1c4762a1bSJed Brown static char help[] = "Time-dependent PDE in 2d for calculating joint PDF. \n"; 2c4762a1bSJed Brown /* 3c4762a1bSJed Brown p_t = -x_t*p_x -y_t*p_y + f(t)*p_yy 4c4762a1bSJed Brown xmin < x < xmax, ymin < y < ymax; 5c4762a1bSJed Brown 6c4762a1bSJed Brown Boundary conditions: 7c4762a1bSJed Brown Zero dirichlet in y using ghosted values 8c4762a1bSJed Brown Periodic in x 9c4762a1bSJed Brown 10c4762a1bSJed Brown Note that x_t and y_t in the above are given functions of x and y; they are not derivatives of x and y. 11c4762a1bSJed Brown x_t = (y - ws) 12c4762a1bSJed Brown y_t = (ws/2H)*(Pm - Pmax*sin(x) - D*(w - ws)) 13c4762a1bSJed Brown 14c4762a1bSJed Brown In this example, we can see the effect of a fault, that zeroes the electrical power output 15c4762a1bSJed Brown Pmax*sin(x), on the PDF. The fault on/off times can be controlled by options -tf and -tcl respectively. 16c4762a1bSJed Brown 17c4762a1bSJed Brown */ 18c4762a1bSJed Brown 19c4762a1bSJed Brown #include <petscdm.h> 20c4762a1bSJed Brown #include <petscdmda.h> 21c4762a1bSJed Brown #include <petscts.h> 22c4762a1bSJed Brown 23c4762a1bSJed Brown /* 24c4762a1bSJed Brown User-defined data structures and routines 25c4762a1bSJed Brown */ 26c4762a1bSJed Brown typedef struct { 27c4762a1bSJed Brown PetscScalar ws; /* Synchronous speed */ 28c4762a1bSJed Brown PetscScalar H; /* Inertia constant */ 29c4762a1bSJed Brown PetscScalar D; /* Damping constant */ 30c4762a1bSJed Brown PetscScalar Pmax,Pmax_s; /* Maximum power output of generator */ 31c4762a1bSJed Brown PetscScalar PM_min; /* Mean mechanical power input */ 32c4762a1bSJed Brown PetscScalar lambda; /* correlation time */ 33c4762a1bSJed Brown PetscScalar q; /* noise strength */ 34c4762a1bSJed Brown PetscScalar mux; /* Initial average angle */ 35c4762a1bSJed Brown PetscScalar sigmax; /* Standard deviation of initial angle */ 36c4762a1bSJed Brown PetscScalar muy; /* Average speed */ 37c4762a1bSJed Brown PetscScalar sigmay; /* standard deviation of initial speed */ 38c4762a1bSJed Brown PetscScalar rho; /* Cross-correlation coefficient */ 39c4762a1bSJed Brown PetscScalar xmin; /* left boundary of angle */ 40c4762a1bSJed Brown PetscScalar xmax; /* right boundary of angle */ 41c4762a1bSJed Brown PetscScalar ymin; /* bottom boundary of speed */ 42c4762a1bSJed Brown PetscScalar ymax; /* top boundary of speed */ 43c4762a1bSJed Brown PetscScalar dx; /* x step size */ 44c4762a1bSJed Brown PetscScalar dy; /* y step size */ 45c4762a1bSJed Brown PetscScalar disper_coe; /* Dispersion coefficient */ 46c4762a1bSJed Brown DM da; 47c4762a1bSJed Brown PetscInt st_width; /* Stencil width */ 48c4762a1bSJed Brown DMBoundaryType bx; /* x boundary type */ 49c4762a1bSJed Brown DMBoundaryType by; /* y boundary type */ 50c4762a1bSJed Brown PetscReal tf,tcl; /* Fault incidence and clearing times */ 51c4762a1bSJed Brown } AppCtx; 52c4762a1bSJed Brown 53c4762a1bSJed Brown PetscErrorCode Parameter_settings(AppCtx*); 54c4762a1bSJed Brown PetscErrorCode ini_bou(Vec,AppCtx*); 55c4762a1bSJed Brown PetscErrorCode IFunction(TS,PetscReal,Vec,Vec,Vec,void*); 56c4762a1bSJed Brown PetscErrorCode IJacobian(TS,PetscReal,Vec,Vec,PetscReal,Mat,Mat,void*); 57c4762a1bSJed Brown PetscErrorCode PostStep(TS); 58c4762a1bSJed Brown 59c4762a1bSJed Brown int main(int argc, char **argv) 60c4762a1bSJed Brown { 61c4762a1bSJed Brown PetscErrorCode ierr; 62c4762a1bSJed Brown Vec x; /* Solution vector */ 63c4762a1bSJed Brown TS ts; /* Time-stepping context */ 64c4762a1bSJed Brown AppCtx user; /* Application context */ 65c4762a1bSJed Brown PetscViewer viewer; 66c4762a1bSJed Brown 67c4762a1bSJed Brown ierr = PetscInitialize(&argc,&argv,"petscopt_ex8", help);if (ierr) return ierr; 68c4762a1bSJed Brown 69c4762a1bSJed Brown /* Get physics and time parameters */ 70*5f80ce2aSJacob Faibussowitsch CHKERRQ(Parameter_settings(&user)); 71c4762a1bSJed Brown /* Create a 2D DA with dof = 1 */ 72*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMDACreate2d(PETSC_COMM_WORLD,user.bx,user.by,DMDA_STENCIL_STAR,4,4,PETSC_DECIDE,PETSC_DECIDE,1,user.st_width,NULL,NULL,&user.da)); 73*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMSetFromOptions(user.da)); 74*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMSetUp(user.da)); 75c4762a1bSJed Brown /* Set x and y coordinates */ 76*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMDASetUniformCoordinates(user.da,user.xmin,user.xmax,user.ymin,user.ymax,0,0)); 77*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMDASetCoordinateName(user.da,0,"X - the angle")); 78*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMDASetCoordinateName(user.da,1,"Y - the speed")); 79c4762a1bSJed Brown 80c4762a1bSJed Brown /* Get global vector x from DM */ 81*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMCreateGlobalVector(user.da,&x)); 82c4762a1bSJed Brown 83*5f80ce2aSJacob Faibussowitsch CHKERRQ(ini_bou(x,&user)); 84*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscViewerBinaryOpen(PETSC_COMM_WORLD,"ini_x",FILE_MODE_WRITE,&viewer)); 85*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecView(x,viewer)); 86*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscViewerDestroy(&viewer)); 87c4762a1bSJed Brown 88*5f80ce2aSJacob Faibussowitsch CHKERRQ(TSCreate(PETSC_COMM_WORLD,&ts)); 89*5f80ce2aSJacob Faibussowitsch CHKERRQ(TSSetDM(ts,user.da)); 90*5f80ce2aSJacob Faibussowitsch CHKERRQ(TSSetProblemType(ts,TS_NONLINEAR)); 91*5f80ce2aSJacob Faibussowitsch CHKERRQ(TSSetType(ts,TSARKIMEX)); 92*5f80ce2aSJacob Faibussowitsch CHKERRQ(TSSetIFunction(ts,NULL,IFunction,&user)); 93*5f80ce2aSJacob Faibussowitsch /* CHKERRQ(TSSetIJacobian(ts,NULL,NULL,IJacobian,&user)); */ 94*5f80ce2aSJacob Faibussowitsch CHKERRQ(TSSetApplicationContext(ts,&user)); 95*5f80ce2aSJacob Faibussowitsch CHKERRQ(TSSetTimeStep(ts,.005)); 96*5f80ce2aSJacob Faibussowitsch CHKERRQ(TSSetFromOptions(ts)); 97*5f80ce2aSJacob Faibussowitsch CHKERRQ(TSSetPostStep(ts,PostStep)); 98*5f80ce2aSJacob Faibussowitsch CHKERRQ(TSSolve(ts,x)); 99c4762a1bSJed Brown 100*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscViewerBinaryOpen(PETSC_COMM_WORLD,"fin_x",FILE_MODE_WRITE,&viewer)); 101*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecView(x,viewer)); 102*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscViewerDestroy(&viewer)); 103c4762a1bSJed Brown 104*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecDestroy(&x)); 105*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMDestroy(&user.da)); 106*5f80ce2aSJacob Faibussowitsch CHKERRQ(TSDestroy(&ts)); 107c4762a1bSJed Brown ierr = PetscFinalize(); 108c4762a1bSJed Brown return ierr; 109c4762a1bSJed Brown } 110c4762a1bSJed Brown 111c4762a1bSJed Brown PetscErrorCode PostStep(TS ts) 112c4762a1bSJed Brown { 113c4762a1bSJed Brown Vec X; 114c4762a1bSJed Brown AppCtx *user; 115c4762a1bSJed Brown PetscReal t; 116c4762a1bSJed Brown PetscScalar asum; 117c4762a1bSJed Brown 118c4762a1bSJed Brown PetscFunctionBegin; 119*5f80ce2aSJacob Faibussowitsch CHKERRQ(TSGetApplicationContext(ts,&user)); 120*5f80ce2aSJacob Faibussowitsch CHKERRQ(TSGetTime(ts,&t)); 121*5f80ce2aSJacob Faibussowitsch CHKERRQ(TSGetSolution(ts,&X)); 122c4762a1bSJed Brown /* 123c4762a1bSJed Brown if (t >= .2) { 124*5f80ce2aSJacob Faibussowitsch CHKERRQ(TSGetSolution(ts,&X)); 125*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecView(X,PETSC_VIEWER_BINARY_WORLD)); 126c4762a1bSJed Brown exit(0); 127c4762a1bSJed Brown results in initial conditions after fault in binaryoutput 128c4762a1bSJed Brown }*/ 129c4762a1bSJed Brown 130c4762a1bSJed Brown if ((t > user->tf) && (t < user->tcl)) user->Pmax = 0.0; /* A short-circuit that drives the electrical power output (Pmax*sin(delta)) to zero */ 131c4762a1bSJed Brown else user->Pmax = user->Pmax_s; 132c4762a1bSJed Brown 133*5f80ce2aSJacob Faibussowitsch CHKERRQ(VecSum(X,&asum)); 134*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscPrintf(PETSC_COMM_WORLD,"sum(p) at t = %f = %f\n",(double)t,(double)(asum))); 135c4762a1bSJed Brown PetscFunctionReturn(0); 136c4762a1bSJed Brown } 137c4762a1bSJed Brown 138c4762a1bSJed Brown PetscErrorCode ini_bou(Vec X,AppCtx* user) 139c4762a1bSJed Brown { 140c4762a1bSJed Brown DM cda; 141c4762a1bSJed Brown DMDACoor2d **coors; 142c4762a1bSJed Brown PetscScalar **p; 143c4762a1bSJed Brown Vec gc; 144c4762a1bSJed Brown PetscInt M,N,Ir,J; 145c4762a1bSJed Brown PetscMPIInt rank; 146c4762a1bSJed Brown 147c4762a1bSJed Brown PetscFunctionBeginUser; 148*5f80ce2aSJacob Faibussowitsch CHKERRMPI(MPI_Comm_rank(PETSC_COMM_WORLD,&rank)); 149*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMDAGetInfo(user->da,NULL,&M,&N,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL)); 150c4762a1bSJed Brown user->dx = (user->xmax - user->xmin)/(M-1); user->dy = (user->ymax - user->ymin)/(N-1); 151*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMGetCoordinateDM(user->da,&cda)); 152*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMGetCoordinates(user->da,&gc)); 153*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMDAVecGetArrayRead(cda,gc,&coors)); 154*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMDAVecGetArray(user->da,X,&p)); 155c4762a1bSJed Brown 156c4762a1bSJed Brown /* Point mass at (mux,muy) */ 157*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscPrintf(PETSC_COMM_WORLD,"Original user->mux = %f, user->muy = %f\n",user->mux,user->muy)); 158*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMDAGetLogicalCoordinate(user->da,user->mux,user->muy,0.0,&Ir,&J,NULL,&user->mux,&user->muy,NULL)); 159c4762a1bSJed Brown user->PM_min = user->Pmax*PetscSinScalar(user->mux); 160*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscPrintf(PETSC_COMM_WORLD,"Corrected user->mux = %f, user->muy = %f user->PM_min = %f,user->dx = %f\n",user->mux,user->muy,user->PM_min,user->dx)); 161c4762a1bSJed Brown if (Ir > -1 && J > -1) { 162c4762a1bSJed Brown p[J][Ir] = 1.0; 163c4762a1bSJed Brown } 164c4762a1bSJed Brown 165*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMDAVecRestoreArrayRead(cda,gc,&coors)); 166*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMDAVecRestoreArray(user->da,X,&p)); 167c4762a1bSJed Brown PetscFunctionReturn(0); 168c4762a1bSJed Brown } 169c4762a1bSJed Brown 170c4762a1bSJed Brown /* First advection term */ 171c4762a1bSJed Brown PetscErrorCode adv1(PetscScalar **p,PetscScalar y,PetscInt i,PetscInt j,PetscInt M,PetscScalar *p1,AppCtx *user) 172c4762a1bSJed Brown { 173c4762a1bSJed Brown PetscScalar f,fpos,fneg; 174c4762a1bSJed Brown PetscFunctionBegin; 175c4762a1bSJed Brown f = (y - user->ws); 176c4762a1bSJed Brown fpos = PetscMax(f,0); 177c4762a1bSJed Brown fneg = PetscMin(f,0); 178c4762a1bSJed Brown if (user->st_width == 1) { 179c4762a1bSJed Brown *p1 = fpos*(p[j][i] - p[j][i-1])/user->dx + fneg*(p[j][i+1] - p[j][i])/user->dx; 180c4762a1bSJed Brown } else if (user->st_width == 2) { 181c4762a1bSJed Brown *p1 = fpos*(3*p[j][i] - 4*p[j][i-1] + p[j][i-2])/(2*user->dx) + fneg*(-p[j][i+2] + 4*p[j][i+1] - 3*p[j][i])/(2*user->dx); 182c4762a1bSJed Brown } else if (user->st_width == 3) { 183c4762a1bSJed Brown *p1 = fpos*(2*p[j][i+1] + 3*p[j][i] - 6*p[j][i-1] + p[j][i-2])/(6*user->dx) + fneg*(-p[j][i+2] + 6*p[j][i+1] - 3*p[j][i] - 2*p[j][i-1])/(6*user->dx); 184c4762a1bSJed Brown } 185c4762a1bSJed Brown /* *p1 = f*(p[j][i+1] - p[j][i-1])/user->dx;*/ 186c4762a1bSJed Brown PetscFunctionReturn(0); 187c4762a1bSJed Brown } 188c4762a1bSJed Brown 189c4762a1bSJed Brown /* Second advection term */ 190c4762a1bSJed Brown PetscErrorCode adv2(PetscScalar **p,PetscScalar x,PetscScalar y,PetscInt i,PetscInt j,PetscInt N,PetscScalar *p2,AppCtx *user) 191c4762a1bSJed Brown { 192c4762a1bSJed Brown PetscScalar f,fpos,fneg; 193c4762a1bSJed Brown PetscFunctionBegin; 194c4762a1bSJed Brown f = (user->ws/(2*user->H))*(user->PM_min - user->Pmax*PetscSinScalar(x) - user->D*(y - user->ws)); 195c4762a1bSJed Brown fpos = PetscMax(f,0); 196c4762a1bSJed Brown fneg = PetscMin(f,0); 197c4762a1bSJed Brown if (user->st_width == 1) { 198c4762a1bSJed Brown *p2 = fpos*(p[j][i] - p[j-1][i])/user->dy + fneg*(p[j+1][i] - p[j][i])/user->dy; 199c4762a1bSJed Brown } else if (user->st_width ==2) { 200c4762a1bSJed Brown *p2 = fpos*(3*p[j][i] - 4*p[j-1][i] + p[j-2][i])/(2*user->dy) + fneg*(-p[j+2][i] + 4*p[j+1][i] - 3*p[j][i])/(2*user->dy); 201c4762a1bSJed Brown } else if (user->st_width == 3) { 202c4762a1bSJed Brown *p2 = fpos*(2*p[j+1][i] + 3*p[j][i] - 6*p[j-1][i] + p[j-2][i])/(6*user->dy) + fneg*(-p[j+2][i] + 6*p[j+1][i] - 3*p[j][i] - 2*p[j-1][i])/(6*user->dy); 203c4762a1bSJed Brown } 204c4762a1bSJed Brown 205c4762a1bSJed Brown /* *p2 = f*(p[j+1][i] - p[j-1][i])/user->dy;*/ 206c4762a1bSJed Brown PetscFunctionReturn(0); 207c4762a1bSJed Brown } 208c4762a1bSJed Brown 209c4762a1bSJed Brown /* Diffusion term */ 210c4762a1bSJed Brown PetscErrorCode diffuse(PetscScalar **p,PetscInt i,PetscInt j,PetscReal t,PetscScalar *p_diff,AppCtx * user) 211c4762a1bSJed Brown { 212c4762a1bSJed Brown PetscFunctionBeginUser; 213c4762a1bSJed Brown if (user->st_width == 1) { 214c4762a1bSJed Brown *p_diff = user->disper_coe*((p[j-1][i] - 2*p[j][i] + p[j+1][i])/(user->dy*user->dy)); 215c4762a1bSJed Brown } else if (user->st_width == 2) { 216c4762a1bSJed Brown *p_diff = user->disper_coe*((-p[j-2][i] + 16*p[j-1][i] - 30*p[j][i] + 16*p[j+1][i] - p[j+2][i])/(12.0*user->dy*user->dy)); 217c4762a1bSJed Brown } else if (user->st_width == 3) { 218c4762a1bSJed Brown *p_diff = user->disper_coe*((2*p[j-3][i] - 27*p[j-2][i] + 270*p[j-1][i] - 490*p[j][i] + 270*p[j+1][i] - 27*p[j+2][i] + 2*p[j+3][i])/(180.0*user->dy*user->dy)); 219c4762a1bSJed Brown } 220c4762a1bSJed Brown PetscFunctionReturn(0); 221c4762a1bSJed Brown } 222c4762a1bSJed Brown 223c4762a1bSJed Brown PetscErrorCode IFunction(TS ts,PetscReal t,Vec X,Vec Xdot,Vec F,void *ctx) 224c4762a1bSJed Brown { 225c4762a1bSJed Brown AppCtx *user = (AppCtx*)ctx; 226c4762a1bSJed Brown DM cda; 227c4762a1bSJed Brown DMDACoor2d **coors; 228c4762a1bSJed Brown PetscScalar **p,**f,**pdot; 229c4762a1bSJed Brown PetscInt i,j; 230c4762a1bSJed Brown PetscInt xs,ys,xm,ym,M,N; 231c4762a1bSJed Brown Vec localX,gc,localXdot; 232c4762a1bSJed Brown PetscScalar p_adv1 = 0.0,p_adv2 = 0.0,p_diff = 0; 233c4762a1bSJed Brown PetscScalar diffuse1,gamma; 234c4762a1bSJed Brown 235c4762a1bSJed Brown PetscFunctionBeginUser; 236*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMDAGetInfo(user->da,NULL,&M,&N,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL)); 237*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMGetCoordinateDM(user->da,&cda)); 238*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMDAGetCorners(cda,&xs,&ys,0,&xm,&ym,0)); 239c4762a1bSJed Brown 240*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMGetLocalVector(user->da,&localX)); 241*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMGetLocalVector(user->da,&localXdot)); 242c4762a1bSJed Brown 243*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMGlobalToLocalBegin(user->da,X,INSERT_VALUES,localX)); 244*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMGlobalToLocalEnd(user->da,X,INSERT_VALUES,localX)); 245*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMGlobalToLocalBegin(user->da,Xdot,INSERT_VALUES,localXdot)); 246*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMGlobalToLocalEnd(user->da,Xdot,INSERT_VALUES,localXdot)); 247c4762a1bSJed Brown 248*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMGetCoordinatesLocal(user->da,&gc)); 249c4762a1bSJed Brown 250*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMDAVecGetArrayRead(cda,gc,&coors)); 251*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMDAVecGetArrayRead(user->da,localX,&p)); 252*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMDAVecGetArrayRead(user->da,localXdot,&pdot)); 253*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMDAVecGetArray(user->da,F,&f)); 254c4762a1bSJed Brown 255c4762a1bSJed Brown gamma = user->D*user->ws/(2*user->H); 256c4762a1bSJed Brown diffuse1 = user->lambda*user->lambda*user->q/(user->lambda*gamma+1)*(1.0 - PetscExpScalar(-t*(gamma+1.0)/user->lambda)); 257c4762a1bSJed Brown user->disper_coe = user->ws*user->ws/(4*user->H*user->H)*diffuse1; 258c4762a1bSJed Brown 259c4762a1bSJed Brown for (i=xs; i < xs+xm; i++) { 260c4762a1bSJed Brown for (j=ys; j < ys+ym; j++) { 261*5f80ce2aSJacob Faibussowitsch CHKERRQ(adv1(p,coors[j][i].y,i,j,M,&p_adv1,user)); 262*5f80ce2aSJacob Faibussowitsch CHKERRQ(adv2(p,coors[j][i].x,coors[j][i].y,i,j,N,&p_adv2,user)); 263*5f80ce2aSJacob Faibussowitsch CHKERRQ(diffuse(p,i,j,t,&p_diff,user)); 264c4762a1bSJed Brown f[j][i] = -p_adv1 - p_adv2 + p_diff - pdot[j][i]; 265c4762a1bSJed Brown } 266c4762a1bSJed Brown } 267*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMDAVecRestoreArrayRead(user->da,localX,&p)); 268*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMDAVecRestoreArrayRead(user->da,localX,&pdot)); 269*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMRestoreLocalVector(user->da,&localX)); 270*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMRestoreLocalVector(user->da,&localXdot)); 271*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMDAVecRestoreArray(user->da,F,&f)); 272*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMDAVecRestoreArrayRead(cda,gc,&coors)); 273c4762a1bSJed Brown 274c4762a1bSJed Brown PetscFunctionReturn(0); 275c4762a1bSJed Brown } 276c4762a1bSJed Brown 277c4762a1bSJed Brown PetscErrorCode IJacobian(TS ts,PetscReal t,Vec X,Vec Xdot,PetscReal a,Mat J,Mat Jpre,void *ctx) 278c4762a1bSJed Brown { 279c4762a1bSJed Brown AppCtx *user=(AppCtx*)ctx; 280c4762a1bSJed Brown DM cda; 281c4762a1bSJed Brown DMDACoor2d **coors; 282c4762a1bSJed Brown PetscInt i,j; 283c4762a1bSJed Brown PetscInt xs,ys,xm,ym,M,N; 284c4762a1bSJed Brown Vec gc; 285c4762a1bSJed Brown PetscScalar val[5],xi,yi; 286c4762a1bSJed Brown MatStencil row,col[5]; 287c4762a1bSJed Brown PetscScalar c1,c3,c5,c1pos,c1neg,c3pos,c3neg; 288c4762a1bSJed Brown 289c4762a1bSJed Brown PetscFunctionBeginUser; 290*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMDAGetInfo(user->da,NULL,&M,&N,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL)); 291*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMGetCoordinateDM(user->da,&cda)); 292*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMDAGetCorners(cda,&xs,&ys,0,&xm,&ym,0)); 293c4762a1bSJed Brown 294*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMGetCoordinatesLocal(user->da,&gc)); 295*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMDAVecGetArrayRead(cda,gc,&coors)); 296c4762a1bSJed Brown for (i=xs; i < xs+xm; i++) { 297c4762a1bSJed Brown for (j=ys; j < ys+ym; j++) { 298c4762a1bSJed Brown PetscInt nc = 0; 299c4762a1bSJed Brown xi = coors[j][i].x; yi = coors[j][i].y; 300c4762a1bSJed Brown row.i = i; row.j = j; 301c4762a1bSJed Brown c1 = (yi-user->ws)/user->dx; 302c4762a1bSJed Brown c1pos = PetscMax(c1,0); 303c4762a1bSJed Brown c1neg = PetscMin(c1,0); 304c4762a1bSJed Brown c3 = (user->ws/(2.0*user->H))*(user->PM_min - user->Pmax*PetscSinScalar(xi) - user->D*(yi - user->ws))/user->dy; 305c4762a1bSJed Brown c3pos = PetscMax(c3,0); 306c4762a1bSJed Brown c3neg = PetscMin(c3,0); 307c4762a1bSJed Brown c5 = (PetscPowScalar((user->lambda*user->ws)/(2*user->H),2)*user->q*(1.0-PetscExpScalar(-t/user->lambda)))/(user->dy*user->dy); 308c4762a1bSJed Brown col[nc].i = i-1; col[nc].j = j; val[nc++] = c1pos; 309c4762a1bSJed Brown col[nc].i = i+1; col[nc].j = j; val[nc++] = -c1neg; 310c4762a1bSJed Brown col[nc].i = i; col[nc].j = j-1; val[nc++] = c3pos + c5; 311c4762a1bSJed Brown col[nc].i = i; col[nc].j = j+1; val[nc++] = -c3neg + c5; 312c4762a1bSJed Brown col[nc].i = i; col[nc].j = j; val[nc++] = -c1pos + c1neg -c3pos + c3neg -2*c5 -a; 313*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatSetValuesStencil(Jpre,1,&row,nc,col,val,INSERT_VALUES)); 314c4762a1bSJed Brown } 315c4762a1bSJed Brown } 316*5f80ce2aSJacob Faibussowitsch CHKERRQ(DMDAVecRestoreArrayRead(cda,gc,&coors)); 317c4762a1bSJed Brown 318*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatAssemblyBegin(Jpre,MAT_FINAL_ASSEMBLY)); 319*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatAssemblyEnd(Jpre,MAT_FINAL_ASSEMBLY)); 320c4762a1bSJed Brown if (J != Jpre) { 321*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatAssemblyBegin(J,MAT_FINAL_ASSEMBLY)); 322*5f80ce2aSJacob Faibussowitsch CHKERRQ(MatAssemblyEnd(J,MAT_FINAL_ASSEMBLY)); 323c4762a1bSJed Brown } 324c4762a1bSJed Brown PetscFunctionReturn(0); 325c4762a1bSJed Brown } 326c4762a1bSJed Brown 327c4762a1bSJed Brown PetscErrorCode Parameter_settings(AppCtx *user) 328c4762a1bSJed Brown { 329c4762a1bSJed Brown PetscBool flg; 330c4762a1bSJed Brown 331c4762a1bSJed Brown PetscFunctionBeginUser; 332c4762a1bSJed Brown /* Set default parameters */ 333c4762a1bSJed Brown user->ws = 1.0; 334c4762a1bSJed Brown user->H = 5.0; 335c4762a1bSJed Brown user->D = 0.0; 336c4762a1bSJed Brown user->Pmax = user->Pmax_s = 2.1; 337c4762a1bSJed Brown user->PM_min = 1.0; 338c4762a1bSJed Brown user->lambda = 0.1; 339c4762a1bSJed Brown user->q = 1.0; 340c4762a1bSJed Brown user->mux = PetscAsinScalar(user->PM_min/user->Pmax); 341c4762a1bSJed Brown user->sigmax = 0.1; 342c4762a1bSJed Brown user->sigmay = 0.1; 343c4762a1bSJed Brown user->rho = 0.0; 344c4762a1bSJed Brown user->xmin = -PETSC_PI; 345c4762a1bSJed Brown user->xmax = PETSC_PI; 346c4762a1bSJed Brown user->bx = DM_BOUNDARY_PERIODIC; 347c4762a1bSJed Brown user->by = DM_BOUNDARY_GHOSTED; 348c4762a1bSJed Brown user->tf = user->tcl = -1; 349c4762a1bSJed Brown user->ymin = -2.0; 350c4762a1bSJed Brown user->ymax = 2.0; 351c4762a1bSJed Brown user->st_width = 1; 352c4762a1bSJed Brown 353*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscOptionsGetScalar(NULL,NULL,"-ws",&user->ws,&flg)); 354*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscOptionsGetScalar(NULL,NULL,"-Inertia",&user->H,&flg)); 355*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscOptionsGetScalar(NULL,NULL,"-D",&user->D,&flg)); 356*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscOptionsGetScalar(NULL,NULL,"-Pmax",&user->Pmax,&flg)); 357*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscOptionsGetScalar(NULL,NULL,"-PM_min",&user->PM_min,&flg)); 358*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscOptionsGetScalar(NULL,NULL,"-lambda",&user->lambda,&flg)); 359*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscOptionsGetScalar(NULL,NULL,"-q",&user->q,&flg)); 360*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscOptionsGetScalar(NULL,NULL,"-mux",&user->mux,&flg)); 361*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscOptionsGetScalar(NULL,NULL,"-muy",&user->muy,&flg)); 362*5f80ce2aSJacob Faibussowitsch if (flg == 0) user->muy = user->ws; 363*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscOptionsGetScalar(NULL,NULL,"-xmin",&user->xmin,&flg)); 364*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscOptionsGetScalar(NULL,NULL,"-xmax",&user->xmax,&flg)); 365*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscOptionsGetScalar(NULL,NULL,"-ymin",&user->ymin,&flg)); 366*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscOptionsGetScalar(NULL,NULL,"-ymax",&user->ymax,&flg)); 367*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscOptionsGetInt(NULL,NULL,"-stencil_width",&user->st_width,&flg)); 368*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscOptionsGetEnum(NULL,NULL,"-bx",DMBoundaryTypes,(PetscEnum*)&user->bx,&flg)); 369*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscOptionsGetEnum(NULL,NULL,"-by",DMBoundaryTypes,(PetscEnum*)&user->by,&flg)); 370*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscOptionsGetReal(NULL,NULL,"-tf",&user->tf,&flg)); 371*5f80ce2aSJacob Faibussowitsch CHKERRQ(PetscOptionsGetReal(NULL,NULL,"-tcl",&user->tcl,&flg)); 372c4762a1bSJed Brown PetscFunctionReturn(0); 373c4762a1bSJed Brown } 374c4762a1bSJed Brown 375c4762a1bSJed Brown /*TEST 376c4762a1bSJed Brown 377c4762a1bSJed Brown build: 378c4762a1bSJed Brown requires: !complex x 379c4762a1bSJed Brown 380c4762a1bSJed Brown test: 381c4762a1bSJed Brown args: -ts_max_steps 1 382c4762a1bSJed Brown localrunfiles: petscopt_ex8 383c4762a1bSJed Brown timeoutfactor: 3 384c4762a1bSJed Brown 385c4762a1bSJed Brown TEST*/ 386