xref: /petsc/src/ts/tutorials/ex20adj.c (revision c4762a1b19cd2af06abeed90e8f9d34fb975dd94)
1*c4762a1bSJed Brown static char help[] = "Performs adjoint sensitivity analysis for the van der Pol equation.\n";
2*c4762a1bSJed Brown 
3*c4762a1bSJed Brown /*
4*c4762a1bSJed Brown    Concepts: TS^time-dependent nonlinear problems
5*c4762a1bSJed Brown    Concepts: TS^van der Pol equation DAE equivalent
6*c4762a1bSJed Brown    Concepts: TS^adjoint sensitivity analysis
7*c4762a1bSJed Brown    Processors: 1
8*c4762a1bSJed Brown */
9*c4762a1bSJed Brown /* ------------------------------------------------------------------------
10*c4762a1bSJed Brown 
11*c4762a1bSJed Brown    This program solves the van der Pol DAE ODE equivalent
12*c4762a1bSJed Brown       [ u_1' ] = [          u_2                ]  (2)
13*c4762a1bSJed Brown       [ u_2' ]   [ \mu ((1 - u_1^2) u_2 - u_1) ]
14*c4762a1bSJed Brown    on the domain 0 <= x <= 1, with the boundary conditions
15*c4762a1bSJed Brown        u_1(0) = 2, u_2(0) = - 2/3 +10/(81*\mu) - 292/(2187*\mu^2),
16*c4762a1bSJed Brown    and
17*c4762a1bSJed Brown        \mu = 10^6 ( y'(0) ~ -0.6666665432100101).,
18*c4762a1bSJed Brown    and computes the sensitivities of the final solution w.r.t. initial conditions and parameter \mu with the implicit theta method and its discrete adjoint.
19*c4762a1bSJed Brown 
20*c4762a1bSJed Brown    Notes:
21*c4762a1bSJed Brown    This code demonstrates the TSAdjoint interface to a DAE system.
22*c4762a1bSJed Brown 
23*c4762a1bSJed Brown    The user provides the implicit right-hand-side function
24*c4762a1bSJed Brown    [ G(u',u,t) ] = [u' - f(u,t)] = [ u_1'] - [        u_2             ]
25*c4762a1bSJed Brown                                    [ u_2']   [ \mu ((1-u_1^2)u_2-u_1) ]
26*c4762a1bSJed Brown 
27*c4762a1bSJed Brown    and the Jacobian of G (from the PETSc user manual)
28*c4762a1bSJed Brown 
29*c4762a1bSJed Brown               dG   dG
30*c4762a1bSJed Brown    J(G) = a * -- + --
31*c4762a1bSJed Brown               du'  du
32*c4762a1bSJed Brown 
33*c4762a1bSJed Brown    and the JacobianP of the explicit right-hand side of (2) f(u,t) ( which is equivalent to -G(0,u,t) ).
34*c4762a1bSJed Brown    df   [       0               ]
35*c4762a1bSJed Brown    -- = [                       ]
36*c4762a1bSJed Brown    dp   [ (1 - u_1^2) u_2 - u_1 ].
37*c4762a1bSJed Brown 
38*c4762a1bSJed Brown    See ex20.c for more details on the Jacobian.
39*c4762a1bSJed Brown 
40*c4762a1bSJed Brown   ------------------------------------------------------------------------- */
41*c4762a1bSJed Brown #include <petscts.h>
42*c4762a1bSJed Brown #include <petsctao.h>
43*c4762a1bSJed Brown 
44*c4762a1bSJed Brown typedef struct _n_User *User;
45*c4762a1bSJed Brown struct _n_User {
46*c4762a1bSJed Brown   PetscReal mu;
47*c4762a1bSJed Brown   PetscReal next_output;
48*c4762a1bSJed Brown 
49*c4762a1bSJed Brown   /* Sensitivity analysis support */
50*c4762a1bSJed Brown   PetscInt  steps;
51*c4762a1bSJed Brown   PetscReal ftime;
52*c4762a1bSJed Brown   Mat       A;                   /* Jacobian matrix */
53*c4762a1bSJed Brown   Mat       Jacp;                /* JacobianP matrix */
54*c4762a1bSJed Brown   Vec       U,lambda[2],mup[2];  /* adjoint variables */
55*c4762a1bSJed Brown };
56*c4762a1bSJed Brown 
57*c4762a1bSJed Brown /* ----------------------- Explicit form of the ODE  -------------------- */
58*c4762a1bSJed Brown 
59*c4762a1bSJed Brown static PetscErrorCode RHSFunction(TS ts,PetscReal t,Vec U,Vec F,void *ctx)
60*c4762a1bSJed Brown {
61*c4762a1bSJed Brown   PetscErrorCode    ierr;
62*c4762a1bSJed Brown   User              user = (User)ctx;
63*c4762a1bSJed Brown   PetscScalar       *f;
64*c4762a1bSJed Brown   const PetscScalar *u;
65*c4762a1bSJed Brown 
66*c4762a1bSJed Brown   PetscFunctionBeginUser;
67*c4762a1bSJed Brown   ierr = VecGetArrayRead(U,&u);CHKERRQ(ierr);
68*c4762a1bSJed Brown   ierr = VecGetArray(F,&f);CHKERRQ(ierr);
69*c4762a1bSJed Brown   f[0] = u[1];
70*c4762a1bSJed Brown   f[1] = user->mu*((1.-u[0]*u[0])*u[1]-u[0]);
71*c4762a1bSJed Brown   ierr = VecRestoreArrayRead(U,&u);CHKERRQ(ierr);
72*c4762a1bSJed Brown   ierr = VecRestoreArray(F,&f);CHKERRQ(ierr);
73*c4762a1bSJed Brown   PetscFunctionReturn(0);
74*c4762a1bSJed Brown }
75*c4762a1bSJed Brown 
76*c4762a1bSJed Brown static PetscErrorCode RHSJacobian(TS ts,PetscReal t,Vec U,Mat A,Mat B,void *ctx)
77*c4762a1bSJed Brown {
78*c4762a1bSJed Brown   PetscErrorCode    ierr;
79*c4762a1bSJed Brown   User              user = (User)ctx;
80*c4762a1bSJed Brown   PetscReal         mu   = user->mu;
81*c4762a1bSJed Brown   PetscInt          rowcol[] = {0,1};
82*c4762a1bSJed Brown   PetscScalar       J[2][2];
83*c4762a1bSJed Brown   const PetscScalar *u;
84*c4762a1bSJed Brown 
85*c4762a1bSJed Brown   PetscFunctionBeginUser;
86*c4762a1bSJed Brown   ierr = VecGetArrayRead(U,&u);CHKERRQ(ierr);
87*c4762a1bSJed Brown   J[0][0] = 0;
88*c4762a1bSJed Brown   J[1][0] = -mu*(2.0*u[1]*u[0]+1.);
89*c4762a1bSJed Brown   J[0][1] = 1.0;
90*c4762a1bSJed Brown   J[1][1] = mu*(1.0-u[0]*u[0]);
91*c4762a1bSJed Brown   ierr    = MatSetValues(A,2,rowcol,2,rowcol,&J[0][0],INSERT_VALUES);CHKERRQ(ierr);
92*c4762a1bSJed Brown   ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
93*c4762a1bSJed Brown   ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
94*c4762a1bSJed Brown   if (A != B) {
95*c4762a1bSJed Brown     ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
96*c4762a1bSJed Brown     ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
97*c4762a1bSJed Brown   }
98*c4762a1bSJed Brown   ierr = VecRestoreArrayRead(U,&u);CHKERRQ(ierr);
99*c4762a1bSJed Brown   PetscFunctionReturn(0);
100*c4762a1bSJed Brown }
101*c4762a1bSJed Brown 
102*c4762a1bSJed Brown /* ----------------------- Implicit form of the ODE  -------------------- */
103*c4762a1bSJed Brown 
104*c4762a1bSJed Brown static PetscErrorCode IFunction(TS ts,PetscReal t,Vec U,Vec Udot,Vec F,void *ctx)
105*c4762a1bSJed Brown {
106*c4762a1bSJed Brown   PetscErrorCode    ierr;
107*c4762a1bSJed Brown   User              user = (User)ctx;
108*c4762a1bSJed Brown   const PetscScalar *u,*udot;
109*c4762a1bSJed Brown   PetscScalar       *f;
110*c4762a1bSJed Brown 
111*c4762a1bSJed Brown   PetscFunctionBeginUser;
112*c4762a1bSJed Brown   ierr = VecGetArrayRead(U,&u);CHKERRQ(ierr);
113*c4762a1bSJed Brown   ierr = VecGetArrayRead(Udot,&udot);CHKERRQ(ierr);
114*c4762a1bSJed Brown   ierr = VecGetArray(F,&f);CHKERRQ(ierr);
115*c4762a1bSJed Brown   f[0] = udot[0] - u[1];
116*c4762a1bSJed Brown   f[1] = udot[1] - user->mu*((1.0-u[0]*u[0])*u[1] - u[0]);
117*c4762a1bSJed Brown   ierr = VecRestoreArrayRead(U,&u);CHKERRQ(ierr);
118*c4762a1bSJed Brown   ierr = VecRestoreArrayRead(Udot,&udot);CHKERRQ(ierr);
119*c4762a1bSJed Brown   ierr = VecRestoreArray(F,&f);CHKERRQ(ierr);
120*c4762a1bSJed Brown   PetscFunctionReturn(0);
121*c4762a1bSJed Brown }
122*c4762a1bSJed Brown 
123*c4762a1bSJed Brown static PetscErrorCode IJacobian(TS ts,PetscReal t,Vec U,Vec Udot,PetscReal a,Mat A,Mat B,void *ctx)
124*c4762a1bSJed Brown {
125*c4762a1bSJed Brown   PetscErrorCode    ierr;
126*c4762a1bSJed Brown   User              user     = (User)ctx;
127*c4762a1bSJed Brown   PetscInt          rowcol[] = {0,1};
128*c4762a1bSJed Brown   PetscScalar       J[2][2];
129*c4762a1bSJed Brown   const PetscScalar *u;
130*c4762a1bSJed Brown 
131*c4762a1bSJed Brown   PetscFunctionBeginUser;
132*c4762a1bSJed Brown   ierr    = VecGetArrayRead(U,&u);CHKERRQ(ierr);
133*c4762a1bSJed Brown 
134*c4762a1bSJed Brown   J[0][0] = a;     J[0][1] =  -1.0;
135*c4762a1bSJed Brown   J[1][0] = user->mu*(2.0*u[0]*u[1] + 1.0);   J[1][1] = a - user->mu*(1.0-u[0]*u[0]);
136*c4762a1bSJed Brown 
137*c4762a1bSJed Brown   ierr    = MatSetValues(B,2,rowcol,2,rowcol,&J[0][0],INSERT_VALUES);CHKERRQ(ierr);
138*c4762a1bSJed Brown   ierr    = VecRestoreArrayRead(U,&u);CHKERRQ(ierr);
139*c4762a1bSJed Brown 
140*c4762a1bSJed Brown   ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
141*c4762a1bSJed Brown   ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
142*c4762a1bSJed Brown   if (B && A != B) {
143*c4762a1bSJed Brown     ierr = MatAssemblyBegin(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
144*c4762a1bSJed Brown     ierr = MatAssemblyEnd(B,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
145*c4762a1bSJed Brown   }
146*c4762a1bSJed Brown   PetscFunctionReturn(0);
147*c4762a1bSJed Brown }
148*c4762a1bSJed Brown 
149*c4762a1bSJed Brown static PetscErrorCode RHSJacobianP(TS ts,PetscReal t,Vec U,Mat A,void *ctx)
150*c4762a1bSJed Brown {
151*c4762a1bSJed Brown   PetscErrorCode    ierr;
152*c4762a1bSJed Brown   PetscInt          row[] = {0,1},col[]={0};
153*c4762a1bSJed Brown   PetscScalar       J[2][1];
154*c4762a1bSJed Brown   const PetscScalar *u;
155*c4762a1bSJed Brown 
156*c4762a1bSJed Brown   PetscFunctionBeginUser;
157*c4762a1bSJed Brown   ierr = VecGetArrayRead(U,&u);CHKERRQ(ierr);
158*c4762a1bSJed Brown   J[0][0] = 0;
159*c4762a1bSJed Brown   J[1][0] = (1.-u[0]*u[0])*u[1]-u[0];
160*c4762a1bSJed Brown   ierr    = MatSetValues(A,2,row,1,col,&J[0][0],INSERT_VALUES);CHKERRQ(ierr);
161*c4762a1bSJed Brown   ierr = MatAssemblyBegin(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
162*c4762a1bSJed Brown   ierr = MatAssemblyEnd(A,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
163*c4762a1bSJed Brown   ierr = VecRestoreArrayRead(U,&u);CHKERRQ(ierr);
164*c4762a1bSJed Brown   PetscFunctionReturn(0);
165*c4762a1bSJed Brown }
166*c4762a1bSJed Brown 
167*c4762a1bSJed Brown /* Monitor timesteps and use interpolation to output at integer multiples of 0.1 */
168*c4762a1bSJed Brown static PetscErrorCode Monitor(TS ts,PetscInt step,PetscReal t,Vec U,void *ctx)
169*c4762a1bSJed Brown {
170*c4762a1bSJed Brown   PetscErrorCode    ierr;
171*c4762a1bSJed Brown   const PetscScalar *u;
172*c4762a1bSJed Brown   PetscReal         tfinal, dt;
173*c4762a1bSJed Brown   User              user = (User)ctx;
174*c4762a1bSJed Brown   Vec               interpolatedU;
175*c4762a1bSJed Brown 
176*c4762a1bSJed Brown   PetscFunctionBeginUser;
177*c4762a1bSJed Brown   ierr = TSGetTimeStep(ts,&dt);CHKERRQ(ierr);
178*c4762a1bSJed Brown   ierr = TSGetMaxTime(ts,&tfinal);CHKERRQ(ierr);
179*c4762a1bSJed Brown 
180*c4762a1bSJed Brown   while (user->next_output <= t && user->next_output <= tfinal) {
181*c4762a1bSJed Brown     ierr = VecDuplicate(U,&interpolatedU);CHKERRQ(ierr);
182*c4762a1bSJed Brown     ierr = TSInterpolate(ts,user->next_output,interpolatedU);CHKERRQ(ierr);
183*c4762a1bSJed Brown     ierr = VecGetArrayRead(interpolatedU,&u);CHKERRQ(ierr);
184*c4762a1bSJed Brown     ierr = PetscPrintf(PETSC_COMM_WORLD,"[%g] %D TS %g (dt = %g) X %g %g\n",
185*c4762a1bSJed Brown                        (double)user->next_output,step,(double)t,(double)dt,(double)PetscRealPart(u[0]),
186*c4762a1bSJed Brown                        (double)PetscRealPart(u[1]));CHKERRQ(ierr);
187*c4762a1bSJed Brown     ierr = VecRestoreArrayRead(interpolatedU,&u);CHKERRQ(ierr);
188*c4762a1bSJed Brown     ierr = VecDestroy(&interpolatedU);CHKERRQ(ierr);
189*c4762a1bSJed Brown     user->next_output += 0.1;
190*c4762a1bSJed Brown   }
191*c4762a1bSJed Brown   PetscFunctionReturn(0);
192*c4762a1bSJed Brown }
193*c4762a1bSJed Brown 
194*c4762a1bSJed Brown int main(int argc,char **argv)
195*c4762a1bSJed Brown {
196*c4762a1bSJed Brown   TS             ts;
197*c4762a1bSJed Brown   PetscBool      monitor = PETSC_FALSE,implicitform = PETSC_TRUE;
198*c4762a1bSJed Brown   PetscScalar    *x_ptr,*y_ptr,derp;
199*c4762a1bSJed Brown   PetscMPIInt    size;
200*c4762a1bSJed Brown   struct _n_User user;
201*c4762a1bSJed Brown   PetscErrorCode ierr;
202*c4762a1bSJed Brown 
203*c4762a1bSJed Brown   /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
204*c4762a1bSJed Brown      Initialize program
205*c4762a1bSJed Brown      - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */
206*c4762a1bSJed Brown   ierr = PetscInitialize(&argc,&argv,NULL,help);if (ierr) return ierr;
207*c4762a1bSJed Brown   ierr = MPI_Comm_size(PETSC_COMM_WORLD,&size);CHKERRQ(ierr);
208*c4762a1bSJed Brown   if (size != 1) SETERRQ(PETSC_COMM_WORLD,PETSC_ERR_WRONG_MPI_SIZE,"This is a uniprocessor example only!");
209*c4762a1bSJed Brown 
210*c4762a1bSJed Brown   /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
211*c4762a1bSJed Brown     Set runtime options
212*c4762a1bSJed Brown     - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */
213*c4762a1bSJed Brown   user.next_output = 0.0;
214*c4762a1bSJed Brown   user.mu          = 1.0e3;
215*c4762a1bSJed Brown   user.steps       = 0;
216*c4762a1bSJed Brown   user.ftime       = 0.5;
217*c4762a1bSJed Brown   ierr = PetscOptionsGetBool(NULL,NULL,"-monitor",&monitor,NULL);CHKERRQ(ierr);
218*c4762a1bSJed Brown   ierr = PetscOptionsGetReal(NULL,NULL,"-mu",&user.mu,NULL);CHKERRQ(ierr);
219*c4762a1bSJed Brown   ierr = PetscOptionsGetBool(NULL,NULL,"-implicitform",&implicitform,NULL);CHKERRQ(ierr);
220*c4762a1bSJed Brown 
221*c4762a1bSJed Brown   /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
222*c4762a1bSJed Brown     Create necessary matrix and vectors, solve same ODE on every process
223*c4762a1bSJed Brown     - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */
224*c4762a1bSJed Brown   ierr = MatCreate(PETSC_COMM_WORLD,&user.A);CHKERRQ(ierr);
225*c4762a1bSJed Brown   ierr = MatSetSizes(user.A,PETSC_DECIDE,PETSC_DECIDE,2,2);CHKERRQ(ierr);
226*c4762a1bSJed Brown   ierr = MatSetFromOptions(user.A);CHKERRQ(ierr);
227*c4762a1bSJed Brown   ierr = MatSetUp(user.A);CHKERRQ(ierr);
228*c4762a1bSJed Brown   ierr = MatCreateVecs(user.A,&user.U,NULL);CHKERRQ(ierr);
229*c4762a1bSJed Brown 
230*c4762a1bSJed Brown   ierr = MatCreate(PETSC_COMM_WORLD,&user.Jacp);CHKERRQ(ierr);
231*c4762a1bSJed Brown   ierr = MatSetSizes(user.Jacp,PETSC_DECIDE,PETSC_DECIDE,2,1);CHKERRQ(ierr);
232*c4762a1bSJed Brown   ierr = MatSetFromOptions(user.Jacp);CHKERRQ(ierr);
233*c4762a1bSJed Brown   ierr = MatSetUp(user.Jacp);CHKERRQ(ierr);
234*c4762a1bSJed Brown 
235*c4762a1bSJed Brown   /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
236*c4762a1bSJed Brown      Create timestepping solver context
237*c4762a1bSJed Brown    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */
238*c4762a1bSJed Brown   ierr = TSCreate(PETSC_COMM_WORLD,&ts);CHKERRQ(ierr);
239*c4762a1bSJed Brown   ierr = TSSetEquationType(ts,TS_EQ_ODE_EXPLICIT);CHKERRQ(ierr); /* less Jacobian evaluations when adjoint BEuler is used, otherwise no effect */
240*c4762a1bSJed Brown   if (implicitform) {
241*c4762a1bSJed Brown     ierr = TSSetIFunction(ts,NULL,IFunction,&user);CHKERRQ(ierr);
242*c4762a1bSJed Brown     ierr = TSSetIJacobian(ts,user.A,user.A,IJacobian,&user);CHKERRQ(ierr);
243*c4762a1bSJed Brown     ierr = TSSetType(ts,TSCN);CHKERRQ(ierr);
244*c4762a1bSJed Brown   } else {
245*c4762a1bSJed Brown     ierr = TSSetRHSFunction(ts,NULL,RHSFunction,&user);CHKERRQ(ierr);
246*c4762a1bSJed Brown     ierr = TSSetRHSJacobian(ts,user.A,user.A,RHSJacobian,&user);CHKERRQ(ierr);
247*c4762a1bSJed Brown     ierr = TSSetType(ts,TSRK);CHKERRQ(ierr);
248*c4762a1bSJed Brown   }
249*c4762a1bSJed Brown   ierr = TSSetRHSJacobianP(ts,user.Jacp,RHSJacobianP,&user);CHKERRQ(ierr);
250*c4762a1bSJed Brown   ierr = TSSetMaxTime(ts,user.ftime);CHKERRQ(ierr);
251*c4762a1bSJed Brown   ierr = TSSetTimeStep(ts,0.001);CHKERRQ(ierr);
252*c4762a1bSJed Brown   ierr = TSSetExactFinalTime(ts,TS_EXACTFINALTIME_MATCHSTEP);CHKERRQ(ierr);
253*c4762a1bSJed Brown   if (monitor) {
254*c4762a1bSJed Brown     ierr = TSMonitorSet(ts,Monitor,&user,NULL);CHKERRQ(ierr);
255*c4762a1bSJed Brown   }
256*c4762a1bSJed Brown 
257*c4762a1bSJed Brown   /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
258*c4762a1bSJed Brown      Set initial conditions
259*c4762a1bSJed Brown    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */
260*c4762a1bSJed Brown   ierr = VecGetArray(user.U,&x_ptr);CHKERRQ(ierr);
261*c4762a1bSJed Brown   x_ptr[0] = 2.0;
262*c4762a1bSJed Brown   x_ptr[1] = -2.0/3.0 + 10.0/(81.0*user.mu) - 292.0/(2187.0*user.mu*user.mu);
263*c4762a1bSJed Brown   ierr = VecRestoreArray(user.U,&x_ptr);CHKERRQ(ierr);
264*c4762a1bSJed Brown   ierr = TSSetTimeStep(ts,0.001);CHKERRQ(ierr);
265*c4762a1bSJed Brown 
266*c4762a1bSJed Brown   /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
267*c4762a1bSJed Brown     Save trajectory of solution so that TSAdjointSolve() may be used
268*c4762a1bSJed Brown    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */
269*c4762a1bSJed Brown   ierr = TSSetSaveTrajectory(ts);CHKERRQ(ierr);
270*c4762a1bSJed Brown 
271*c4762a1bSJed Brown   /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
272*c4762a1bSJed Brown      Set runtime options
273*c4762a1bSJed Brown    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */
274*c4762a1bSJed Brown   ierr = TSSetFromOptions(ts);CHKERRQ(ierr);
275*c4762a1bSJed Brown 
276*c4762a1bSJed Brown   ierr = TSSolve(ts,user.U);CHKERRQ(ierr);
277*c4762a1bSJed Brown   ierr = TSGetSolveTime(ts,&user.ftime);CHKERRQ(ierr);
278*c4762a1bSJed Brown   ierr = TSGetStepNumber(ts,&user.steps);CHKERRQ(ierr);
279*c4762a1bSJed Brown 
280*c4762a1bSJed Brown   /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
281*c4762a1bSJed Brown      Adjoint model starts here
282*c4762a1bSJed Brown      - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */
283*c4762a1bSJed Brown   ierr = MatCreateVecs(user.A,&user.lambda[0],NULL);CHKERRQ(ierr);
284*c4762a1bSJed Brown   /* Set initial conditions for the adjoint integration */
285*c4762a1bSJed Brown   ierr = VecGetArray(user.lambda[0],&y_ptr);CHKERRQ(ierr);
286*c4762a1bSJed Brown   y_ptr[0] = 1.0; y_ptr[1] = 0.0;
287*c4762a1bSJed Brown   ierr = VecRestoreArray(user.lambda[0],&y_ptr);CHKERRQ(ierr);
288*c4762a1bSJed Brown   ierr = MatCreateVecs(user.A,&user.lambda[1],NULL);CHKERRQ(ierr);
289*c4762a1bSJed Brown   ierr = VecGetArray(user.lambda[1],&y_ptr);CHKERRQ(ierr);
290*c4762a1bSJed Brown   y_ptr[0] = 0.0; y_ptr[1] = 1.0;
291*c4762a1bSJed Brown   ierr = VecRestoreArray(user.lambda[1],&y_ptr);CHKERRQ(ierr);
292*c4762a1bSJed Brown 
293*c4762a1bSJed Brown   ierr = MatCreateVecs(user.Jacp,&user.mup[0],NULL);CHKERRQ(ierr);
294*c4762a1bSJed Brown   ierr = VecGetArray(user.mup[0],&x_ptr);CHKERRQ(ierr);
295*c4762a1bSJed Brown   x_ptr[0] = 0.0;
296*c4762a1bSJed Brown   ierr = VecRestoreArray(user.mup[0],&x_ptr);CHKERRQ(ierr);
297*c4762a1bSJed Brown   ierr = MatCreateVecs(user.Jacp,&user.mup[1],NULL);CHKERRQ(ierr);
298*c4762a1bSJed Brown   ierr = VecGetArray(user.mup[1],&x_ptr);CHKERRQ(ierr);
299*c4762a1bSJed Brown   x_ptr[0] = 0.0;
300*c4762a1bSJed Brown   ierr = VecRestoreArray(user.mup[1],&x_ptr);CHKERRQ(ierr);
301*c4762a1bSJed Brown 
302*c4762a1bSJed Brown   ierr = TSSetCostGradients(ts,2,user.lambda,user.mup);CHKERRQ(ierr);
303*c4762a1bSJed Brown 
304*c4762a1bSJed Brown   ierr = TSAdjointSolve(ts);CHKERRQ(ierr);
305*c4762a1bSJed Brown 
306*c4762a1bSJed Brown   ierr = PetscPrintf(PETSC_COMM_WORLD,"\n sensitivity wrt initial conditions: d[y(tf)]/d[y0]  d[y(tf)]/d[z0]\n");CHKERRQ(ierr);
307*c4762a1bSJed Brown   ierr = VecView(user.lambda[0],PETSC_VIEWER_STDOUT_WORLD);CHKERRQ(ierr);
308*c4762a1bSJed Brown   ierr = PetscPrintf(PETSC_COMM_WORLD,"\n sensitivity wrt initial conditions: d[z(tf)]/d[y0]  d[z(tf)]/d[z0]\n");CHKERRQ(ierr);
309*c4762a1bSJed Brown   ierr = VecView(user.lambda[1],PETSC_VIEWER_STDOUT_WORLD);CHKERRQ(ierr);
310*c4762a1bSJed Brown 
311*c4762a1bSJed Brown   ierr = VecGetArray(user.mup[0],&x_ptr);CHKERRQ(ierr);
312*c4762a1bSJed Brown   ierr = VecGetArray(user.lambda[0],&y_ptr);CHKERRQ(ierr);
313*c4762a1bSJed Brown   derp = y_ptr[1]*(-10.0/(81.0*user.mu*user.mu)+2.0*292.0/(2187.0*user.mu*user.mu*user.mu))+x_ptr[0];
314*c4762a1bSJed Brown   ierr = VecRestoreArray(user.mup[0],&x_ptr);CHKERRQ(ierr);
315*c4762a1bSJed Brown   ierr = VecRestoreArray(user.lambda[0],&y_ptr);CHKERRQ(ierr);
316*c4762a1bSJed Brown   ierr = PetscPrintf(PETSC_COMM_WORLD,"\n sensitivity wrt parameters: d[y(tf)]/d[mu]\n%g\n",(double)PetscRealPart(derp));CHKERRQ(ierr);
317*c4762a1bSJed Brown 
318*c4762a1bSJed Brown   ierr = VecGetArray(user.mup[1],&x_ptr);CHKERRQ(ierr);
319*c4762a1bSJed Brown   ierr = VecGetArray(user.lambda[1],&y_ptr);CHKERRQ(ierr);
320*c4762a1bSJed Brown   derp = y_ptr[1]*(-10.0/(81.0*user.mu*user.mu)+2.0*292.0/(2187.0*user.mu*user.mu*user.mu))+x_ptr[0];
321*c4762a1bSJed Brown   ierr = VecRestoreArray(user.mup[1],&x_ptr);CHKERRQ(ierr);
322*c4762a1bSJed Brown   ierr = VecRestoreArray(user.lambda[1],&y_ptr);CHKERRQ(ierr);
323*c4762a1bSJed Brown   ierr = PetscPrintf(PETSC_COMM_WORLD,"\n sensivitity wrt parameters: d[z(tf)]/d[mu]\n%g\n",(double)PetscRealPart(derp));CHKERRQ(ierr);
324*c4762a1bSJed Brown 
325*c4762a1bSJed Brown   /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
326*c4762a1bSJed Brown      Free work space.  All PETSc objects should be destroyed when they
327*c4762a1bSJed Brown      are no longer needed.
328*c4762a1bSJed Brown    - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */
329*c4762a1bSJed Brown   ierr = MatDestroy(&user.A);CHKERRQ(ierr);
330*c4762a1bSJed Brown   ierr = MatDestroy(&user.Jacp);CHKERRQ(ierr);
331*c4762a1bSJed Brown   ierr = VecDestroy(&user.U);CHKERRQ(ierr);
332*c4762a1bSJed Brown   ierr = VecDestroy(&user.lambda[0]);CHKERRQ(ierr);
333*c4762a1bSJed Brown   ierr = VecDestroy(&user.lambda[1]);CHKERRQ(ierr);
334*c4762a1bSJed Brown   ierr = VecDestroy(&user.mup[0]);CHKERRQ(ierr);
335*c4762a1bSJed Brown   ierr = VecDestroy(&user.mup[1]);CHKERRQ(ierr);
336*c4762a1bSJed Brown   ierr = TSDestroy(&ts);CHKERRQ(ierr);
337*c4762a1bSJed Brown 
338*c4762a1bSJed Brown   ierr = PetscFinalize();
339*c4762a1bSJed Brown   return(ierr);
340*c4762a1bSJed Brown }
341*c4762a1bSJed Brown 
342*c4762a1bSJed Brown /*TEST
343*c4762a1bSJed Brown 
344*c4762a1bSJed Brown     test:
345*c4762a1bSJed Brown       requires: revolve
346*c4762a1bSJed Brown       args: -monitor 0 -ts_type theta -ts_theta_endpoint -ts_theta_theta 0.5 -viewer_binary_skip_info -ts_dt 0.001 -mu 100000
347*c4762a1bSJed Brown 
348*c4762a1bSJed Brown     test:
349*c4762a1bSJed Brown       suffix: 2
350*c4762a1bSJed Brown       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_solution_only
351*c4762a1bSJed Brown 
352*c4762a1bSJed Brown     test:
353*c4762a1bSJed Brown       suffix: 3
354*c4762a1bSJed Brown       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_solution_only 0
355*c4762a1bSJed Brown       output_file: output/ex20adj_2.out
356*c4762a1bSJed Brown 
357*c4762a1bSJed Brown     test:
358*c4762a1bSJed Brown       suffix: 4
359*c4762a1bSJed Brown       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_stride 5 -ts_trajectory_solution_only -ts_trajectory_save_stack
360*c4762a1bSJed Brown       output_file: output/ex20adj_2.out
361*c4762a1bSJed Brown 
362*c4762a1bSJed Brown     test:
363*c4762a1bSJed Brown       suffix: 5
364*c4762a1bSJed Brown       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_stride 5 -ts_trajectory_solution_only 0 -ts_trajectory_save_stack
365*c4762a1bSJed Brown       output_file: output/ex20adj_2.out
366*c4762a1bSJed Brown 
367*c4762a1bSJed Brown     test:
368*c4762a1bSJed Brown       suffix: 6
369*c4762a1bSJed Brown       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_stride 5 -ts_trajectory_solution_only -ts_trajectory_save_stack 0
370*c4762a1bSJed Brown       output_file: output/ex20adj_2.out
371*c4762a1bSJed Brown 
372*c4762a1bSJed Brown     test:
373*c4762a1bSJed Brown       suffix: 7
374*c4762a1bSJed Brown       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_stride 5 -ts_trajectory_solution_only 0 -ts_trajectory_save_stack 0
375*c4762a1bSJed Brown       output_file: output/ex20adj_2.out
376*c4762a1bSJed Brown 
377*c4762a1bSJed Brown     test:
378*c4762a1bSJed Brown       suffix: 8
379*c4762a1bSJed Brown       requires: revolve
380*c4762a1bSJed Brown       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 5 -ts_trajectory_solution_only -ts_trajectory_monitor
381*c4762a1bSJed Brown       output_file: output/ex20adj_3.out
382*c4762a1bSJed Brown 
383*c4762a1bSJed Brown     test:
384*c4762a1bSJed Brown       suffix: 9
385*c4762a1bSJed Brown       requires: revolve
386*c4762a1bSJed Brown       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 5 -ts_trajectory_solution_only 0 -ts_trajectory_monitor
387*c4762a1bSJed Brown       output_file: output/ex20adj_4.out
388*c4762a1bSJed Brown 
389*c4762a1bSJed Brown     test:
390*c4762a1bSJed Brown       requires: revolve
391*c4762a1bSJed Brown       suffix: 10
392*c4762a1bSJed Brown       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 5 -ts_trajectory_revolve_online -ts_trajectory_solution_only
393*c4762a1bSJed Brown       output_file: output/ex20adj_2.out
394*c4762a1bSJed Brown 
395*c4762a1bSJed Brown     test:
396*c4762a1bSJed Brown       requires: revolve
397*c4762a1bSJed Brown       suffix: 11
398*c4762a1bSJed Brown       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 5 -ts_trajectory_revolve_online -ts_trajectory_solution_only 0
399*c4762a1bSJed Brown       output_file: output/ex20adj_2.out
400*c4762a1bSJed Brown 
401*c4762a1bSJed Brown     test:
402*c4762a1bSJed Brown       suffix: 12
403*c4762a1bSJed Brown       requires: revolve
404*c4762a1bSJed Brown       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_max_cps_disk 8 -ts_trajectory_solution_only
405*c4762a1bSJed Brown       output_file: output/ex20adj_2.out
406*c4762a1bSJed Brown 
407*c4762a1bSJed Brown     test:
408*c4762a1bSJed Brown       suffix: 13
409*c4762a1bSJed Brown       requires: revolve
410*c4762a1bSJed Brown       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_max_cps_disk 8 -ts_trajectory_solution_only 0
411*c4762a1bSJed Brown       output_file: output/ex20adj_2.out
412*c4762a1bSJed Brown 
413*c4762a1bSJed Brown     test:
414*c4762a1bSJed Brown       suffix: 14
415*c4762a1bSJed Brown       requires: revolve
416*c4762a1bSJed Brown       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_stride 5 -ts_trajectory_solution_only -ts_trajectory_save_stack
417*c4762a1bSJed Brown       output_file: output/ex20adj_2.out
418*c4762a1bSJed Brown 
419*c4762a1bSJed Brown     test:
420*c4762a1bSJed Brown       suffix: 15
421*c4762a1bSJed Brown       requires: revolve
422*c4762a1bSJed Brown       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_stride 5 -ts_trajectory_solution_only -ts_trajectory_save_stack 0
423*c4762a1bSJed Brown       output_file: output/ex20adj_2.out
424*c4762a1bSJed Brown 
425*c4762a1bSJed Brown     test:
426*c4762a1bSJed Brown       suffix: 16
427*c4762a1bSJed Brown       requires: revolve
428*c4762a1bSJed Brown       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_stride 5 -ts_trajectory_solution_only 0 -ts_trajectory_save_stack
429*c4762a1bSJed Brown       output_file: output/ex20adj_2.out
430*c4762a1bSJed Brown 
431*c4762a1bSJed Brown     test:
432*c4762a1bSJed Brown       suffix: 17
433*c4762a1bSJed Brown       requires: revolve
434*c4762a1bSJed Brown       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_stride 5 -ts_trajectory_solution_only 0 -ts_trajectory_save_stack 0
435*c4762a1bSJed Brown       output_file: output/ex20adj_2.out
436*c4762a1bSJed Brown 
437*c4762a1bSJed Brown     test:
438*c4762a1bSJed Brown       suffix: 18
439*c4762a1bSJed Brown       requires: revolve
440*c4762a1bSJed Brown       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_max_cps_disk 8 -ts_trajectory_stride 5 -ts_trajectory_solution_only -ts_trajectory_save_stack
441*c4762a1bSJed Brown       output_file: output/ex20adj_2.out
442*c4762a1bSJed Brown 
443*c4762a1bSJed Brown     test:
444*c4762a1bSJed Brown       suffix: 19
445*c4762a1bSJed Brown       requires: revolve
446*c4762a1bSJed Brown       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_max_cps_disk 8 -ts_trajectory_stride 5 -ts_trajectory_solution_only 0 -ts_trajectory_save_stack
447*c4762a1bSJed Brown       output_file: output/ex20adj_2.out
448*c4762a1bSJed Brown 
449*c4762a1bSJed Brown     test:
450*c4762a1bSJed Brown       suffix: 20
451*c4762a1bSJed Brown       requires: revolve
452*c4762a1bSJed Brown       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_max_cps_disk 8 -ts_trajectory_solution_only 0
453*c4762a1bSJed Brown       output_file: output/ex20adj_2.out
454*c4762a1bSJed Brown 
455*c4762a1bSJed Brown     test:
456*c4762a1bSJed Brown       suffix: 21
457*c4762a1bSJed Brown       requires: revolve
458*c4762a1bSJed Brown       args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_max_cps_disk 8 -ts_trajectory_stride 5 -ts_trajectory_solution_only 0 -ts_trajectory_save_stack 0
459*c4762a1bSJed Brown       output_file: output/ex20adj_2.out
460*c4762a1bSJed Brown 
461*c4762a1bSJed Brown     test:
462*c4762a1bSJed Brown       suffix: 22
463*c4762a1bSJed Brown       args: -ts_type beuler -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_solution_only
464*c4762a1bSJed Brown       output_file: output/ex20adj_2.out
465*c4762a1bSJed Brown TEST*/
466