Brown J[0][1] = 1.0; 88c4762a1bSJed Brown J[1][1] = mu*(1.0-u[0]*u[0]); 89*9566063dSJacob Faibussowitsch PetscCall(MatSetValues(A,2,rowcol,2,rowcol,&J[0][0],INSERT_VALUES)); 90*9566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY)); 91*9566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY)); 92c4762a1bSJed Brown if (A != B) { 93*9566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY)); 94*9566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY)); 95c4762a1bSJed Brown } 96*9566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(U,&u)); 97c4762a1bSJed Brown PetscFunctionReturn(0); 98c4762a1bSJed Brown } 99c4762a1bSJed Brown 100c4762a1bSJed Brown /* ----------------------- Implicit form of the ODE -------------------- */ 101c4762a1bSJed Brown 102c4762a1bSJed Brown static PetscErrorCode IFunction(TS ts,PetscReal t,Vec U,Vec Udot,Vec F,void *ctx) 103c4762a1bSJed Brown { 104c4762a1bSJed Brown User user = (User)ctx; 105c4762a1bSJed Brown const PetscScalar *u,*udot; 106c4762a1bSJed Brown PetscScalar *f; 107c4762a1bSJed Brown 108c4762a1bSJed Brown PetscFunctionBeginUser; 109*9566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(U,&u)); 110*9566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(Udot,&udot)); 111*9566063dSJacob Faibussowitsch PetscCall(VecGetArray(F,&f)); 112c4762a1bSJed Brown f[0] = udot[0] - u[1]; 113c4762a1bSJed Brown f[1] = udot[1] - user->mu*((1.0-u[0]*u[0])*u[1] - u[0]); 114*9566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(U,&u)); 115*9566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(Udot,&udot)); 116*9566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(F,&f)); 117c4762a1bSJed Brown PetscFunctionReturn(0); 118c4762a1bSJed Brown } 119c4762a1bSJed Brown 120c4762a1bSJed Brown static PetscErrorCode IJacobian(TS ts,PetscReal t,Vec U,Vec Udot,PetscReal a,Mat A,Mat B,void *ctx) 121c4762a1bSJed Brown { 122c4762a1bSJed Brown User user = (User)ctx; 123c4762a1bSJed Brown PetscInt rowcol[] = {0,1}; 124c4762a1bSJed Brown PetscScalar J[2][2]; 125c4762a1bSJed Brown const PetscScalar *u; 126c4762a1bSJed Brown 127c4762a1bSJed Brown PetscFunctionBeginUser; 128*9566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(U,&u)); 129c4762a1bSJed Brown 130c4762a1bSJed Brown J[0][0] = a; J[0][1] = -1.0; 131c4762a1bSJed Brown J[1][0] = user->mu*(2.0*u[0]*u[1] + 1.0); J[1][1] = a - user->mu*(1.0-u[0]*u[0]); 132c4762a1bSJed Brown 133*9566063dSJacob Faibussowitsch PetscCall(MatSetValues(B,2,rowcol,2,rowcol,&J[0][0],INSERT_VALUES)); 134*9566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(U,&u)); 135c4762a1bSJed Brown 136*9566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY)); 137*9566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY)); 138c4762a1bSJed Brown if (B && A != B) { 139*9566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY)); 140*9566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY)); 141c4762a1bSJed Brown } 142c4762a1bSJed Brown PetscFunctionReturn(0); 143c4762a1bSJed Brown } 144c4762a1bSJed Brown 145c4762a1bSJed Brown static PetscErrorCode RHSJacobianP(TS ts,PetscReal t,Vec U,Mat A,void *ctx) 146c4762a1bSJed Brown { 147c4762a1bSJed Brown PetscInt row[] = {0,1},col[]={0}; 148c4762a1bSJed Brown PetscScalar J[2][1]; 149c4762a1bSJed Brown const PetscScalar *u; 150c4762a1bSJed Brown 151c4762a1bSJed Brown PetscFunctionBeginUser; 152*9566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(U,&u)); 153c4762a1bSJed Brown J[0][0] = 0; 154c4762a1bSJed Brown J[1][0] = (1.-u[0]*u[0])*u[1]-u[0]; 155*9566063dSJacob Faibussowitsch PetscCall(MatSetValues(A,2,row,1,col,&J[0][0],INSERT_VALUES)); 156*9566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY)); 157*9566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY)); 158*9566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(U,&u)); 159c4762a1bSJed Brown PetscFunctionReturn(0); 160c4762a1bSJed Brown } 161c4762a1bSJed Brown 162c4762a1bSJed Brown /* Monitor timesteps and use interpolation to output at integer multiples of 0.1 */ 163c4762a1bSJed Brown static PetscErrorCode Monitor(TS ts,PetscInt step,PetscReal t,Vec U,void *ctx) 164c4762a1bSJed Brown { 165c4762a1bSJed Brown const PetscScalar *u; 166c4762a1bSJed Brown PetscReal tfinal, dt; 167c4762a1bSJed Brown User user = (User)ctx; 168c4762a1bSJed Brown Vec interpolatedU; 169c4762a1bSJed Brown 170c4762a1bSJed Brown PetscFunctionBeginUser; 171*9566063dSJacob Faibussowitsch PetscCall(TSGetTimeStep(ts,&dt)); 172*9566063dSJacob Faibussowitsch PetscCall(TSGetMaxTime(ts,&tfinal)); 173c4762a1bSJed Brown 174c4762a1bSJed Brown while (user->next_output <= t && user->next_output <= tfinal) { 175*9566063dSJacob Faibussowitsch PetscCall(VecDuplicate(U,&interpolatedU)); 176*9566063dSJacob Faibussowitsch PetscCall(TSInterpolate(ts,user->next_output,interpolatedU)); 177*9566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(interpolatedU,&u)); 178*9566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_WORLD,"[%g] %D TS %g (dt = %g) X %g %g\n", 179c4762a1bSJed Brown (double)user->next_output,step,(double)t,(double)dt,(double)PetscRealPart(u[0]), 180b122ec5aSJacob Faibussowitsch (double)PetscRealPart(u[1]))); 181*9566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(interpolatedU,&u)); 182*9566063dSJacob Faibussowitsch PetscCall(VecDestroy(&interpolatedU)); 183c4762a1bSJed Brown user->next_output += 0.1; 184c4762a1bSJed Brown } 185c4762a1bSJed Brown PetscFunctionReturn(0); 186c4762a1bSJed Brown } 187c4762a1bSJed Brown 188c4762a1bSJed Brown int main(int argc,char **argv) 189c4762a1bSJed Brown { 190c4762a1bSJed Brown TS ts; 191c4762a1bSJed Brown PetscBool monitor = PETSC_FALSE,implicitform = PETSC_TRUE; 192c4762a1bSJed Brown PetscScalar *x_ptr,*y_ptr,derp; 193c4762a1bSJed Brown PetscMPIInt size; 194c4762a1bSJed Brown struct _n_User user; 195c4762a1bSJed Brown 196c4762a1bSJed Brown /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 197c4762a1bSJed Brown Initialize program 198c4762a1bSJed Brown - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */ 199*9566063dSJacob Faibussowitsch PetscCall(PetscInitialize(&argc,&argv,NULL,help)); 200*9566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PETSC_COMM_WORLD,&size)); 2013c633725SBarry Smith PetscCheck(size == 1,PETSC_COMM_WORLD,PETSC_ERR_WRONG_MPI_SIZE,"This is a uniprocessor example only!"); 202c4762a1bSJed Brown 203c4762a1bSJed Brown /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 204c4762a1bSJed Brown Set runtime options 205c4762a1bSJed Brown - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */ 206c4762a1bSJed Brown user.next_output = 0.0; 207c4762a1bSJed Brown user.mu = 1.0e3; 208c4762a1bSJed Brown user.steps = 0; 209c4762a1bSJed Brown user.ftime = 0.5; 210*9566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetBool(NULL,NULL,"-monitor",&monitor,NULL)); 211*9566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetReal(NULL,NULL,"-mu",&user.mu,NULL)); 212*9566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetBool(NULL,NULL,"-implicitform",&implicitform,NULL)); 213c4762a1bSJed Brown 214c4762a1bSJed Brown /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 215c4762a1bSJed Brown Create necessary matrix and vectors, solve same ODE on every process 216c4762a1bSJed Brown - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */ 217*9566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_WORLD,&user.A)); 218*9566063dSJacob Faibussowitsch PetscCall(MatSetSizes(user.A,PETSC_DECIDE,PETSC_DECIDE,2,2)); 219*9566063dSJacob Faibussowitsch PetscCall(MatSetFromOptions(user.A)); 220*9566063dSJacob Faibussowitsch PetscCall(MatSetUp(user.A)); 221*9566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(user.A,&user.U,NULL)); 222c4762a1bSJed Brown 223*9566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_WORLD,&user.Jacp)); 224*9566063dSJacob Faibussowitsch PetscCall(MatSetSizes(user.Jacp,PETSC_DECIDE,PETSC_DECIDE,2,1)); 225*9566063dSJacob Faibussowitsch PetscCall(MatSetFromOptions(user.Jacp)); 226*9566063dSJacob Faibussowitsch PetscCall(MatSetUp(user.Jacp)); 227c4762a1bSJed Brown 228c4762a1bSJed Brown /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 229c4762a1bSJed Brown Create timestepping solver context 230c4762a1bSJed Brown - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */ 231*9566063dSJacob Faibussowitsch PetscCall(TSCreate(PETSC_COMM_WORLD,&ts)); 232*9566063dSJacob Faibussowitsch PetscCall(TSSetEquationType(ts,TS_EQ_ODE_EXPLICIT)); /* less Jacobian evaluations when adjoint BEuler is used, otherwise no effect */ 233c4762a1bSJed Brown if (implicitform) { 234*9566063dSJacob Faibussowitsch PetscCall(TSSetIFunction(ts,NULL,IFunction,&user)); 235*9566063dSJacob Faibussowitsch PetscCall(TSSetIJacobian(ts,user.A,user.A,IJacobian,&user)); 236*9566063dSJacob Faibussowitsch PetscCall(TSSetType(ts,TSCN)); 237c4762a1bSJed Brown } else { 238*9566063dSJacob Faibussowitsch PetscCall(TSSetRHSFunction(ts,NULL,RHSFunction,&user)); 239*9566063dSJacob Faibussowitsch PetscCall(TSSetRHSJacobian(ts,user.A,user.A,RHSJacobian,&user)); 240*9566063dSJacob Faibussowitsch PetscCall(TSSetType(ts,TSRK)); 241c4762a1bSJed Brown } 242*9566063dSJacob Faibussowitsch PetscCall(TSSetRHSJacobianP(ts,user.Jacp,RHSJacobianP,&user)); 243*9566063dSJacob Faibussowitsch PetscCall(TSSetMaxTime(ts,user.ftime)); 244*9566063dSJacob Faibussowitsch PetscCall(TSSetTimeStep(ts,0.001)); 245*9566063dSJacob Faibussowitsch PetscCall(TSSetExactFinalTime(ts,TS_EXACTFINALTIME_MATCHSTEP)); 246*9566063dSJacob Faibussowitsch if (monitor) PetscCall(TSMonitorSet(ts,Monitor,&user,NULL)); 247c4762a1bSJed Brown 248c4762a1bSJed Brown /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 249c4762a1bSJed Brown Set initial conditions 250c4762a1bSJed Brown - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */ 251*9566063dSJacob Faibussowitsch PetscCall(VecGetArray(user.U,&x_ptr)); 252c4762a1bSJed Brown x_ptr[0] = 2.0; 253c4762a1bSJed Brown x_ptr[1] = -2.0/3.0 + 10.0/(81.0*user.mu) - 292.0/(2187.0*user.mu*user.mu); 254*9566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(user.U,&x_ptr)); 255*9566063dSJacob Faibussowitsch PetscCall(TSSetTimeStep(ts,0.001)); 256c4762a1bSJed Brown 257c4762a1bSJed Brown /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 258c4762a1bSJed Brown Save trajectory of solution so that TSAdjointSolve() may be used 259c4762a1bSJed Brown - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */ 260*9566063dSJacob Faibussowitsch PetscCall(TSSetSaveTrajectory(ts)); 261c4762a1bSJed Brown 262c4762a1bSJed Brown /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 263c4762a1bSJed Brown Set runtime options 264c4762a1bSJed Brown - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */ 265*9566063dSJacob Faibussowitsch PetscCall(TSSetFromOptions(ts)); 266c4762a1bSJed Brown 267*9566063dSJacob Faibussowitsch PetscCall(TSSolve(ts,user.U)); 268*9566063dSJacob Faibussowitsch PetscCall(TSGetSolveTime(ts,&user.ftime)); 269*9566063dSJacob Faibussowitsch PetscCall(TSGetStepNumber(ts,&user.steps)); 270c4762a1bSJed Brown 271c4762a1bSJed Brown /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 272c4762a1bSJed Brown Adjoint model starts here 273c4762a1bSJed Brown - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */ 274*9566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(user.A,&user.lambda[0],NULL)); 275c4762a1bSJed Brown /* Set initial conditions for the adjoint integration */ 276*9566063dSJacob Faibussowitsch PetscCall(VecGetArray(user.lambda[0],&y_ptr)); 277c4762a1bSJed Brown y_ptr[0] = 1.0; y_ptr[1] = 0.0; 278*9566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(user.lambda[0],&y_ptr)); 279*9566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(user.A,&user.lambda[1],NULL)); 280*9566063dSJacob Faibussowitsch PetscCall(VecGetArray(user.lambda[1],&y_ptr)); 281c4762a1bSJed Brown y_ptr[0] = 0.0; y_ptr[1] = 1.0; 282*9566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(user.lambda[1],&y_ptr)); 283c4762a1bSJed Brown 284*9566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(user.Jacp,&user.mup[0],NULL)); 285*9566063dSJacob Faibussowitsch PetscCall(VecGetArray(user.mup[0],&x_ptr)); 286c4762a1bSJed Brown x_ptr[0] = 0.0; 287*9566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(user.mup[0],&x_ptr)); 288*9566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(user.Jacp,&user.mup[1],NULL)); 289*9566063dSJacob Faibussowitsch PetscCall(VecGetArray(user.mup[1],&x_ptr)); 290c4762a1bSJed Brown x_ptr[0] = 0.0; 291*9566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(user.mup[1],&x_ptr)); 292c4762a1bSJed Brown 293*9566063dSJacob Faibussowitsch PetscCall(TSSetCostGradients(ts,2,user.lambda,user.mup)); 294c4762a1bSJed Brown 295*9566063dSJacob Faibussowitsch PetscCall(TSAdjointSolve(ts)); 296c4762a1bSJed Brown 297*9566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_WORLD,"\n sensitivity wrt initial conditions: d[y(tf)]/d[y0] d[y(tf)]/d[z0]\n")); 298*9566063dSJacob Faibussowitsch PetscCall(VecView(user.lambda[0],PETSC_VIEWER_STDOUT_WORLD)); 299*9566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_WORLD,"\n sensitivity wrt initial conditions: d[z(tf)]/d[y0] d[z(tf)]/d[z0]\n")); 300*9566063dSJacob Faibussowitsch PetscCall(VecView(user.lambda[1],PETSC_VIEWER_STDOUT_WORLD)); 301c4762a1bSJed Brown 302*9566063dSJacob Faibussowitsch PetscCall(VecGetArray(user.mup[0],&x_ptr)); 303*9566063dSJacob Faibussowitsch PetscCall(VecGetArray(user.lambda[0],&y_ptr)); 304c4762a1bSJed Brown derp = y_ptr[1]*(-10.0/(81.0*user.mu*user.mu)+2.0*292.0/(2187.0*user.mu*user.mu*user.mu))+x_ptr[0]; 305*9566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(user.mup[0],&x_ptr)); 306*9566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(user.lambda[0],&y_ptr)); 307*9566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_WORLD,"\n sensitivity wrt parameters: d[y(tf)]/d[mu]\n%g\n",(double)PetscRealPart(derp))); 308c4762a1bSJed Brown 309*9566063dSJacob Faibussowitsch PetscCall(VecGetArray(user.mup[1],&x_ptr)); 310*9566063dSJacob Faibussowitsch PetscCall(VecGetArray(user.lambda[1],&y_ptr)); 311c4762a1bSJed Brown derp = y_ptr[1]*(-10.0/(81.0*user.mu*user.mu)+2.0*292.0/(2187.0*user.mu*user.mu*user.mu))+x_ptr[0]; 312*9566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(user.mup[1],&x_ptr)); 313*9566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(user.lambda[1],&y_ptr)); 314*9566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_WORLD,"\n sensivitity wrt parameters: d[z(tf)]/d[mu]\n%g\n",(double)PetscRealPart(derp))); 315c4762a1bSJed Brown 316c4762a1bSJed Brown /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 317c4762a1bSJed Brown Free work space. All PETSc objects should be destroyed when they 318c4762a1bSJed Brown are no longer needed. 319c4762a1bSJed Brown - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */ 320*9566063dSJacob Faibussowitsch PetscCall(MatDestroy(&user.A)); 321*9566063dSJacob Faibussowitsch PetscCall(MatDestroy(&user.Jacp)); 322*9566063dSJacob Faibussowitsch PetscCall(VecDestroy(&user.U)); 323*9566063dSJacob Faibussowitsch PetscCall(VecDestroy(&user.lambda[0])); 324*9566063dSJacob Faibussowitsch PetscCall(VecDestroy(&user.lambda[1])); 325*9566063dSJacob Faibussowitsch PetscCall(VecDestroy(&user.mup[0])); 326*9566063dSJacob Faibussowitsch PetscCall(VecDestroy(&user.mup[1])); 327*9566063dSJacob Faibussowitsch PetscCall(TSDestroy(&ts)); 328c4762a1bSJed Brown 329*9566063dSJacob Faibussowitsch PetscCall(PetscFinalize()); 330b122ec5aSJacob Faibussowitsch return 0; 331c4762a1bSJed Brown } 332c4762a1bSJed Brown 333c4762a1bSJed Brown /*TEST 334c4762a1bSJed Brown 335c4762a1bSJed Brown test: 336c4762a1bSJed Brown requires: revolve 337c4762a1bSJed Brown args: -monitor 0 -ts_type theta -ts_theta_endpoint -ts_theta_theta 0.5 -viewer_binary_skip_info -ts_dt 0.001 -mu 100000 338c4762a1bSJed Brown 339c4762a1bSJed Brown test: 340c4762a1bSJed Brown suffix: 2 341c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_solution_only 342c4762a1bSJed Brown 343c4762a1bSJed Brown test: 344c4762a1bSJed Brown suffix: 3 345c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_solution_only 0 346c4762a1bSJed Brown output_file: output/ex20adj_2.out 347c4762a1bSJed Brown 348c4762a1bSJed Brown test: 349c4762a1bSJed Brown suffix: 4 350c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_stride 5 -ts_trajectory_solution_only -ts_trajectory_save_stack 351c4762a1bSJed Brown output_file: output/ex20adj_2.out 352c4762a1bSJed Brown 353c4762a1bSJed Brown test: 354c4762a1bSJed Brown suffix: 5 355c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_stride 5 -ts_trajectory_solution_only 0 -ts_trajectory_save_stack 356c4762a1bSJed Brown output_file: output/ex20adj_2.out 357c4762a1bSJed Brown 358c4762a1bSJed Brown test: 359c4762a1bSJed Brown suffix: 6 360c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_stride 5 -ts_trajectory_solution_only -ts_trajectory_save_stack 0 361c4762a1bSJed Brown output_file: output/ex20adj_2.out 362c4762a1bSJed Brown 363c4762a1bSJed Brown test: 364c4762a1bSJed Brown suffix: 7 365c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_stride 5 -ts_trajectory_solution_only 0 -ts_trajectory_save_stack 0 366c4762a1bSJed Brown output_file: output/ex20adj_2.out 367c4762a1bSJed Brown 368c4762a1bSJed Brown test: 369c4762a1bSJed Brown suffix: 8 37060f0b76eSHong Zhang requires: revolve !cams 371c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 5 -ts_trajectory_solution_only -ts_trajectory_monitor 372c4762a1bSJed Brown output_file: output/ex20adj_3.out 373c4762a1bSJed Brown 374c4762a1bSJed Brown test: 375c4762a1bSJed Brown suffix: 9 37660f0b76eSHong Zhang requires: revolve !cams 377c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 5 -ts_trajectory_solution_only 0 -ts_trajectory_monitor 378c4762a1bSJed Brown output_file: output/ex20adj_4.out 379c4762a1bSJed Brown 380c4762a1bSJed Brown test: 381c4762a1bSJed Brown requires: revolve 382c4762a1bSJed Brown suffix: 10 383c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 5 -ts_trajectory_revolve_online -ts_trajectory_solution_only 384c4762a1bSJed Brown output_file: output/ex20adj_2.out 385c4762a1bSJed Brown 386c4762a1bSJed Brown test: 387c4762a1bSJed Brown requires: revolve 388c4762a1bSJed Brown suffix: 11 389c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 5 -ts_trajectory_revolve_online -ts_trajectory_solution_only 0 390c4762a1bSJed Brown output_file: output/ex20adj_2.out 391c4762a1bSJed Brown 392c4762a1bSJed Brown test: 393c4762a1bSJed Brown suffix: 12 394c4762a1bSJed Brown requires: revolve 395c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_max_cps_disk 8 -ts_trajectory_solution_only 396c4762a1bSJed Brown output_file: output/ex20adj_2.out 397c4762a1bSJed Brown 398c4762a1bSJed Brown test: 399c4762a1bSJed Brown suffix: 13 400c4762a1bSJed Brown requires: revolve 401c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_max_cps_disk 8 -ts_trajectory_solution_only 0 402c4762a1bSJed Brown output_file: output/ex20adj_2.out 403c4762a1bSJed Brown 404c4762a1bSJed Brown test: 405c4762a1bSJed Brown suffix: 14 406c4762a1bSJed Brown requires: revolve 407c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_stride 5 -ts_trajectory_solution_only -ts_trajectory_save_stack 408c4762a1bSJed Brown output_file: output/ex20adj_2.out 409c4762a1bSJed Brown 410c4762a1bSJed Brown test: 411c4762a1bSJed Brown suffix: 15 412c4762a1bSJed Brown requires: revolve 413c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_stride 5 -ts_trajectory_solution_only -ts_trajectory_save_stack 0 414c4762a1bSJed Brown output_file: output/ex20adj_2.out 415c4762a1bSJed Brown 416c4762a1bSJed Brown test: 417c4762a1bSJed Brown suffix: 16 418c4762a1bSJed Brown requires: revolve 419c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_stride 5 -ts_trajectory_solution_only 0 -ts_trajectory_save_stack 420c4762a1bSJed Brown output_file: output/ex20adj_2.out 421c4762a1bSJed Brown 422c4762a1bSJed Brown test: 423c4762a1bSJed Brown suffix: 17 424c4762a1bSJed Brown requires: revolve 425c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_stride 5 -ts_trajectory_solution_only 0 -ts_trajectory_save_stack 0 426c4762a1bSJed Brown output_file: output/ex20adj_2.out 427c4762a1bSJed Brown 428c4762a1bSJed Brown test: 429c4762a1bSJed Brown suffix: 18 430c4762a1bSJed Brown requires: revolve 431c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_max_cps_disk 8 -ts_trajectory_stride 5 -ts_trajectory_solution_only -ts_trajectory_save_stack 432c4762a1bSJed Brown output_file: output/ex20adj_2.out 433c4762a1bSJed Brown 434c4762a1bSJed Brown test: 435c4762a1bSJed Brown suffix: 19 436c4762a1bSJed Brown requires: revolve 437c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_max_cps_disk 8 -ts_trajectory_stride 5 -ts_trajectory_solution_only 0 -ts_trajectory_save_stack 438c4762a1bSJed Brown output_file: output/ex20adj_2.out 439c4762a1bSJed Brown 440c4762a1bSJed Brown test: 441c4762a1bSJed Brown suffix: 20 442c4762a1bSJed Brown requires: revolve 443c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_max_cps_disk 8 -ts_trajectory_solution_only 0 444c4762a1bSJed Brown output_file: output/ex20adj_2.out 445c4762a1bSJed Brown 446c4762a1bSJed Brown test: 447c4762a1bSJed Brown suffix: 21 448c4762a1bSJed Brown requires: revolve 449c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_max_cps_disk 8 -ts_trajectory_stride 5 -ts_trajectory_solution_only 0 -ts_trajectory_save_stack 0 450c4762a1bSJed Brown output_file: output/ex20adj_2.out 451c4762a1bSJed Brown 452c4762a1bSJed Brown test: 453c4762a1bSJed Brown suffix: 22 454c4762a1bSJed Brown args: -ts_type beuler -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_solution_only 455c4762a1bSJed Brown output_file: output/ex20adj_2.out 456cc4f23bcSHong Zhang 457cc4f23bcSHong Zhang test: 458cc4f23bcSHong Zhang suffix: 23 459cc4f23bcSHong Zhang requires: cams 460533251d3SHong Zhang args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_units_ram 5 -ts_trajectory_solution_only -ts_trajectory_monitor -ts_trajectory_memory_type cams 46160f0b76eSHong Zhang output_file: output/ex20adj_5.out 462cc4f23bcSHong Zhang 463cc4f23bcSHong Zhang test: 464cc4f23bcSHong Zhang suffix: 24 465cc4f23bcSHong Zhang requires: cams 466533251d3SHong Zhang args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_units_ram 5 -ts_trajectory_solution_only 0 -ts_trajectory_monitor -ts_trajectory_memory_type cams 46760f0b76eSHong Zhang output_file: output/ex20adj_6.out 468cc4f23bcSHong Zhang 469c4762a1bSJed Brown TEST*/ 470