xref: /petsc/src/ts/tutorials/ex20adj.c (revision b122ec5aa1bd4469eb4e0673542fb7de3f411254)
1c4762a1bSJed Brown static char help[] = "Performs adjoint sensitivity analysis for the van der Pol equation.\n";
2c4762a1bSJed Brown 
3c4762a1bSJed Brown /*
4c4762a1bSJed Brown    Concepts: TS^time-dependent nonlinear problems
5c4762a1bSJed Brown    Concepts: TS^van der Pol equation DAE equivalent
6c4762a1bSJed Brown    Concepts: TS^adjoint sensitivity analysis
7c4762a1bSJed Brown    Processors: 1
8c4762a1bSJed Brown */
9c4762a1bSJed Brown /* ------------------------------------------------------------------------
10c4762a1bSJed Brown 
11c4762a1bSJed Brown    This program solves the van der Pol DAE ODE equivalent
12c4762a1bSJed Brown       [ u_1' ] = [          u_2                ]  (2)
13c4762a1bSJed Brown       [ u_2' ]   [ \mu ((1 - u_1^2) u_2 - u_1) ]
14c4762a1bSJed Brown    on the domain 0 <= x <= 1, with the boundary conditions
15c4762a1bSJed Brown        u_1(0) = 2, u_2(0) = - 2/3 +10/(81*\mu) - 292/(2187*\mu^2),
16c4762a1bSJed Brown    and
17c4762a1bSJed Brown        \mu = 10^6 ( y'(0) ~ -0.6666665432100101).,
18c4762a1bSJed Brown    and computes the sensitivities of the final solution w.r.t. initial conditions and parameter \mu with the implicit theta method and its discrete adjoint.
19c4762a1bSJed Brown 
20c4762a1bSJed Brown    Notes:
21c4762a1bSJed Brown    This code demonstrates the TSAdjoint interface to a DAE system.
22c4762a1bSJed Brown 
23c4762a1bSJed Brown    The user provides the implicit right-hand-side function
245ab1ac2bSHong Zhang    [ F(u',u,t) ] = [u' - f(u,t)] = [ u_1'] - [        u_2             ]
25c4762a1bSJed Brown                                    [ u_2']   [ \mu ((1-u_1^2)u_2-u_1) ]
26c4762a1bSJed Brown 
275ab1ac2bSHong Zhang    and the Jacobian of F (from the PETSc user manual)
28c4762a1bSJed Brown 
295ab1ac2bSHong Zhang               dF   dF
305ab1ac2bSHong Zhang    J(F) = a * -- + --
31c4762a1bSJed Brown               du'  du
32c4762a1bSJed Brown 
335ab1ac2bSHong Zhang    and the JacobianP of the explicit right-hand side of (2) f(u,t) ( which is equivalent to -F(0,u,t)).
34c4762a1bSJed Brown    df   [       0               ]
35c4762a1bSJed Brown    -- = [                       ]
36c4762a1bSJed Brown    dp   [ (1 - u_1^2) u_2 - u_1 ].
37c4762a1bSJed Brown 
38c4762a1bSJed Brown    See ex20.c for more details on the Jacobian.
39c4762a1bSJed Brown 
40c4762a1bSJed Brown   ------------------------------------------------------------------------- */
41c4762a1bSJed Brown #include <petscts.h>
42c4762a1bSJed Brown #include <petsctao.h>
43c4762a1bSJed Brown 
44c4762a1bSJed Brown typedef struct _n_User *User;
45c4762a1bSJed Brown struct _n_User {
46c4762a1bSJed Brown   PetscReal mu;
47c4762a1bSJed Brown   PetscReal next_output;
48c4762a1bSJed Brown 
49c4762a1bSJed Brown   /* Sensitivity analysis support */
50c4762a1bSJed Brown   PetscInt  steps;
51c4762a1bSJed Brown   PetscReal ftime;
52c4762a1bSJed Brown   Mat       A;                   /* Jacobian matrix */
53c4762a1bSJed Brown   Mat       Jacp;                /* JacobianP matrix */
54c4762a1bSJed Brown   Vec       U,lambda[2],mup[2];  /* adjoint variables */
55c4762a1bSJed Brown };
56c4762a1bSJed Brown 
57c4762a1bSJed Brown /* ----------------------- Explicit form of the ODE  -------------------- */
58c4762a1bSJed Brown 
59c4762a1bSJed Brown static PetscErrorCode RHSFunction(TS ts,PetscReal t,Vec U,Vec F,void *ctx)
60c4762a1bSJed Brown {
61c4762a1bSJed Brown   User              user = (User)ctx;
62c4762a1bSJed Brown   PetscScalar       *f;
63c4762a1bSJed Brown   const PetscScalar *u;
64c4762a1bSJed Brown 
65c4762a1bSJed Brown   PetscFunctionBeginUser;
665f80ce2aSJacob Faibussowitsch   CHKERRQ(VecGetArrayRead(U,&u));
675f80ce2aSJacob Faibussowitsch   CHKERRQ(VecGetArray(F,&f));
68c4762a1bSJed Brown   f[0] = u[1];
69c4762a1bSJed Brown   f[1] = user->mu*((1.-u[0]*u[0])*u[1]-u[0]);
705f80ce2aSJacob Faibussowitsch   CHKERRQ(VecRestoreArrayRead(U,&u));
715f80ce2aSJacob Faibussowitsch   CHKERRQ(VecRestoreArray(F,&f));
72c4762a1bSJed Brown   PetscFunctionReturn(0);
73c4762a1bSJed Brown }
74c4762a1bSJed Brown 
75c4762a1bSJed Brown static PetscErrorCode RHSJacobian(TS ts,PetscReal t,Vec U,Mat A,Mat B,void *ctx)
76c4762a1bSJed Brown {
77c4762a1bSJed Brown   User              user = (User)ctx;
78c4762a1bSJed Brown   PetscReal         mu   = user->mu;
79c4762a1bSJed Brown   PetscInt          rowcol[] = {0,1};
80c4762a1bSJed Brown   PetscScalar       J[2][2];
81c4762a1bSJed Brown   const PetscScalar *u;
82c4762a1bSJed Brown 
83c4762a1bSJed Brown   PetscFunctionBeginUser;
845f80ce2aSJacob Faibussowitsch   CHKERRQ(VecGetArrayRead(U,&u));
85c4762a1bSJed Brown   J[0][0] = 0;
86c4762a1bSJed Brown   J[1][0] = -mu*(2.0*u[1]*u[0]+1.);
87c4762a1bSJed Brown   J[0][1] = 1.0;
88c4762a1bSJed Brown   J[1][1] = mu*(1.0-u[0]*u[0]);
895f80ce2aSJacob Faibussowitsch   CHKERRQ(MatSetValues(A,2,rowcol,2,rowcol,&J[0][0],INSERT_VALUES));
905f80ce2aSJacob Faibussowitsch   CHKERRQ(MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY));
915f80ce2aSJacob Faibussowitsch   CHKERRQ(MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY));
92c4762a1bSJed Brown   if (A != B) {
935f80ce2aSJacob Faibussowitsch     CHKERRQ(MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY));
945f80ce2aSJacob Faibussowitsch     CHKERRQ(MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY));
95c4762a1bSJed Brown   }
965f80ce2aSJacob Faibussowitsch   CHKERRQ(VecRestoreArrayRead(U,&u));
97c4762a1bSJed Brown   PetscFunctionReturn(0);
98c4762a1bSJed Brown }
99c4762a1bSJed Brown 
100c4762a1bSJed Brown /* ----------------------- Implicit form of the ODE  -------------------- */
101c4762a1bSJed Brown 
102c4762a1bSJed Brown static PetscErrorCode IFunction(TS ts,PetscReal t,Vec U,Vec Udot,Vec F,void *ctx)
103c4762a1bSJed Brown {
104c4762a1bSJed Brown   User              user = (User)ctx;
105c4762a1bSJed Brown   const PetscScalar *u,*udot;
106c4762a1bSJed Brown   PetscScalar       *f;
107c4762a1bSJed Brown 
108c4762a1bSJed Brown   PetscFunctionBeginUser;
1095f80ce2aSJacob Faibussowitsch   CHKERRQ(VecGetArrayRead(U,&u));
1105f80ce2aSJacob Faibussowitsch   CHKERRQ(VecGetArrayRead(Udot,&udot));
1115f80ce2aSJacob Faibussowitsch   CHKERRQ(VecGetArray(F,&f));
112c4762a1bSJed Brown   f[0] = udot[0] - u[1];
113c4762a1bSJed Brown   f[1] = udot[1] - user->mu*((1.0-u[0]*u[0])*u[1] - u[0]);
1145f80ce2aSJacob Faibussowitsch   CHKERRQ(VecRestoreArrayRead(U,&u));
1155f80ce2aSJacob Faibussowitsch   CHKERRQ(VecRestoreArrayRead(Udot,&udot));
1165f80ce2aSJacob Faibussowitsch   CHKERRQ(VecRestoreArray(F,&f));
117c4762a1bSJed Brown   PetscFunctionReturn(0);
118c4762a1bSJed Brown }
119c4762a1bSJed Brown 
120c4762a1bSJed Brown static PetscErrorCode IJacobian(TS ts,PetscReal t,Vec U,Vec Udot,PetscReal a,Mat A,Mat B,void *ctx)
121c4762a1bSJed Brown {
122c4762a1bSJed Brown   User              user     = (User)ctx;
123c4762a1bSJed Brown   PetscInt          rowcol[] = {0,1};
124c4762a1bSJed Brown   PetscScalar       J[2][2];
125c4762a1bSJed Brown   const PetscScalar *u;
126c4762a1bSJed Brown 
127c4762a1bSJed Brown   PetscFunctionBeginUser;
1285f80ce2aSJacob Faibussowitsch   CHKERRQ(VecGetArrayRead(U,&u));
129c4762a1bSJed Brown 
130c4762a1bSJed Brown   J[0][0] = a;     J[0][1] =  -1.0;
131c4762a1bSJed Brown   J[1][0] = user->mu*(2.0*u[0]*u[1] + 1.0);   J[1][1] = a - user->mu*(1.0-u[0]*u[0]);
132c4762a1bSJed Brown 
1335f80ce2aSJacob Faibussowitsch   CHKERRQ(MatSetValues(B,2,rowcol,2,rowcol,&J[0][0],INSERT_VALUES));
1345f80ce2aSJacob Faibussowitsch   CHKERRQ(VecRestoreArrayRead(U,&u));
135c4762a1bSJed Brown 
1365f80ce2aSJacob Faibussowitsch   CHKERRQ(MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY));
1375f80ce2aSJacob Faibussowitsch   CHKERRQ(MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY));
138c4762a1bSJed Brown   if (B && A != B) {
1395f80ce2aSJacob Faibussowitsch     CHKERRQ(MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY));
1405f80ce2aSJacob Faibussowitsch     CHKERRQ(MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY));
141c4762a1bSJed Brown   }
142c4762a1bSJed Brown   PetscFunctionReturn(0);
143c4762a1bSJed Brown }
144c4762a1bSJed Brown 
145c4762a1bSJed Brown static PetscErrorCode RHSJacobianP(TS ts,PetscReal t,Vec U,Mat A,void *ctx)
146c4762a1bSJed Brown {
147c4762a1bSJed Brown   PetscInt          row[] = {0,1},col[]={0};
148c4762a1bSJed Brown   PetscScalar       J[2][1];
149c4762a1bSJed Brown   const PetscScalar *u;
150c4762a1bSJed Brown 
151c4762a1bSJed Brown   PetscFunctionBeginUser;
1525f80ce2aSJacob Faibussowitsch   CHKERRQ(VecGetArrayRead(U,&u));
153c4762a1bSJed Brown   J[0][0] = 0;
154c4762a1bSJed Brown   J[1][0] = (1.-u[0]*u[0])*u[1]-u[0];
1555f80ce2aSJacob Faibussowitsch   CHKERRQ(MatSetValues(A,2,row,1,col,&J[0][0],INSERT_VALUES));
1565f80ce2aSJacob Faibussowitsch   CHKERRQ(MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY));
1575f80ce2aSJacob Faibussowitsch   CHKERRQ(MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY));
1585f80ce2aSJacob Faibussowitsch   CHKERRQ(VecRestoreArrayRead(U,&u));
159c4762a1bSJed Brown   PetscFunctionReturn(0);
160c4762a1bSJed Brown }
161c4762a1bSJed Brown 
162c4762a1bSJed Brown /* Monitor timesteps and use interpolation to output at integer multiples of 0.1 */
163c4762a1bSJed Brown static PetscErrorCode Monitor(TS ts,PetscInt step,PetscReal t,Vec U,void *ctx)
164c4762a1bSJed Brown {
165c4762a1bSJed Brown   const PetscScalar *u;
166c4762a1bSJed Brown   PetscReal         tfinal, dt;
167c4762a1bSJed Brown   User              user = (User)ctx;
168c4762a1bSJed Brown   Vec               interpolatedU;
169c4762a1bSJed Brown 
170c4762a1bSJed Brown   PetscFunctionBeginUser;
1715f80ce2aSJacob Faibussowitsch   CHKERRQ(TSGetTimeStep(ts,&dt));
1725f80ce2aSJacob Faibussowitsch   CHKERRQ(TSGetMaxTime(ts,&tfinal));
173c4762a1bSJed Brown 
174c4762a1bSJed Brown   while (user->next_output <= t && user->next_output <= tfinal) {
1755f80ce2aSJacob Faibussowitsch     CHKERRQ(VecDuplicate(U,&interpolatedU));
1765f80ce2aSJacob Faibussowitsch     CHKERRQ(TSInterpolate(ts,user->next_output,interpolatedU));
1775f80ce2aSJacob Faibussowitsch     CHKERRQ(VecGetArrayRead(interpolatedU,&u));
178*b122ec5aSJacob Faibussowitsch     CHKERRQ(PetscPrintf(PETSC_COMM_WORLD,"[%g] %D TS %g (dt = %g) X %g %g\n",
179c4762a1bSJed Brown                         (double)user->next_output,step,(double)t,(double)dt,(double)PetscRealPart(u[0]),
180*b122ec5aSJacob Faibussowitsch                         (double)PetscRealPart(u[1])));
1815f80ce2aSJacob Faibussowitsch     CHKERRQ(VecRestoreArrayRead(interpolatedU,&u));
1825f80ce2aSJacob Faibussowitsch     CHKERRQ(VecDestroy(&interpolatedU));
183c4762a1bSJed Brown     user->next_output += 0.1;
184c4762a1bSJed Brown   }
185c4762a1bSJed Brown   PetscFunctionReturn(0);
186c4762a1bSJed Brown }
187c4762a1bSJed Brown 
188c4762a1bSJed Brown int main(int argc,char **argv)
189c4762a1bSJed Brown {
190c4762a1bSJed Brown   TS             ts;
191c4762a1bSJed Brown   PetscBool      monitor = PETSC_FALSE,implicitform = PETSC_TRUE;
192c4762a1bSJed Brown   PetscScalar    *x_ptr,*y_ptr,derp;
193c4762a1bSJed Brown   PetscMPIInt    size;
194c4762a1bSJed Brown   struct _n_User user;
195c4762a1bSJed Brown 
196c4762a1bSJed Brown   /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
197c4762a1bSJed Brown      Initialize program
198c4762a1bSJed Brown      - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */
199*b122ec5aSJacob Faibussowitsch   CHKERRQ(PetscInitialize(&argc,&argv,NULL,help));
2005f80ce2aSJacob Faibussowitsch   CHKERRMPI(MPI_Comm_size(PETSC_COMM_WORLD,&size));
2013c633725SBarry Smith   PetscCheck(size == 1,PETSC_COMM_WORLD,PETSC_ERR_WRONG_MPI_SIZE,"This is a uniprocessor example only!");
202c4762a1bSJed Brown 
203c4762a1bSJed Brown   /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
204c4762a1bSJed Brown     Set runtime options
205c4762a1bSJed Brown     - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */
206c4762a1bSJed Brown   user.next_output = 0.0;
207c4762a1bSJed Brown   user.mu          = 1.0e3;
208c4762a1bSJed Brown   user.steps       = 0;
209c4762a1bSJed Brown   user.ftime       = 0.5;
2105f80ce2aSJacob Faibussowitsch   CHKERRQ(PetscOptionsGetBool(NULL,NULL,"-monitor",&monitor,NULL));
2115f80ce2aSJacob Faibussowitsch   CHKERRQ(PetscOptionsGetReal(NULL,NULL,"-mu",&user.mu,NULL));
2125f80ce2aSJacob Faibussowitsch   CHKERRQ(PetscOptionsGetBool(NULL,NULL,"-implicitform",&implicitform,NULL));
213c4762a1bSJed Brown 
214c4762a1bSJed Brown   /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
215c4762a1bSJed Brown     Create necessary matrix and vectors, solve same ODE on every process
216c4762a1bSJed Brown     - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */
2175f80ce2aSJacob Faibussowitsch   CHKERRQ(MatCreate(PETSC_COMM_WORLD,&user.A));
2185f80ce2aSJacob Faibussowitsch   CHKERRQ(MatSetSizes(user.A,PETSC_DECIDE,PETSC_DECIDE,2,2));
2195f80ce2aSJacob Faibussowitsch   CHKERRQ(MatSetFromOptions(user.A));
2205f80ce2aSJacob Faibussowitsch   CHKERRQ(MatSetUp(user.A));
2215f80ce2aSJacob Faibussowitsch   CHKERRQ(MatCreateVecs(user.A,&user.U,NULL));
222c4762a1bSJed Brown 
2235f80ce2aSJacob Faibussowitsch   CHKERRQ(MatCreate(PETSC_COMM_WORLD,&user.Jacp));
2245f80ce2aSJacob Faibussowitsch   CHKERRQ(MatSetSizes(user.Jacp,PETSC_DECIDE,PETSC_DECIDE,2,1));
2255f80ce2aSJacob Faibussowitsch   CHKERRQ(MatSetFromOptions(user.Jacp));
2265f80ce2aSJacob Faibussowitsch   CHKERRQ(MatSetUp(user.Jacp));
227c4762a1bSJed Brown 
228c4762a1bSJed Brown   /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
229c4762a1bSJed Brown      Create timestepping solver context
230c4762a1bSJed Brown    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */
2315f80ce2aSJacob Faibussowitsch   CHKERRQ(TSCreate(PETSC_COMM_WORLD,&ts));
2325f80ce2aSJacob Faibussowitsch   CHKERRQ(TSSetEquationType(ts,TS_EQ_ODE_EXPLICIT)); /* less Jacobian evaluations when adjoint BEuler is used, otherwise no effect */
233c4762a1bSJed Brown   if (implicitform) {
2345f80ce2aSJacob Faibussowitsch     CHKERRQ(TSSetIFunction(ts,NULL,IFunction,&user));
2355f80ce2aSJacob Faibussowitsch     CHKERRQ(TSSetIJacobian(ts,user.A,user.A,IJacobian,&user));
2365f80ce2aSJacob Faibussowitsch     CHKERRQ(TSSetType(ts,TSCN));
237c4762a1bSJed Brown   } else {
2385f80ce2aSJacob Faibussowitsch     CHKERRQ(TSSetRHSFunction(ts,NULL,RHSFunction,&user));
2395f80ce2aSJacob Faibussowitsch     CHKERRQ(TSSetRHSJacobian(ts,user.A,user.A,RHSJacobian,&user));
2405f80ce2aSJacob Faibussowitsch     CHKERRQ(TSSetType(ts,TSRK));
241c4762a1bSJed Brown   }
2425f80ce2aSJacob Faibussowitsch   CHKERRQ(TSSetRHSJacobianP(ts,user.Jacp,RHSJacobianP,&user));
2435f80ce2aSJacob Faibussowitsch   CHKERRQ(TSSetMaxTime(ts,user.ftime));
2445f80ce2aSJacob Faibussowitsch   CHKERRQ(TSSetTimeStep(ts,0.001));
2455f80ce2aSJacob Faibussowitsch   CHKERRQ(TSSetExactFinalTime(ts,TS_EXACTFINALTIME_MATCHSTEP));
246*b122ec5aSJacob Faibussowitsch   if (monitor) CHKERRQ(TSMonitorSet(ts,Monitor,&user,NULL));
247c4762a1bSJed Brown 
248c4762a1bSJed Brown   /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
249c4762a1bSJed Brown      Set initial conditions
250c4762a1bSJed Brown    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */
2515f80ce2aSJacob Faibussowitsch   CHKERRQ(VecGetArray(user.U,&x_ptr));
252c4762a1bSJed Brown   x_ptr[0] = 2.0;
253c4762a1bSJed Brown   x_ptr[1] = -2.0/3.0 + 10.0/(81.0*user.mu) - 292.0/(2187.0*user.mu*user.mu);
2545f80ce2aSJacob Faibussowitsch   CHKERRQ(VecRestoreArray(user.U,&x_ptr));
2555f80ce2aSJacob Faibussowitsch   CHKERRQ(TSSetTimeStep(ts,0.001));
256c4762a1bSJed Brown 
257c4762a1bSJed Brown   /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
258c4762a1bSJed Brown     Save trajectory of solution so that TSAdjointSolve() may be used
259c4762a1bSJed Brown    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */
2605f80ce2aSJacob Faibussowitsch   CHKERRQ(TSSetSaveTrajectory(ts));
261c4762a1bSJed Brown 
262c4762a1bSJed Brown   /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
263c4762a1bSJed Brown      Set runtime options
264c4762a1bSJed Brown    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */
2655f80ce2aSJacob Faibussowitsch   CHKERRQ(TSSetFromOptions(ts));
266c4762a1bSJed Brown 
2675f80ce2aSJacob Faibussowitsch   CHKERRQ(TSSolve(ts,user.U));
2685f80ce2aSJacob Faibussowitsch   CHKERRQ(TSGetSolveTime(ts,&user.ftime));
2695f80ce2aSJacob Faibussowitsch   CHKERRQ(TSGetStepNumber(ts,&user.steps));
270c4762a1bSJed Brown 
271c4762a1bSJed Brown   /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
272c4762a1bSJed Brown      Adjoint model starts here
273c4762a1bSJed Brown      - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */
2745f80ce2aSJacob Faibussowitsch   CHKERRQ(MatCreateVecs(user.A,&user.lambda[0],NULL));
275c4762a1bSJed Brown   /* Set initial conditions for the adjoint integration */
2765f80ce2aSJacob Faibussowitsch   CHKERRQ(VecGetArray(user.lambda[0],&y_ptr));
277c4762a1bSJed Brown   y_ptr[0] = 1.0; y_ptr[1] = 0.0;
2785f80ce2aSJacob Faibussowitsch   CHKERRQ(VecRestoreArray(user.lambda[0],&y_ptr));
2795f80ce2aSJacob Faibussowitsch   CHKERRQ(MatCreateVecs(user.A,&user.lambda[1],NULL));
2805f80ce2aSJacob Faibussowitsch   CHKERRQ(VecGetArray(user.lambda[1],&y_ptr));
281c4762a1bSJed Brown   y_ptr[0] = 0.0; y_ptr[1] = 1.0;
2825f80ce2aSJacob Faibussowitsch   CHKERRQ(VecRestoreArray(user.lambda[1],&y_ptr));
283c4762a1bSJed Brown 
2845f80ce2aSJacob Faibussowitsch   CHKERRQ(MatCreateVecs(user.Jacp,&user.mup[0],NULL));
2855f80ce2aSJacob Faibussowitsch   CHKERRQ(VecGetArray(user.mup[0],&x_ptr));
286c4762a1bSJed Brown   x_ptr[0] = 0.0;
2875f80ce2aSJacob Faibussowitsch   CHKERRQ(VecRestoreArray(user.mup[0],&x_ptr));
2885f80ce2aSJacob Faibussowitsch   CHKERRQ(MatCreateVecs(user.Jacp,&user.mup[1],NULL));
2895f80ce2aSJacob Faibussowitsch   CHKERRQ(VecGetArray(user.mup[1],&x_ptr));
290c4762a1bSJed Brown   x_ptr[0] = 0.0;
2915f80ce2aSJacob Faibussowitsch   CHKERRQ(VecRestoreArray(user.mup[1],&x_ptr));
292c4762a1bSJed Brown 
2935f80ce2aSJacob Faibussowitsch   CHKERRQ(TSSetCostGradients(ts,2,user.lambda,user.mup));
294c4762a1bSJed Brown 
2955f80ce2aSJacob Faibussowitsch   CHKERRQ(TSAdjointSolve(ts));
296c4762a1bSJed Brown 
2975f80ce2aSJacob Faibussowitsch   CHKERRQ(PetscPrintf(PETSC_COMM_WORLD,"\n sensitivity wrt initial conditions: d[y(tf)]/d[y0]  d[y(tf)]/d[z0]\n"));
2985f80ce2aSJacob Faibussowitsch   CHKERRQ(VecView(user.lambda[0],PETSC_VIEWER_STDOUT_WORLD));
2995f80ce2aSJacob Faibussowitsch   CHKERRQ(PetscPrintf(PETSC_COMM_WORLD,"\n sensitivity wrt initial conditions: d[z(tf)]/d[y0]  d[z(tf)]/d[z0]\n"));
3005f80ce2aSJacob Faibussowitsch   CHKERRQ(VecView(user.lambda[1],PETSC_VIEWER_STDOUT_WORLD));
301c4762a1bSJed Brown 
3025f80ce2aSJacob Faibussowitsch   CHKERRQ(VecGetArray(user.mup[0],&x_ptr));
3035f80ce2aSJacob Faibussowitsch   CHKERRQ(VecGetArray(user.lambda[0],&y_ptr));
304c4762a1bSJed Brown   derp = y_ptr[1]*(-10.0/(81.0*user.mu*user.mu)+2.0*292.0/(2187.0*user.mu*user.mu*user.mu))+x_ptr[0];
3055f80ce2aSJacob Faibussowitsch   CHKERRQ(VecRestoreArray(user.mup[0],&x_ptr));
3065f80ce2aSJacob Faibussowitsch   CHKERRQ(VecRestoreArray(user.lambda[0],&y_ptr));
3075f80ce2aSJacob Faibussowitsch   CHKERRQ(PetscPrintf(PETSC_COMM_WORLD,"\n sensitivity wrt parameters: d[y(tf)]/d[mu]\n%g\n",(double)PetscRealPart(derp)));
308c4762a1bSJed Brown 
3095f80ce2aSJacob Faibussowitsch   CHKERRQ(VecGetArray(user.mup[1],&x_ptr));
3105f80ce2aSJacob Faibussowitsch   CHKERRQ(VecGetArray(user.lambda[1],&y_ptr));
311c4762a1bSJed Brown   derp = y_ptr[1]*(-10.0/(81.0*user.mu*user.mu)+2.0*292.0/(2187.0*user.mu*user.mu*user.mu))+x_ptr[0];
3125f80ce2aSJacob Faibussowitsch   CHKERRQ(VecRestoreArray(user.mup[1],&x_ptr));
3135f80ce2aSJacob Faibussowitsch   CHKERRQ(VecRestoreArray(user.lambda[1],&y_ptr));
3145f80ce2aSJacob Faibussowitsch   CHKERRQ(PetscPrintf(PETSC_COMM_WORLD,"\n sensivitity wrt parameters: d[z(tf)]/d[mu]\n%g\n",(double)PetscRealPart(derp)));
315c4762a1bSJed Brown 
316c4762a1bSJed Brown   /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
317c4762a1bSJed Brown      Free work space.  All PETSc objects should be destroyed when they
318c4762a1bSJed Brown      are no longer needed.
319c4762a1bSJed Brown    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */
3205f80ce2aSJacob Faibussowitsch   CHKERRQ(MatDestroy(&user.A));
3215f80ce2aSJacob Faibussowitsch   CHKERRQ(MatDestroy(&user.Jacp));
3225f80ce2aSJacob Faibussowitsch   CHKERRQ(VecDestroy(&user.U));
3235f80ce2aSJacob Faibussowitsch   CHKERRQ(VecDestroy(&user.lambda[0]));
3245f80ce2aSJacob Faibussowitsch   CHKERRQ(VecDestroy(&user.lambda[1]));
3255f80ce2aSJacob Faibussowitsch   CHKERRQ(VecDestroy(&user.mup[0]));
3265f80ce2aSJacob Faibussowitsch   CHKERRQ(VecDestroy(&user.mup[1]));
3275f80ce2aSJacob Faibussowitsch   CHKERRQ(TSDestroy(&ts));
328c4762a1bSJed Brown 
329*b122ec5aSJacob Faibussowitsch   CHKERRQ(PetscFinalize());
330*b122ec5aSJacob Faibussowitsch   return 0;
331c4762a1bSJed Brown }
332c4762a1bSJed Brown 
333c4762a1bSJed Brown /*TEST
334c4762a1bSJed Brown 
335c4762a1bSJed Brown     test:
336c4762a1bSJed Brown       requires: revolve
337c4762a1bSJed Brown       args: -monitor 0 -ts_type theta -ts_theta_endpoint -ts_theta_theta 0.5 -viewer_binary_skip_info -ts_dt 0.001 -mu 100000
338c4762a1bSJed Brown 
339c4762a1bSJed Brown     test:
340c4762a1bSJed Brown       suffix: 2
341c4762a1bSJed Brown       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_solution_only
342c4762a1bSJed Brown 
343c4762a1bSJed Brown     test:
344c4762a1bSJed Brown       suffix: 3
345c4762a1bSJed Brown       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_solution_only 0
346c4762a1bSJed Brown       output_file: output/ex20adj_2.out
347c4762a1bSJed Brown 
348c4762a1bSJed Brown     test:
349c4762a1bSJed Brown       suffix: 4
350c4762a1bSJed Brown       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_stride 5 -ts_trajectory_solution_only -ts_trajectory_save_stack
351c4762a1bSJed Brown       output_file: output/ex20adj_2.out
352c4762a1bSJed Brown 
353c4762a1bSJed Brown     test:
354c4762a1bSJed Brown       suffix: 5
355c4762a1bSJed Brown       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_stride 5 -ts_trajectory_solution_only 0 -ts_trajectory_save_stack
356c4762a1bSJed Brown       output_file: output/ex20adj_2.out
357c4762a1bSJed Brown 
358c4762a1bSJed Brown     test:
359c4762a1bSJed Brown       suffix: 6
360c4762a1bSJed Brown       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_stride 5 -ts_trajectory_solution_only -ts_trajectory_save_stack 0
361c4762a1bSJed Brown       output_file: output/ex20adj_2.out
362c4762a1bSJed Brown 
363c4762a1bSJed Brown     test:
364c4762a1bSJed Brown       suffix: 7
365c4762a1bSJed Brown       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_stride 5 -ts_trajectory_solution_only 0 -ts_trajectory_save_stack 0
366c4762a1bSJed Brown       output_file: output/ex20adj_2.out
367c4762a1bSJed Brown 
368c4762a1bSJed Brown     test:
369c4762a1bSJed Brown       suffix: 8
37060f0b76eSHong Zhang       requires: revolve !cams
371c4762a1bSJed Brown       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 5 -ts_trajectory_solution_only -ts_trajectory_monitor
372c4762a1bSJed Brown       output_file: output/ex20adj_3.out
373c4762a1bSJed Brown 
374c4762a1bSJed Brown     test:
375c4762a1bSJed Brown       suffix: 9
37660f0b76eSHong Zhang       requires: revolve !cams
377c4762a1bSJed Brown       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 5 -ts_trajectory_solution_only 0 -ts_trajectory_monitor
378c4762a1bSJed Brown       output_file: output/ex20adj_4.out
379c4762a1bSJed Brown 
380c4762a1bSJed Brown     test:
381c4762a1bSJed Brown       requires: revolve
382c4762a1bSJed Brown       suffix: 10
383c4762a1bSJed Brown       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 5 -ts_trajectory_revolve_online -ts_trajectory_solution_only
384c4762a1bSJed Brown       output_file: output/ex20adj_2.out
385c4762a1bSJed Brown 
386c4762a1bSJed Brown     test:
387c4762a1bSJed Brown       requires: revolve
388c4762a1bSJed Brown       suffix: 11
389c4762a1bSJed Brown       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 5 -ts_trajectory_revolve_online -ts_trajectory_solution_only 0
390c4762a1bSJed Brown       output_file: output/ex20adj_2.out
391c4762a1bSJed Brown 
392c4762a1bSJed Brown     test:
393c4762a1bSJed Brown       suffix: 12
394c4762a1bSJed Brown       requires: revolve
395c4762a1bSJed Brown       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_max_cps_disk 8 -ts_trajectory_solution_only
396c4762a1bSJed Brown       output_file: output/ex20adj_2.out
397c4762a1bSJed Brown 
398c4762a1bSJed Brown     test:
399c4762a1bSJed Brown       suffix: 13
400c4762a1bSJed Brown       requires: revolve
401c4762a1bSJed Brown       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_max_cps_disk 8 -ts_trajectory_solution_only 0
402c4762a1bSJed Brown       output_file: output/ex20adj_2.out
403c4762a1bSJed Brown 
404c4762a1bSJed Brown     test:
405c4762a1bSJed Brown       suffix: 14
406c4762a1bSJed Brown       requires: revolve
407c4762a1bSJed Brown       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_stride 5 -ts_trajectory_solution_only -ts_trajectory_save_stack
408c4762a1bSJed Brown       output_file: output/ex20adj_2.out
409c4762a1bSJed Brown 
410c4762a1bSJed Brown     test:
411c4762a1bSJed Brown       suffix: 15
412c4762a1bSJed Brown       requires: revolve
413c4762a1bSJed Brown       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_stride 5 -ts_trajectory_solution_only -ts_trajectory_save_stack 0
414c4762a1bSJed Brown       output_file: output/ex20adj_2.out
415c4762a1bSJed Brown 
416c4762a1bSJed Brown     test:
417c4762a1bSJed Brown       suffix: 16
418c4762a1bSJed Brown       requires: revolve
419c4762a1bSJed Brown       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_stride 5 -ts_trajectory_solution_only 0 -ts_trajectory_save_stack
420c4762a1bSJed Brown       output_file: output/ex20adj_2.out
421c4762a1bSJed Brown 
422c4762a1bSJed Brown     test:
423c4762a1bSJed Brown       suffix: 17
424c4762a1bSJed Brown       requires: revolve
425c4762a1bSJed Brown       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_stride 5 -ts_trajectory_solution_only 0 -ts_trajectory_save_stack 0
426c4762a1bSJed Brown       output_file: output/ex20adj_2.out
427c4762a1bSJed Brown 
428c4762a1bSJed Brown     test:
429c4762a1bSJed Brown       suffix: 18
430c4762a1bSJed Brown       requires: revolve
431c4762a1bSJed Brown       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_max_cps_disk 8 -ts_trajectory_stride 5 -ts_trajectory_solution_only -ts_trajectory_save_stack
432c4762a1bSJed Brown       output_file: output/ex20adj_2.out
433c4762a1bSJed Brown 
434c4762a1bSJed Brown     test:
435c4762a1bSJed Brown       suffix: 19
436c4762a1bSJed Brown       requires: revolve
437c4762a1bSJed Brown       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_max_cps_disk 8 -ts_trajectory_stride 5 -ts_trajectory_solution_only 0 -ts_trajectory_save_stack
438c4762a1bSJed Brown       output_file: output/ex20adj_2.out
439c4762a1bSJed Brown 
440c4762a1bSJed Brown     test:
441c4762a1bSJed Brown       suffix: 20
442c4762a1bSJed Brown       requires: revolve
443c4762a1bSJed Brown       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_max_cps_disk 8 -ts_trajectory_solution_only 0
444c4762a1bSJed Brown       output_file: output/ex20adj_2.out
445c4762a1bSJed Brown 
446c4762a1bSJed Brown     test:
447c4762a1bSJed Brown       suffix: 21
448c4762a1bSJed Brown       requires: revolve
449c4762a1bSJed Brown       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_max_cps_disk 8 -ts_trajectory_stride 5 -ts_trajectory_solution_only 0 -ts_trajectory_save_stack 0
450c4762a1bSJed Brown       output_file: output/ex20adj_2.out
451c4762a1bSJed Brown 
452c4762a1bSJed Brown     test:
453c4762a1bSJed Brown       suffix: 22
454c4762a1bSJed Brown       args: -ts_type beuler -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_solution_only
455c4762a1bSJed Brown       output_file: output/ex20adj_2.out
456cc4f23bcSHong Zhang 
457cc4f23bcSHong Zhang     test:
458cc4f23bcSHong Zhang       suffix: 23
459cc4f23bcSHong Zhang       requires: cams
460533251d3SHong Zhang       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_units_ram 5 -ts_trajectory_solution_only -ts_trajectory_monitor -ts_trajectory_memory_type cams
46160f0b76eSHong Zhang       output_file: output/ex20adj_5.out
462cc4f23bcSHong Zhang 
463cc4f23bcSHong Zhang     test:
464cc4f23bcSHong Zhang       suffix: 24
465cc4f23bcSHong Zhang       requires: cams
466533251d3SHong Zhang       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_units_ram 5 -ts_trajectory_solution_only 0 -ts_trajectory_monitor -ts_trajectory_memory_type cams
46760f0b76eSHong Zhang       output_file: output/ex20adj_6.out
468cc4f23bcSHong Zhang 
469c4762a1bSJed Brown TEST*/
470