xref: /petsc/src/ts/tutorials/power_grid/ex8.c (revision 5f80ce2ab25dff0f4601e710601cbbcecf323266)
1c4762a1bSJed Brown static char help[] = "Time-dependent PDE in 2d for calculating joint PDF. \n";
2c4762a1bSJed Brown /*
3c4762a1bSJed Brown    p_t = -x_t*p_x -y_t*p_y + f(t)*p_yy
4c4762a1bSJed Brown    xmin < x < xmax, ymin < y < ymax;
5c4762a1bSJed Brown 
6c4762a1bSJed Brown    Boundary conditions:
7c4762a1bSJed Brown    Zero dirichlet in y using ghosted values
8c4762a1bSJed Brown    Periodic in x
9c4762a1bSJed Brown 
10c4762a1bSJed Brown    Note that x_t and y_t in the above are given functions of x and y; they are not derivatives of x and y.
11c4762a1bSJed Brown    x_t = (y - ws)
12c4762a1bSJed Brown    y_t = (ws/2H)*(Pm - Pmax*sin(x) - D*(w - ws))
13c4762a1bSJed Brown 
14c4762a1bSJed Brown    In this example, we can see the effect of a fault, that zeroes the electrical power output
15c4762a1bSJed Brown    Pmax*sin(x), on the PDF. The fault on/off times can be controlled by options -tf and -tcl respectively.
16c4762a1bSJed Brown 
17c4762a1bSJed Brown */
18c4762a1bSJed Brown 
19c4762a1bSJed Brown #include <petscdm.h>
20c4762a1bSJed Brown #include <petscdmda.h>
21c4762a1bSJed Brown #include <petscts.h>
22c4762a1bSJed Brown 
23c4762a1bSJed Brown /*
24c4762a1bSJed Brown    User-defined data structures and routines
25c4762a1bSJed Brown */
26c4762a1bSJed Brown typedef struct {
27c4762a1bSJed Brown   PetscScalar ws;   /* Synchronous speed */
28c4762a1bSJed Brown   PetscScalar H;    /* Inertia constant */
29c4762a1bSJed Brown   PetscScalar D;    /* Damping constant */
30c4762a1bSJed Brown   PetscScalar Pmax,Pmax_s; /* Maximum power output of generator */
31c4762a1bSJed Brown   PetscScalar PM_min; /* Mean mechanical power input */
32c4762a1bSJed Brown   PetscScalar lambda; /* correlation time */
33c4762a1bSJed Brown   PetscScalar q;      /* noise strength */
34c4762a1bSJed Brown   PetscScalar mux;    /* Initial average angle */
35c4762a1bSJed Brown   PetscScalar sigmax; /* Standard deviation of initial angle */
36c4762a1bSJed Brown   PetscScalar muy;    /* Average speed */
37c4762a1bSJed Brown   PetscScalar sigmay; /* standard deviation of initial speed */
38c4762a1bSJed Brown   PetscScalar rho;    /* Cross-correlation coefficient */
39c4762a1bSJed Brown   PetscScalar xmin;   /* left boundary of angle */
40c4762a1bSJed Brown   PetscScalar xmax;   /* right boundary of angle */
41c4762a1bSJed Brown   PetscScalar ymin;   /* bottom boundary of speed */
42c4762a1bSJed Brown   PetscScalar ymax;   /* top boundary of speed */
43c4762a1bSJed Brown   PetscScalar dx;     /* x step size */
44c4762a1bSJed Brown   PetscScalar dy;     /* y step size */
45c4762a1bSJed Brown   PetscScalar disper_coe; /* Dispersion coefficient */
46c4762a1bSJed Brown   DM          da;
47c4762a1bSJed Brown   PetscInt    st_width; /* Stencil width */
48c4762a1bSJed Brown   DMBoundaryType bx; /* x boundary type */
49c4762a1bSJed Brown   DMBoundaryType by; /* y boundary type */
50c4762a1bSJed Brown   PetscReal        tf,tcl; /* Fault incidence and clearing times */
51c4762a1bSJed Brown } AppCtx;
52c4762a1bSJed Brown 
53c4762a1bSJed Brown PetscErrorCode Parameter_settings(AppCtx*);
54c4762a1bSJed Brown PetscErrorCode ini_bou(Vec,AppCtx*);
55c4762a1bSJed Brown PetscErrorCode IFunction(TS,PetscReal,Vec,Vec,Vec,void*);
56c4762a1bSJed Brown PetscErrorCode IJacobian(TS,PetscReal,Vec,Vec,PetscReal,Mat,Mat,void*);
57c4762a1bSJed Brown PetscErrorCode PostStep(TS);
58c4762a1bSJed Brown 
59c4762a1bSJed Brown int main(int argc, char **argv)
60c4762a1bSJed Brown {
61c4762a1bSJed Brown   PetscErrorCode ierr;
62c4762a1bSJed Brown   Vec            x;  /* Solution vector */
63c4762a1bSJed Brown   TS             ts;   /* Time-stepping context */
64c4762a1bSJed Brown   AppCtx         user; /* Application context */
65c4762a1bSJed Brown   PetscViewer    viewer;
66c4762a1bSJed Brown 
67c4762a1bSJed Brown   ierr = PetscInitialize(&argc,&argv,"petscopt_ex8", help);if (ierr) return ierr;
68c4762a1bSJed Brown 
69c4762a1bSJed Brown   /* Get physics and time parameters */
70*5f80ce2aSJacob Faibussowitsch   CHKERRQ(Parameter_settings(&user));
71c4762a1bSJed Brown   /* Create a 2D DA with dof = 1 */
72*5f80ce2aSJacob Faibussowitsch   CHKERRQ(DMDACreate2d(PETSC_COMM_WORLD,user.bx,user.by,DMDA_STENCIL_STAR,4,4,PETSC_DECIDE,PETSC_DECIDE,1,user.st_width,NULL,NULL,&user.da));
73*5f80ce2aSJacob Faibussowitsch   CHKERRQ(DMSetFromOptions(user.da));
74*5f80ce2aSJacob Faibussowitsch   CHKERRQ(DMSetUp(user.da));
75c4762a1bSJed Brown   /* Set x and y coordinates */
76*5f80ce2aSJacob Faibussowitsch   CHKERRQ(DMDASetUniformCoordinates(user.da,user.xmin,user.xmax,user.ymin,user.ymax,0,0));
77*5f80ce2aSJacob Faibussowitsch   CHKERRQ(DMDASetCoordinateName(user.da,0,"X - the angle"));
78*5f80ce2aSJacob Faibussowitsch   CHKERRQ(DMDASetCoordinateName(user.da,1,"Y - the speed"));
79c4762a1bSJed Brown 
80c4762a1bSJed Brown   /* Get global vector x from DM  */
81*5f80ce2aSJacob Faibussowitsch   CHKERRQ(DMCreateGlobalVector(user.da,&x));
82c4762a1bSJed Brown 
83*5f80ce2aSJacob Faibussowitsch   CHKERRQ(ini_bou(x,&user));
84*5f80ce2aSJacob Faibussowitsch   CHKERRQ(PetscViewerBinaryOpen(PETSC_COMM_WORLD,"ini_x",FILE_MODE_WRITE,&viewer));
85*5f80ce2aSJacob Faibussowitsch   CHKERRQ(VecView(x,viewer));
86*5f80ce2aSJacob Faibussowitsch   CHKERRQ(PetscViewerDestroy(&viewer));
87c4762a1bSJed Brown 
88*5f80ce2aSJacob Faibussowitsch   CHKERRQ(TSCreate(PETSC_COMM_WORLD,&ts));
89*5f80ce2aSJacob Faibussowitsch   CHKERRQ(TSSetDM(ts,user.da));
90*5f80ce2aSJacob Faibussowitsch   CHKERRQ(TSSetProblemType(ts,TS_NONLINEAR));
91*5f80ce2aSJacob Faibussowitsch   CHKERRQ(TSSetType(ts,TSARKIMEX));
92*5f80ce2aSJacob Faibussowitsch   CHKERRQ(TSSetIFunction(ts,NULL,IFunction,&user));
93*5f80ce2aSJacob Faibussowitsch   /*  CHKERRQ(TSSetIJacobian(ts,NULL,NULL,IJacobian,&user)); */
94*5f80ce2aSJacob Faibussowitsch   CHKERRQ(TSSetApplicationContext(ts,&user));
95*5f80ce2aSJacob Faibussowitsch   CHKERRQ(TSSetTimeStep(ts,.005));
96*5f80ce2aSJacob Faibussowitsch   CHKERRQ(TSSetFromOptions(ts));
97*5f80ce2aSJacob Faibussowitsch   CHKERRQ(TSSetPostStep(ts,PostStep));
98*5f80ce2aSJacob Faibussowitsch   CHKERRQ(TSSolve(ts,x));
99c4762a1bSJed Brown 
100*5f80ce2aSJacob Faibussowitsch   CHKERRQ(PetscViewerBinaryOpen(PETSC_COMM_WORLD,"fin_x",FILE_MODE_WRITE,&viewer));
101*5f80ce2aSJacob Faibussowitsch   CHKERRQ(VecView(x,viewer));
102*5f80ce2aSJacob Faibussowitsch   CHKERRQ(PetscViewerDestroy(&viewer));
103c4762a1bSJed Brown 
104*5f80ce2aSJacob Faibussowitsch   CHKERRQ(VecDestroy(&x));
105*5f80ce2aSJacob Faibussowitsch   CHKERRQ(DMDestroy(&user.da));
106*5f80ce2aSJacob Faibussowitsch   CHKERRQ(TSDestroy(&ts));
107c4762a1bSJed Brown   ierr = PetscFinalize();
108c4762a1bSJed Brown   return ierr;
109c4762a1bSJed Brown }
110c4762a1bSJed Brown 
111c4762a1bSJed Brown PetscErrorCode PostStep(TS ts)
112c4762a1bSJed Brown {
113c4762a1bSJed Brown   Vec          X;
114c4762a1bSJed Brown   AppCtx      *user;
115c4762a1bSJed Brown   PetscReal    t;
116c4762a1bSJed Brown   PetscScalar  asum;
117c4762a1bSJed Brown 
118c4762a1bSJed Brown   PetscFunctionBegin;
119*5f80ce2aSJacob Faibussowitsch   CHKERRQ(TSGetApplicationContext(ts,&user));
120*5f80ce2aSJacob Faibussowitsch   CHKERRQ(TSGetTime(ts,&t));
121*5f80ce2aSJacob Faibussowitsch   CHKERRQ(TSGetSolution(ts,&X));
122c4762a1bSJed Brown   /*
123c4762a1bSJed Brown   if (t >= .2) {
124*5f80ce2aSJacob Faibussowitsch     CHKERRQ(TSGetSolution(ts,&X));
125*5f80ce2aSJacob Faibussowitsch     CHKERRQ(VecView(X,PETSC_VIEWER_BINARY_WORLD));
126c4762a1bSJed Brown     exit(0);
127c4762a1bSJed Brown      results in initial conditions after fault in binaryoutput
128c4762a1bSJed Brown   }*/
129c4762a1bSJed Brown 
130c4762a1bSJed Brown   if ((t > user->tf) && (t < user->tcl)) user->Pmax = 0.0; /* A short-circuit that drives the electrical power output (Pmax*sin(delta)) to zero */
131c4762a1bSJed Brown   else user->Pmax = user->Pmax_s;
132c4762a1bSJed Brown 
133*5f80ce2aSJacob Faibussowitsch   CHKERRQ(VecSum(X,&asum));
134*5f80ce2aSJacob Faibussowitsch   CHKERRQ(PetscPrintf(PETSC_COMM_WORLD,"sum(p) at t = %f = %f\n",(double)t,(double)(asum)));
135c4762a1bSJed Brown   PetscFunctionReturn(0);
136c4762a1bSJed Brown }
137c4762a1bSJed Brown 
138c4762a1bSJed Brown PetscErrorCode ini_bou(Vec X,AppCtx* user)
139c4762a1bSJed Brown {
140c4762a1bSJed Brown   DM            cda;
141c4762a1bSJed Brown   DMDACoor2d  **coors;
142c4762a1bSJed Brown   PetscScalar **p;
143c4762a1bSJed Brown   Vec           gc;
144c4762a1bSJed Brown   PetscInt      M,N,Ir,J;
145c4762a1bSJed Brown   PetscMPIInt   rank;
146c4762a1bSJed Brown 
147c4762a1bSJed Brown   PetscFunctionBeginUser;
148*5f80ce2aSJacob Faibussowitsch   CHKERRMPI(MPI_Comm_rank(PETSC_COMM_WORLD,&rank));
149*5f80ce2aSJacob Faibussowitsch   CHKERRQ(DMDAGetInfo(user->da,NULL,&M,&N,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL));
150c4762a1bSJed Brown   user->dx = (user->xmax - user->xmin)/(M-1); user->dy = (user->ymax - user->ymin)/(N-1);
151*5f80ce2aSJacob Faibussowitsch   CHKERRQ(DMGetCoordinateDM(user->da,&cda));
152*5f80ce2aSJacob Faibussowitsch   CHKERRQ(DMGetCoordinates(user->da,&gc));
153*5f80ce2aSJacob Faibussowitsch   CHKERRQ(DMDAVecGetArrayRead(cda,gc,&coors));
154*5f80ce2aSJacob Faibussowitsch   CHKERRQ(DMDAVecGetArray(user->da,X,&p));
155c4762a1bSJed Brown 
156c4762a1bSJed Brown   /* Point mass at (mux,muy) */
157*5f80ce2aSJacob Faibussowitsch   CHKERRQ(PetscPrintf(PETSC_COMM_WORLD,"Original user->mux = %f, user->muy = %f\n",user->mux,user->muy));
158*5f80ce2aSJacob Faibussowitsch   CHKERRQ(DMDAGetLogicalCoordinate(user->da,user->mux,user->muy,0.0,&Ir,&J,NULL,&user->mux,&user->muy,NULL));
159c4762a1bSJed Brown   user->PM_min = user->Pmax*PetscSinScalar(user->mux);
160*5f80ce2aSJacob Faibussowitsch   CHKERRQ(PetscPrintf(PETSC_COMM_WORLD,"Corrected user->mux = %f, user->muy = %f user->PM_min = %f,user->dx = %f\n",user->mux,user->muy,user->PM_min,user->dx));
161c4762a1bSJed Brown   if (Ir > -1 && J > -1) {
162c4762a1bSJed Brown     p[J][Ir] = 1.0;
163c4762a1bSJed Brown   }
164c4762a1bSJed Brown 
165*5f80ce2aSJacob Faibussowitsch   CHKERRQ(DMDAVecRestoreArrayRead(cda,gc,&coors));
166*5f80ce2aSJacob Faibussowitsch   CHKERRQ(DMDAVecRestoreArray(user->da,X,&p));
167c4762a1bSJed Brown   PetscFunctionReturn(0);
168c4762a1bSJed Brown }
169c4762a1bSJed Brown 
170c4762a1bSJed Brown /* First advection term */
171c4762a1bSJed Brown PetscErrorCode adv1(PetscScalar **p,PetscScalar y,PetscInt i,PetscInt j,PetscInt M,PetscScalar *p1,AppCtx *user)
172c4762a1bSJed Brown {
173c4762a1bSJed Brown   PetscScalar f,fpos,fneg;
174c4762a1bSJed Brown   PetscFunctionBegin;
175c4762a1bSJed Brown   f   =  (y - user->ws);
176c4762a1bSJed Brown   fpos = PetscMax(f,0);
177c4762a1bSJed Brown   fneg = PetscMin(f,0);
178c4762a1bSJed Brown   if (user->st_width == 1) {
179c4762a1bSJed Brown     *p1 = fpos*(p[j][i] - p[j][i-1])/user->dx + fneg*(p[j][i+1] - p[j][i])/user->dx;
180c4762a1bSJed Brown   } else if (user->st_width == 2) {
181c4762a1bSJed Brown     *p1 = fpos*(3*p[j][i] - 4*p[j][i-1] + p[j][i-2])/(2*user->dx) + fneg*(-p[j][i+2] + 4*p[j][i+1] - 3*p[j][i])/(2*user->dx);
182c4762a1bSJed Brown   } else if (user->st_width == 3) {
183c4762a1bSJed Brown     *p1 = fpos*(2*p[j][i+1] + 3*p[j][i] - 6*p[j][i-1] + p[j][i-2])/(6*user->dx) + fneg*(-p[j][i+2] + 6*p[j][i+1] - 3*p[j][i] - 2*p[j][i-1])/(6*user->dx);
184c4762a1bSJed Brown   }
185c4762a1bSJed Brown   /* *p1 = f*(p[j][i+1] - p[j][i-1])/user->dx;*/
186c4762a1bSJed Brown   PetscFunctionReturn(0);
187c4762a1bSJed Brown }
188c4762a1bSJed Brown 
189c4762a1bSJed Brown /* Second advection term */
190c4762a1bSJed Brown PetscErrorCode adv2(PetscScalar **p,PetscScalar x,PetscScalar y,PetscInt i,PetscInt j,PetscInt N,PetscScalar *p2,AppCtx *user)
191c4762a1bSJed Brown {
192c4762a1bSJed Brown   PetscScalar f,fpos,fneg;
193c4762a1bSJed Brown   PetscFunctionBegin;
194c4762a1bSJed Brown   f   = (user->ws/(2*user->H))*(user->PM_min - user->Pmax*PetscSinScalar(x) - user->D*(y - user->ws));
195c4762a1bSJed Brown   fpos = PetscMax(f,0);
196c4762a1bSJed Brown   fneg = PetscMin(f,0);
197c4762a1bSJed Brown   if (user->st_width == 1) {
198c4762a1bSJed Brown     *p2 = fpos*(p[j][i] - p[j-1][i])/user->dy + fneg*(p[j+1][i] - p[j][i])/user->dy;
199c4762a1bSJed Brown   } else if (user->st_width ==2) {
200c4762a1bSJed Brown     *p2 = fpos*(3*p[j][i] - 4*p[j-1][i] + p[j-2][i])/(2*user->dy) + fneg*(-p[j+2][i] + 4*p[j+1][i] - 3*p[j][i])/(2*user->dy);
201c4762a1bSJed Brown   } else if (user->st_width == 3) {
202c4762a1bSJed Brown     *p2 = fpos*(2*p[j+1][i] + 3*p[j][i] - 6*p[j-1][i] + p[j-2][i])/(6*user->dy) + fneg*(-p[j+2][i] + 6*p[j+1][i] - 3*p[j][i] - 2*p[j-1][i])/(6*user->dy);
203c4762a1bSJed Brown   }
204c4762a1bSJed Brown 
205c4762a1bSJed Brown   /* *p2 = f*(p[j+1][i] - p[j-1][i])/user->dy;*/
206c4762a1bSJed Brown   PetscFunctionReturn(0);
207c4762a1bSJed Brown }
208c4762a1bSJed Brown 
209c4762a1bSJed Brown /* Diffusion term */
210c4762a1bSJed Brown PetscErrorCode diffuse(PetscScalar **p,PetscInt i,PetscInt j,PetscReal t,PetscScalar *p_diff,AppCtx * user)
211c4762a1bSJed Brown {
212c4762a1bSJed Brown   PetscFunctionBeginUser;
213c4762a1bSJed Brown   if (user->st_width == 1) {
214c4762a1bSJed Brown     *p_diff = user->disper_coe*((p[j-1][i] - 2*p[j][i] + p[j+1][i])/(user->dy*user->dy));
215c4762a1bSJed Brown   } else if (user->st_width == 2) {
216c4762a1bSJed Brown     *p_diff = user->disper_coe*((-p[j-2][i] + 16*p[j-1][i] - 30*p[j][i] + 16*p[j+1][i] - p[j+2][i])/(12.0*user->dy*user->dy));
217c4762a1bSJed Brown   } else if (user->st_width == 3) {
218c4762a1bSJed Brown     *p_diff = user->disper_coe*((2*p[j-3][i] - 27*p[j-2][i] + 270*p[j-1][i] - 490*p[j][i] + 270*p[j+1][i] - 27*p[j+2][i] + 2*p[j+3][i])/(180.0*user->dy*user->dy));
219c4762a1bSJed Brown   }
220c4762a1bSJed Brown   PetscFunctionReturn(0);
221c4762a1bSJed Brown }
222c4762a1bSJed Brown 
223c4762a1bSJed Brown PetscErrorCode IFunction(TS ts,PetscReal t,Vec X,Vec Xdot,Vec F,void *ctx)
224c4762a1bSJed Brown {
225c4762a1bSJed Brown   AppCtx       *user   = (AppCtx*)ctx;
226c4762a1bSJed Brown   DM            cda;
227c4762a1bSJed Brown   DMDACoor2d  **coors;
228c4762a1bSJed Brown   PetscScalar **p,**f,**pdot;
229c4762a1bSJed Brown   PetscInt      i,j;
230c4762a1bSJed Brown   PetscInt      xs,ys,xm,ym,M,N;
231c4762a1bSJed Brown   Vec           localX,gc,localXdot;
232c4762a1bSJed Brown   PetscScalar   p_adv1 = 0.0,p_adv2 = 0.0,p_diff = 0;
233c4762a1bSJed Brown   PetscScalar   diffuse1,gamma;
234c4762a1bSJed Brown 
235c4762a1bSJed Brown   PetscFunctionBeginUser;
236*5f80ce2aSJacob Faibussowitsch   CHKERRQ(DMDAGetInfo(user->da,NULL,&M,&N,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL));
237*5f80ce2aSJacob Faibussowitsch   CHKERRQ(DMGetCoordinateDM(user->da,&cda));
238*5f80ce2aSJacob Faibussowitsch   CHKERRQ(DMDAGetCorners(cda,&xs,&ys,0,&xm,&ym,0));
239c4762a1bSJed Brown 
240*5f80ce2aSJacob Faibussowitsch   CHKERRQ(DMGetLocalVector(user->da,&localX));
241*5f80ce2aSJacob Faibussowitsch   CHKERRQ(DMGetLocalVector(user->da,&localXdot));
242c4762a1bSJed Brown 
243*5f80ce2aSJacob Faibussowitsch   CHKERRQ(DMGlobalToLocalBegin(user->da,X,INSERT_VALUES,localX));
244*5f80ce2aSJacob Faibussowitsch   CHKERRQ(DMGlobalToLocalEnd(user->da,X,INSERT_VALUES,localX));
245*5f80ce2aSJacob Faibussowitsch   CHKERRQ(DMGlobalToLocalBegin(user->da,Xdot,INSERT_VALUES,localXdot));
246*5f80ce2aSJacob Faibussowitsch   CHKERRQ(DMGlobalToLocalEnd(user->da,Xdot,INSERT_VALUES,localXdot));
247c4762a1bSJed Brown 
248*5f80ce2aSJacob Faibussowitsch   CHKERRQ(DMGetCoordinatesLocal(user->da,&gc));
249c4762a1bSJed Brown 
250*5f80ce2aSJacob Faibussowitsch   CHKERRQ(DMDAVecGetArrayRead(cda,gc,&coors));
251*5f80ce2aSJacob Faibussowitsch   CHKERRQ(DMDAVecGetArrayRead(user->da,localX,&p));
252*5f80ce2aSJacob Faibussowitsch   CHKERRQ(DMDAVecGetArrayRead(user->da,localXdot,&pdot));
253*5f80ce2aSJacob Faibussowitsch   CHKERRQ(DMDAVecGetArray(user->da,F,&f));
254c4762a1bSJed Brown 
255c4762a1bSJed Brown   gamma = user->D*user->ws/(2*user->H);
256c4762a1bSJed Brown   diffuse1 = user->lambda*user->lambda*user->q/(user->lambda*gamma+1)*(1.0 - PetscExpScalar(-t*(gamma+1.0)/user->lambda));
257c4762a1bSJed Brown   user->disper_coe = user->ws*user->ws/(4*user->H*user->H)*diffuse1;
258c4762a1bSJed Brown 
259c4762a1bSJed Brown   for (i=xs; i < xs+xm; i++) {
260c4762a1bSJed Brown     for (j=ys; j < ys+ym; j++) {
261*5f80ce2aSJacob Faibussowitsch       CHKERRQ(adv1(p,coors[j][i].y,i,j,M,&p_adv1,user));
262*5f80ce2aSJacob Faibussowitsch       CHKERRQ(adv2(p,coors[j][i].x,coors[j][i].y,i,j,N,&p_adv2,user));
263*5f80ce2aSJacob Faibussowitsch       CHKERRQ(diffuse(p,i,j,t,&p_diff,user));
264c4762a1bSJed Brown       f[j][i] = -p_adv1 - p_adv2  + p_diff - pdot[j][i];
265c4762a1bSJed Brown     }
266c4762a1bSJed Brown   }
267*5f80ce2aSJacob Faibussowitsch   CHKERRQ(DMDAVecRestoreArrayRead(user->da,localX,&p));
268*5f80ce2aSJacob Faibussowitsch   CHKERRQ(DMDAVecRestoreArrayRead(user->da,localX,&pdot));
269*5f80ce2aSJacob Faibussowitsch   CHKERRQ(DMRestoreLocalVector(user->da,&localX));
270*5f80ce2aSJacob Faibussowitsch   CHKERRQ(DMRestoreLocalVector(user->da,&localXdot));
271*5f80ce2aSJacob Faibussowitsch   CHKERRQ(DMDAVecRestoreArray(user->da,F,&f));
272*5f80ce2aSJacob Faibussowitsch   CHKERRQ(DMDAVecRestoreArrayRead(cda,gc,&coors));
273c4762a1bSJed Brown 
274c4762a1bSJed Brown   PetscFunctionReturn(0);
275c4762a1bSJed Brown }
276c4762a1bSJed Brown 
277c4762a1bSJed Brown PetscErrorCode IJacobian(TS ts,PetscReal t,Vec X,Vec Xdot,PetscReal a,Mat J,Mat Jpre,void *ctx)
278c4762a1bSJed Brown {
279c4762a1bSJed Brown   AppCtx         *user=(AppCtx*)ctx;
280c4762a1bSJed Brown   DM             cda;
281c4762a1bSJed Brown   DMDACoor2d     **coors;
282c4762a1bSJed Brown   PetscInt       i,j;
283c4762a1bSJed Brown   PetscInt       xs,ys,xm,ym,M,N;
284c4762a1bSJed Brown   Vec            gc;
285c4762a1bSJed Brown   PetscScalar    val[5],xi,yi;
286c4762a1bSJed Brown   MatStencil     row,col[5];
287c4762a1bSJed Brown   PetscScalar    c1,c3,c5,c1pos,c1neg,c3pos,c3neg;
288c4762a1bSJed Brown 
289c4762a1bSJed Brown   PetscFunctionBeginUser;
290*5f80ce2aSJacob Faibussowitsch   CHKERRQ(DMDAGetInfo(user->da,NULL,&M,&N,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL));
291*5f80ce2aSJacob Faibussowitsch   CHKERRQ(DMGetCoordinateDM(user->da,&cda));
292*5f80ce2aSJacob Faibussowitsch   CHKERRQ(DMDAGetCorners(cda,&xs,&ys,0,&xm,&ym,0));
293c4762a1bSJed Brown 
294*5f80ce2aSJacob Faibussowitsch   CHKERRQ(DMGetCoordinatesLocal(user->da,&gc));
295*5f80ce2aSJacob Faibussowitsch   CHKERRQ(DMDAVecGetArrayRead(cda,gc,&coors));
296c4762a1bSJed Brown   for (i=xs; i < xs+xm; i++) {
297c4762a1bSJed Brown     for (j=ys; j < ys+ym; j++) {
298c4762a1bSJed Brown       PetscInt nc = 0;
299c4762a1bSJed Brown       xi = coors[j][i].x; yi = coors[j][i].y;
300c4762a1bSJed Brown       row.i = i; row.j = j;
301c4762a1bSJed Brown       c1        = (yi-user->ws)/user->dx;
302c4762a1bSJed Brown       c1pos    = PetscMax(c1,0);
303c4762a1bSJed Brown       c1neg    = PetscMin(c1,0);
304c4762a1bSJed Brown       c3        = (user->ws/(2.0*user->H))*(user->PM_min - user->Pmax*PetscSinScalar(xi) - user->D*(yi - user->ws))/user->dy;
305c4762a1bSJed Brown       c3pos    = PetscMax(c3,0);
306c4762a1bSJed Brown       c3neg    = PetscMin(c3,0);
307c4762a1bSJed Brown       c5        = (PetscPowScalar((user->lambda*user->ws)/(2*user->H),2)*user->q*(1.0-PetscExpScalar(-t/user->lambda)))/(user->dy*user->dy);
308c4762a1bSJed Brown       col[nc].i = i-1; col[nc].j = j;   val[nc++] = c1pos;
309c4762a1bSJed Brown       col[nc].i = i+1; col[nc].j = j;   val[nc++] = -c1neg;
310c4762a1bSJed Brown       col[nc].i = i;   col[nc].j = j-1; val[nc++] = c3pos + c5;
311c4762a1bSJed Brown       col[nc].i = i;   col[nc].j = j+1; val[nc++] = -c3neg + c5;
312c4762a1bSJed Brown       col[nc].i = i;   col[nc].j = j;   val[nc++] = -c1pos + c1neg -c3pos + c3neg -2*c5 -a;
313*5f80ce2aSJacob Faibussowitsch       CHKERRQ(MatSetValuesStencil(Jpre,1,&row,nc,col,val,INSERT_VALUES));
314c4762a1bSJed Brown     }
315c4762a1bSJed Brown   }
316*5f80ce2aSJacob Faibussowitsch   CHKERRQ(DMDAVecRestoreArrayRead(cda,gc,&coors));
317c4762a1bSJed Brown 
318*5f80ce2aSJacob Faibussowitsch   CHKERRQ(MatAssemblyBegin(Jpre,MAT_FINAL_ASSEMBLY));
319*5f80ce2aSJacob Faibussowitsch   CHKERRQ(MatAssemblyEnd(Jpre,MAT_FINAL_ASSEMBLY));
320c4762a1bSJed Brown   if (J != Jpre) {
321*5f80ce2aSJacob Faibussowitsch     CHKERRQ(MatAssemblyBegin(J,MAT_FINAL_ASSEMBLY));
322*5f80ce2aSJacob Faibussowitsch     CHKERRQ(MatAssemblyEnd(J,MAT_FINAL_ASSEMBLY));
323c4762a1bSJed Brown   }
324c4762a1bSJed Brown   PetscFunctionReturn(0);
325c4762a1bSJed Brown }
326c4762a1bSJed Brown 
327c4762a1bSJed Brown PetscErrorCode Parameter_settings(AppCtx *user)
328c4762a1bSJed Brown {
329c4762a1bSJed Brown   PetscBool flg;
330c4762a1bSJed Brown 
331c4762a1bSJed Brown   PetscFunctionBeginUser;
332c4762a1bSJed Brown   /* Set default parameters */
333c4762a1bSJed Brown   user->ws     = 1.0;
334c4762a1bSJed Brown   user->H      = 5.0;
335c4762a1bSJed Brown   user->D      = 0.0;
336c4762a1bSJed Brown   user->Pmax = user->Pmax_s  = 2.1;
337c4762a1bSJed Brown   user->PM_min = 1.0;
338c4762a1bSJed Brown   user->lambda = 0.1;
339c4762a1bSJed Brown   user->q      = 1.0;
340c4762a1bSJed Brown   user->mux    = PetscAsinScalar(user->PM_min/user->Pmax);
341c4762a1bSJed Brown   user->sigmax = 0.1;
342c4762a1bSJed Brown   user->sigmay = 0.1;
343c4762a1bSJed Brown   user->rho    = 0.0;
344c4762a1bSJed Brown   user->xmin   = -PETSC_PI;
345c4762a1bSJed Brown   user->xmax   = PETSC_PI;
346c4762a1bSJed Brown   user->bx     = DM_BOUNDARY_PERIODIC;
347c4762a1bSJed Brown   user->by     = DM_BOUNDARY_GHOSTED;
348c4762a1bSJed Brown   user->tf = user->tcl = -1;
349c4762a1bSJed Brown   user->ymin   = -2.0;
350c4762a1bSJed Brown   user->ymax   = 2.0;
351c4762a1bSJed Brown   user->st_width = 1;
352c4762a1bSJed Brown 
353*5f80ce2aSJacob Faibussowitsch   CHKERRQ(PetscOptionsGetScalar(NULL,NULL,"-ws",&user->ws,&flg));
354*5f80ce2aSJacob Faibussowitsch   CHKERRQ(PetscOptionsGetScalar(NULL,NULL,"-Inertia",&user->H,&flg));
355*5f80ce2aSJacob Faibussowitsch   CHKERRQ(PetscOptionsGetScalar(NULL,NULL,"-D",&user->D,&flg));
356*5f80ce2aSJacob Faibussowitsch   CHKERRQ(PetscOptionsGetScalar(NULL,NULL,"-Pmax",&user->Pmax,&flg));
357*5f80ce2aSJacob Faibussowitsch   CHKERRQ(PetscOptionsGetScalar(NULL,NULL,"-PM_min",&user->PM_min,&flg));
358*5f80ce2aSJacob Faibussowitsch   CHKERRQ(PetscOptionsGetScalar(NULL,NULL,"-lambda",&user->lambda,&flg));
359*5f80ce2aSJacob Faibussowitsch   CHKERRQ(PetscOptionsGetScalar(NULL,NULL,"-q",&user->q,&flg));
360*5f80ce2aSJacob Faibussowitsch   CHKERRQ(PetscOptionsGetScalar(NULL,NULL,"-mux",&user->mux,&flg));
361*5f80ce2aSJacob Faibussowitsch   CHKERRQ(PetscOptionsGetScalar(NULL,NULL,"-muy",&user->muy,&flg));
362*5f80ce2aSJacob Faibussowitsch   if (flg == 0) user->muy = user->ws;
363*5f80ce2aSJacob Faibussowitsch   CHKERRQ(PetscOptionsGetScalar(NULL,NULL,"-xmin",&user->xmin,&flg));
364*5f80ce2aSJacob Faibussowitsch   CHKERRQ(PetscOptionsGetScalar(NULL,NULL,"-xmax",&user->xmax,&flg));
365*5f80ce2aSJacob Faibussowitsch   CHKERRQ(PetscOptionsGetScalar(NULL,NULL,"-ymin",&user->ymin,&flg));
366*5f80ce2aSJacob Faibussowitsch   CHKERRQ(PetscOptionsGetScalar(NULL,NULL,"-ymax",&user->ymax,&flg));
367*5f80ce2aSJacob Faibussowitsch   CHKERRQ(PetscOptionsGetInt(NULL,NULL,"-stencil_width",&user->st_width,&flg));
368*5f80ce2aSJacob Faibussowitsch   CHKERRQ(PetscOptionsGetEnum(NULL,NULL,"-bx",DMBoundaryTypes,(PetscEnum*)&user->bx,&flg));
369*5f80ce2aSJacob Faibussowitsch   CHKERRQ(PetscOptionsGetEnum(NULL,NULL,"-by",DMBoundaryTypes,(PetscEnum*)&user->by,&flg));
370*5f80ce2aSJacob Faibussowitsch   CHKERRQ(PetscOptionsGetReal(NULL,NULL,"-tf",&user->tf,&flg));
371*5f80ce2aSJacob Faibussowitsch   CHKERRQ(PetscOptionsGetReal(NULL,NULL,"-tcl",&user->tcl,&flg));
372c4762a1bSJed Brown   PetscFunctionReturn(0);
373c4762a1bSJed Brown }
374c4762a1bSJed Brown 
375c4762a1bSJed Brown /*TEST
376c4762a1bSJed Brown 
377c4762a1bSJed Brown    build:
378c4762a1bSJed Brown       requires: !complex x
379c4762a1bSJed Brown 
380c4762a1bSJed Brown    test:
381c4762a1bSJed Brown       args: -ts_max_steps 1
382c4762a1bSJed Brown       localrunfiles: petscopt_ex8
383c4762a1bSJed Brown       timeoutfactor: 3
384c4762a1bSJed Brown 
385c4762a1bSJed Brown TEST*/
386