xref: /petsc/src/ts/tutorials/multirate/ex6.c (revision 327415f76d85372a4417cf1aaa14db707d4d6c04)
1c4762a1bSJed Brown /*
2c4762a1bSJed Brown   Note:
36aad120cSJose E. Roman     -hratio is the ratio between mesh size of coarse grids and fine grids
4c4762a1bSJed Brown     -ts_rk_dtratio is the ratio between the large stepsize and the small stepsize
5c4762a1bSJed Brown */
6c4762a1bSJed Brown 
7c4762a1bSJed Brown static const char help[] = "1D periodic Finite Volume solver in slope-limiter form with semidiscrete time stepping.\n"
8c4762a1bSJed Brown   "  advection   - Constant coefficient scalar advection\n"
9c4762a1bSJed Brown   "                u_t       + (a*u)_x               = 0\n"
10c4762a1bSJed Brown   "  for this toy problem, we choose different meshsizes for different sub-domains (slow-fast-slow), say\n"
11c4762a1bSJed Brown   "                hxs  = hratio*hxf \n"
12c4762a1bSJed Brown   "  where hxs and hxf are the grid spacings for coarse and fine grids respectively.\n"
13c4762a1bSJed Brown   "  exact       - Exact Riemann solver which usually needs to perform a Newton iteration to connect\n"
14c4762a1bSJed Brown   "                the states across shocks and rarefactions\n"
15c4762a1bSJed Brown   "  simulation  - use reference solution which is generated by smaller time step size to be true solution,\n"
16c4762a1bSJed Brown   "                also the reference solution should be generated by user and stored in a binary file.\n"
17c4762a1bSJed Brown   "  characteristic - Limit the characteristic variables, this is usually preferred (default)\n"
18c4762a1bSJed Brown   "Several initial conditions can be chosen with -initial N\n\n"
19c4762a1bSJed Brown   "The problem size should be set with -da_grid_x M\n\n";
20c4762a1bSJed Brown 
21c4762a1bSJed Brown #include <petscts.h>
22c4762a1bSJed Brown #include <petscdm.h>
23c4762a1bSJed Brown #include <petscdmda.h>
24c4762a1bSJed Brown #include <petscdraw.h>
25c4762a1bSJed Brown #include "finitevolume1d.h"
26c4762a1bSJed Brown 
279fbee547SJacob Faibussowitsch static inline PetscReal RangeMod(PetscReal a,PetscReal xmin,PetscReal xmax) { PetscReal range = xmax-xmin; return xmin +PetscFmodReal(range+PetscFmodReal(a,range),range); }
28c4762a1bSJed Brown 
29c4762a1bSJed Brown /* --------------------------------- Advection ----------------------------------- */
30c4762a1bSJed Brown typedef struct {
31c4762a1bSJed Brown   PetscReal a;                  /* advective velocity */
32c4762a1bSJed Brown } AdvectCtx;
33c4762a1bSJed Brown 
34c4762a1bSJed Brown static PetscErrorCode PhysicsRiemann_Advect(void *vctx,PetscInt m,const PetscScalar *uL,const PetscScalar *uR,PetscScalar *flux,PetscReal *maxspeed)
35c4762a1bSJed Brown {
36c4762a1bSJed Brown   AdvectCtx *ctx = (AdvectCtx*)vctx;
37c4762a1bSJed Brown   PetscReal speed;
38c4762a1bSJed Brown 
39c4762a1bSJed Brown   PetscFunctionBeginUser;
40c4762a1bSJed Brown   speed     = ctx->a;
41c4762a1bSJed Brown   flux[0]   = PetscMax(0,speed)*uL[0] + PetscMin(0,speed)*uR[0];
42c4762a1bSJed Brown   *maxspeed = speed;
43c4762a1bSJed Brown   PetscFunctionReturn(0);
44c4762a1bSJed Brown }
45c4762a1bSJed Brown 
46c4762a1bSJed Brown static PetscErrorCode PhysicsCharacteristic_Advect(void *vctx,PetscInt m,const PetscScalar *u,PetscScalar *X,PetscScalar *Xi,PetscReal *speeds)
47c4762a1bSJed Brown {
48c4762a1bSJed Brown   AdvectCtx *ctx = (AdvectCtx*)vctx;
49c4762a1bSJed Brown 
50c4762a1bSJed Brown   PetscFunctionBeginUser;
51c4762a1bSJed Brown   X[0]      = 1.;
52c4762a1bSJed Brown   Xi[0]     = 1.;
53c4762a1bSJed Brown   speeds[0] = ctx->a;
54c4762a1bSJed Brown   PetscFunctionReturn(0);
55c4762a1bSJed Brown }
56c4762a1bSJed Brown 
57c4762a1bSJed Brown static PetscErrorCode PhysicsSample_Advect(void *vctx,PetscInt initial,FVBCType bctype,PetscReal xmin,PetscReal xmax,PetscReal t,PetscReal x,PetscReal *u)
58c4762a1bSJed Brown {
59c4762a1bSJed Brown   AdvectCtx *ctx = (AdvectCtx*)vctx;
60c4762a1bSJed Brown   PetscReal a    = ctx->a,x0;
61c4762a1bSJed Brown 
62c4762a1bSJed Brown   PetscFunctionBeginUser;
63c4762a1bSJed Brown   switch (bctype) {
64c4762a1bSJed Brown     case FVBC_OUTFLOW:   x0 = x-a*t; break;
65c4762a1bSJed Brown     case FVBC_PERIODIC: x0 = RangeMod(x-a*t,xmin,xmax); break;
66c4762a1bSJed Brown     default: SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_UNKNOWN_TYPE,"unknown BCType");
67c4762a1bSJed Brown   }
68c4762a1bSJed Brown   switch (initial) {
69c4762a1bSJed Brown     case 0: u[0] = (x0 < 0) ? 1 : -1; break;
70c4762a1bSJed Brown     case 1: u[0] = (x0 < 0) ? -1 : 1; break;
71c4762a1bSJed Brown     case 2: u[0] = (0 < x0 && x0 < 1) ? 1 : 0; break;
72c4762a1bSJed Brown     case 3: u[0] = PetscSinReal(2*PETSC_PI*x0); break;
73c4762a1bSJed Brown     case 4: u[0] = PetscAbs(x0); break;
74c4762a1bSJed Brown     case 5: u[0] = (x0 < 0 || x0 > 0.5) ? 0 : PetscSqr(PetscSinReal(2*PETSC_PI*x0)); break;
75c4762a1bSJed Brown     case 6: u[0] = (x0 < 0) ? 0 : ((x0 < 1) ? x0 : ((x0 < 2) ? 2-x0 : 0)); break;
76c4762a1bSJed Brown     case 7: u[0] = PetscPowReal(PetscSinReal(PETSC_PI*x0),10.0);break;
77c4762a1bSJed Brown     default: SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_UNKNOWN_TYPE,"unknown initial condition");
78c4762a1bSJed Brown   }
79c4762a1bSJed Brown   PetscFunctionReturn(0);
80c4762a1bSJed Brown }
81c4762a1bSJed Brown 
82c4762a1bSJed Brown static PetscErrorCode PhysicsCreate_Advect(FVCtx *ctx)
83c4762a1bSJed Brown {
84c4762a1bSJed Brown   AdvectCtx      *user;
85c4762a1bSJed Brown 
86c4762a1bSJed Brown   PetscFunctionBeginUser;
879566063dSJacob Faibussowitsch   PetscCall(PetscNew(&user));
88c4762a1bSJed Brown   ctx->physics2.sample2         = PhysicsSample_Advect;
89c4762a1bSJed Brown   ctx->physics2.riemann2        = PhysicsRiemann_Advect;
90c4762a1bSJed Brown   ctx->physics2.characteristic2 = PhysicsCharacteristic_Advect;
91c4762a1bSJed Brown   ctx->physics2.destroy         = PhysicsDestroy_SimpleFree;
92c4762a1bSJed Brown   ctx->physics2.user            = user;
93c4762a1bSJed Brown   ctx->physics2.dof             = 1;
949566063dSJacob Faibussowitsch   PetscCall(PetscStrallocpy("u",&ctx->physics2.fieldname[0]));
95c4762a1bSJed Brown   user->a = 1;
96d0609cedSBarry Smith   PetscOptionsBegin(ctx->comm,ctx->prefix,"Options for advection","");
97c4762a1bSJed Brown   {
989566063dSJacob Faibussowitsch     PetscCall(PetscOptionsReal("-physics_advect_a","Speed","",user->a,&user->a,NULL));
99c4762a1bSJed Brown   }
100d0609cedSBarry Smith   PetscOptionsEnd();
101c4762a1bSJed Brown   PetscFunctionReturn(0);
102c4762a1bSJed Brown }
103c4762a1bSJed Brown 
104c4762a1bSJed Brown PetscErrorCode FVSample_2WaySplit(FVCtx *ctx,DM da,PetscReal time,Vec U)
105c4762a1bSJed Brown {
106c4762a1bSJed Brown   PetscScalar     *u,*uj,xj,xi;
107c4762a1bSJed Brown   PetscInt        i,j,k,dof,xs,xm,Mx;
108c4762a1bSJed Brown   const PetscInt  N = 200;
109c4762a1bSJed Brown   PetscReal       hs,hf;
110c4762a1bSJed Brown 
111c4762a1bSJed Brown   PetscFunctionBeginUser;
1123c633725SBarry Smith   PetscCheck(ctx->physics2.sample2,PETSC_COMM_SELF,PETSC_ERR_SUP,"Physics has not provided a sampling function");
1139566063dSJacob Faibussowitsch   PetscCall(DMDAGetInfo(da,0, &Mx,0,0, 0,0,0, &dof,0,0,0,0,0));
1149566063dSJacob Faibussowitsch   PetscCall(DMDAGetCorners(da,&xs,0,0,&xm,0,0));
1159566063dSJacob Faibussowitsch   PetscCall(DMDAVecGetArray(da,U,&u));
1169566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(dof,&uj));
117c4762a1bSJed Brown   hs   = (ctx->xmax-ctx->xmin)*3.0/8.0/ctx->sf;
118c4762a1bSJed Brown   hf   = (ctx->xmax-ctx->xmin)/4.0/(ctx->fs-ctx->sf);
119c4762a1bSJed Brown   for (i=xs; i<xs+xm; i++) {
120c4762a1bSJed Brown     if (i < ctx->sf) {
121c4762a1bSJed Brown       xi = ctx->xmin+0.5*hs+i*hs;
122c4762a1bSJed Brown       /* Integrate over cell i using trapezoid rule with N points. */
123c4762a1bSJed Brown       for (k=0; k<dof; k++) u[i*dof+k] = 0;
124c4762a1bSJed Brown       for (j=0; j<N+1; j++) {
125c4762a1bSJed Brown         xj = xi+hs*(j-N/2)/(PetscReal)N;
1269566063dSJacob Faibussowitsch         PetscCall((*ctx->physics2.sample2)(ctx->physics2.user,ctx->initial,ctx->bctype,ctx->xmin,ctx->xmax,time,xj,uj));
127c4762a1bSJed Brown         for (k=0; k<dof; k++) u[i*dof+k] += ((j==0 || j==N) ? 0.5 : 1.0)*uj[k]/N;
128c4762a1bSJed Brown       }
129c4762a1bSJed Brown     } else if (i < ctx->fs) {
130c4762a1bSJed Brown       xi = ctx->xmin+ctx->sf*hs+0.5*hf+(i-ctx->sf)*hf;
131c4762a1bSJed Brown       /* Integrate over cell i using trapezoid rule with N points. */
132c4762a1bSJed Brown       for (k=0; k<dof; k++) u[i*dof+k] = 0;
133c4762a1bSJed Brown       for (j=0; j<N+1; j++) {
134c4762a1bSJed Brown         xj = xi+hf*(j-N/2)/(PetscReal)N;
1359566063dSJacob Faibussowitsch         PetscCall((*ctx->physics2.sample2)(ctx->physics2.user,ctx->initial,ctx->bctype,ctx->xmin,ctx->xmax,time,xj,uj));
136c4762a1bSJed Brown         for (k=0; k<dof; k++) u[i*dof+k] += ((j==0 || j==N) ? 0.5 : 1.0)*uj[k]/N;
137c4762a1bSJed Brown       }
138c4762a1bSJed Brown     } else {
139c4762a1bSJed Brown       xi = ctx->xmin+ctx->sf*hs+(ctx->fs-ctx->sf)*hf+0.5*hs+(i-ctx->fs)*hs;
140c4762a1bSJed Brown       /* Integrate over cell i using trapezoid rule with N points. */
141c4762a1bSJed Brown       for (k=0; k<dof; k++) u[i*dof+k] = 0;
142c4762a1bSJed Brown       for (j=0; j<N+1; j++) {
143c4762a1bSJed Brown         xj = xi+hs*(j-N/2)/(PetscReal)N;
1449566063dSJacob Faibussowitsch         PetscCall((*ctx->physics2.sample2)(ctx->physics2.user,ctx->initial,ctx->bctype,ctx->xmin,ctx->xmax,time,xj,uj));
145c4762a1bSJed Brown         for (k=0; k<dof; k++) u[i*dof+k] += ((j==0 || j==N) ? 0.5 : 1.0)*uj[k]/N;
146c4762a1bSJed Brown       }
147c4762a1bSJed Brown     }
148c4762a1bSJed Brown   }
1499566063dSJacob Faibussowitsch   PetscCall(DMDAVecRestoreArray(da,U,&u));
1509566063dSJacob Faibussowitsch   PetscCall(PetscFree(uj));
151c4762a1bSJed Brown   PetscFunctionReturn(0);
152c4762a1bSJed Brown }
153c4762a1bSJed Brown 
154c4762a1bSJed Brown static PetscErrorCode SolutionErrorNorms_2WaySplit(FVCtx *ctx,DM da,PetscReal t,Vec X,PetscReal *nrm1)
155c4762a1bSJed Brown {
156c4762a1bSJed Brown   Vec               Y;
157c4762a1bSJed Brown   PetscInt          i,Mx;
158c4762a1bSJed Brown   const PetscScalar *ptr_X,*ptr_Y;
159c4762a1bSJed Brown   PetscReal         hs,hf;
160c4762a1bSJed Brown 
161c4762a1bSJed Brown   PetscFunctionBeginUser;
1629566063dSJacob Faibussowitsch   PetscCall(VecGetSize(X,&Mx));
1639566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(X,&Y));
1649566063dSJacob Faibussowitsch   PetscCall(FVSample_2WaySplit(ctx,da,t,Y));
165c4762a1bSJed Brown   hs   = (ctx->xmax-ctx->xmin)*3.0/8.0/ctx->sf;
166c4762a1bSJed Brown   hf   = (ctx->xmax-ctx->xmin)/4.0/(ctx->fs-ctx->sf);
1679566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(X,&ptr_X));
1689566063dSJacob Faibussowitsch   PetscCall(VecGetArrayRead(Y,&ptr_Y));
169c4762a1bSJed Brown   for (i=0; i<Mx; i++) {
170c4762a1bSJed Brown     if (i < ctx->sf || i > ctx->fs -1) *nrm1 +=  hs*PetscAbs(ptr_X[i]-ptr_Y[i]);
171c4762a1bSJed Brown     else *nrm1 += hf*PetscAbs(ptr_X[i]-ptr_Y[i]);
172c4762a1bSJed Brown   }
1739566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(X,&ptr_X));
1749566063dSJacob Faibussowitsch   PetscCall(VecRestoreArrayRead(Y,&ptr_Y));
1759566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&Y));
176c4762a1bSJed Brown   PetscFunctionReturn(0);
177c4762a1bSJed Brown }
178c4762a1bSJed Brown 
179c4762a1bSJed Brown PetscErrorCode FVRHSFunction_2WaySplit(TS ts,PetscReal time,Vec X,Vec F,void *vctx)
180c4762a1bSJed Brown {
181c4762a1bSJed Brown   FVCtx          *ctx = (FVCtx*)vctx;
182c4762a1bSJed Brown   PetscInt       i,j,k,Mx,dof,xs,xm,sf = ctx->sf,fs = ctx->fs;
183c4762a1bSJed Brown   PetscReal      hxf,hxs,cfl_idt = 0;
184c4762a1bSJed Brown   PetscScalar    *x,*f,*slope;
185c4762a1bSJed Brown   Vec            Xloc;
186c4762a1bSJed Brown   DM             da;
187c4762a1bSJed Brown 
188c4762a1bSJed Brown   PetscFunctionBeginUser;
1899566063dSJacob Faibussowitsch   PetscCall(TSGetDM(ts,&da));
1909566063dSJacob Faibussowitsch   PetscCall(DMGetLocalVector(da,&Xloc));                          /* Xloc contains ghost points                                     */
1919566063dSJacob Faibussowitsch   PetscCall(DMDAGetInfo(da,0, &Mx,0,0, 0,0,0, &dof,0,0,0,0,0));   /* Mx is the number of center points                              */
192c4762a1bSJed Brown   hxs  = (ctx->xmax-ctx->xmin)*3.0/8.0/ctx->sf;
193c4762a1bSJed Brown   hxf  = (ctx->xmax-ctx->xmin)/4.0/(ctx->fs-ctx->sf);
1949566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalBegin(da,X,INSERT_VALUES,Xloc));       /* X is solution vector which does not contain ghost points       */
1959566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalEnd(da,X,INSERT_VALUES,Xloc));
196c4762a1bSJed Brown 
1979566063dSJacob Faibussowitsch   PetscCall(VecZeroEntries(F));                                   /* F is the right hand side function corresponds to center points */
198c4762a1bSJed Brown 
1999566063dSJacob Faibussowitsch   PetscCall(DMDAVecGetArray(da,Xloc,&x));
2009566063dSJacob Faibussowitsch   PetscCall(DMDAVecGetArray(da,F,&f));
2019566063dSJacob Faibussowitsch   PetscCall(DMDAGetArray(da,PETSC_TRUE,&slope));                  /* contains ghost points                                           */
202c4762a1bSJed Brown 
2039566063dSJacob Faibussowitsch   PetscCall(DMDAGetCorners(da,&xs,0,0,&xm,0,0));
204c4762a1bSJed Brown 
205c4762a1bSJed Brown   if (ctx->bctype == FVBC_OUTFLOW) {
206c4762a1bSJed Brown     for (i=xs-2; i<0; i++) {
207c4762a1bSJed Brown       for (j=0; j<dof; j++) x[i*dof+j] = x[j];
208c4762a1bSJed Brown     }
209c4762a1bSJed Brown     for (i=Mx; i<xs+xm+2; i++) {
210c4762a1bSJed Brown       for (j=0; j<dof; j++) x[i*dof+j] = x[(xs+xm-1)*dof+j];
211c4762a1bSJed Brown     }
212c4762a1bSJed Brown   }
213c4762a1bSJed Brown   for (i=xs-1; i<xs+xm+1; i++) {
214c4762a1bSJed Brown     struct _LimitInfo info;
215c4762a1bSJed Brown     PetscScalar       *cjmpL,*cjmpR;
216c4762a1bSJed Brown     /* Determine the right eigenvectors R, where A = R \Lambda R^{-1} */
2179566063dSJacob Faibussowitsch     PetscCall((*ctx->physics2.characteristic2)(ctx->physics2.user,dof,&x[i*dof],ctx->R,ctx->Rinv,ctx->speeds));
218c4762a1bSJed Brown     /* Evaluate jumps across interfaces (i-1, i) and (i, i+1), put in characteristic basis */
2199566063dSJacob Faibussowitsch     PetscCall(PetscArrayzero(ctx->cjmpLR,2*dof));
220c4762a1bSJed Brown     cjmpL = &ctx->cjmpLR[0];
221c4762a1bSJed Brown     cjmpR = &ctx->cjmpLR[dof];
222c4762a1bSJed Brown     for (j=0; j<dof; j++) {
223c4762a1bSJed Brown       PetscScalar jmpL,jmpR;
224c4762a1bSJed Brown       jmpL = x[(i+0)*dof+j]-x[(i-1)*dof+j];
225c4762a1bSJed Brown       jmpR = x[(i+1)*dof+j]-x[(i+0)*dof+j];
226c4762a1bSJed Brown       for (k=0; k<dof; k++) {
227c4762a1bSJed Brown         cjmpL[k] += ctx->Rinv[k+j*dof]*jmpL;
228c4762a1bSJed Brown         cjmpR[k] += ctx->Rinv[k+j*dof]*jmpR;
229c4762a1bSJed Brown       }
230c4762a1bSJed Brown     }
231c4762a1bSJed Brown     /* Apply limiter to the left and right characteristic jumps */
232c4762a1bSJed Brown     info.m  = dof;
233c4762a1bSJed Brown     info.hxs = hxs;
234c4762a1bSJed Brown     info.hxf = hxf;
235c4762a1bSJed Brown     (*ctx->limit2)(&info,cjmpL,cjmpR,ctx->sf,ctx->fs,i,ctx->cslope);
236c4762a1bSJed Brown     for (j=0; j<dof; j++) {
237c4762a1bSJed Brown       PetscScalar tmp = 0;
238c4762a1bSJed Brown       for (k=0; k<dof; k++) tmp += ctx->R[j+k*dof]*ctx->cslope[k];
239c4762a1bSJed Brown       slope[i*dof+j] = tmp;
240c4762a1bSJed Brown     }
241c4762a1bSJed Brown   }
242c4762a1bSJed Brown 
243c4762a1bSJed Brown   for (i=xs; i<xs+xm+1; i++) {
244c4762a1bSJed Brown     PetscReal   maxspeed;
245c4762a1bSJed Brown     PetscScalar *uL,*uR;
246c4762a1bSJed Brown     uL = &ctx->uLR[0];
247c4762a1bSJed Brown     uR = &ctx->uLR[dof];
248c4762a1bSJed Brown     if (i < sf) { /* slow region */
249c4762a1bSJed Brown       for (j=0; j<dof; j++) {
250c4762a1bSJed Brown         uL[j] = x[(i-1)*dof+j]+slope[(i-1)*dof+j]*hxs/2;
251c4762a1bSJed Brown         uR[j] = x[(i-0)*dof+j]-slope[(i-0)*dof+j]*hxs/2;
252c4762a1bSJed Brown       }
2539566063dSJacob Faibussowitsch       PetscCall((*ctx->physics2.riemann2)(ctx->physics2.user,dof,uL,uR,ctx->flux,&maxspeed));
254c4762a1bSJed Brown       if (i > xs) {
255c4762a1bSJed Brown         for (j=0; j<dof; j++) f[(i-1)*dof+j] -= ctx->flux[j]/hxs;
256c4762a1bSJed Brown       }
257c4762a1bSJed Brown       if (i < xs+xm) {
258c4762a1bSJed Brown         for (j=0; j<dof; j++) f[i*dof+j] += ctx->flux[j]/hxs;
259c4762a1bSJed Brown       }
260c4762a1bSJed Brown     } else if (i == sf) { /* interface between the slow region and the fast region */
261c4762a1bSJed Brown       for (j=0; j<dof; j++) {
262c4762a1bSJed Brown         uL[j] = x[(i-1)*dof+j]+slope[(i-1)*dof+j]*hxs/2;
263c4762a1bSJed Brown         uR[j] = x[(i-0)*dof+j]-slope[(i-0)*dof+j]*hxf/2;
264c4762a1bSJed Brown       }
2659566063dSJacob Faibussowitsch       PetscCall((*ctx->physics2.riemann2)(ctx->physics2.user,dof,uL,uR,ctx->flux,&maxspeed));
266c4762a1bSJed Brown       if (i > xs) {
267c4762a1bSJed Brown         for (j=0; j<dof; j++) f[(i-1)*dof+j] -= ctx->flux[j]/hxs;
268c4762a1bSJed Brown       }
269c4762a1bSJed Brown       if (i < xs+xm) {
270c4762a1bSJed Brown         for (j=0; j<dof; j++) f[i*dof+j] += ctx->flux[j]/hxf;
271c4762a1bSJed Brown       }
272c4762a1bSJed Brown     } else if (i > sf && i < fs) { /* fast region */
273c4762a1bSJed Brown       for (j=0; j<dof; j++) {
274c4762a1bSJed Brown         uL[j] = x[(i-1)*dof+j]+slope[(i-1)*dof+j]*hxf/2;
275c4762a1bSJed Brown         uR[j] = x[(i-0)*dof+j]-slope[(i-0)*dof+j]*hxf/2;
276c4762a1bSJed Brown       }
2779566063dSJacob Faibussowitsch       PetscCall((*ctx->physics2.riemann2)(ctx->physics2.user,dof,uL,uR,ctx->flux,&maxspeed));
278c4762a1bSJed Brown       if (i > xs) {
279c4762a1bSJed Brown         for (j=0; j<dof; j++) f[(i-1)*dof+j] -= ctx->flux[j]/hxf;
280c4762a1bSJed Brown       }
281c4762a1bSJed Brown       if (i < xs+xm) {
282c4762a1bSJed Brown         for (j=0; j<dof; j++) f[i*dof+j] += ctx->flux[j]/hxf;
283c4762a1bSJed Brown       }
284c4762a1bSJed Brown     } else if (i == fs) { /* interface between the fast region and the slow region */
285c4762a1bSJed Brown       for (j=0; j<dof; j++) {
286c4762a1bSJed Brown         uL[j] = x[(i-1)*dof+j]+slope[(i-1)*dof+j]*hxf/2;
287c4762a1bSJed Brown         uR[j] = x[(i-0)*dof+j]-slope[(i-0)*dof+j]*hxs/2;
288c4762a1bSJed Brown       }
2899566063dSJacob Faibussowitsch       PetscCall((*ctx->physics2.riemann2)(ctx->physics2.user,dof,uL,uR,ctx->flux,&maxspeed));
290c4762a1bSJed Brown       if (i > xs) {
291c4762a1bSJed Brown         for (j=0; j<dof; j++) f[(i-1)*dof+j] -= ctx->flux[j]/hxf;
292c4762a1bSJed Brown       }
293c4762a1bSJed Brown       if (i < xs+xm) {
294c4762a1bSJed Brown         for (j=0; j<dof; j++) f[i*dof+j] += ctx->flux[j]/hxs;
295c4762a1bSJed Brown       }
296c4762a1bSJed Brown     } else { /* slow region */
297c4762a1bSJed Brown       for (j=0; j<dof; j++) {
298c4762a1bSJed Brown         uL[j] = x[(i-1)*dof+j]+slope[(i-1)*dof+j]*hxs/2;
299c4762a1bSJed Brown         uR[j] = x[(i-0)*dof+j]-slope[(i-0)*dof+j]*hxs/2;
300c4762a1bSJed Brown       }
3019566063dSJacob Faibussowitsch       PetscCall((*ctx->physics2.riemann2)(ctx->physics2.user,dof,uL,uR,ctx->flux,&maxspeed));
302c4762a1bSJed Brown       cfl_idt = PetscMax(cfl_idt,PetscAbsScalar(maxspeed/hxs)); /* Max allowable value of 1/Delta t */
303c4762a1bSJed Brown       if (i > xs) {
304c4762a1bSJed Brown         for (j=0; j<dof; j++) f[(i-1)*dof+j] -= ctx->flux[j]/hxs;
305c4762a1bSJed Brown       }
306c4762a1bSJed Brown       if (i < xs+xm) {
307c4762a1bSJed Brown         for (j=0; j<dof; j++) f[i*dof+j] += ctx->flux[j]/hxs;
308c4762a1bSJed Brown       }
309c4762a1bSJed Brown     }
310c4762a1bSJed Brown   }
3119566063dSJacob Faibussowitsch   PetscCall(DMDAVecRestoreArray(da,Xloc,&x));
3129566063dSJacob Faibussowitsch   PetscCall(DMDAVecRestoreArray(da,F,&f));
3139566063dSJacob Faibussowitsch   PetscCall(DMDARestoreArray(da,PETSC_TRUE,&slope));
3149566063dSJacob Faibussowitsch   PetscCall(DMRestoreLocalVector(da,&Xloc));
3159566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Allreduce(&cfl_idt,&ctx->cfl_idt,1,MPIU_SCALAR,MPIU_MAX,PetscObjectComm((PetscObject)da)));
316c4762a1bSJed Brown   if (0) {
317c4762a1bSJed Brown     /* We need to a way to inform the TS of a CFL constraint, this is a debugging fragment */
318c4762a1bSJed Brown     PetscReal dt,tnow;
3199566063dSJacob Faibussowitsch     PetscCall(TSGetTimeStep(ts,&dt));
3209566063dSJacob Faibussowitsch     PetscCall(TSGetTime(ts,&tnow));
321c4762a1bSJed Brown     if (dt > 0.5/ctx->cfl_idt) {
322c4762a1bSJed Brown       if (1) {
3239566063dSJacob Faibussowitsch         PetscCall(PetscPrintf(ctx->comm,"Stability constraint exceeded at t=%g, dt %g > %g\n",(double)tnow,(double)dt,(double)(0.5/ctx->cfl_idt)));
32498921bdaSJacob Faibussowitsch       } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_UNKNOWN_TYPE,"Stability constraint exceeded, %g > %g",(double)dt,(double)(ctx->cfl/ctx->cfl_idt));
325c4762a1bSJed Brown     }
326c4762a1bSJed Brown   }
327c4762a1bSJed Brown   PetscFunctionReturn(0);
328c4762a1bSJed Brown }
329c4762a1bSJed Brown 
330c4762a1bSJed Brown /* --------------------------------- Finite Volume Solver for slow components ----------------------------------- */
331c4762a1bSJed Brown PetscErrorCode FVRHSFunctionslow_2WaySplit(TS ts,PetscReal time,Vec X,Vec F,void *vctx)
332c4762a1bSJed Brown {
333c4762a1bSJed Brown   FVCtx          *ctx = (FVCtx*)vctx;
334c4762a1bSJed Brown   PetscInt       i,j,k,Mx,dof,xs,xm,islow = 0,sf = ctx->sf,fs = ctx->fs,lsbwidth = ctx->lsbwidth,rsbwidth = ctx->rsbwidth;
335c4762a1bSJed Brown   PetscReal      hxs,hxf,cfl_idt = 0;
336c4762a1bSJed Brown   PetscScalar    *x,*f,*slope;
337c4762a1bSJed Brown   Vec            Xloc;
338c4762a1bSJed Brown   DM             da;
339c4762a1bSJed Brown 
340c4762a1bSJed Brown   PetscFunctionBeginUser;
3419566063dSJacob Faibussowitsch   PetscCall(TSGetDM(ts,&da));
3429566063dSJacob Faibussowitsch   PetscCall(DMGetLocalVector(da,&Xloc));
3439566063dSJacob Faibussowitsch   PetscCall(DMDAGetInfo(da,0, &Mx,0,0, 0,0,0, &dof,0,0,0,0,0));
344c4762a1bSJed Brown   hxs  = (ctx->xmax-ctx->xmin)*3.0/8.0/ctx->sf;
345c4762a1bSJed Brown   hxf  = (ctx->xmax-ctx->xmin)/4.0/(ctx->fs-ctx->sf);
3469566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalBegin(da,X,INSERT_VALUES,Xloc));
3479566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalEnd(da,X,INSERT_VALUES,Xloc));
3489566063dSJacob Faibussowitsch   PetscCall(VecZeroEntries(F));
3499566063dSJacob Faibussowitsch   PetscCall(DMDAVecGetArray(da,Xloc,&x));
3509566063dSJacob Faibussowitsch   PetscCall(VecGetArray(F,&f));
3519566063dSJacob Faibussowitsch   PetscCall(DMDAGetArray(da,PETSC_TRUE,&slope));
3529566063dSJacob Faibussowitsch   PetscCall(DMDAGetCorners(da,&xs,0,0,&xm,0,0));
353c4762a1bSJed Brown 
354c4762a1bSJed Brown   if (ctx->bctype == FVBC_OUTFLOW) {
355c4762a1bSJed Brown     for (i=xs-2; i<0; i++) {
356c4762a1bSJed Brown       for (j=0; j<dof; j++) x[i*dof+j] = x[j];
357c4762a1bSJed Brown     }
358c4762a1bSJed Brown     for (i=Mx; i<xs+xm+2; i++) {
359c4762a1bSJed Brown       for (j=0; j<dof; j++) x[i*dof+j] = x[(xs+xm-1)*dof+j];
360c4762a1bSJed Brown     }
361c4762a1bSJed Brown   }
362c4762a1bSJed Brown   for (i=xs-1; i<xs+xm+1; i++) {
363c4762a1bSJed Brown     struct _LimitInfo info;
364c4762a1bSJed Brown     PetscScalar       *cjmpL,*cjmpR;
365c4762a1bSJed Brown     if (i < sf-lsbwidth+1 || i > fs+rsbwidth-2) { /* slow components and the first and last fast components */
366c4762a1bSJed Brown       /* Determine the right eigenvectors R, where A = R \Lambda R^{-1} */
3679566063dSJacob Faibussowitsch       PetscCall((*ctx->physics2.characteristic2)(ctx->physics2.user,dof,&x[i*dof],ctx->R,ctx->Rinv,ctx->speeds));
368c4762a1bSJed Brown       /* Evaluate jumps across interfaces (i-1, i) and (i, i+1), put in characteristic basis */
3699566063dSJacob Faibussowitsch       PetscCall(PetscArrayzero(ctx->cjmpLR,2*dof));
370c4762a1bSJed Brown       cjmpL = &ctx->cjmpLR[0];
371c4762a1bSJed Brown       cjmpR = &ctx->cjmpLR[dof];
372c4762a1bSJed Brown       for (j=0; j<dof; j++) {
373c4762a1bSJed Brown         PetscScalar jmpL,jmpR;
374c4762a1bSJed Brown         jmpL = x[(i+0)*dof+j]-x[(i-1)*dof+j];
375c4762a1bSJed Brown         jmpR = x[(i+1)*dof+j]-x[(i+0)*dof+j];
376c4762a1bSJed Brown         for (k=0; k<dof; k++) {
377c4762a1bSJed Brown           cjmpL[k] += ctx->Rinv[k+j*dof]*jmpL;
378c4762a1bSJed Brown           cjmpR[k] += ctx->Rinv[k+j*dof]*jmpR;
379c4762a1bSJed Brown         }
380c4762a1bSJed Brown       }
381c4762a1bSJed Brown       /* Apply limiter to the left and right characteristic jumps */
382c4762a1bSJed Brown       info.m  = dof;
383c4762a1bSJed Brown       info.hxs = hxs;
384c4762a1bSJed Brown       info.hxf = hxf;
385c4762a1bSJed Brown       (*ctx->limit2)(&info,cjmpL,cjmpR,ctx->sf,ctx->fs,i,ctx->cslope);
386c4762a1bSJed Brown       for (j=0; j<dof; j++) {
387c4762a1bSJed Brown         PetscScalar tmp = 0;
388c4762a1bSJed Brown         for (k=0; k<dof; k++) tmp += ctx->R[j+k*dof]*ctx->cslope[k];
389c4762a1bSJed Brown           slope[i*dof+j] = tmp;
390c4762a1bSJed Brown       }
391c4762a1bSJed Brown     }
392c4762a1bSJed Brown   }
393c4762a1bSJed Brown 
394c4762a1bSJed Brown   for (i=xs; i<xs+xm+1; i++) {
395c4762a1bSJed Brown     PetscReal   maxspeed;
396c4762a1bSJed Brown     PetscScalar *uL,*uR;
397c4762a1bSJed Brown     uL = &ctx->uLR[0];
398c4762a1bSJed Brown     uR = &ctx->uLR[dof];
399c4762a1bSJed Brown     if (i < sf-lsbwidth) { /* slow region */
400c4762a1bSJed Brown       for (j=0; j<dof; j++) {
401c4762a1bSJed Brown         uL[j] = x[(i-1)*dof+j]+slope[(i-1)*dof+j]*hxs/2;
402c4762a1bSJed Brown         uR[j] = x[(i-0)*dof+j]-slope[(i-0)*dof+j]*hxs/2;
403c4762a1bSJed Brown       }
4049566063dSJacob Faibussowitsch       PetscCall((*ctx->physics2.riemann2)(ctx->physics2.user,dof,uL,uR,ctx->flux,&maxspeed));
405c4762a1bSJed Brown       cfl_idt = PetscMax(cfl_idt,PetscAbsScalar(maxspeed/hxs)); /* Max allowable value of 1/Delta t */
406c4762a1bSJed Brown       if (i > xs) {
407c4762a1bSJed Brown         for (j=0; j<dof; j++) f[(islow-1)*dof+j] -= ctx->flux[j]/hxs;
408c4762a1bSJed Brown       }
409c4762a1bSJed Brown       if (i < xs+xm) {
410c4762a1bSJed Brown         for (j=0; j<dof; j++) f[islow*dof+j] += ctx->flux[j]/hxs;
411c4762a1bSJed Brown         islow++;
412c4762a1bSJed Brown       }
413c4762a1bSJed Brown     }
414c4762a1bSJed Brown     if (i == sf-lsbwidth) { /* interface between the slow region and the fast region */
415c4762a1bSJed Brown       for (j=0; j<dof; j++) {
416c4762a1bSJed Brown         uL[j] = x[(i-1)*dof+j]+slope[(i-1)*dof+j]*hxs/2;
417c4762a1bSJed Brown         uR[j] = x[(i-0)*dof+j]-slope[(i-0)*dof+j]*hxs/2;
418c4762a1bSJed Brown       }
4199566063dSJacob Faibussowitsch       PetscCall((*ctx->physics2.riemann2)(ctx->physics2.user,dof,uL,uR,ctx->flux,&maxspeed));
420c4762a1bSJed Brown       if (i > xs) {
421c4762a1bSJed Brown         for (j=0; j<dof; j++) f[(islow-1)*dof+j] -= ctx->flux[j]/hxs;
422c4762a1bSJed Brown       }
423c4762a1bSJed Brown     }
424c4762a1bSJed Brown     if (i == fs+rsbwidth) { /* slow region */
425c4762a1bSJed Brown       for (j=0; j<dof; j++) {
426c4762a1bSJed Brown         uL[j] = x[(i-1)*dof+j]+slope[(i-1)*dof+j]*hxs/2;
427c4762a1bSJed Brown         uR[j] = x[(i-0)*dof+j]-slope[(i-0)*dof+j]*hxs/2;
428c4762a1bSJed Brown       }
4299566063dSJacob Faibussowitsch       PetscCall((*ctx->physics2.riemann2)(ctx->physics2.user,dof,uL,uR,ctx->flux,&maxspeed));
430c4762a1bSJed Brown       if (i < xs+xm) {
431c4762a1bSJed Brown         for (j=0; j<dof; j++) f[islow*dof+j] += ctx->flux[j]/hxs;
432c4762a1bSJed Brown         islow++;
433c4762a1bSJed Brown       }
434c4762a1bSJed Brown     }
435c4762a1bSJed Brown     if (i > fs+rsbwidth) { /* slow region */
436c4762a1bSJed Brown       for (j=0; j<dof; j++) {
437c4762a1bSJed Brown         uL[j] = x[(i-1)*dof+j]+slope[(i-1)*dof+j]*hxs/2;
438c4762a1bSJed Brown         uR[j] = x[(i-0)*dof+j]-slope[(i-0)*dof+j]*hxs/2;
439c4762a1bSJed Brown       }
4409566063dSJacob Faibussowitsch       PetscCall((*ctx->physics2.riemann2)(ctx->physics2.user,dof,uL,uR,ctx->flux,&maxspeed));
441c4762a1bSJed Brown       if (i > xs) {
442c4762a1bSJed Brown         for (j=0; j<dof; j++) f[(islow-1)*dof+j] -= ctx->flux[j]/hxs;
443c4762a1bSJed Brown       }
444c4762a1bSJed Brown       if (i < xs+xm) {
445c4762a1bSJed Brown         for (j=0; j<dof; j++) f[islow*dof+j] += ctx->flux[j]/hxs;
446c4762a1bSJed Brown         islow++;
447c4762a1bSJed Brown       }
448c4762a1bSJed Brown     }
449c4762a1bSJed Brown   }
4509566063dSJacob Faibussowitsch   PetscCall(DMDAVecRestoreArray(da,Xloc,&x));
4519566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(F,&f));
4529566063dSJacob Faibussowitsch   PetscCall(DMDARestoreArray(da,PETSC_TRUE,&slope));
4539566063dSJacob Faibussowitsch   PetscCall(DMRestoreLocalVector(da,&Xloc));
4549566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Allreduce(&cfl_idt,&ctx->cfl_idt,1,MPIU_SCALAR,MPIU_MAX,PetscObjectComm((PetscObject)da)));
455c4762a1bSJed Brown   PetscFunctionReturn(0);
456c4762a1bSJed Brown }
457c4762a1bSJed Brown 
458c4762a1bSJed Brown PetscErrorCode FVRHSFunctionslowbuffer_2WaySplit(TS ts,PetscReal time,Vec X,Vec F,void *vctx)
459c4762a1bSJed Brown {
460c4762a1bSJed Brown   FVCtx          *ctx = (FVCtx*)vctx;
461c4762a1bSJed Brown   PetscInt       i,j,k,Mx,dof,xs,xm,islow = 0,sf = ctx->sf,fs = ctx->fs,lsbwidth = ctx->lsbwidth,rsbwidth = ctx->rsbwidth;
462c4762a1bSJed Brown   PetscReal      hxs,hxf;
463c4762a1bSJed Brown   PetscScalar    *x,*f,*slope;
464c4762a1bSJed Brown   Vec            Xloc;
465c4762a1bSJed Brown   DM             da;
466c4762a1bSJed Brown 
467c4762a1bSJed Brown   PetscFunctionBeginUser;
4689566063dSJacob Faibussowitsch   PetscCall(TSGetDM(ts,&da));
4699566063dSJacob Faibussowitsch   PetscCall(DMGetLocalVector(da,&Xloc));
4709566063dSJacob Faibussowitsch   PetscCall(DMDAGetInfo(da,0, &Mx,0,0, 0,0,0, &dof,0,0,0,0,0));
471c4762a1bSJed Brown   hxs  = (ctx->xmax-ctx->xmin)*3.0/8.0/ctx->sf;
472c4762a1bSJed Brown   hxf  = (ctx->xmax-ctx->xmin)/4.0/(ctx->fs-ctx->sf);
4739566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalBegin(da,X,INSERT_VALUES,Xloc));
4749566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalEnd(da,X,INSERT_VALUES,Xloc));
4759566063dSJacob Faibussowitsch   PetscCall(VecZeroEntries(F));
4769566063dSJacob Faibussowitsch   PetscCall(DMDAVecGetArray(da,Xloc,&x));
4779566063dSJacob Faibussowitsch   PetscCall(VecGetArray(F,&f));
4789566063dSJacob Faibussowitsch   PetscCall(DMDAGetArray(da,PETSC_TRUE,&slope));
4799566063dSJacob Faibussowitsch   PetscCall(DMDAGetCorners(da,&xs,0,0,&xm,0,0));
480c4762a1bSJed Brown 
481c4762a1bSJed Brown   if (ctx->bctype == FVBC_OUTFLOW) {
482c4762a1bSJed Brown     for (i=xs-2; i<0; i++) {
483c4762a1bSJed Brown       for (j=0; j<dof; j++) x[i*dof+j] = x[j];
484c4762a1bSJed Brown     }
485c4762a1bSJed Brown     for (i=Mx; i<xs+xm+2; i++) {
486c4762a1bSJed Brown       for (j=0; j<dof; j++) x[i*dof+j] = x[(xs+xm-1)*dof+j];
487c4762a1bSJed Brown     }
488c4762a1bSJed Brown   }
489c4762a1bSJed Brown   for (i=xs-1; i<xs+xm+1; i++) {
490c4762a1bSJed Brown     struct _LimitInfo info;
491c4762a1bSJed Brown     PetscScalar       *cjmpL,*cjmpR;
492c4762a1bSJed Brown     if ((i > sf-lsbwidth-2 && i < sf+1) || (i > fs-2 && i < fs+rsbwidth+1)) {
493c4762a1bSJed Brown       /* Determine the right eigenvectors R, where A = R \Lambda R^{-1} */
4949566063dSJacob Faibussowitsch       PetscCall((*ctx->physics2.characteristic2)(ctx->physics2.user,dof,&x[i*dof],ctx->R,ctx->Rinv,ctx->speeds));
495c4762a1bSJed Brown       /* Evaluate jumps across interfaces (i-1, i) and (i, i+1), put in characteristic basis */
4969566063dSJacob Faibussowitsch       PetscCall(PetscArrayzero(ctx->cjmpLR,2*dof));
497c4762a1bSJed Brown       cjmpL = &ctx->cjmpLR[0];
498c4762a1bSJed Brown       cjmpR = &ctx->cjmpLR[dof];
499c4762a1bSJed Brown       for (j=0; j<dof; j++) {
500c4762a1bSJed Brown         PetscScalar jmpL,jmpR;
501c4762a1bSJed Brown         jmpL = x[(i+0)*dof+j]-x[(i-1)*dof+j];
502c4762a1bSJed Brown         jmpR = x[(i+1)*dof+j]-x[(i+0)*dof+j];
503c4762a1bSJed Brown         for (k=0; k<dof; k++) {
504c4762a1bSJed Brown           cjmpL[k] += ctx->Rinv[k+j*dof]*jmpL;
505c4762a1bSJed Brown           cjmpR[k] += ctx->Rinv[k+j*dof]*jmpR;
506c4762a1bSJed Brown         }
507c4762a1bSJed Brown       }
508c4762a1bSJed Brown       /* Apply limiter to the left and right characteristic jumps */
509c4762a1bSJed Brown       info.m  = dof;
510c4762a1bSJed Brown       info.hxs = hxs;
511c4762a1bSJed Brown       info.hxf = hxf;
512c4762a1bSJed Brown       (*ctx->limit2)(&info,cjmpL,cjmpR,ctx->sf,ctx->fs,i,ctx->cslope);
513c4762a1bSJed Brown       for (j=0; j<dof; j++) {
514c4762a1bSJed Brown         PetscScalar tmp = 0;
515c4762a1bSJed Brown         for (k=0; k<dof; k++) tmp += ctx->R[j+k*dof]*ctx->cslope[k];
516c4762a1bSJed Brown           slope[i*dof+j] = tmp;
517c4762a1bSJed Brown       }
518c4762a1bSJed Brown     }
519c4762a1bSJed Brown   }
520c4762a1bSJed Brown 
521c4762a1bSJed Brown   for (i=xs; i<xs+xm+1; i++) {
522c4762a1bSJed Brown     PetscReal   maxspeed;
523c4762a1bSJed Brown     PetscScalar *uL,*uR;
524c4762a1bSJed Brown     uL = &ctx->uLR[0];
525c4762a1bSJed Brown     uR = &ctx->uLR[dof];
526c4762a1bSJed Brown     if (i == sf-lsbwidth) {
527c4762a1bSJed Brown       for (j=0; j<dof; j++) {
528c4762a1bSJed Brown         uL[j] = x[(i-1)*dof+j]+slope[(i-1)*dof+j]*hxs/2;
529c4762a1bSJed Brown         uR[j] = x[(i-0)*dof+j]-slope[(i-0)*dof+j]*hxs/2;
530c4762a1bSJed Brown       }
5319566063dSJacob Faibussowitsch       PetscCall((*ctx->physics2.riemann2)(ctx->physics2.user,dof,uL,uR,ctx->flux,&maxspeed));
532c4762a1bSJed Brown       if (i < xs+xm) {
533c4762a1bSJed Brown         for (j=0; j<dof; j++) f[islow*dof+j] += ctx->flux[j]/hxs;
534c4762a1bSJed Brown         islow++;
535c4762a1bSJed Brown       }
536c4762a1bSJed Brown     }
537c4762a1bSJed Brown     if (i > sf-lsbwidth && i < sf) {
538c4762a1bSJed Brown       for (j=0; j<dof; j++) {
539c4762a1bSJed Brown         uL[j] = x[(i-1)*dof+j]+slope[(i-1)*dof+j]*hxs/2;
540c4762a1bSJed Brown         uR[j] = x[(i-0)*dof+j]-slope[(i-0)*dof+j]*hxs/2;
541c4762a1bSJed Brown       }
5429566063dSJacob Faibussowitsch       PetscCall((*ctx->physics2.riemann2)(ctx->physics2.user,dof,uL,uR,ctx->flux,&maxspeed));
543c4762a1bSJed Brown       if (i > xs) {
544c4762a1bSJed Brown         for (j=0; j<dof; j++) f[(islow-1)*dof+j] -= ctx->flux[j]/hxs;
545c4762a1bSJed Brown       }
546c4762a1bSJed Brown       if (i < xs+xm) {
547c4762a1bSJed Brown         for (j=0; j<dof; j++) f[islow*dof+j] += ctx->flux[j]/hxs;
548c4762a1bSJed Brown         islow++;
549c4762a1bSJed Brown       }
550c4762a1bSJed Brown     }
551c4762a1bSJed Brown     if (i == sf) { /* interface between the slow region and the fast region */
552c4762a1bSJed Brown       for (j=0; j<dof; j++) {
553c4762a1bSJed Brown         uL[j] = x[(i-1)*dof+j]+slope[(i-1)*dof+j]*hxs/2;
554c4762a1bSJed Brown         uR[j] = x[(i-0)*dof+j]-slope[(i-0)*dof+j]*hxf/2;
555c4762a1bSJed Brown       }
5569566063dSJacob Faibussowitsch       PetscCall((*ctx->physics2.riemann2)(ctx->physics2.user,dof,uL,uR,ctx->flux,&maxspeed));
557c4762a1bSJed Brown       if (i > xs) {
558c4762a1bSJed Brown         for (j=0; j<dof; j++) f[(islow-1)*dof+j] -= ctx->flux[j]/hxs;
559c4762a1bSJed Brown       }
560c4762a1bSJed Brown     }
561c4762a1bSJed Brown     if (i == fs) { /* interface between the fast region and the slow region */
562c4762a1bSJed Brown       for (j=0; j<dof; j++) {
563c4762a1bSJed Brown         uL[j] = x[(i-1)*dof+j]+slope[(i-1)*dof+j]*hxf/2;
564c4762a1bSJed Brown         uR[j] = x[(i-0)*dof+j]-slope[(i-0)*dof+j]*hxs/2;
565c4762a1bSJed Brown       }
5669566063dSJacob Faibussowitsch       PetscCall((*ctx->physics2.riemann2)(ctx->physics2.user,dof,uL,uR,ctx->flux,&maxspeed));
567c4762a1bSJed Brown       if (i < xs+xm) {
568c4762a1bSJed Brown         for (j=0; j<dof; j++) f[islow*dof+j] += ctx->flux[j]/hxs;
569c4762a1bSJed Brown         islow++;
570c4762a1bSJed Brown       }
571c4762a1bSJed Brown     }
572c4762a1bSJed Brown     if (i > fs && i < fs+rsbwidth) {
573c4762a1bSJed Brown       for (j=0; j<dof; j++) {
574c4762a1bSJed Brown         uL[j] = x[(i-1)*dof+j]+slope[(i-1)*dof+j]*hxs/2;
575c4762a1bSJed Brown         uR[j] = x[(i-0)*dof+j]-slope[(i-0)*dof+j]*hxs/2;
576c4762a1bSJed Brown       }
5779566063dSJacob Faibussowitsch       PetscCall((*ctx->physics2.riemann2)(ctx->physics2.user,dof,uL,uR,ctx->flux,&maxspeed));
578c4762a1bSJed Brown       if (i > xs) {
579c4762a1bSJed Brown         for (j=0; j<dof; j++) f[(islow-1)*dof+j] -= ctx->flux[j]/hxs;
580c4762a1bSJed Brown       }
581c4762a1bSJed Brown       if (i < xs+xm) {
582c4762a1bSJed Brown         for (j=0; j<dof; j++) f[islow*dof+j] += ctx->flux[j]/hxs;
583c4762a1bSJed Brown         islow++;
584c4762a1bSJed Brown       }
585c4762a1bSJed Brown     }
586c4762a1bSJed Brown     if (i == fs+rsbwidth) {
587c4762a1bSJed Brown       for (j=0; j<dof; j++) {
588c4762a1bSJed Brown         uL[j] = x[(i-1)*dof+j]+slope[(i-1)*dof+j]*hxs/2;
589c4762a1bSJed Brown         uR[j] = x[(i-0)*dof+j]-slope[(i-0)*dof+j]*hxs/2;
590c4762a1bSJed Brown       }
5919566063dSJacob Faibussowitsch       PetscCall((*ctx->physics2.riemann2)(ctx->physics2.user,dof,uL,uR,ctx->flux,&maxspeed));
592c4762a1bSJed Brown       if (i > xs) {
593c4762a1bSJed Brown         for (j=0; j<dof; j++) f[(islow-1)*dof+j] -= ctx->flux[j]/hxs;
594c4762a1bSJed Brown       }
595c4762a1bSJed Brown     }
596c4762a1bSJed Brown   }
5979566063dSJacob Faibussowitsch   PetscCall(DMDAVecRestoreArray(da,Xloc,&x));
5989566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(F,&f));
5999566063dSJacob Faibussowitsch   PetscCall(DMDARestoreArray(da,PETSC_TRUE,&slope));
6009566063dSJacob Faibussowitsch   PetscCall(DMRestoreLocalVector(da,&Xloc));
601c4762a1bSJed Brown   PetscFunctionReturn(0);
602c4762a1bSJed Brown }
603c4762a1bSJed Brown 
604c4762a1bSJed Brown /* --------------------------------- Finite Volume Solver for fast  parts ----------------------------------- */
605c4762a1bSJed Brown PetscErrorCode FVRHSFunctionfast_2WaySplit(TS ts,PetscReal time,Vec X,Vec F,void *vctx)
606c4762a1bSJed Brown {
607c4762a1bSJed Brown   FVCtx          *ctx = (FVCtx*)vctx;
608c4762a1bSJed Brown   PetscInt       i,j,k,Mx,dof,xs,xm,ifast = 0,sf = ctx->sf,fs = ctx->fs;
609c4762a1bSJed Brown   PetscReal      hxs,hxf;
610c4762a1bSJed Brown   PetscScalar    *x,*f,*slope;
611c4762a1bSJed Brown   Vec            Xloc;
612c4762a1bSJed Brown   DM             da;
613c4762a1bSJed Brown 
614c4762a1bSJed Brown   PetscFunctionBeginUser;
6159566063dSJacob Faibussowitsch   PetscCall(TSGetDM(ts,&da));
6169566063dSJacob Faibussowitsch   PetscCall(DMGetLocalVector(da,&Xloc));
6179566063dSJacob Faibussowitsch   PetscCall(DMDAGetInfo(da,0, &Mx,0,0, 0,0,0, &dof,0,0,0,0,0));
618c4762a1bSJed Brown   hxs  = (ctx->xmax-ctx->xmin)*3.0/8.0/ctx->sf;
619c4762a1bSJed Brown   hxf  = (ctx->xmax-ctx->xmin)/4.0/(ctx->fs-ctx->sf);
6209566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalBegin(da,X,INSERT_VALUES,Xloc));
6219566063dSJacob Faibussowitsch   PetscCall(DMGlobalToLocalEnd(da,X,INSERT_VALUES,Xloc));
6229566063dSJacob Faibussowitsch   PetscCall(VecZeroEntries(F));
6239566063dSJacob Faibussowitsch   PetscCall(DMDAVecGetArray(da,Xloc,&x));
6249566063dSJacob Faibussowitsch   PetscCall(VecGetArray(F,&f));
6259566063dSJacob Faibussowitsch   PetscCall(DMDAGetArray(da,PETSC_TRUE,&slope));
6269566063dSJacob Faibussowitsch   PetscCall(DMDAGetCorners(da,&xs,0,0,&xm,0,0));
627c4762a1bSJed Brown 
628c4762a1bSJed Brown   if (ctx->bctype == FVBC_OUTFLOW) {
629c4762a1bSJed Brown     for (i=xs-2; i<0; i++) {
630c4762a1bSJed Brown       for (j=0; j<dof; j++) x[i*dof+j] = x[j];
631c4762a1bSJed Brown     }
632c4762a1bSJed Brown     for (i=Mx; i<xs+xm+2; i++) {
633c4762a1bSJed Brown       for (j=0; j<dof; j++) x[i*dof+j] = x[(xs+xm-1)*dof+j];
634c4762a1bSJed Brown     }
635c4762a1bSJed Brown   }
636c4762a1bSJed Brown   for (i=xs-1; i<xs+xm+1; i++) {
637c4762a1bSJed Brown     struct _LimitInfo info;
638c4762a1bSJed Brown     PetscScalar       *cjmpL,*cjmpR;
639c4762a1bSJed Brown     if (i > sf-2 && i < fs+1) {
6409566063dSJacob Faibussowitsch       PetscCall((*ctx->physics2.characteristic2)(ctx->physics2.user,dof,&x[i*dof],ctx->R,ctx->Rinv,ctx->speeds));
6419566063dSJacob Faibussowitsch       PetscCall(PetscArrayzero(ctx->cjmpLR,2*dof));
642c4762a1bSJed Brown       cjmpL = &ctx->cjmpLR[0];
643c4762a1bSJed Brown       cjmpR = &ctx->cjmpLR[dof];
644c4762a1bSJed Brown       for (j=0; j<dof; j++) {
645c4762a1bSJed Brown         PetscScalar jmpL,jmpR;
646c4762a1bSJed Brown         jmpL = x[(i+0)*dof+j]-x[(i-1)*dof+j];
647c4762a1bSJed Brown         jmpR = x[(i+1)*dof+j]-x[(i+0)*dof+j];
648c4762a1bSJed Brown         for (k=0; k<dof; k++) {
649c4762a1bSJed Brown           cjmpL[k] += ctx->Rinv[k+j*dof]*jmpL;
650c4762a1bSJed Brown           cjmpR[k] += ctx->Rinv[k+j*dof]*jmpR;
651c4762a1bSJed Brown         }
652c4762a1bSJed Brown       }
653c4762a1bSJed Brown       /* Apply limiter to the left and right characteristic jumps */
654c4762a1bSJed Brown       info.m  = dof;
655c4762a1bSJed Brown       info.hxs = hxs;
656c4762a1bSJed Brown       info.hxf = hxf;
657c4762a1bSJed Brown       (*ctx->limit2)(&info,cjmpL,cjmpR,ctx->sf,ctx->fs,i,ctx->cslope);
658c4762a1bSJed Brown       for (j=0; j<dof; j++) {
659c4762a1bSJed Brown       PetscScalar tmp = 0;
660c4762a1bSJed Brown       for (k=0; k<dof; k++) tmp += ctx->R[j+k*dof]*ctx->cslope[k];
661c4762a1bSJed Brown         slope[i*dof+j] = tmp;
662c4762a1bSJed Brown       }
663c4762a1bSJed Brown     }
664c4762a1bSJed Brown   }
665c4762a1bSJed Brown 
666c4762a1bSJed Brown   for (i=xs; i<xs+xm+1; i++) {
667c4762a1bSJed Brown     PetscReal   maxspeed;
668c4762a1bSJed Brown     PetscScalar *uL,*uR;
669c4762a1bSJed Brown     uL = &ctx->uLR[0];
670c4762a1bSJed Brown     uR = &ctx->uLR[dof];
671c4762a1bSJed Brown     if (i == sf) { /* interface between the slow region and the fast region */
672c4762a1bSJed Brown       for (j=0; j<dof; j++) {
673c4762a1bSJed Brown         uL[j] = x[(i-1)*dof+j]+slope[(i-1)*dof+j]*hxs/2;
674c4762a1bSJed Brown         uR[j] = x[(i-0)*dof+j]-slope[(i-0)*dof+j]*hxf/2;
675c4762a1bSJed Brown       }
6769566063dSJacob Faibussowitsch       PetscCall((*ctx->physics2.riemann2)(ctx->physics2.user,dof,uL,uR,ctx->flux,&maxspeed));
677c4762a1bSJed Brown       if (i < xs+xm) {
678c4762a1bSJed Brown         for (j=0; j<dof; j++) f[ifast*dof+j] += ctx->flux[j]/hxf;
679c4762a1bSJed Brown         ifast++;
680c4762a1bSJed Brown       }
681c4762a1bSJed Brown     }
682c4762a1bSJed Brown     if (i > sf && i < fs) { /* fast region */
683c4762a1bSJed Brown       for (j=0; j<dof; j++) {
684c4762a1bSJed Brown         uL[j] = x[(i-1)*dof+j]+slope[(i-1)*dof+j]*hxf/2;
685c4762a1bSJed Brown         uR[j] = x[(i-0)*dof+j]-slope[(i-0)*dof+j]*hxf/2;
686c4762a1bSJed Brown       }
6879566063dSJacob Faibussowitsch       PetscCall((*ctx->physics2.riemann2)(ctx->physics2.user,dof,uL,uR,ctx->flux,&maxspeed));
688c4762a1bSJed Brown       if (i > xs) {
689c4762a1bSJed Brown         for (j=0; j<dof; j++) f[(ifast-1)*dof+j] -= ctx->flux[j]/hxf;
690c4762a1bSJed Brown       }
691c4762a1bSJed Brown       if (i < xs+xm) {
692c4762a1bSJed Brown         for (j=0; j<dof; j++) f[ifast*dof+j] += ctx->flux[j]/hxf;
693c4762a1bSJed Brown         ifast++;
694c4762a1bSJed Brown       }
695c4762a1bSJed Brown     }
696c4762a1bSJed Brown     if (i == fs) { /* interface between the fast region and the slow region */
697c4762a1bSJed Brown       for (j=0; j<dof; j++) {
698c4762a1bSJed Brown         uL[j] = x[(i-1)*dof+j]+slope[(i-1)*dof+j]*hxf/2;
699c4762a1bSJed Brown         uR[j] = x[(i-0)*dof+j]-slope[(i-0)*dof+j]*hxs/2;
700c4762a1bSJed Brown       }
7019566063dSJacob Faibussowitsch       PetscCall((*ctx->physics2.riemann2)(ctx->physics2.user,dof,uL,uR,ctx->flux,&maxspeed));
702c4762a1bSJed Brown       if (i > xs) {
703c4762a1bSJed Brown         for (j=0; j<dof; j++) f[(ifast-1)*dof+j] -= ctx->flux[j]/hxf;
704c4762a1bSJed Brown       }
705c4762a1bSJed Brown     }
706c4762a1bSJed Brown   }
7079566063dSJacob Faibussowitsch   PetscCall(DMDAVecRestoreArray(da,Xloc,&x));
7089566063dSJacob Faibussowitsch   PetscCall(VecRestoreArray(F,&f));
7099566063dSJacob Faibussowitsch   PetscCall(DMDARestoreArray(da,PETSC_TRUE,&slope));
7109566063dSJacob Faibussowitsch   PetscCall(DMRestoreLocalVector(da,&Xloc));
711c4762a1bSJed Brown   PetscFunctionReturn(0);
712c4762a1bSJed Brown }
713c4762a1bSJed Brown 
714c4762a1bSJed Brown int main(int argc,char *argv[])
715c4762a1bSJed Brown {
716c4762a1bSJed Brown   char              lname[256] = "mc",physname[256] = "advect",final_fname[256] = "solution.m";
717c4762a1bSJed Brown   PetscFunctionList limiters   = 0,physics = 0;
718c4762a1bSJed Brown   MPI_Comm          comm;
719c4762a1bSJed Brown   TS                ts;
720c4762a1bSJed Brown   DM                da;
721c4762a1bSJed Brown   Vec               X,X0,R;
722c4762a1bSJed Brown   FVCtx             ctx;
723c4762a1bSJed Brown   PetscInt          i,k,dof,xs,xm,Mx,draw = 0,count_slow,count_fast,islow = 0,ifast =0,islowbuffer = 0,*index_slow,*index_fast,*index_slowbuffer;
724c4762a1bSJed Brown   PetscBool         view_final = PETSC_FALSE;
725c4762a1bSJed Brown   PetscReal         ptime;
726c4762a1bSJed Brown 
727*327415f7SBarry Smith   PetscFunctionBeginUser;
7289566063dSJacob Faibussowitsch   PetscCall(PetscInitialize(&argc,&argv,0,help));
729c4762a1bSJed Brown   comm = PETSC_COMM_WORLD;
7309566063dSJacob Faibussowitsch   PetscCall(PetscMemzero(&ctx,sizeof(ctx)));
731c4762a1bSJed Brown 
732c4762a1bSJed Brown   /* Register limiters to be available on the command line */
7339566063dSJacob Faibussowitsch   PetscCall(PetscFunctionListAdd(&limiters,"upwind"              ,Limit2_Upwind));
7349566063dSJacob Faibussowitsch   PetscCall(PetscFunctionListAdd(&limiters,"lax-wendroff"        ,Limit2_LaxWendroff));
7359566063dSJacob Faibussowitsch   PetscCall(PetscFunctionListAdd(&limiters,"beam-warming"        ,Limit2_BeamWarming));
7369566063dSJacob Faibussowitsch   PetscCall(PetscFunctionListAdd(&limiters,"fromm"               ,Limit2_Fromm));
7379566063dSJacob Faibussowitsch   PetscCall(PetscFunctionListAdd(&limiters,"minmod"              ,Limit2_Minmod));
7389566063dSJacob Faibussowitsch   PetscCall(PetscFunctionListAdd(&limiters,"superbee"            ,Limit2_Superbee));
7399566063dSJacob Faibussowitsch   PetscCall(PetscFunctionListAdd(&limiters,"mc"                  ,Limit2_MC));
7409566063dSJacob Faibussowitsch   PetscCall(PetscFunctionListAdd(&limiters,"koren3"              ,Limit2_Koren3));
741c4762a1bSJed Brown 
742c4762a1bSJed Brown   /* Register physical models to be available on the command line */
7439566063dSJacob Faibussowitsch   PetscCall(PetscFunctionListAdd(&physics,"advect"          ,PhysicsCreate_Advect));
744c4762a1bSJed Brown 
745c4762a1bSJed Brown   ctx.comm = comm;
746c4762a1bSJed Brown   ctx.cfl  = 0.9;
747c4762a1bSJed Brown   ctx.bctype = FVBC_PERIODIC;
748c4762a1bSJed Brown   ctx.xmin = -1.0;
749c4762a1bSJed Brown   ctx.xmax = 1.0;
750d0609cedSBarry Smith   PetscOptionsBegin(comm,NULL,"Finite Volume solver options","");
7519566063dSJacob Faibussowitsch   PetscCall(PetscOptionsReal("-xmin","X min","",ctx.xmin,&ctx.xmin,NULL));
7529566063dSJacob Faibussowitsch   PetscCall(PetscOptionsReal("-xmax","X max","",ctx.xmax,&ctx.xmax,NULL));
7539566063dSJacob Faibussowitsch   PetscCall(PetscOptionsFList("-limit","Name of flux imiter to use","",limiters,lname,lname,sizeof(lname),NULL));
7549566063dSJacob Faibussowitsch   PetscCall(PetscOptionsInt("-draw","Draw solution vector, bitwise OR of (1=initial,2=final,4=final error)","",draw,&draw,NULL));
7559566063dSJacob Faibussowitsch   PetscCall(PetscOptionsString("-view_final","Write final solution in ASCII MATLAB format to given file name","",final_fname,final_fname,sizeof(final_fname),&view_final));
7569566063dSJacob Faibussowitsch   PetscCall(PetscOptionsInt("-initial","Initial condition (depends on the physics)","",ctx.initial,&ctx.initial,NULL));
7579566063dSJacob Faibussowitsch   PetscCall(PetscOptionsBool("-exact","Compare errors with exact solution","",ctx.exact,&ctx.exact,NULL));
7589566063dSJacob Faibussowitsch   PetscCall(PetscOptionsBool("-simulation","Compare errors with reference solution","",ctx.simulation,&ctx.simulation,NULL));
7599566063dSJacob Faibussowitsch   PetscCall(PetscOptionsReal("-cfl","CFL number to time step at","",ctx.cfl,&ctx.cfl,NULL));
7609566063dSJacob Faibussowitsch   PetscCall(PetscOptionsEnum("-bc_type","Boundary condition","",FVBCTypes,(PetscEnum)ctx.bctype,(PetscEnum*)&ctx.bctype,NULL));
7619566063dSJacob Faibussowitsch   PetscCall(PetscOptionsInt("-hratio","Spacing ratio","",ctx.hratio,&ctx.hratio,NULL));
762d0609cedSBarry Smith   PetscOptionsEnd();
763c4762a1bSJed Brown 
764c4762a1bSJed Brown   /* Choose the limiter from the list of registered limiters */
7659566063dSJacob Faibussowitsch   PetscCall(PetscFunctionListFind(limiters,lname,&ctx.limit2));
7663c633725SBarry Smith   PetscCheck(ctx.limit2,PETSC_COMM_SELF,PETSC_ERR_ARG_UNKNOWN_TYPE,"Limiter '%s' not found",lname);
767c4762a1bSJed Brown 
768c4762a1bSJed Brown   /* Choose the physics from the list of registered models */
769c4762a1bSJed Brown   {
770c4762a1bSJed Brown     PetscErrorCode (*r)(FVCtx*);
7719566063dSJacob Faibussowitsch     PetscCall(PetscFunctionListFind(physics,physname,&r));
7723c633725SBarry Smith     PetscCheck(r,PETSC_COMM_SELF,PETSC_ERR_ARG_UNKNOWN_TYPE,"Physics '%s' not found",physname);
773c4762a1bSJed Brown     /* Create the physics, will set the number of fields and their names */
7749566063dSJacob Faibussowitsch     PetscCall((*r)(&ctx));
775c4762a1bSJed Brown   }
776c4762a1bSJed Brown 
777c4762a1bSJed Brown   /* Create a DMDA to manage the parallel grid */
7789566063dSJacob Faibussowitsch   PetscCall(DMDACreate1d(comm,DM_BOUNDARY_PERIODIC,50,ctx.physics2.dof,2,NULL,&da));
7799566063dSJacob Faibussowitsch   PetscCall(DMSetFromOptions(da));
7809566063dSJacob Faibussowitsch   PetscCall(DMSetUp(da));
781c4762a1bSJed Brown   /* Inform the DMDA of the field names provided by the physics. */
782c4762a1bSJed Brown   /* The names will be shown in the title bars when run with -ts_monitor_draw_solution */
783c4762a1bSJed Brown   for (i=0; i<ctx.physics2.dof; i++) {
7849566063dSJacob Faibussowitsch     PetscCall(DMDASetFieldName(da,i,ctx.physics2.fieldname[i]));
785c4762a1bSJed Brown   }
7869566063dSJacob Faibussowitsch   PetscCall(DMDAGetInfo(da,0, &Mx,0,0, 0,0,0, &dof,0,0,0,0,0));
7879566063dSJacob Faibussowitsch   PetscCall(DMDAGetCorners(da,&xs,0,0,&xm,0,0));
788c4762a1bSJed Brown 
789c4762a1bSJed Brown   /* Set coordinates of cell centers */
7909566063dSJacob Faibussowitsch   PetscCall(DMDASetUniformCoordinates(da,ctx.xmin+0.5*(ctx.xmax-ctx.xmin)/Mx,ctx.xmax+0.5*(ctx.xmax-ctx.xmin)/Mx,0,0,0,0));
791c4762a1bSJed Brown 
792c4762a1bSJed Brown   /* Allocate work space for the Finite Volume solver (so it doesn't have to be reallocated on each function evaluation) */
7939566063dSJacob Faibussowitsch   PetscCall(PetscMalloc4(dof*dof,&ctx.R,dof*dof,&ctx.Rinv,2*dof,&ctx.cjmpLR,1*dof,&ctx.cslope));
7949566063dSJacob Faibussowitsch   PetscCall(PetscMalloc3(2*dof,&ctx.uLR,dof,&ctx.flux,dof,&ctx.speeds));
795c4762a1bSJed Brown 
796c4762a1bSJed Brown   /* Create a vector to store the solution and to save the initial state */
7979566063dSJacob Faibussowitsch   PetscCall(DMCreateGlobalVector(da,&X));
7989566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(X,&X0));
7999566063dSJacob Faibussowitsch   PetscCall(VecDuplicate(X,&R));
800c4762a1bSJed Brown 
801c4762a1bSJed Brown   /* create index for slow parts and fast parts,
802c4762a1bSJed Brown      count_slow + count_fast = Mx, counts_slow*hs = 0.5, counts_fast*hf = 0.5 */
803c4762a1bSJed Brown   count_slow = Mx/(1.0+ctx.hratio/3.0);
80408401ef6SPierre Jolivet   PetscCheck(count_slow%2 == 0,PETSC_COMM_WORLD,PETSC_ERR_USER,"Please adjust grid size Mx (-da_grid_x) and hratio (-hratio) so that Mx/(1+hartio/3) is even");
805c4762a1bSJed Brown   count_fast = Mx-count_slow;
806c4762a1bSJed Brown   ctx.sf = count_slow/2;
807c4762a1bSJed Brown   ctx.fs = ctx.sf+count_fast;
8089566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(xm*dof,&index_slow));
8099566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(xm*dof,&index_fast));
8109566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(6*dof,&index_slowbuffer));
811c4762a1bSJed Brown   if (((AdvectCtx*)ctx.physics2.user)->a > 0) {
812c4762a1bSJed Brown     ctx.lsbwidth = 2;
813c4762a1bSJed Brown     ctx.rsbwidth = 4;
814c4762a1bSJed Brown   } else {
815c4762a1bSJed Brown     ctx.lsbwidth = 4;
816c4762a1bSJed Brown     ctx.rsbwidth = 2;
817c4762a1bSJed Brown   }
818c4762a1bSJed Brown   for (i=xs; i<xs+xm; i++) {
819c4762a1bSJed Brown     if (i < ctx.sf-ctx.lsbwidth || i > ctx.fs+ctx.rsbwidth-1)
820c4762a1bSJed Brown       for (k=0; k<dof; k++) index_slow[islow++] = i*dof+k;
821c4762a1bSJed Brown     else if ((i >= ctx.sf-ctx.lsbwidth && i < ctx.sf) || (i > ctx.fs-1 && i <= ctx.fs+ctx.rsbwidth-1))
822c4762a1bSJed Brown       for (k=0; k<dof; k++) index_slowbuffer[islowbuffer++] = i*dof+k;
823c4762a1bSJed Brown     else
824c4762a1bSJed Brown       for (k=0; k<dof; k++) index_fast[ifast++] = i*dof+k;
825c4762a1bSJed Brown   }
8269566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PETSC_COMM_WORLD,islow,index_slow,PETSC_COPY_VALUES,&ctx.iss));
8279566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PETSC_COMM_WORLD,ifast,index_fast,PETSC_COPY_VALUES,&ctx.isf));
8289566063dSJacob Faibussowitsch   PetscCall(ISCreateGeneral(PETSC_COMM_WORLD,islowbuffer,index_slowbuffer,PETSC_COPY_VALUES,&ctx.issb));
829c4762a1bSJed Brown 
830c4762a1bSJed Brown   /* Create a time-stepping object */
8319566063dSJacob Faibussowitsch   PetscCall(TSCreate(comm,&ts));
8329566063dSJacob Faibussowitsch   PetscCall(TSSetDM(ts,da));
8339566063dSJacob Faibussowitsch   PetscCall(TSSetRHSFunction(ts,R,FVRHSFunction_2WaySplit,&ctx));
8349566063dSJacob Faibussowitsch   PetscCall(TSRHSSplitSetIS(ts,"slow",ctx.iss));
8359566063dSJacob Faibussowitsch   PetscCall(TSRHSSplitSetIS(ts,"slowbuffer",ctx.issb));
8369566063dSJacob Faibussowitsch   PetscCall(TSRHSSplitSetIS(ts,"fast",ctx.isf));
8379566063dSJacob Faibussowitsch   PetscCall(TSRHSSplitSetRHSFunction(ts,"slow",NULL,FVRHSFunctionslow_2WaySplit,&ctx));
8389566063dSJacob Faibussowitsch   PetscCall(TSRHSSplitSetRHSFunction(ts,"fast",NULL,FVRHSFunctionfast_2WaySplit,&ctx));
8399566063dSJacob Faibussowitsch   PetscCall(TSRHSSplitSetRHSFunction(ts,"slowbuffer",NULL,FVRHSFunctionslowbuffer_2WaySplit,&ctx));
840c4762a1bSJed Brown 
8419566063dSJacob Faibussowitsch   PetscCall(TSSetType(ts,TSSSP));
8429566063dSJacob Faibussowitsch   /*PetscCall(TSSetType(ts,TSMPRK));*/
8439566063dSJacob Faibussowitsch   PetscCall(TSSetMaxTime(ts,10));
8449566063dSJacob Faibussowitsch   PetscCall(TSSetExactFinalTime(ts,TS_EXACTFINALTIME_STEPOVER));
845c4762a1bSJed Brown 
846c4762a1bSJed Brown   /* Compute initial conditions and starting time step */
8479566063dSJacob Faibussowitsch   PetscCall(FVSample_2WaySplit(&ctx,da,0,X0));
8489566063dSJacob Faibussowitsch   PetscCall(FVRHSFunction_2WaySplit(ts,0,X0,X,(void*)&ctx)); /* Initial function evaluation, only used to determine max speed */
8499566063dSJacob Faibussowitsch   PetscCall(VecCopy(X0,X));                        /* The function value was not used so we set X=X0 again */
8509566063dSJacob Faibussowitsch   PetscCall(TSSetTimeStep(ts,ctx.cfl/ctx.cfl_idt));
8519566063dSJacob Faibussowitsch   PetscCall(TSSetFromOptions(ts)); /* Take runtime options */
8529566063dSJacob Faibussowitsch   PetscCall(SolutionStatsView(da,X,PETSC_VIEWER_STDOUT_WORLD));
853c4762a1bSJed Brown   {
854c4762a1bSJed Brown     PetscInt          steps;
855c4762a1bSJed Brown     PetscScalar       mass_initial,mass_final,mass_difference,mass_differenceg;
856c4762a1bSJed Brown     const PetscScalar *ptr_X,*ptr_X0;
857c4762a1bSJed Brown     const PetscReal   hs = (ctx.xmax-ctx.xmin)*3.0/4.0/count_slow;
858c4762a1bSJed Brown     const PetscReal   hf = (ctx.xmax-ctx.xmin)/4.0/count_fast;
859c4762a1bSJed Brown 
8609566063dSJacob Faibussowitsch     PetscCall(TSSolve(ts,X));
8619566063dSJacob Faibussowitsch     PetscCall(TSGetSolveTime(ts,&ptime));
8629566063dSJacob Faibussowitsch     PetscCall(TSGetStepNumber(ts,&steps));
863c4762a1bSJed Brown     /* calculate the total mass at initial time and final time */
864c4762a1bSJed Brown     mass_initial = 0.0;
865c4762a1bSJed Brown     mass_final   = 0.0;
8669566063dSJacob Faibussowitsch     PetscCall(DMDAVecGetArrayRead(da,X0,(void*)&ptr_X0));
8679566063dSJacob Faibussowitsch     PetscCall(DMDAVecGetArrayRead(da,X,(void*)&ptr_X));
868c4762a1bSJed Brown     for (i=xs;i<xs+xm;i++) {
869c4762a1bSJed Brown       if (i < ctx.sf || i > ctx.fs-1) {
870c4762a1bSJed Brown         for (k=0; k<dof; k++) {
871c4762a1bSJed Brown           mass_initial = mass_initial + hs*ptr_X0[i*dof+k];
872c4762a1bSJed Brown           mass_final = mass_final + hs*ptr_X[i*dof+k];
873c4762a1bSJed Brown         }
874c4762a1bSJed Brown       } else {
875c4762a1bSJed Brown         for (k=0; k<dof; k++) {
876c4762a1bSJed Brown           mass_initial = mass_initial + hf*ptr_X0[i*dof+k];
877c4762a1bSJed Brown           mass_final = mass_final + hf*ptr_X[i*dof+k];
878c4762a1bSJed Brown         }
879c4762a1bSJed Brown       }
880c4762a1bSJed Brown     }
8819566063dSJacob Faibussowitsch     PetscCall(DMDAVecRestoreArrayRead(da,X0,(void*)&ptr_X0));
8829566063dSJacob Faibussowitsch     PetscCall(DMDAVecRestoreArrayRead(da,X,(void*)&ptr_X));
883c4762a1bSJed Brown     mass_difference = mass_final - mass_initial;
8849566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Allreduce(&mass_difference,&mass_differenceg,1,MPIU_SCALAR,MPIU_SUM,comm));
8859566063dSJacob Faibussowitsch     PetscCall(PetscPrintf(comm,"Mass difference %g\n",(double)mass_differenceg));
88663a3b9bcSJacob Faibussowitsch     PetscCall(PetscPrintf(comm,"Final time %g, steps %" PetscInt_FMT "\n",(double)ptime,steps));
8879566063dSJacob Faibussowitsch     PetscCall(PetscPrintf(comm,"Maximum allowable stepsize according to CFL %g\n",(double)(1.0/ctx.cfl_idt)));
888c4762a1bSJed Brown     if (ctx.exact) {
889c4762a1bSJed Brown       PetscReal nrm1=0;
8909566063dSJacob Faibussowitsch       PetscCall(SolutionErrorNorms_2WaySplit(&ctx,da,ptime,X,&nrm1));
8919566063dSJacob Faibussowitsch       PetscCall(PetscPrintf(comm,"Error ||x-x_e||_1 %g\n",(double)nrm1));
892c4762a1bSJed Brown     }
893c4762a1bSJed Brown     if (ctx.simulation) {
894c4762a1bSJed Brown       PetscReal    nrm1=0;
895c4762a1bSJed Brown       PetscViewer  fd;
896c4762a1bSJed Brown       char         filename[PETSC_MAX_PATH_LEN] = "binaryoutput";
897c4762a1bSJed Brown       Vec          XR;
898c4762a1bSJed Brown       PetscBool    flg;
899c4762a1bSJed Brown       const PetscScalar  *ptr_XR;
9009566063dSJacob Faibussowitsch       PetscCall(PetscOptionsGetString(NULL,NULL,"-f",filename,sizeof(filename),&flg));
9013c633725SBarry Smith       PetscCheck(flg,PETSC_COMM_WORLD,PETSC_ERR_USER,"Must indicate binary file with the -f option");
9029566063dSJacob Faibussowitsch       PetscCall(PetscViewerBinaryOpen(PETSC_COMM_WORLD,filename,FILE_MODE_READ,&fd));
9039566063dSJacob Faibussowitsch       PetscCall(VecDuplicate(X0,&XR));
9049566063dSJacob Faibussowitsch       PetscCall(VecLoad(XR,fd));
9059566063dSJacob Faibussowitsch       PetscCall(PetscViewerDestroy(&fd));
9069566063dSJacob Faibussowitsch       PetscCall(VecGetArrayRead(X,&ptr_X));
9079566063dSJacob Faibussowitsch       PetscCall(VecGetArrayRead(XR,&ptr_XR));
908c4762a1bSJed Brown       for (i=xs;i<xs+xm;i++) {
909c4762a1bSJed Brown         if (i < ctx.sf || i > ctx.fs-1)
910c4762a1bSJed Brown           for (k=0; k<dof; k++) nrm1 = nrm1 + hs*PetscAbs(ptr_X[i*dof+k]-ptr_XR[i*dof+k]);
911c4762a1bSJed Brown         else
912c4762a1bSJed Brown           for (k=0; k<dof; k++) nrm1 = nrm1 + hf*PetscAbs(ptr_X[i*dof+k]-ptr_XR[i*dof+k]);
913c4762a1bSJed Brown       }
9149566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayRead(X,&ptr_X));
9159566063dSJacob Faibussowitsch       PetscCall(VecRestoreArrayRead(XR,&ptr_XR));
9169566063dSJacob Faibussowitsch       PetscCall(PetscPrintf(comm,"Error ||x-x_e||_1 %g\n",(double)nrm1));
9179566063dSJacob Faibussowitsch       PetscCall(VecDestroy(&XR));
918c4762a1bSJed Brown     }
919c4762a1bSJed Brown   }
920c4762a1bSJed Brown 
9219566063dSJacob Faibussowitsch   PetscCall(SolutionStatsView(da,X,PETSC_VIEWER_STDOUT_WORLD));
9229566063dSJacob Faibussowitsch   if (draw & 0x1) PetscCall(VecView(X0,PETSC_VIEWER_DRAW_WORLD));
9239566063dSJacob Faibussowitsch   if (draw & 0x2) PetscCall(VecView(X,PETSC_VIEWER_DRAW_WORLD));
924c4762a1bSJed Brown   if (draw & 0x4) {
925c4762a1bSJed Brown     Vec Y;
9269566063dSJacob Faibussowitsch     PetscCall(VecDuplicate(X,&Y));
9279566063dSJacob Faibussowitsch     PetscCall(FVSample_2WaySplit(&ctx,da,ptime,Y));
9289566063dSJacob Faibussowitsch     PetscCall(VecAYPX(Y,-1,X));
9299566063dSJacob Faibussowitsch     PetscCall(VecView(Y,PETSC_VIEWER_DRAW_WORLD));
9309566063dSJacob Faibussowitsch     PetscCall(VecDestroy(&Y));
931c4762a1bSJed Brown   }
932c4762a1bSJed Brown 
933c4762a1bSJed Brown   if (view_final) {
934c4762a1bSJed Brown     PetscViewer viewer;
9359566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIOpen(PETSC_COMM_WORLD,final_fname,&viewer));
9369566063dSJacob Faibussowitsch     PetscCall(PetscViewerPushFormat(viewer,PETSC_VIEWER_ASCII_MATLAB));
9379566063dSJacob Faibussowitsch     PetscCall(VecView(X,viewer));
9389566063dSJacob Faibussowitsch     PetscCall(PetscViewerPopFormat(viewer));
9399566063dSJacob Faibussowitsch     PetscCall(PetscViewerDestroy(&viewer));
940c4762a1bSJed Brown   }
941c4762a1bSJed Brown 
942c4762a1bSJed Brown   /* Clean up */
9439566063dSJacob Faibussowitsch   PetscCall((*ctx.physics2.destroy)(ctx.physics2.user));
9449566063dSJacob Faibussowitsch   for (i=0; i<ctx.physics2.dof; i++) PetscCall(PetscFree(ctx.physics2.fieldname[i]));
9459566063dSJacob Faibussowitsch   PetscCall(PetscFree4(ctx.R,ctx.Rinv,ctx.cjmpLR,ctx.cslope));
9469566063dSJacob Faibussowitsch   PetscCall(PetscFree3(ctx.uLR,ctx.flux,ctx.speeds));
9479566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&X));
9489566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&X0));
9499566063dSJacob Faibussowitsch   PetscCall(VecDestroy(&R));
9509566063dSJacob Faibussowitsch   PetscCall(DMDestroy(&da));
9519566063dSJacob Faibussowitsch   PetscCall(TSDestroy(&ts));
9529566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&ctx.iss));
9539566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&ctx.isf));
9549566063dSJacob Faibussowitsch   PetscCall(ISDestroy(&ctx.issb));
9559566063dSJacob Faibussowitsch   PetscCall(PetscFree(index_slow));
9569566063dSJacob Faibussowitsch   PetscCall(PetscFree(index_fast));
9579566063dSJacob Faibussowitsch   PetscCall(PetscFree(index_slowbuffer));
9589566063dSJacob Faibussowitsch   PetscCall(PetscFunctionListDestroy(&limiters));
9599566063dSJacob Faibussowitsch   PetscCall(PetscFunctionListDestroy(&physics));
9609566063dSJacob Faibussowitsch   PetscCall(PetscFinalize());
961b122ec5aSJacob Faibussowitsch   return 0;
962c4762a1bSJed Brown }
963c4762a1bSJed Brown 
964c4762a1bSJed Brown /*TEST
965c4762a1bSJed Brown 
966c4762a1bSJed Brown     build:
967f56ea12dSJed Brown       requires: !complex
968c4762a1bSJed Brown       depends: finitevolume1d.c
969c4762a1bSJed Brown 
970c4762a1bSJed Brown     test:
971c4762a1bSJed Brown       suffix: 1
972c4762a1bSJed Brown       args: -da_grid_x 60 -initial 7 -xmin -1 -xmax 1 -hratio 2 -limit mc -ts_dt 0.025 -ts_max_steps 24 -ts_type mprk -ts_mprk_type 2a22
973c4762a1bSJed Brown 
974c4762a1bSJed Brown     test:
975c4762a1bSJed Brown       suffix: 2
976c4762a1bSJed Brown       args: -da_grid_x 60 -initial 7 -xmin -1 -xmax 1 -hratio 2 -limit mc -ts_dt 0.025 -ts_max_steps 24 -ts_type mprk -ts_mprk_type 2a22 -ts_use_splitrhsfunction 0
977c4762a1bSJed Brown       output_file: output/ex6_1.out
978c4762a1bSJed Brown 
979c4762a1bSJed Brown TEST*/
980