1c4762a1bSJed Brown static char help[] = "Performs adjoint sensitivity analysis for the van der Pol equation.\n"; 2c4762a1bSJed Brown 3c4762a1bSJed Brown /* ------------------------------------------------------------------------ 4c4762a1bSJed Brown 5c4762a1bSJed Brown This program solves the van der Pol DAE ODE equivalent 6c4762a1bSJed Brown [ u_1' ] = [ u_2 ] (2) 7c4762a1bSJed Brown [ u_2' ] [ \mu ((1 - u_1^2) u_2 - u_1) ] 8c4762a1bSJed Brown on the domain 0 <= x <= 1, with the boundary conditions 9c4762a1bSJed Brown u_1(0) = 2, u_2(0) = - 2/3 +10/(81*\mu) - 292/(2187*\mu^2), 10c4762a1bSJed Brown and 11c4762a1bSJed Brown \mu = 10^6 ( y'(0) ~ -0.6666665432100101)., 12c4762a1bSJed Brown and computes the sensitivities of the final solution w.r.t. initial conditions and parameter \mu with the implicit theta method and its discrete adjoint. 13c4762a1bSJed Brown 14c4762a1bSJed Brown Notes: 15c4762a1bSJed Brown This code demonstrates the TSAdjoint interface to a DAE system. 16c4762a1bSJed Brown 17c4762a1bSJed Brown The user provides the implicit right-hand-side function 185ab1ac2bSHong Zhang [ F(u',u,t) ] = [u' - f(u,t)] = [ u_1'] - [ u_2 ] 19c4762a1bSJed Brown [ u_2'] [ \mu ((1-u_1^2)u_2-u_1) ] 20c4762a1bSJed Brown 215ab1ac2bSHong Zhang and the Jacobian of F (from the PETSc user manual) 22c4762a1bSJed Brown 235ab1ac2bSHong Zhang dF dF 245ab1ac2bSHong Zhang J(F) = a * -- + -- 25c4762a1bSJed Brown du' du 26c4762a1bSJed Brown 275ab1ac2bSHong Zhang and the JacobianP of the explicit right-hand side of (2) f(u,t) ( which is equivalent to -F(0,u,t)). 28c4762a1bSJed Brown df [ 0 ] 29c4762a1bSJed Brown -- = [ ] 30c4762a1bSJed Brown dp [ (1 - u_1^2) u_2 - u_1 ]. 31c4762a1bSJed Brown 32c4762a1bSJed Brown See ex20.c for more details on the Jacobian. 33c4762a1bSJed Brown 34c4762a1bSJed Brown ------------------------------------------------------------------------- */ 35c4762a1bSJed Brown #include <petscts.h> 36c4762a1bSJed Brown #include <petsctao.h> 37c4762a1bSJed Brown 38c4762a1bSJed Brown typedef struct _n_User *User; 39c4762a1bSJed Brown struct _n_User { 40c4762a1bSJed Brown PetscReal mu; 41c4762a1bSJed Brown PetscReal next_output; 42c4762a1bSJed Brown 43c4762a1bSJed Brown /* Sensitivity analysis support */ 44c4762a1bSJed Brown PetscInt steps; 45c4762a1bSJed Brown PetscReal ftime; 46c4762a1bSJed Brown Mat A; /* Jacobian matrix */ 47c4762a1bSJed Brown Mat Jacp; /* JacobianP matrix */ 48c4762a1bSJed Brown Vec U, lambda[2], mup[2]; /* adjoint variables */ 49c4762a1bSJed Brown }; 50c4762a1bSJed Brown 51c4762a1bSJed Brown /* ----------------------- Explicit form of the ODE -------------------- */ 52c4762a1bSJed Brown 53*d71ae5a4SJacob Faibussowitsch static PetscErrorCode RHSFunction(TS ts, PetscReal t, Vec U, Vec F, void *ctx) 54*d71ae5a4SJacob Faibussowitsch { 55c4762a1bSJed Brown User user = (User)ctx; 56c4762a1bSJed Brown PetscScalar *f; 57c4762a1bSJed Brown const PetscScalar *u; 58c4762a1bSJed Brown 59c4762a1bSJed Brown PetscFunctionBeginUser; 609566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(U, &u)); 619566063dSJacob Faibussowitsch PetscCall(VecGetArray(F, &f)); 62c4762a1bSJed Brown f[0] = u[1]; 63c4762a1bSJed Brown f[1] = user->mu * ((1. - u[0] * u[0]) * u[1] - u[0]); 649566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(U, &u)); 659566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(F, &f)); 66c4762a1bSJed Brown PetscFunctionReturn(0); 67c4762a1bSJed Brown } 68c4762a1bSJed Brown 69*d71ae5a4SJacob Faibussowitsch static PetscErrorCode RHSJacobian(TS ts, PetscReal t, Vec U, Mat A, Mat B, void *ctx) 70*d71ae5a4SJacob Faibussowitsch { 71c4762a1bSJed Brown User user = (User)ctx; 72c4762a1bSJed Brown PetscReal mu = user->mu; 73c4762a1bSJed Brown PetscInt rowcol[] = {0, 1}; 74c4762a1bSJed Brown PetscScalar J[2][2]; 75c4762a1bSJed Brown const PetscScalar *u; 76c4762a1bSJed Brown 77c4762a1bSJed Brown PetscFunctionBeginUser; 789566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(U, &u)); 79c4762a1bSJed Brown J[0][0] = 0; 80c4762a1bSJed Brown J[1][0] = -mu * (2.0 * u[1] * u[0] + 1.); 81c4762a1bSJed Brown J[0][1] = 1.0; 82c4762a1bSJed Brown J[1][1] = mu * (1.0 - u[0] * u[0]); 839566063dSJacob Faibussowitsch PetscCall(MatSetValues(A, 2, rowcol, 2, rowcol, &J[0][0], INSERT_VALUES)); 849566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 859566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 86c4762a1bSJed Brown if (A != B) { 879566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 889566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 89c4762a1bSJed Brown } 909566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(U, &u)); 91c4762a1bSJed Brown PetscFunctionReturn(0); 92c4762a1bSJed Brown } 93c4762a1bSJed Brown 94c4762a1bSJed Brown /* ----------------------- Implicit form of the ODE -------------------- */ 95c4762a1bSJed Brown 96*d71ae5a4SJacob Faibussowitsch static PetscErrorCode IFunction(TS ts, PetscReal t, Vec U, Vec Udot, Vec F, void *ctx) 97*d71ae5a4SJacob Faibussowitsch { 98c4762a1bSJed Brown User user = (User)ctx; 99c4762a1bSJed Brown const PetscScalar *u, *udot; 100c4762a1bSJed Brown PetscScalar *f; 101c4762a1bSJed Brown 102c4762a1bSJed Brown PetscFunctionBeginUser; 1039566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(U, &u)); 1049566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(Udot, &udot)); 1059566063dSJacob Faibussowitsch PetscCall(VecGetArray(F, &f)); 106c4762a1bSJed Brown f[0] = udot[0] - u[1]; 107c4762a1bSJed Brown f[1] = udot[1] - user->mu * ((1.0 - u[0] * u[0]) * u[1] - u[0]); 1089566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(U, &u)); 1099566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(Udot, &udot)); 1109566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(F, &f)); 111c4762a1bSJed Brown PetscFunctionReturn(0); 112c4762a1bSJed Brown } 113c4762a1bSJed Brown 114*d71ae5a4SJacob Faibussowitsch static PetscErrorCode IJacobian(TS ts, PetscReal t, Vec U, Vec Udot, PetscReal a, Mat A, Mat B, void *ctx) 115*d71ae5a4SJacob Faibussowitsch { 116c4762a1bSJed Brown User user = (User)ctx; 117c4762a1bSJed Brown PetscInt rowcol[] = {0, 1}; 118c4762a1bSJed Brown PetscScalar J[2][2]; 119c4762a1bSJed Brown const PetscScalar *u; 120c4762a1bSJed Brown 121c4762a1bSJed Brown PetscFunctionBeginUser; 1229566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(U, &u)); 123c4762a1bSJed Brown 1249371c9d4SSatish Balay J[0][0] = a; 1259371c9d4SSatish Balay J[0][1] = -1.0; 1269371c9d4SSatish Balay J[1][0] = user->mu * (2.0 * u[0] * u[1] + 1.0); 1279371c9d4SSatish Balay J[1][1] = a - user->mu * (1.0 - u[0] * u[0]); 128c4762a1bSJed Brown 1299566063dSJacob Faibussowitsch PetscCall(MatSetValues(B, 2, rowcol, 2, rowcol, &J[0][0], INSERT_VALUES)); 1309566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(U, &u)); 131c4762a1bSJed Brown 1329566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 1339566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 134c4762a1bSJed Brown if (B && A != B) { 1359566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 1369566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 137c4762a1bSJed Brown } 138c4762a1bSJed Brown PetscFunctionReturn(0); 139c4762a1bSJed Brown } 140c4762a1bSJed Brown 141*d71ae5a4SJacob Faibussowitsch static PetscErrorCode RHSJacobianP(TS ts, PetscReal t, Vec U, Mat A, void *ctx) 142*d71ae5a4SJacob Faibussowitsch { 143c4762a1bSJed Brown PetscInt row[] = {0, 1}, col[] = {0}; 144c4762a1bSJed Brown PetscScalar J[2][1]; 145c4762a1bSJed Brown const PetscScalar *u; 146c4762a1bSJed Brown 147c4762a1bSJed Brown PetscFunctionBeginUser; 1489566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(U, &u)); 149c4762a1bSJed Brown J[0][0] = 0; 150c4762a1bSJed Brown J[1][0] = (1. - u[0] * u[0]) * u[1] - u[0]; 1519566063dSJacob Faibussowitsch PetscCall(MatSetValues(A, 2, row, 1, col, &J[0][0], INSERT_VALUES)); 1529566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(A, MAT_FINAL_ASSEMBLY)); 1539566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(A, MAT_FINAL_ASSEMBLY)); 1549566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(U, &u)); 155c4762a1bSJed Brown PetscFunctionReturn(0); 156c4762a1bSJed Brown } 157c4762a1bSJed Brown 158c4762a1bSJed Brown /* Monitor timesteps and use interpolation to output at integer multiples of 0.1 */ 159*d71ae5a4SJacob Faibussowitsch static PetscErrorCode Monitor(TS ts, PetscInt step, PetscReal t, Vec U, void *ctx) 160*d71ae5a4SJacob Faibussowitsch { 161c4762a1bSJed Brown const PetscScalar *u; 162c4762a1bSJed Brown PetscReal tfinal, dt; 163c4762a1bSJed Brown User user = (User)ctx; 164c4762a1bSJed Brown Vec interpolatedU; 165c4762a1bSJed Brown 166c4762a1bSJed Brown PetscFunctionBeginUser; 1679566063dSJacob Faibussowitsch PetscCall(TSGetTimeStep(ts, &dt)); 1689566063dSJacob Faibussowitsch PetscCall(TSGetMaxTime(ts, &tfinal)); 169c4762a1bSJed Brown 170c4762a1bSJed Brown while (user->next_output <= t && user->next_output <= tfinal) { 1719566063dSJacob Faibussowitsch PetscCall(VecDuplicate(U, &interpolatedU)); 1729566063dSJacob Faibussowitsch PetscCall(TSInterpolate(ts, user->next_output, interpolatedU)); 1739566063dSJacob Faibussowitsch PetscCall(VecGetArrayRead(interpolatedU, &u)); 1749371c9d4SSatish Balay PetscCall(PetscPrintf(PETSC_COMM_WORLD, "[%g] %" PetscInt_FMT " TS %g (dt = %g) X %g %g\n", (double)user->next_output, step, (double)t, (double)dt, (double)PetscRealPart(u[0]), (double)PetscRealPart(u[1]))); 1759566063dSJacob Faibussowitsch PetscCall(VecRestoreArrayRead(interpolatedU, &u)); 1769566063dSJacob Faibussowitsch PetscCall(VecDestroy(&interpolatedU)); 177c4762a1bSJed Brown user->next_output += 0.1; 178c4762a1bSJed Brown } 179c4762a1bSJed Brown PetscFunctionReturn(0); 180c4762a1bSJed Brown } 181c4762a1bSJed Brown 182*d71ae5a4SJacob Faibussowitsch int main(int argc, char **argv) 183*d71ae5a4SJacob Faibussowitsch { 184c4762a1bSJed Brown TS ts; 185c4762a1bSJed Brown PetscBool monitor = PETSC_FALSE, implicitform = PETSC_TRUE; 186c4762a1bSJed Brown PetscScalar *x_ptr, *y_ptr, derp; 187c4762a1bSJed Brown PetscMPIInt size; 188c4762a1bSJed Brown struct _n_User user; 189c4762a1bSJed Brown 190c4762a1bSJed Brown /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 191c4762a1bSJed Brown Initialize program 192c4762a1bSJed Brown - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */ 193327415f7SBarry Smith PetscFunctionBeginUser; 1949566063dSJacob Faibussowitsch PetscCall(PetscInitialize(&argc, &argv, NULL, help)); 1959566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PETSC_COMM_WORLD, &size)); 1963c633725SBarry Smith PetscCheck(size == 1, PETSC_COMM_WORLD, PETSC_ERR_WRONG_MPI_SIZE, "This is a uniprocessor example only!"); 197c4762a1bSJed Brown 198c4762a1bSJed Brown /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 199c4762a1bSJed Brown Set runtime options 200c4762a1bSJed Brown - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */ 201c4762a1bSJed Brown user.next_output = 0.0; 202c4762a1bSJed Brown user.mu = 1.0e3; 203c4762a1bSJed Brown user.steps = 0; 204c4762a1bSJed Brown user.ftime = 0.5; 2059566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetBool(NULL, NULL, "-monitor", &monitor, NULL)); 2069566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetReal(NULL, NULL, "-mu", &user.mu, NULL)); 2079566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetBool(NULL, NULL, "-implicitform", &implicitform, NULL)); 208c4762a1bSJed Brown 209c4762a1bSJed Brown /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 210c4762a1bSJed Brown Create necessary matrix and vectors, solve same ODE on every process 211c4762a1bSJed Brown - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */ 2129566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_WORLD, &user.A)); 2139566063dSJacob Faibussowitsch PetscCall(MatSetSizes(user.A, PETSC_DECIDE, PETSC_DECIDE, 2, 2)); 2149566063dSJacob Faibussowitsch PetscCall(MatSetFromOptions(user.A)); 2159566063dSJacob Faibussowitsch PetscCall(MatSetUp(user.A)); 2169566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(user.A, &user.U, NULL)); 217c4762a1bSJed Brown 2189566063dSJacob Faibussowitsch PetscCall(MatCreate(PETSC_COMM_WORLD, &user.Jacp)); 2199566063dSJacob Faibussowitsch PetscCall(MatSetSizes(user.Jacp, PETSC_DECIDE, PETSC_DECIDE, 2, 1)); 2209566063dSJacob Faibussowitsch PetscCall(MatSetFromOptions(user.Jacp)); 2219566063dSJacob Faibussowitsch PetscCall(MatSetUp(user.Jacp)); 222c4762a1bSJed Brown 223c4762a1bSJed Brown /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 224c4762a1bSJed Brown Create timestepping solver context 225c4762a1bSJed Brown - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */ 2269566063dSJacob Faibussowitsch PetscCall(TSCreate(PETSC_COMM_WORLD, &ts)); 2279566063dSJacob Faibussowitsch PetscCall(TSSetEquationType(ts, TS_EQ_ODE_EXPLICIT)); /* less Jacobian evaluations when adjoint BEuler is used, otherwise no effect */ 228c4762a1bSJed Brown if (implicitform) { 2299566063dSJacob Faibussowitsch PetscCall(TSSetIFunction(ts, NULL, IFunction, &user)); 2309566063dSJacob Faibussowitsch PetscCall(TSSetIJacobian(ts, user.A, user.A, IJacobian, &user)); 2319566063dSJacob Faibussowitsch PetscCall(TSSetType(ts, TSCN)); 232c4762a1bSJed Brown } else { 2339566063dSJacob Faibussowitsch PetscCall(TSSetRHSFunction(ts, NULL, RHSFunction, &user)); 2349566063dSJacob Faibussowitsch PetscCall(TSSetRHSJacobian(ts, user.A, user.A, RHSJacobian, &user)); 2359566063dSJacob Faibussowitsch PetscCall(TSSetType(ts, TSRK)); 236c4762a1bSJed Brown } 2379566063dSJacob Faibussowitsch PetscCall(TSSetRHSJacobianP(ts, user.Jacp, RHSJacobianP, &user)); 2389566063dSJacob Faibussowitsch PetscCall(TSSetMaxTime(ts, user.ftime)); 2399566063dSJacob Faibussowitsch PetscCall(TSSetTimeStep(ts, 0.001)); 2409566063dSJacob Faibussowitsch PetscCall(TSSetExactFinalTime(ts, TS_EXACTFINALTIME_MATCHSTEP)); 2419566063dSJacob Faibussowitsch if (monitor) PetscCall(TSMonitorSet(ts, Monitor, &user, NULL)); 242c4762a1bSJed Brown 243c4762a1bSJed Brown /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 244c4762a1bSJed Brown Set initial conditions 245c4762a1bSJed Brown - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */ 2469566063dSJacob Faibussowitsch PetscCall(VecGetArray(user.U, &x_ptr)); 247c4762a1bSJed Brown x_ptr[0] = 2.0; 248c4762a1bSJed Brown x_ptr[1] = -2.0 / 3.0 + 10.0 / (81.0 * user.mu) - 292.0 / (2187.0 * user.mu * user.mu); 2499566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(user.U, &x_ptr)); 2509566063dSJacob Faibussowitsch PetscCall(TSSetTimeStep(ts, 0.001)); 251c4762a1bSJed Brown 252c4762a1bSJed Brown /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 253c4762a1bSJed Brown Save trajectory of solution so that TSAdjointSolve() may be used 254c4762a1bSJed Brown - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */ 2559566063dSJacob Faibussowitsch PetscCall(TSSetSaveTrajectory(ts)); 256c4762a1bSJed Brown 257c4762a1bSJed Brown /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 258c4762a1bSJed Brown Set runtime options 259c4762a1bSJed Brown - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */ 2609566063dSJacob Faibussowitsch PetscCall(TSSetFromOptions(ts)); 261c4762a1bSJed Brown 2629566063dSJacob Faibussowitsch PetscCall(TSSolve(ts, user.U)); 2639566063dSJacob Faibussowitsch PetscCall(TSGetSolveTime(ts, &user.ftime)); 2649566063dSJacob Faibussowitsch PetscCall(TSGetStepNumber(ts, &user.steps)); 265c4762a1bSJed Brown 266c4762a1bSJed Brown /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 267c4762a1bSJed Brown Adjoint model starts here 268c4762a1bSJed Brown - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */ 2699566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(user.A, &user.lambda[0], NULL)); 270c4762a1bSJed Brown /* Set initial conditions for the adjoint integration */ 2719566063dSJacob Faibussowitsch PetscCall(VecGetArray(user.lambda[0], &y_ptr)); 2729371c9d4SSatish Balay y_ptr[0] = 1.0; 2739371c9d4SSatish Balay y_ptr[1] = 0.0; 2749566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(user.lambda[0], &y_ptr)); 2759566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(user.A, &user.lambda[1], NULL)); 2769566063dSJacob Faibussowitsch PetscCall(VecGetArray(user.lambda[1], &y_ptr)); 2779371c9d4SSatish Balay y_ptr[0] = 0.0; 2789371c9d4SSatish Balay y_ptr[1] = 1.0; 2799566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(user.lambda[1], &y_ptr)); 280c4762a1bSJed Brown 2819566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(user.Jacp, &user.mup[0], NULL)); 2829566063dSJacob Faibussowitsch PetscCall(VecGetArray(user.mup[0], &x_ptr)); 283c4762a1bSJed Brown x_ptr[0] = 0.0; 2849566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(user.mup[0], &x_ptr)); 2859566063dSJacob Faibussowitsch PetscCall(MatCreateVecs(user.Jacp, &user.mup[1], NULL)); 2869566063dSJacob Faibussowitsch PetscCall(VecGetArray(user.mup[1], &x_ptr)); 287c4762a1bSJed Brown x_ptr[0] = 0.0; 2889566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(user.mup[1], &x_ptr)); 289c4762a1bSJed Brown 2909566063dSJacob Faibussowitsch PetscCall(TSSetCostGradients(ts, 2, user.lambda, user.mup)); 291c4762a1bSJed Brown 2929566063dSJacob Faibussowitsch PetscCall(TSAdjointSolve(ts)); 293c4762a1bSJed Brown 2949566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_WORLD, "\n sensitivity wrt initial conditions: d[y(tf)]/d[y0] d[y(tf)]/d[z0]\n")); 2959566063dSJacob Faibussowitsch PetscCall(VecView(user.lambda[0], PETSC_VIEWER_STDOUT_WORLD)); 2969566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_WORLD, "\n sensitivity wrt initial conditions: d[z(tf)]/d[y0] d[z(tf)]/d[z0]\n")); 2979566063dSJacob Faibussowitsch PetscCall(VecView(user.lambda[1], PETSC_VIEWER_STDOUT_WORLD)); 298c4762a1bSJed Brown 2999566063dSJacob Faibussowitsch PetscCall(VecGetArray(user.mup[0], &x_ptr)); 3009566063dSJacob Faibussowitsch PetscCall(VecGetArray(user.lambda[0], &y_ptr)); 301c4762a1bSJed Brown derp = y_ptr[1] * (-10.0 / (81.0 * user.mu * user.mu) + 2.0 * 292.0 / (2187.0 * user.mu * user.mu * user.mu)) + x_ptr[0]; 3029566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(user.mup[0], &x_ptr)); 3039566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(user.lambda[0], &y_ptr)); 3049566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_WORLD, "\n sensitivity wrt parameters: d[y(tf)]/d[mu]\n%g\n", (double)PetscRealPart(derp))); 305c4762a1bSJed Brown 3069566063dSJacob Faibussowitsch PetscCall(VecGetArray(user.mup[1], &x_ptr)); 3079566063dSJacob Faibussowitsch PetscCall(VecGetArray(user.lambda[1], &y_ptr)); 308c4762a1bSJed Brown derp = y_ptr[1] * (-10.0 / (81.0 * user.mu * user.mu) + 2.0 * 292.0 / (2187.0 * user.mu * user.mu * user.mu)) + x_ptr[0]; 3099566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(user.mup[1], &x_ptr)); 3109566063dSJacob Faibussowitsch PetscCall(VecRestoreArray(user.lambda[1], &y_ptr)); 3119566063dSJacob Faibussowitsch PetscCall(PetscPrintf(PETSC_COMM_WORLD, "\n sensivitity wrt parameters: d[z(tf)]/d[mu]\n%g\n", (double)PetscRealPart(derp))); 312c4762a1bSJed Brown 313c4762a1bSJed Brown /* - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 314c4762a1bSJed Brown Free work space. All PETSc objects should be destroyed when they 315c4762a1bSJed Brown are no longer needed. 316c4762a1bSJed Brown - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - */ 3179566063dSJacob Faibussowitsch PetscCall(MatDestroy(&user.A)); 3189566063dSJacob Faibussowitsch PetscCall(MatDestroy(&user.Jacp)); 3199566063dSJacob Faibussowitsch PetscCall(VecDestroy(&user.U)); 3209566063dSJacob Faibussowitsch PetscCall(VecDestroy(&user.lambda[0])); 3219566063dSJacob Faibussowitsch PetscCall(VecDestroy(&user.lambda[1])); 3229566063dSJacob Faibussowitsch PetscCall(VecDestroy(&user.mup[0])); 3239566063dSJacob Faibussowitsch PetscCall(VecDestroy(&user.mup[1])); 3249566063dSJacob Faibussowitsch PetscCall(TSDestroy(&ts)); 325c4762a1bSJed Brown 3269566063dSJacob Faibussowitsch PetscCall(PetscFinalize()); 327b122ec5aSJacob Faibussowitsch return 0; 328c4762a1bSJed Brown } 329c4762a1bSJed Brown 330c4762a1bSJed Brown /*TEST 331c4762a1bSJed Brown 332c4762a1bSJed Brown test: 333c4762a1bSJed Brown requires: revolve 334c4762a1bSJed Brown args: -monitor 0 -ts_type theta -ts_theta_endpoint -ts_theta_theta 0.5 -viewer_binary_skip_info -ts_dt 0.001 -mu 100000 335c4762a1bSJed Brown 336c4762a1bSJed Brown test: 337c4762a1bSJed Brown suffix: 2 338c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_solution_only 339c4762a1bSJed Brown 340c4762a1bSJed Brown test: 341c4762a1bSJed Brown suffix: 3 342c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_solution_only 0 343c4762a1bSJed Brown output_file: output/ex20adj_2.out 344c4762a1bSJed Brown 345c4762a1bSJed Brown test: 346c4762a1bSJed Brown suffix: 4 347c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_stride 5 -ts_trajectory_solution_only -ts_trajectory_save_stack 348c4762a1bSJed Brown output_file: output/ex20adj_2.out 349c4762a1bSJed Brown 350c4762a1bSJed Brown test: 351c4762a1bSJed Brown suffix: 5 352c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_stride 5 -ts_trajectory_solution_only 0 -ts_trajectory_save_stack 353c4762a1bSJed Brown output_file: output/ex20adj_2.out 354c4762a1bSJed Brown 355c4762a1bSJed Brown test: 356c4762a1bSJed Brown suffix: 6 357c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_stride 5 -ts_trajectory_solution_only -ts_trajectory_save_stack 0 358c4762a1bSJed Brown output_file: output/ex20adj_2.out 359c4762a1bSJed Brown 360c4762a1bSJed Brown test: 361c4762a1bSJed Brown suffix: 7 362c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_stride 5 -ts_trajectory_solution_only 0 -ts_trajectory_save_stack 0 363c4762a1bSJed Brown output_file: output/ex20adj_2.out 364c4762a1bSJed Brown 365c4762a1bSJed Brown test: 366c4762a1bSJed Brown suffix: 8 36760f0b76eSHong Zhang requires: revolve !cams 368c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 5 -ts_trajectory_solution_only -ts_trajectory_monitor 369c4762a1bSJed Brown output_file: output/ex20adj_3.out 370c4762a1bSJed Brown 371c4762a1bSJed Brown test: 372c4762a1bSJed Brown suffix: 9 37360f0b76eSHong Zhang requires: revolve !cams 374c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 5 -ts_trajectory_solution_only 0 -ts_trajectory_monitor 375c4762a1bSJed Brown output_file: output/ex20adj_4.out 376c4762a1bSJed Brown 377c4762a1bSJed Brown test: 378c4762a1bSJed Brown requires: revolve 379c4762a1bSJed Brown suffix: 10 380c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 5 -ts_trajectory_revolve_online -ts_trajectory_solution_only 381c4762a1bSJed Brown output_file: output/ex20adj_2.out 382c4762a1bSJed Brown 383c4762a1bSJed Brown test: 384c4762a1bSJed Brown requires: revolve 385c4762a1bSJed Brown suffix: 11 386c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 5 -ts_trajectory_revolve_online -ts_trajectory_solution_only 0 387c4762a1bSJed Brown output_file: output/ex20adj_2.out 388c4762a1bSJed Brown 389c4762a1bSJed Brown test: 390c4762a1bSJed Brown suffix: 12 391c4762a1bSJed Brown requires: revolve 392c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_max_cps_disk 8 -ts_trajectory_solution_only 393c4762a1bSJed Brown output_file: output/ex20adj_2.out 394c4762a1bSJed Brown 395c4762a1bSJed Brown test: 396c4762a1bSJed Brown suffix: 13 397c4762a1bSJed Brown requires: revolve 398c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_max_cps_disk 8 -ts_trajectory_solution_only 0 399c4762a1bSJed Brown output_file: output/ex20adj_2.out 400c4762a1bSJed Brown 401c4762a1bSJed Brown test: 402c4762a1bSJed Brown suffix: 14 403c4762a1bSJed Brown requires: revolve 404c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_stride 5 -ts_trajectory_solution_only -ts_trajectory_save_stack 405c4762a1bSJed Brown output_file: output/ex20adj_2.out 406c4762a1bSJed Brown 407c4762a1bSJed Brown test: 408c4762a1bSJed Brown suffix: 15 409c4762a1bSJed Brown requires: revolve 410c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_stride 5 -ts_trajectory_solution_only -ts_trajectory_save_stack 0 411c4762a1bSJed Brown output_file: output/ex20adj_2.out 412c4762a1bSJed Brown 413c4762a1bSJed Brown test: 414c4762a1bSJed Brown suffix: 16 415c4762a1bSJed Brown requires: revolve 416c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_stride 5 -ts_trajectory_solution_only 0 -ts_trajectory_save_stack 417c4762a1bSJed Brown output_file: output/ex20adj_2.out 418c4762a1bSJed Brown 419c4762a1bSJed Brown test: 420c4762a1bSJed Brown suffix: 17 421c4762a1bSJed Brown requires: revolve 422c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_stride 5 -ts_trajectory_solution_only 0 -ts_trajectory_save_stack 0 423c4762a1bSJed Brown output_file: output/ex20adj_2.out 424c4762a1bSJed Brown 425c4762a1bSJed Brown test: 426c4762a1bSJed Brown suffix: 18 427c4762a1bSJed Brown requires: revolve 428c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_max_cps_disk 8 -ts_trajectory_stride 5 -ts_trajectory_solution_only -ts_trajectory_save_stack 429c4762a1bSJed Brown output_file: output/ex20adj_2.out 430c4762a1bSJed Brown 431c4762a1bSJed Brown test: 432c4762a1bSJed Brown suffix: 19 433c4762a1bSJed Brown requires: revolve 434c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_max_cps_disk 8 -ts_trajectory_stride 5 -ts_trajectory_solution_only 0 -ts_trajectory_save_stack 435c4762a1bSJed Brown output_file: output/ex20adj_2.out 436c4762a1bSJed Brown 437c4762a1bSJed Brown test: 438c4762a1bSJed Brown suffix: 20 439c4762a1bSJed Brown requires: revolve 440c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_max_cps_disk 8 -ts_trajectory_solution_only 0 441c4762a1bSJed Brown output_file: output/ex20adj_2.out 442c4762a1bSJed Brown 443c4762a1bSJed Brown test: 444c4762a1bSJed Brown suffix: 21 445c4762a1bSJed Brown requires: revolve 446c4762a1bSJed Brown args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_cps_ram 3 -ts_trajectory_max_cps_disk 8 -ts_trajectory_stride 5 -ts_trajectory_solution_only 0 -ts_trajectory_save_stack 0 447c4762a1bSJed Brown output_file: output/ex20adj_2.out 448c4762a1bSJed Brown 449c4762a1bSJed Brown test: 450c4762a1bSJed Brown suffix: 22 451c4762a1bSJed Brown args: -ts_type beuler -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_solution_only 452c4762a1bSJed Brown output_file: output/ex20adj_2.out 453cc4f23bcSHong Zhang 454cc4f23bcSHong Zhang test: 455cc4f23bcSHong Zhang suffix: 23 456cc4f23bcSHong Zhang requires: cams 457533251d3SHong Zhang args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_units_ram 5 -ts_trajectory_solution_only -ts_trajectory_monitor -ts_trajectory_memory_type cams 45860f0b76eSHong Zhang output_file: output/ex20adj_5.out 459cc4f23bcSHong Zhang 460cc4f23bcSHong Zhang test: 461cc4f23bcSHong Zhang suffix: 24 462cc4f23bcSHong Zhang requires: cams 463533251d3SHong Zhang args: -ts_type cn -ts_dt 0.001 -mu 100000 -ts_max_steps 15 -ts_trajectory_type memory -ts_trajectory_max_units_ram 5 -ts_trajectory_solution_only 0 -ts_trajectory_monitor -ts_trajectory_memory_type cams 46460f0b76eSHong Zhang output_file: output/ex20adj_6.out 465cc4f23bcSHong Zhang 466c4762a1bSJed Brown TEST*/ 467