xref: /petsc/src/ts/tutorials/power_grid/ex6.c (revision 5f80ce2ab25dff0f4601e710601cbbcecf323266)
1c4762a1bSJed Brown static char help[] = "Time-dependent PDE in 2d for calculating joint PDF. \n";
2c4762a1bSJed Brown /*
3c4762a1bSJed Brown    p_t = -x_t*p_x -y_t*p_y + f(t)*p_yy
4c4762a1bSJed Brown    xmin < x < xmax, ymin < y < ymax;
5c4762a1bSJed Brown    x_t = (y - ws)  y_t = (ws/2H)*(Pm - Pmax*sin(x))
6c4762a1bSJed Brown 
7c4762a1bSJed Brown    Boundary conditions: -bc_type 0 => Zero dirichlet boundary
8c4762a1bSJed Brown                         -bc_type 1 => Steady state boundary condition
9c4762a1bSJed Brown    Steady state boundary condition found by setting p_t = 0
10c4762a1bSJed Brown */
11c4762a1bSJed Brown 
12c4762a1bSJed Brown #include <petscdm.h>
13c4762a1bSJed Brown #include <petscdmda.h>
14c4762a1bSJed Brown #include <petscts.h>
15c4762a1bSJed Brown 
16c4762a1bSJed Brown /*
17c4762a1bSJed Brown    User-defined data structures and routines
18c4762a1bSJed Brown */
19c4762a1bSJed Brown typedef struct {
20c4762a1bSJed Brown   PetscScalar ws;   /* Synchronous speed */
21c4762a1bSJed Brown   PetscScalar H;    /* Inertia constant */
22c4762a1bSJed Brown   PetscScalar D;    /* Damping constant */
23c4762a1bSJed Brown   PetscScalar Pmax; /* Maximum power output of generator */
24c4762a1bSJed Brown   PetscScalar PM_min; /* Mean mechanical power input */
25c4762a1bSJed Brown   PetscScalar lambda; /* correlation time */
26c4762a1bSJed Brown   PetscScalar q;      /* noise strength */
27c4762a1bSJed Brown   PetscScalar mux;    /* Initial average angle */
28c4762a1bSJed Brown   PetscScalar sigmax; /* Standard deviation of initial angle */
29c4762a1bSJed Brown   PetscScalar muy;    /* Average speed */
30c4762a1bSJed Brown   PetscScalar sigmay; /* standard deviation of initial speed */
31c4762a1bSJed Brown   PetscScalar rho;    /* Cross-correlation coefficient */
32c4762a1bSJed Brown   PetscScalar t0;     /* Initial time */
33c4762a1bSJed Brown   PetscScalar tmax;   /* Final time */
34c4762a1bSJed Brown   PetscScalar xmin;   /* left boundary of angle */
35c4762a1bSJed Brown   PetscScalar xmax;   /* right boundary of angle */
36c4762a1bSJed Brown   PetscScalar ymin;   /* bottom boundary of speed */
37c4762a1bSJed Brown   PetscScalar ymax;   /* top boundary of speed */
38c4762a1bSJed Brown   PetscScalar dx;     /* x step size */
39c4762a1bSJed Brown   PetscScalar dy;     /* y step size */
40c4762a1bSJed Brown   PetscInt    bc; /* Boundary conditions */
41c4762a1bSJed Brown   PetscScalar disper_coe; /* Dispersion coefficient */
42c4762a1bSJed Brown   DM          da;
43c4762a1bSJed Brown } AppCtx;
44c4762a1bSJed Brown 
45c4762a1bSJed Brown PetscErrorCode Parameter_settings(AppCtx*);
46c4762a1bSJed Brown PetscErrorCode ini_bou(Vec,AppCtx*);
47c4762a1bSJed Brown PetscErrorCode IFunction(TS,PetscReal,Vec,Vec,Vec,void*);
48c4762a1bSJed Brown PetscErrorCode IJacobian(TS,PetscReal,Vec,Vec,PetscReal,Mat,Mat,void*);
49c4762a1bSJed Brown PetscErrorCode PostStep(TS);
50c4762a1bSJed Brown 
51c4762a1bSJed Brown int main(int argc, char **argv)
52c4762a1bSJed Brown {
53c4762a1bSJed Brown   PetscErrorCode ierr;
54c4762a1bSJed Brown   Vec            x;  /* Solution vector */
55c4762a1bSJed Brown   TS             ts;   /* Time-stepping context */
56c4762a1bSJed Brown   AppCtx         user; /* Application context */
57c4762a1bSJed Brown   Mat            J;
58c4762a1bSJed Brown   PetscViewer    viewer;
59c4762a1bSJed Brown 
60c4762a1bSJed Brown   ierr = PetscInitialize(&argc,&argv,"petscopt_ex6", help);if (ierr) return ierr;
61c4762a1bSJed Brown   /* Get physics and time parameters */
62*5f80ce2aSJacob Faibussowitsch   CHKERRQ(Parameter_settings(&user));
63c4762a1bSJed Brown   /* Create a 2D DA with dof = 1 */
64*5f80ce2aSJacob Faibussowitsch   CHKERRQ(DMDACreate2d(PETSC_COMM_WORLD,DM_BOUNDARY_NONE,DM_BOUNDARY_NONE,DMDA_STENCIL_STAR,4,4,PETSC_DECIDE,PETSC_DECIDE,1,1,NULL,NULL,&user.da));
65*5f80ce2aSJacob Faibussowitsch   CHKERRQ(DMSetFromOptions(user.da));
66*5f80ce2aSJacob Faibussowitsch   CHKERRQ(DMSetUp(user.da));
67c4762a1bSJed Brown   /* Set x and y coordinates */
68*5f80ce2aSJacob Faibussowitsch   CHKERRQ(DMDASetUniformCoordinates(user.da,user.xmin,user.xmax,user.ymin,user.ymax,0.0,1.0));
69c4762a1bSJed Brown 
70c4762a1bSJed Brown   /* Get global vector x from DM  */
71*5f80ce2aSJacob Faibussowitsch   CHKERRQ(DMCreateGlobalVector(user.da,&x));
72c4762a1bSJed Brown 
73*5f80ce2aSJacob Faibussowitsch   CHKERRQ(ini_bou(x,&user));
74*5f80ce2aSJacob Faibussowitsch   CHKERRQ(PetscViewerBinaryOpen(PETSC_COMM_WORLD,"ini_x",FILE_MODE_WRITE,&viewer));
75*5f80ce2aSJacob Faibussowitsch   CHKERRQ(VecView(x,viewer));
76*5f80ce2aSJacob Faibussowitsch   CHKERRQ(PetscViewerDestroy(&viewer));
77c4762a1bSJed Brown 
78c4762a1bSJed Brown   /* Get Jacobian matrix structure from the da */
79*5f80ce2aSJacob Faibussowitsch   CHKERRQ(DMSetMatType(user.da,MATAIJ));
80*5f80ce2aSJacob Faibussowitsch   CHKERRQ(DMCreateMatrix(user.da,&J));
81c4762a1bSJed Brown 
82*5f80ce2aSJacob Faibussowitsch   CHKERRQ(TSCreate(PETSC_COMM_WORLD,&ts));
83*5f80ce2aSJacob Faibussowitsch   CHKERRQ(TSSetProblemType(ts,TS_NONLINEAR));
84*5f80ce2aSJacob Faibussowitsch   CHKERRQ(TSSetIFunction(ts,NULL,IFunction,&user));
85*5f80ce2aSJacob Faibussowitsch   CHKERRQ(TSSetIJacobian(ts,J,J,IJacobian,&user));
86*5f80ce2aSJacob Faibussowitsch   CHKERRQ(TSSetApplicationContext(ts,&user));
87*5f80ce2aSJacob Faibussowitsch   CHKERRQ(TSSetMaxTime(ts,user.tmax));
88*5f80ce2aSJacob Faibussowitsch   CHKERRQ(TSSetExactFinalTime(ts,TS_EXACTFINALTIME_MATCHSTEP));
89*5f80ce2aSJacob Faibussowitsch   CHKERRQ(TSSetTime(ts,user.t0));
90*5f80ce2aSJacob Faibussowitsch   CHKERRQ(TSSetTimeStep(ts,.005));
91*5f80ce2aSJacob Faibussowitsch   CHKERRQ(TSSetFromOptions(ts));
92*5f80ce2aSJacob Faibussowitsch   CHKERRQ(TSSetPostStep(ts,PostStep));
93*5f80ce2aSJacob Faibussowitsch   CHKERRQ(TSSolve(ts,x));
94c4762a1bSJed Brown 
95*5f80ce2aSJacob Faibussowitsch   CHKERRQ(PetscViewerBinaryOpen(PETSC_COMM_WORLD,"fin_x",FILE_MODE_WRITE,&viewer));
96*5f80ce2aSJacob Faibussowitsch   CHKERRQ(VecView(x,viewer));
97*5f80ce2aSJacob Faibussowitsch   CHKERRQ(PetscViewerDestroy(&viewer));
98c4762a1bSJed Brown 
99*5f80ce2aSJacob Faibussowitsch   CHKERRQ(VecDestroy(&x));
100*5f80ce2aSJacob Faibussowitsch   CHKERRQ(MatDestroy(&J));
101*5f80ce2aSJacob Faibussowitsch   CHKERRQ(DMDestroy(&user.da));
102*5f80ce2aSJacob Faibussowitsch   CHKERRQ(TSDestroy(&ts));
103c4762a1bSJed Brown   ierr = PetscFinalize();
104c4762a1bSJed Brown   return ierr;
105c4762a1bSJed Brown }
106c4762a1bSJed Brown 
107c4762a1bSJed Brown PetscErrorCode PostStep(TS ts)
108c4762a1bSJed Brown {
109c4762a1bSJed Brown   Vec            X;
110c4762a1bSJed Brown   AppCtx         *user;
111c4762a1bSJed Brown   PetscScalar    sum;
112c4762a1bSJed Brown   PetscReal      t;
113c4762a1bSJed Brown 
114c4762a1bSJed Brown   PetscFunctionBegin;
115*5f80ce2aSJacob Faibussowitsch   CHKERRQ(TSGetApplicationContext(ts,&user));
116*5f80ce2aSJacob Faibussowitsch   CHKERRQ(TSGetTime(ts,&t));
117*5f80ce2aSJacob Faibussowitsch   CHKERRQ(TSGetSolution(ts,&X));
118*5f80ce2aSJacob Faibussowitsch   CHKERRQ(VecSum(X,&sum));
119*5f80ce2aSJacob Faibussowitsch   CHKERRQ(PetscPrintf(PETSC_COMM_WORLD,"sum(p)*dw*dtheta at t = %3.2f = %3.6f\n",(double)t,(double)sum*user->dx*user->dy));
120c4762a1bSJed Brown   PetscFunctionReturn(0);
121c4762a1bSJed Brown }
122c4762a1bSJed Brown 
123c4762a1bSJed Brown PetscErrorCode ini_bou(Vec X,AppCtx* user)
124c4762a1bSJed Brown {
125c4762a1bSJed Brown   DM             cda;
126c4762a1bSJed Brown   DMDACoor2d     **coors;
127c4762a1bSJed Brown   PetscScalar    **p;
128c4762a1bSJed Brown   Vec            gc;
129c4762a1bSJed Brown   PetscInt       i,j;
130c4762a1bSJed Brown   PetscInt       xs,ys,xm,ym,M,N;
131c4762a1bSJed Brown   PetscScalar    xi,yi;
132c4762a1bSJed Brown   PetscScalar    sigmax=user->sigmax,sigmay=user->sigmay;
133c4762a1bSJed Brown   PetscScalar    rho   =user->rho;
134c4762a1bSJed Brown   PetscScalar    mux   =user->mux,muy=user->muy;
135c4762a1bSJed Brown   PetscMPIInt    rank;
136c4762a1bSJed Brown 
137c4762a1bSJed Brown   PetscFunctionBeginUser;
138*5f80ce2aSJacob Faibussowitsch   CHKERRMPI(MPI_Comm_rank(PETSC_COMM_WORLD,&rank));
139*5f80ce2aSJacob Faibussowitsch   CHKERRQ(DMDAGetInfo(user->da,NULL,&M,&N,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL));
140c4762a1bSJed Brown   user->dx = (user->xmax - user->xmin)/(M-1); user->dy = (user->ymax - user->ymin)/(N-1);
141*5f80ce2aSJacob Faibussowitsch   CHKERRQ(DMGetCoordinateDM(user->da,&cda));
142*5f80ce2aSJacob Faibussowitsch   CHKERRQ(DMGetCoordinates(user->da,&gc));
143*5f80ce2aSJacob Faibussowitsch   CHKERRQ(DMDAVecGetArray(cda,gc,&coors));
144*5f80ce2aSJacob Faibussowitsch   CHKERRQ(DMDAVecGetArray(user->da,X,&p));
145*5f80ce2aSJacob Faibussowitsch   CHKERRQ(DMDAGetCorners(cda,&xs,&ys,0,&xm,&ym,0));
146c4762a1bSJed Brown   for (i=xs; i < xs+xm; i++) {
147c4762a1bSJed Brown     for (j=ys; j < ys+ym; j++) {
148c4762a1bSJed Brown       xi = coors[j][i].x; yi = coors[j][i].y;
149c4762a1bSJed Brown       if (i == 0 || j == 0 || i == M-1 || j == N-1) p[j][i] = 0.0;
150c4762a1bSJed Brown       else p[j][i] = (0.5/(PETSC_PI*sigmax*sigmay*PetscSqrtScalar(1.0-rho*rho)))*PetscExpScalar(-0.5/(1-rho*rho)*(PetscPowScalar((xi-mux)/sigmax,2) + PetscPowScalar((yi-muy)/sigmay,2) - 2*rho*(xi-mux)*(yi-muy)/(sigmax*sigmay)));
151c4762a1bSJed Brown     }
152c4762a1bSJed Brown   }
153c4762a1bSJed Brown   /*  p[N/2+N%2][M/2+M%2] = 1/(user->dx*user->dy); */
154c4762a1bSJed Brown 
155*5f80ce2aSJacob Faibussowitsch   CHKERRQ(DMDAVecRestoreArray(cda,gc,&coors));
156*5f80ce2aSJacob Faibussowitsch   CHKERRQ(DMDAVecRestoreArray(user->da,X,&p));
157c4762a1bSJed Brown   PetscFunctionReturn(0);
158c4762a1bSJed Brown }
159c4762a1bSJed Brown 
160c4762a1bSJed Brown /* First advection term */
161c4762a1bSJed Brown PetscErrorCode adv1(PetscScalar **p,PetscScalar y,PetscInt i,PetscInt j,PetscInt M,PetscScalar *p1,AppCtx *user)
162c4762a1bSJed Brown {
163c4762a1bSJed Brown   PetscScalar f;
164c4762a1bSJed Brown   /*  PetscScalar v1,v2,v3,v4,v5,s1,s2,s3; */
165c4762a1bSJed Brown   PetscFunctionBegin;
166c4762a1bSJed Brown   /*  if (i > 2 && i < M-2) {
167c4762a1bSJed Brown     v1 = (y-user->ws)*(p[j][i-2] - p[j][i-3])/user->dx;
168c4762a1bSJed Brown     v2 = (y-user->ws)*(p[j][i-1] - p[j][i-2])/user->dx;
169c4762a1bSJed Brown     v3 = (y-user->ws)*(p[j][i] - p[j][i-1])/user->dx;
170c4762a1bSJed Brown     v4 = (y-user->ws)*(p[j][i+1] - p[j][i])/user->dx;
171c4762a1bSJed Brown     v5 = (y-user->ws)*(p[j][i+1] - p[j][i+2])/user->dx;
172c4762a1bSJed Brown 
173c4762a1bSJed Brown     s1 = v1/3.0 - (7.0/6.0)*v2 + (11.0/6.0)*v3;
174c4762a1bSJed Brown     s2 =-v2/6.0 + (5.0/6.0)*v3 + (1.0/3.0)*v4;
175c4762a1bSJed Brown     s3 = v3/3.0 + (5.0/6.0)*v4 - (1.0/6.0)*v5;
176c4762a1bSJed Brown 
177c4762a1bSJed Brown     *p1 = 0.1*s1 + 0.6*s2 + 0.3*s3;
178c4762a1bSJed Brown     } else *p1 = 0.0; */
179c4762a1bSJed Brown   f   =  (y - user->ws);
180c4762a1bSJed Brown   *p1 = f*(p[j][i+1] - p[j][i-1])/(2*user->dx);
181c4762a1bSJed Brown   PetscFunctionReturn(0);
182c4762a1bSJed Brown }
183c4762a1bSJed Brown 
184c4762a1bSJed Brown /* Second advection term */
185c4762a1bSJed Brown PetscErrorCode adv2(PetscScalar **p,PetscScalar x,PetscInt i,PetscInt j,PetscInt N,PetscScalar *p2,AppCtx *user)
186c4762a1bSJed Brown {
187c4762a1bSJed Brown   PetscScalar f;
188c4762a1bSJed Brown   /*  PetscScalar v1,v2,v3,v4,v5,s1,s2,s3; */
189c4762a1bSJed Brown   PetscFunctionBegin;
190c4762a1bSJed Brown   /*  if (j > 2 && j < N-2) {
191c4762a1bSJed Brown     v1 = (user->ws/(2*user->H))*(user->PM_min - user->Pmax*sin(x))*(p[j-2][i] - p[j-3][i])/user->dy;
192c4762a1bSJed Brown     v2 = (user->ws/(2*user->H))*(user->PM_min - user->Pmax*sin(x))*(p[j-1][i] - p[j-2][i])/user->dy;
193c4762a1bSJed Brown     v3 = (user->ws/(2*user->H))*(user->PM_min - user->Pmax*sin(x))*(p[j][i] - p[j-1][i])/user->dy;
194c4762a1bSJed Brown     v4 = (user->ws/(2*user->H))*(user->PM_min - user->Pmax*sin(x))*(p[j+1][i] - p[j][i])/user->dy;
195c4762a1bSJed Brown     v5 = (user->ws/(2*user->H))*(user->PM_min - user->Pmax*sin(x))*(p[j+2][i] - p[j+1][i])/user->dy;
196c4762a1bSJed Brown 
197c4762a1bSJed Brown     s1 = v1/3.0 - (7.0/6.0)*v2 + (11.0/6.0)*v3;
198c4762a1bSJed Brown     s2 =-v2/6.0 + (5.0/6.0)*v3 + (1.0/3.0)*v4;
199c4762a1bSJed Brown     s3 = v3/3.0 + (5.0/6.0)*v4 - (1.0/6.0)*v5;
200c4762a1bSJed Brown 
201c4762a1bSJed Brown     *p2 = 0.1*s1 + 0.6*s2 + 0.3*s3;
202c4762a1bSJed Brown     } else *p2 = 0.0; */
203c4762a1bSJed Brown   f   = (user->ws/(2*user->H))*(user->PM_min - user->Pmax*PetscSinScalar(x));
204c4762a1bSJed Brown   *p2 = f*(p[j+1][i] - p[j-1][i])/(2*user->dy);
205c4762a1bSJed Brown   PetscFunctionReturn(0);
206c4762a1bSJed Brown }
207c4762a1bSJed Brown 
208c4762a1bSJed Brown /* Diffusion term */
209c4762a1bSJed Brown PetscErrorCode diffuse(PetscScalar **p,PetscInt i,PetscInt j,PetscReal t,PetscScalar *p_diff,AppCtx * user)
210c4762a1bSJed Brown {
211c4762a1bSJed Brown   PetscFunctionBeginUser;
212c4762a1bSJed Brown 
213c4762a1bSJed Brown   *p_diff = user->disper_coe*((p[j-1][i] - 2*p[j][i] + p[j+1][i])/(user->dy*user->dy));
214c4762a1bSJed Brown   PetscFunctionReturn(0);
215c4762a1bSJed Brown }
216c4762a1bSJed Brown 
217c4762a1bSJed Brown PetscErrorCode BoundaryConditions(PetscScalar **p,DMDACoor2d **coors,PetscInt i,PetscInt j,PetscInt M, PetscInt N,PetscScalar **f,AppCtx *user)
218c4762a1bSJed Brown {
219c4762a1bSJed Brown   PetscScalar fwc,fthetac;
220c4762a1bSJed Brown   PetscScalar w=coors[j][i].y,theta=coors[j][i].x;
221c4762a1bSJed Brown 
222c4762a1bSJed Brown   PetscFunctionBeginUser;
223c4762a1bSJed Brown   if (user->bc == 0) { /* Natural boundary condition */
224c4762a1bSJed Brown     f[j][i] = p[j][i];
225c4762a1bSJed Brown   } else { /* Steady state boundary condition */
226c4762a1bSJed Brown     fthetac = user->ws/(2*user->H)*(user->PM_min - user->Pmax*PetscSinScalar(theta));
227c4762a1bSJed Brown     fwc = (w*w/2.0 - user->ws*w);
228c4762a1bSJed Brown     if (i == 0 && j == 0) { /* left bottom corner */
229c4762a1bSJed Brown       f[j][i] = fwc*(p[j][i+1] - p[j][i])/user->dx + fthetac*p[j][i] - user->disper_coe*(p[j+1][i] - p[j][i])/user->dy;
230c4762a1bSJed Brown     } else if (i == 0 && j == N-1) { /* right bottom corner */
231c4762a1bSJed Brown       f[j][i] = fwc*(p[j][i+1] - p[j][i])/user->dx + fthetac*p[j][i] - user->disper_coe*(p[j][i] - p[j-1][i])/user->dy;
232c4762a1bSJed Brown     } else if (i == M-1 && j == 0) { /* left top corner */
233c4762a1bSJed Brown       f[j][i] = fwc*(p[j][i] - p[j][i-1])/user->dx + fthetac*p[j][i] - user->disper_coe*(p[j+1][i] - p[j][i])/user->dy;
234c4762a1bSJed Brown     } else if (i == M-1 && j == N-1) { /* right top corner */
235c4762a1bSJed Brown       f[j][i] = fwc*(p[j][i] - p[j][i-1])/user->dx + fthetac*p[j][i] - user->disper_coe*(p[j][i] - p[j-1][i])/user->dy;
236c4762a1bSJed Brown     } else if (i == 0) { /* Bottom edge */
237c4762a1bSJed Brown       f[j][i] = fwc*(p[j][i+1] - p[j][i])/(user->dx) + fthetac*p[j][i] - user->disper_coe*(p[j+1][i] - p[j-1][i])/(2*user->dy);
238c4762a1bSJed Brown     } else if (i == M-1) { /* Top edge */
239c4762a1bSJed Brown       f[j][i] = fwc*(p[j][i] - p[j][i-1])/(user->dx) + fthetac*p[j][i] - user->disper_coe*(p[j+1][i] - p[j-1][i])/(2*user->dy);
240c4762a1bSJed Brown     } else if (j == 0) { /* Left edge */
241c4762a1bSJed Brown       f[j][i] = fwc*(p[j][i+1] - p[j][i-1])/(2*user->dx) + fthetac*p[j][i] - user->disper_coe*(p[j+1][i] - p[j][i])/(user->dy);
242c4762a1bSJed Brown     } else if (j == N-1) { /* Right edge */
243c4762a1bSJed Brown       f[j][i] = fwc*(p[j][i+1] - p[j][i-1])/(2*user->dx) + fthetac*p[j][i] - user->disper_coe*(p[j][i] - p[j-1][i])/(user->dy);
244c4762a1bSJed Brown     }
245c4762a1bSJed Brown   }
246c4762a1bSJed Brown   PetscFunctionReturn(0);
247c4762a1bSJed Brown }
248c4762a1bSJed Brown 
249c4762a1bSJed Brown PetscErrorCode IFunction(TS ts,PetscReal t,Vec X,Vec Xdot,Vec F,void *ctx)
250c4762a1bSJed Brown {
251c4762a1bSJed Brown   AppCtx         *user=(AppCtx*)ctx;
252c4762a1bSJed Brown   DM             cda;
253c4762a1bSJed Brown   DMDACoor2d     **coors;
254c4762a1bSJed Brown   PetscScalar    **p,**f,**pdot;
255c4762a1bSJed Brown   PetscInt       i,j;
256c4762a1bSJed Brown   PetscInt       xs,ys,xm,ym,M,N;
257c4762a1bSJed Brown   Vec            localX,gc,localXdot;
258c4762a1bSJed Brown   PetscScalar    p_adv1,p_adv2,p_diff;
259c4762a1bSJed Brown 
260c4762a1bSJed Brown   PetscFunctionBeginUser;
261*5f80ce2aSJacob Faibussowitsch   CHKERRQ(DMDAGetInfo(user->da,NULL,&M,&N,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL));
262*5f80ce2aSJacob Faibussowitsch   CHKERRQ(DMGetCoordinateDM(user->da,&cda));
263*5f80ce2aSJacob Faibussowitsch   CHKERRQ(DMDAGetCorners(cda,&xs,&ys,0,&xm,&ym,0));
264c4762a1bSJed Brown 
265*5f80ce2aSJacob Faibussowitsch   CHKERRQ(DMGetLocalVector(user->da,&localX));
266*5f80ce2aSJacob Faibussowitsch   CHKERRQ(DMGetLocalVector(user->da,&localXdot));
267c4762a1bSJed Brown 
268*5f80ce2aSJacob Faibussowitsch   CHKERRQ(DMGlobalToLocalBegin(user->da,X,INSERT_VALUES,localX));
269*5f80ce2aSJacob Faibussowitsch   CHKERRQ(DMGlobalToLocalEnd(user->da,X,INSERT_VALUES,localX));
270*5f80ce2aSJacob Faibussowitsch   CHKERRQ(DMGlobalToLocalBegin(user->da,Xdot,INSERT_VALUES,localXdot));
271*5f80ce2aSJacob Faibussowitsch   CHKERRQ(DMGlobalToLocalEnd(user->da,Xdot,INSERT_VALUES,localXdot));
272c4762a1bSJed Brown 
273*5f80ce2aSJacob Faibussowitsch   CHKERRQ(DMGetCoordinatesLocal(user->da,&gc));
274c4762a1bSJed Brown 
275*5f80ce2aSJacob Faibussowitsch   CHKERRQ(DMDAVecGetArrayRead(cda,gc,&coors));
276*5f80ce2aSJacob Faibussowitsch   CHKERRQ(DMDAVecGetArrayRead(user->da,localX,&p));
277*5f80ce2aSJacob Faibussowitsch   CHKERRQ(DMDAVecGetArrayRead(user->da,localXdot,&pdot));
278*5f80ce2aSJacob Faibussowitsch   CHKERRQ(DMDAVecGetArray(user->da,F,&f));
279c4762a1bSJed Brown 
280c4762a1bSJed Brown   user->disper_coe = PetscPowScalar((user->lambda*user->ws)/(2*user->H),2)*user->q*(1.0-PetscExpScalar(-t/user->lambda));
281c4762a1bSJed Brown   for (i=xs; i < xs+xm; i++) {
282c4762a1bSJed Brown     for (j=ys; j < ys+ym; j++) {
283c4762a1bSJed Brown       if (i == 0 || j == 0 || i == M-1 || j == N-1) {
284*5f80ce2aSJacob Faibussowitsch         CHKERRQ(BoundaryConditions(p,coors,i,j,M,N,f,user));
285c4762a1bSJed Brown       } else {
286*5f80ce2aSJacob Faibussowitsch         CHKERRQ(adv1(p,coors[j][i].y,i,j,M,&p_adv1,user));
287*5f80ce2aSJacob Faibussowitsch         CHKERRQ(adv2(p,coors[j][i].x,i,j,N,&p_adv2,user));
288*5f80ce2aSJacob Faibussowitsch         CHKERRQ(diffuse(p,i,j,t,&p_diff,user));
289c4762a1bSJed Brown         f[j][i] = -p_adv1 - p_adv2 + p_diff - pdot[j][i];
290c4762a1bSJed Brown       }
291c4762a1bSJed Brown     }
292c4762a1bSJed Brown   }
293*5f80ce2aSJacob Faibussowitsch   CHKERRQ(DMDAVecRestoreArrayRead(user->da,localX,&p));
294*5f80ce2aSJacob Faibussowitsch   CHKERRQ(DMDAVecRestoreArrayRead(user->da,localX,&pdot));
295*5f80ce2aSJacob Faibussowitsch   CHKERRQ(DMRestoreLocalVector(user->da,&localX));
296*5f80ce2aSJacob Faibussowitsch   CHKERRQ(DMRestoreLocalVector(user->da,&localXdot));
297*5f80ce2aSJacob Faibussowitsch   CHKERRQ(DMDAVecRestoreArray(user->da,F,&f));
298*5f80ce2aSJacob Faibussowitsch   CHKERRQ(DMDAVecRestoreArrayRead(cda,gc,&coors));
299c4762a1bSJed Brown 
300c4762a1bSJed Brown   PetscFunctionReturn(0);
301c4762a1bSJed Brown }
302c4762a1bSJed Brown 
303c4762a1bSJed Brown PetscErrorCode IJacobian(TS ts,PetscReal t,Vec X,Vec Xdot,PetscReal a,Mat J,Mat Jpre,void *ctx)
304c4762a1bSJed Brown {
305c4762a1bSJed Brown   AppCtx         *user=(AppCtx*)ctx;
306c4762a1bSJed Brown   DM             cda;
307c4762a1bSJed Brown   DMDACoor2d     **coors;
308c4762a1bSJed Brown   PetscInt       i,j;
309c4762a1bSJed Brown   PetscInt       xs,ys,xm,ym,M,N;
310c4762a1bSJed Brown   Vec            gc;
311c4762a1bSJed Brown   PetscScalar    val[5],xi,yi;
312c4762a1bSJed Brown   MatStencil     row,col[5];
313c4762a1bSJed Brown   PetscScalar    c1,c3,c5;
314c4762a1bSJed Brown 
315c4762a1bSJed Brown   PetscFunctionBeginUser;
316*5f80ce2aSJacob Faibussowitsch   CHKERRQ(DMDAGetInfo(user->da,NULL,&M,&N,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL));
317*5f80ce2aSJacob Faibussowitsch   CHKERRQ(DMGetCoordinateDM(user->da,&cda));
318*5f80ce2aSJacob Faibussowitsch   CHKERRQ(DMDAGetCorners(cda,&xs,&ys,0,&xm,&ym,0));
319c4762a1bSJed Brown 
320*5f80ce2aSJacob Faibussowitsch   CHKERRQ(DMGetCoordinatesLocal(user->da,&gc));
321*5f80ce2aSJacob Faibussowitsch   CHKERRQ(DMDAVecGetArrayRead(cda,gc,&coors));
322c4762a1bSJed Brown   for (i=xs; i < xs+xm; i++) {
323c4762a1bSJed Brown     for (j=ys; j < ys+ym; j++) {
324c4762a1bSJed Brown       PetscInt nc = 0;
325c4762a1bSJed Brown       xi = coors[j][i].x; yi = coors[j][i].y;
326c4762a1bSJed Brown       row.i = i; row.j = j;
327c4762a1bSJed Brown       if (i == 0 || j == 0 || i == M-1 || j == N-1) {
328c4762a1bSJed Brown         if (user->bc == 0) {
329c4762a1bSJed Brown           col[nc].i = i; col[nc].j = j; val[nc++] = 1.0;
330c4762a1bSJed Brown         } else {
331c4762a1bSJed Brown           PetscScalar fthetac,fwc;
332c4762a1bSJed Brown           fthetac = user->ws/(2*user->H)*(user->PM_min - user->Pmax*PetscSinScalar(xi));
333c4762a1bSJed Brown           fwc     = (yi*yi/2.0 - user->ws*yi);
334c4762a1bSJed Brown           if (i==0 && j==0) {
335c4762a1bSJed Brown             col[nc].i = i+1; col[nc].j = j;   val[nc++] = fwc/user->dx;
336c4762a1bSJed Brown             col[nc].i = i;   col[nc].j = j+1; val[nc++] = -user->disper_coe/user->dy;
337c4762a1bSJed Brown             col[nc].i = i;   col[nc].j = j;   val[nc++] = -fwc/user->dx + fthetac + user->disper_coe/user->dy;
338c4762a1bSJed Brown           } else if (i==0 && j == N-1) {
339c4762a1bSJed Brown             col[nc].i = i+1; col[nc].j = j;   val[nc++] = fwc/user->dx;
340c4762a1bSJed Brown             col[nc].i = i;   col[nc].j = j-1; val[nc++] = user->disper_coe/user->dy;
341c4762a1bSJed Brown             col[nc].i = i;   col[nc].j = j;   val[nc++] = -fwc/user->dx + fthetac - user->disper_coe/user->dy;
342c4762a1bSJed Brown           } else if (i== M-1 && j == 0) {
343c4762a1bSJed Brown             col[nc].i = i-1; col[nc].j = j;   val[nc++] = -fwc/user->dx;
344c4762a1bSJed Brown             col[nc].i = i;   col[nc].j = j+1; val[nc++] = -user->disper_coe/user->dy;
345c4762a1bSJed Brown             col[nc].i = i;   col[nc].j = j;   val[nc++] =  fwc/user->dx + fthetac + user->disper_coe/user->dy;
346c4762a1bSJed Brown           } else if (i == M-1 && j == N-1) {
347c4762a1bSJed Brown             col[nc].i = i-1; col[nc].j = j;   val[nc++] = -fwc/user->dx;
348c4762a1bSJed Brown             col[nc].i = i;   col[nc].j = j-1; val[nc++] =  user->disper_coe/user->dy;
349c4762a1bSJed Brown             col[nc].i = i;   col[nc].j = j;   val[nc++] =  fwc/user->dx + fthetac - user->disper_coe/user->dy;
350c4762a1bSJed Brown           } else if (i==0) {
351c4762a1bSJed Brown             col[nc].i = i+1; col[nc].j = j;   val[nc++] = fwc/user->dx;
352c4762a1bSJed Brown             col[nc].i = i;   col[nc].j = j+1; val[nc++] = -user->disper_coe/(2*user->dy);
353c4762a1bSJed Brown             col[nc].i = i;   col[nc].j = j-1; val[nc++] =  user->disper_coe/(2*user->dy);
354c4762a1bSJed Brown             col[nc].i = i;   col[nc].j = j;   val[nc++] = -fwc/user->dx + fthetac;
355c4762a1bSJed Brown           } else if (i == M-1) {
356c4762a1bSJed Brown             col[nc].i = i-1; col[nc].j = j;   val[nc++] = -fwc/user->dx;
357c4762a1bSJed Brown             col[nc].i = i;   col[nc].j = j+1; val[nc++] = -user->disper_coe/(2*user->dy);
358c4762a1bSJed Brown             col[nc].i = i;   col[nc].j = j-1; val[nc++] =  user->disper_coe/(2*user->dy);
359c4762a1bSJed Brown             col[nc].i = i;   col[nc].j = j;   val[nc++] = fwc/user->dx + fthetac;
360c4762a1bSJed Brown           } else if (j==0) {
361c4762a1bSJed Brown             col[nc].i = i+1; col[nc].j = j;   val[nc++] = fwc/(2*user->dx);
362c4762a1bSJed Brown             col[nc].i = i-1; col[nc].j = j;   val[nc++] = -fwc/(2*user->dx);
363c4762a1bSJed Brown             col[nc].i = i;   col[nc].j = j+1; val[nc++] = -user->disper_coe/user->dy;
364c4762a1bSJed Brown             col[nc].i = i;   col[nc].j = j;   val[nc++] = user->disper_coe/user->dy + fthetac;
365c4762a1bSJed Brown           } else if (j == N-1) {
366c4762a1bSJed Brown             col[nc].i = i+1; col[nc].j = j;   val[nc++] = fwc/(2*user->dx);
367c4762a1bSJed Brown             col[nc].i = i-1; col[nc].j = j;   val[nc++] = -fwc/(2*user->dx);
368c4762a1bSJed Brown             col[nc].i = i;   col[nc].j = j-1; val[nc++] = user->disper_coe/user->dy;
369c4762a1bSJed Brown             col[nc].i = i;   col[nc].j = j;   val[nc++] = -user->disper_coe/user->dy + fthetac;
370c4762a1bSJed Brown           }
371c4762a1bSJed Brown         }
372c4762a1bSJed Brown       } else {
373c4762a1bSJed Brown         c1        = (yi-user->ws)/(2*user->dx);
374c4762a1bSJed Brown         c3        = (user->ws/(2.0*user->H))*(user->PM_min - user->Pmax*PetscSinScalar(xi))/(2*user->dy);
375c4762a1bSJed Brown         c5        = (PetscPowScalar((user->lambda*user->ws)/(2*user->H),2)*user->q*(1.0-PetscExpScalar(-t/user->lambda)))/(user->dy*user->dy);
376c4762a1bSJed Brown         col[nc].i = i-1; col[nc].j = j;   val[nc++] = c1;
377c4762a1bSJed Brown         col[nc].i = i+1; col[nc].j = j;   val[nc++] = -c1;
378c4762a1bSJed Brown         col[nc].i = i;   col[nc].j = j-1; val[nc++] = c3 + c5;
379c4762a1bSJed Brown         col[nc].i = i;   col[nc].j = j+1; val[nc++] = -c3 + c5;
380c4762a1bSJed Brown         col[nc].i = i;   col[nc].j = j;   val[nc++] = -2*c5 -a;
381c4762a1bSJed Brown       }
382*5f80ce2aSJacob Faibussowitsch       CHKERRQ(MatSetValuesStencil(Jpre,1,&row,nc,col,val,INSERT_VALUES));
383c4762a1bSJed Brown     }
384c4762a1bSJed Brown   }
385*5f80ce2aSJacob Faibussowitsch   CHKERRQ(DMDAVecRestoreArrayRead(cda,gc,&coors));
386c4762a1bSJed Brown 
387*5f80ce2aSJacob Faibussowitsch   CHKERRQ(MatAssemblyBegin(Jpre,MAT_FINAL_ASSEMBLY));
388*5f80ce2aSJacob Faibussowitsch   CHKERRQ(MatAssemblyEnd(Jpre,MAT_FINAL_ASSEMBLY));
389c4762a1bSJed Brown   if (J != Jpre) {
390*5f80ce2aSJacob Faibussowitsch     CHKERRQ(MatAssemblyBegin(J,MAT_FINAL_ASSEMBLY));
391*5f80ce2aSJacob Faibussowitsch     CHKERRQ(MatAssemblyEnd(J,MAT_FINAL_ASSEMBLY));
392c4762a1bSJed Brown   }
393c4762a1bSJed Brown   PetscFunctionReturn(0);
394c4762a1bSJed Brown }
395c4762a1bSJed Brown 
396c4762a1bSJed Brown PetscErrorCode Parameter_settings(AppCtx *user)
397c4762a1bSJed Brown {
398c4762a1bSJed Brown   PetscBool      flg;
399c4762a1bSJed Brown 
400c4762a1bSJed Brown   PetscFunctionBeginUser;
401c4762a1bSJed Brown 
402c4762a1bSJed Brown   /* Set default parameters */
403c4762a1bSJed Brown   user->ws     = 1.0;
404c4762a1bSJed Brown   user->H      = 5.0;  user->Pmax   = 2.1;
405c4762a1bSJed Brown   user->PM_min = 1.0;  user->lambda = 0.1;
406c4762a1bSJed Brown   user->q      = 1.0;  user->mux    = PetscAsinScalar(user->PM_min/user->Pmax);
407c4762a1bSJed Brown   user->sigmax = 0.1;
408c4762a1bSJed Brown   user->sigmay = 0.1;  user->rho  = 0.0;
409c4762a1bSJed Brown   user->t0     = 0.0;  user->tmax = 2.0;
410c4762a1bSJed Brown   user->xmin   = -1.0; user->xmax = 10.0;
411c4762a1bSJed Brown   user->ymin   = -1.0; user->ymax = 10.0;
412c4762a1bSJed Brown   user->bc     = 0;
413c4762a1bSJed Brown 
414*5f80ce2aSJacob Faibussowitsch   CHKERRQ(PetscOptionsGetScalar(NULL,NULL,"-ws",&user->ws,&flg));
415*5f80ce2aSJacob Faibussowitsch   CHKERRQ(PetscOptionsGetScalar(NULL,NULL,"-Inertia",&user->H,&flg));
416*5f80ce2aSJacob Faibussowitsch   CHKERRQ(PetscOptionsGetScalar(NULL,NULL,"-Pmax",&user->Pmax,&flg));
417*5f80ce2aSJacob Faibussowitsch   CHKERRQ(PetscOptionsGetScalar(NULL,NULL,"-PM_min",&user->PM_min,&flg));
418*5f80ce2aSJacob Faibussowitsch   CHKERRQ(PetscOptionsGetScalar(NULL,NULL,"-lambda",&user->lambda,&flg));
419*5f80ce2aSJacob Faibussowitsch   CHKERRQ(PetscOptionsGetScalar(NULL,NULL,"-q",&user->q,&flg));
420*5f80ce2aSJacob Faibussowitsch   CHKERRQ(PetscOptionsGetScalar(NULL,NULL,"-mux",&user->mux,&flg));
421*5f80ce2aSJacob Faibussowitsch   CHKERRQ(PetscOptionsGetScalar(NULL,NULL,"-sigmax",&user->sigmax,&flg));
422*5f80ce2aSJacob Faibussowitsch   CHKERRQ(PetscOptionsGetScalar(NULL,NULL,"-muy",&user->muy,&flg));
423*5f80ce2aSJacob Faibussowitsch   CHKERRQ(PetscOptionsGetScalar(NULL,NULL,"-sigmay",&user->sigmay,&flg));
424*5f80ce2aSJacob Faibussowitsch   CHKERRQ(PetscOptionsGetScalar(NULL,NULL,"-rho",&user->rho,&flg));
425*5f80ce2aSJacob Faibussowitsch   CHKERRQ(PetscOptionsGetScalar(NULL,NULL,"-t0",&user->t0,&flg));
426*5f80ce2aSJacob Faibussowitsch   CHKERRQ(PetscOptionsGetScalar(NULL,NULL,"-tmax",&user->tmax,&flg));
427*5f80ce2aSJacob Faibussowitsch   CHKERRQ(PetscOptionsGetScalar(NULL,NULL,"-xmin",&user->xmin,&flg));
428*5f80ce2aSJacob Faibussowitsch   CHKERRQ(PetscOptionsGetScalar(NULL,NULL,"-xmax",&user->xmax,&flg));
429*5f80ce2aSJacob Faibussowitsch   CHKERRQ(PetscOptionsGetScalar(NULL,NULL,"-ymin",&user->ymin,&flg));
430*5f80ce2aSJacob Faibussowitsch   CHKERRQ(PetscOptionsGetScalar(NULL,NULL,"-ymax",&user->ymax,&flg));
431*5f80ce2aSJacob Faibussowitsch   CHKERRQ(PetscOptionsGetInt(NULL,NULL,"-bc_type",&user->bc,&flg));
432c4762a1bSJed Brown   user->muy = user->ws;
433c4762a1bSJed Brown   PetscFunctionReturn(0);
434c4762a1bSJed Brown }
435c4762a1bSJed Brown 
436c4762a1bSJed Brown /*TEST
437c4762a1bSJed Brown 
438c4762a1bSJed Brown    build:
439c4762a1bSJed Brown       requires: !complex
440c4762a1bSJed Brown 
441c4762a1bSJed Brown    test:
442c4762a1bSJed Brown       args: -nox -ts_max_steps 2
443c4762a1bSJed Brown       localrunfiles: petscopt_ex6
444c4762a1bSJed Brown       timeoutfactor: 4
445c4762a1bSJed Brown 
446c4762a1bSJed Brown TEST*/
447