xref: /petsc/src/ts/tutorials/power_grid/ex8.c (revision c4762a1b19cd2af06abeed90e8f9d34fb975dd94)
1*c4762a1bSJed Brown static char help[] = "Time-dependent PDE in 2d for calculating joint PDF. \n";
2*c4762a1bSJed Brown /*
3*c4762a1bSJed Brown    p_t = -x_t*p_x -y_t*p_y + f(t)*p_yy
4*c4762a1bSJed Brown    xmin < x < xmax, ymin < y < ymax;
5*c4762a1bSJed Brown 
6*c4762a1bSJed Brown    Boundary conditions:
7*c4762a1bSJed Brown    Zero dirichlet in y using ghosted values
8*c4762a1bSJed Brown    Periodic in x
9*c4762a1bSJed Brown 
10*c4762a1bSJed Brown    Note that x_t and y_t in the above are given functions of x and y; they are not derivatives of x and y.
11*c4762a1bSJed Brown    x_t = (y - ws)
12*c4762a1bSJed Brown    y_t = (ws/2H)*(Pm - Pmax*sin(x) - D*(w - ws))
13*c4762a1bSJed Brown 
14*c4762a1bSJed Brown    In this example, we can see the effect of a fault, that zeroes the electrical power output
15*c4762a1bSJed Brown    Pmax*sin(x), on the PDF. The fault on/off times can be controlled by options -tf and -tcl respectively.
16*c4762a1bSJed Brown 
17*c4762a1bSJed Brown */
18*c4762a1bSJed Brown 
19*c4762a1bSJed Brown #include <petscdm.h>
20*c4762a1bSJed Brown #include <petscdmda.h>
21*c4762a1bSJed Brown #include <petscts.h>
22*c4762a1bSJed Brown 
23*c4762a1bSJed Brown /*
24*c4762a1bSJed Brown    User-defined data structures and routines
25*c4762a1bSJed Brown */
26*c4762a1bSJed Brown typedef struct {
27*c4762a1bSJed Brown   PetscScalar ws;   /* Synchronous speed */
28*c4762a1bSJed Brown   PetscScalar H;    /* Inertia constant */
29*c4762a1bSJed Brown   PetscScalar D;    /* Damping constant */
30*c4762a1bSJed Brown   PetscScalar Pmax,Pmax_s; /* Maximum power output of generator */
31*c4762a1bSJed Brown   PetscScalar PM_min; /* Mean mechanical power input */
32*c4762a1bSJed Brown   PetscScalar lambda; /* correlation time */
33*c4762a1bSJed Brown   PetscScalar q;      /* noise strength */
34*c4762a1bSJed Brown   PetscScalar mux;    /* Initial average angle */
35*c4762a1bSJed Brown   PetscScalar sigmax; /* Standard deviation of initial angle */
36*c4762a1bSJed Brown   PetscScalar muy;    /* Average speed */
37*c4762a1bSJed Brown   PetscScalar sigmay; /* standard deviation of initial speed */
38*c4762a1bSJed Brown   PetscScalar rho;    /* Cross-correlation coefficient */
39*c4762a1bSJed Brown   PetscScalar xmin;   /* left boundary of angle */
40*c4762a1bSJed Brown   PetscScalar xmax;   /* right boundary of angle */
41*c4762a1bSJed Brown   PetscScalar ymin;   /* bottom boundary of speed */
42*c4762a1bSJed Brown   PetscScalar ymax;   /* top boundary of speed */
43*c4762a1bSJed Brown   PetscScalar dx;     /* x step size */
44*c4762a1bSJed Brown   PetscScalar dy;     /* y step size */
45*c4762a1bSJed Brown   PetscScalar disper_coe; /* Dispersion coefficient */
46*c4762a1bSJed Brown   DM          da;
47*c4762a1bSJed Brown   PetscInt    st_width; /* Stencil width */
48*c4762a1bSJed Brown   DMBoundaryType bx; /* x boundary type */
49*c4762a1bSJed Brown   DMBoundaryType by; /* y boundary type */
50*c4762a1bSJed Brown   PetscReal        tf,tcl; /* Fault incidence and clearing times */
51*c4762a1bSJed Brown } AppCtx;
52*c4762a1bSJed Brown 
53*c4762a1bSJed Brown PetscErrorCode Parameter_settings(AppCtx*);
54*c4762a1bSJed Brown PetscErrorCode ini_bou(Vec,AppCtx*);
55*c4762a1bSJed Brown PetscErrorCode IFunction(TS,PetscReal,Vec,Vec,Vec,void*);
56*c4762a1bSJed Brown PetscErrorCode IJacobian(TS,PetscReal,Vec,Vec,PetscReal,Mat,Mat,void*);
57*c4762a1bSJed Brown PetscErrorCode PostStep(TS);
58*c4762a1bSJed Brown 
59*c4762a1bSJed Brown int main(int argc, char **argv)
60*c4762a1bSJed Brown {
61*c4762a1bSJed Brown   PetscErrorCode ierr;
62*c4762a1bSJed Brown   Vec            x;  /* Solution vector */
63*c4762a1bSJed Brown   TS             ts;   /* Time-stepping context */
64*c4762a1bSJed Brown   AppCtx         user; /* Application context */
65*c4762a1bSJed Brown   PetscViewer    viewer;
66*c4762a1bSJed Brown 
67*c4762a1bSJed Brown   ierr = PetscInitialize(&argc,&argv,"petscopt_ex8", help);if (ierr) return ierr;
68*c4762a1bSJed Brown 
69*c4762a1bSJed Brown   /* Get physics and time parameters */
70*c4762a1bSJed Brown   ierr = Parameter_settings(&user);CHKERRQ(ierr);
71*c4762a1bSJed Brown   /* Create a 2D DA with dof = 1 */
72*c4762a1bSJed Brown   ierr = DMDACreate2d(PETSC_COMM_WORLD,user.bx,user.by,DMDA_STENCIL_STAR,4,4,PETSC_DECIDE,PETSC_DECIDE,1,user.st_width,NULL,NULL,&user.da);CHKERRQ(ierr);
73*c4762a1bSJed Brown   ierr = DMSetFromOptions(user.da);CHKERRQ(ierr);
74*c4762a1bSJed Brown   ierr = DMSetUp(user.da);CHKERRQ(ierr);
75*c4762a1bSJed Brown   /* Set x and y coordinates */
76*c4762a1bSJed Brown   ierr = DMDASetUniformCoordinates(user.da,user.xmin,user.xmax,user.ymin,user.ymax,0,0);CHKERRQ(ierr);
77*c4762a1bSJed Brown   ierr = DMDASetCoordinateName(user.da,0,"X - the angle");CHKERRQ(ierr);
78*c4762a1bSJed Brown   ierr = DMDASetCoordinateName(user.da,1,"Y - the speed");CHKERRQ(ierr);
79*c4762a1bSJed Brown 
80*c4762a1bSJed Brown   /* Get global vector x from DM  */
81*c4762a1bSJed Brown   ierr = DMCreateGlobalVector(user.da,&x);CHKERRQ(ierr);
82*c4762a1bSJed Brown 
83*c4762a1bSJed Brown   ierr = ini_bou(x,&user);CHKERRQ(ierr);
84*c4762a1bSJed Brown   ierr = PetscViewerBinaryOpen(PETSC_COMM_WORLD,"ini_x",FILE_MODE_WRITE,&viewer);CHKERRQ(ierr);
85*c4762a1bSJed Brown   ierr = VecView(x,viewer);CHKERRQ(ierr);
86*c4762a1bSJed Brown   ierr = PetscViewerDestroy(&viewer);CHKERRQ(ierr);
87*c4762a1bSJed Brown 
88*c4762a1bSJed Brown   ierr = TSCreate(PETSC_COMM_WORLD,&ts);CHKERRQ(ierr);
89*c4762a1bSJed Brown   ierr = TSSetDM(ts,user.da);CHKERRQ(ierr);
90*c4762a1bSJed Brown   ierr = TSSetProblemType(ts,TS_NONLINEAR);CHKERRQ(ierr);
91*c4762a1bSJed Brown   ierr = TSSetType(ts,TSARKIMEX);CHKERRQ(ierr);
92*c4762a1bSJed Brown   ierr = TSSetIFunction(ts,NULL,IFunction,&user);CHKERRQ(ierr);
93*c4762a1bSJed Brown   /*  ierr = TSSetIJacobian(ts,NULL,NULL,IJacobian,&user);CHKERRQ(ierr); */
94*c4762a1bSJed Brown   ierr = TSSetApplicationContext(ts,&user);CHKERRQ(ierr);
95*c4762a1bSJed Brown   ierr = TSSetTimeStep(ts,.005);CHKERRQ(ierr);
96*c4762a1bSJed Brown   ierr = TSSetFromOptions(ts);CHKERRQ(ierr);
97*c4762a1bSJed Brown   ierr = TSSetPostStep(ts,PostStep);CHKERRQ(ierr);
98*c4762a1bSJed Brown   ierr = TSSolve(ts,x);CHKERRQ(ierr);
99*c4762a1bSJed Brown 
100*c4762a1bSJed Brown   ierr = PetscViewerBinaryOpen(PETSC_COMM_WORLD,"fin_x",FILE_MODE_WRITE,&viewer);CHKERRQ(ierr);
101*c4762a1bSJed Brown   ierr = VecView(x,viewer);CHKERRQ(ierr);
102*c4762a1bSJed Brown   ierr = PetscViewerDestroy(&viewer);CHKERRQ(ierr);
103*c4762a1bSJed Brown 
104*c4762a1bSJed Brown   ierr = VecDestroy(&x);CHKERRQ(ierr);
105*c4762a1bSJed Brown   ierr = DMDestroy(&user.da);CHKERRQ(ierr);
106*c4762a1bSJed Brown   ierr = TSDestroy(&ts);CHKERRQ(ierr);
107*c4762a1bSJed Brown   ierr = PetscFinalize();
108*c4762a1bSJed Brown   return ierr;
109*c4762a1bSJed Brown }
110*c4762a1bSJed Brown 
111*c4762a1bSJed Brown PetscErrorCode PostStep(TS ts)
112*c4762a1bSJed Brown {
113*c4762a1bSJed Brown   PetscErrorCode ierr;
114*c4762a1bSJed Brown   Vec            X;
115*c4762a1bSJed Brown   AppCtx         *user;
116*c4762a1bSJed Brown   PetscReal      t;
117*c4762a1bSJed Brown   PetscScalar    asum;
118*c4762a1bSJed Brown 
119*c4762a1bSJed Brown   PetscFunctionBegin;
120*c4762a1bSJed Brown   ierr = TSGetApplicationContext(ts,&user);CHKERRQ(ierr);
121*c4762a1bSJed Brown   ierr = TSGetTime(ts,&t);CHKERRQ(ierr);
122*c4762a1bSJed Brown   ierr = TSGetSolution(ts,&X);CHKERRQ(ierr);
123*c4762a1bSJed Brown   /*
124*c4762a1bSJed Brown   if (t >= .2) {
125*c4762a1bSJed Brown     ierr = TSGetSolution(ts,&X);CHKERRQ(ierr);
126*c4762a1bSJed Brown     ierr = VecView(X,PETSC_VIEWER_BINARY_WORLD);CHKERRQ(ierr);
127*c4762a1bSJed Brown     exit(0);
128*c4762a1bSJed Brown      results in initial conditions after fault in binaryoutput
129*c4762a1bSJed Brown   }*/
130*c4762a1bSJed Brown 
131*c4762a1bSJed Brown   if ((t > user->tf) && (t < user->tcl)) user->Pmax = 0.0; /* A short-circuit that drives the electrical power output (Pmax*sin(delta)) to zero */
132*c4762a1bSJed Brown   else user->Pmax = user->Pmax_s;
133*c4762a1bSJed Brown 
134*c4762a1bSJed Brown   ierr = VecSum(X,&asum);CHKERRQ(ierr);
135*c4762a1bSJed Brown   ierr = PetscPrintf(PETSC_COMM_WORLD,"sum(p) at t = %f = %f\n",(double)t,(double)(asum));CHKERRQ(ierr);
136*c4762a1bSJed Brown   PetscFunctionReturn(0);
137*c4762a1bSJed Brown }
138*c4762a1bSJed Brown 
139*c4762a1bSJed Brown PetscErrorCode ini_bou(Vec X,AppCtx* user)
140*c4762a1bSJed Brown {
141*c4762a1bSJed Brown   PetscErrorCode ierr;
142*c4762a1bSJed Brown   DM             cda;
143*c4762a1bSJed Brown   DMDACoor2d     **coors;
144*c4762a1bSJed Brown   PetscScalar    **p;
145*c4762a1bSJed Brown   Vec            gc;
146*c4762a1bSJed Brown   PetscInt       M,N,Ir,J;
147*c4762a1bSJed Brown   PetscMPIInt    rank;
148*c4762a1bSJed Brown 
149*c4762a1bSJed Brown   PetscFunctionBeginUser;
150*c4762a1bSJed Brown   ierr = MPI_Comm_rank(PETSC_COMM_WORLD,&rank);CHKERRQ(ierr);
151*c4762a1bSJed Brown   ierr = DMDAGetInfo(user->da,NULL,&M,&N,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL);CHKERRQ(ierr);
152*c4762a1bSJed Brown   user->dx = (user->xmax - user->xmin)/(M-1); user->dy = (user->ymax - user->ymin)/(N-1);
153*c4762a1bSJed Brown   ierr = DMGetCoordinateDM(user->da,&cda);CHKERRQ(ierr);
154*c4762a1bSJed Brown   ierr = DMGetCoordinates(user->da,&gc);CHKERRQ(ierr);
155*c4762a1bSJed Brown   ierr = DMDAVecGetArrayRead(cda,gc,&coors);CHKERRQ(ierr);
156*c4762a1bSJed Brown   ierr = DMDAVecGetArray(user->da,X,&p);CHKERRQ(ierr);
157*c4762a1bSJed Brown 
158*c4762a1bSJed Brown   /* Point mass at (mux,muy) */
159*c4762a1bSJed Brown   ierr = PetscPrintf(PETSC_COMM_WORLD,"Original user->mux = %f, user->muy = %f\n",user->mux,user->muy);CHKERRQ(ierr);
160*c4762a1bSJed Brown   ierr = DMDAGetLogicalCoordinate(user->da,user->mux,user->muy,0.0,&Ir,&J,NULL,&user->mux,&user->muy,NULL);CHKERRQ(ierr);
161*c4762a1bSJed Brown   user->PM_min = user->Pmax*PetscSinScalar(user->mux);
162*c4762a1bSJed Brown   ierr = PetscPrintf(PETSC_COMM_WORLD,"Corrected user->mux = %f, user->muy = %f user->PM_min = %f,user->dx = %f\n",user->mux,user->muy,user->PM_min,user->dx);CHKERRQ(ierr);
163*c4762a1bSJed Brown   if (Ir > -1 && J > -1) {
164*c4762a1bSJed Brown     p[J][Ir] = 1.0;
165*c4762a1bSJed Brown   }
166*c4762a1bSJed Brown 
167*c4762a1bSJed Brown   ierr = DMDAVecRestoreArrayRead(cda,gc,&coors);CHKERRQ(ierr);
168*c4762a1bSJed Brown   ierr = DMDAVecRestoreArray(user->da,X,&p);CHKERRQ(ierr);
169*c4762a1bSJed Brown   PetscFunctionReturn(0);
170*c4762a1bSJed Brown }
171*c4762a1bSJed Brown 
172*c4762a1bSJed Brown /* First advection term */
173*c4762a1bSJed Brown PetscErrorCode adv1(PetscScalar **p,PetscScalar y,PetscInt i,PetscInt j,PetscInt M,PetscScalar *p1,AppCtx *user)
174*c4762a1bSJed Brown {
175*c4762a1bSJed Brown   PetscScalar f,fpos,fneg;
176*c4762a1bSJed Brown   PetscFunctionBegin;
177*c4762a1bSJed Brown   f   =  (y - user->ws);
178*c4762a1bSJed Brown   fpos = PetscMax(f,0);
179*c4762a1bSJed Brown   fneg = PetscMin(f,0);
180*c4762a1bSJed Brown   if (user->st_width == 1) {
181*c4762a1bSJed Brown     *p1 = fpos*(p[j][i] - p[j][i-1])/user->dx + fneg*(p[j][i+1] - p[j][i])/user->dx;
182*c4762a1bSJed Brown   } else if (user->st_width == 2) {
183*c4762a1bSJed Brown     *p1 = fpos*(3*p[j][i] - 4*p[j][i-1] + p[j][i-2])/(2*user->dx) + fneg*(-p[j][i+2] + 4*p[j][i+1] - 3*p[j][i])/(2*user->dx);
184*c4762a1bSJed Brown   } else if (user->st_width == 3) {
185*c4762a1bSJed Brown     *p1 = fpos*(2*p[j][i+1] + 3*p[j][i] - 6*p[j][i-1] + p[j][i-2])/(6*user->dx) + fneg*(-p[j][i+2] + 6*p[j][i+1] - 3*p[j][i] - 2*p[j][i-1])/(6*user->dx);
186*c4762a1bSJed Brown   }
187*c4762a1bSJed Brown   /* *p1 = f*(p[j][i+1] - p[j][i-1])/user->dx;*/
188*c4762a1bSJed Brown   PetscFunctionReturn(0);
189*c4762a1bSJed Brown }
190*c4762a1bSJed Brown 
191*c4762a1bSJed Brown /* Second advection term */
192*c4762a1bSJed Brown PetscErrorCode adv2(PetscScalar **p,PetscScalar x,PetscScalar y,PetscInt i,PetscInt j,PetscInt N,PetscScalar *p2,AppCtx *user)
193*c4762a1bSJed Brown {
194*c4762a1bSJed Brown   PetscScalar f,fpos,fneg;
195*c4762a1bSJed Brown   PetscFunctionBegin;
196*c4762a1bSJed Brown   f   = (user->ws/(2*user->H))*(user->PM_min - user->Pmax*PetscSinScalar(x) - user->D*(y - user->ws));
197*c4762a1bSJed Brown   fpos = PetscMax(f,0);
198*c4762a1bSJed Brown   fneg = PetscMin(f,0);
199*c4762a1bSJed Brown   if (user->st_width == 1) {
200*c4762a1bSJed Brown     *p2 = fpos*(p[j][i] - p[j-1][i])/user->dy + fneg*(p[j+1][i] - p[j][i])/user->dy;
201*c4762a1bSJed Brown   } else if (user->st_width ==2) {
202*c4762a1bSJed Brown     *p2 = fpos*(3*p[j][i] - 4*p[j-1][i] + p[j-2][i])/(2*user->dy) + fneg*(-p[j+2][i] + 4*p[j+1][i] - 3*p[j][i])/(2*user->dy);
203*c4762a1bSJed Brown   } else if (user->st_width == 3) {
204*c4762a1bSJed Brown     *p2 = fpos*(2*p[j+1][i] + 3*p[j][i] - 6*p[j-1][i] + p[j-2][i])/(6*user->dy) + fneg*(-p[j+2][i] + 6*p[j+1][i] - 3*p[j][i] - 2*p[j-1][i])/(6*user->dy);
205*c4762a1bSJed Brown   }
206*c4762a1bSJed Brown 
207*c4762a1bSJed Brown   /* *p2 = f*(p[j+1][i] - p[j-1][i])/user->dy;*/
208*c4762a1bSJed Brown   PetscFunctionReturn(0);
209*c4762a1bSJed Brown }
210*c4762a1bSJed Brown 
211*c4762a1bSJed Brown /* Diffusion term */
212*c4762a1bSJed Brown PetscErrorCode diffuse(PetscScalar **p,PetscInt i,PetscInt j,PetscReal t,PetscScalar *p_diff,AppCtx * user)
213*c4762a1bSJed Brown {
214*c4762a1bSJed Brown   PetscFunctionBeginUser;
215*c4762a1bSJed Brown   if (user->st_width == 1) {
216*c4762a1bSJed Brown     *p_diff = user->disper_coe*((p[j-1][i] - 2*p[j][i] + p[j+1][i])/(user->dy*user->dy));
217*c4762a1bSJed Brown   } else if (user->st_width == 2) {
218*c4762a1bSJed Brown     *p_diff = user->disper_coe*((-p[j-2][i] + 16*p[j-1][i] - 30*p[j][i] + 16*p[j+1][i] - p[j+2][i])/(12.0*user->dy*user->dy));
219*c4762a1bSJed Brown   } else if (user->st_width == 3) {
220*c4762a1bSJed Brown     *p_diff = user->disper_coe*((2*p[j-3][i] - 27*p[j-2][i] + 270*p[j-1][i] - 490*p[j][i] + 270*p[j+1][i] - 27*p[j+2][i] + 2*p[j+3][i])/(180.0*user->dy*user->dy));
221*c4762a1bSJed Brown   }
222*c4762a1bSJed Brown   PetscFunctionReturn(0);
223*c4762a1bSJed Brown }
224*c4762a1bSJed Brown 
225*c4762a1bSJed Brown PetscErrorCode IFunction(TS ts,PetscReal t,Vec X,Vec Xdot,Vec F,void *ctx)
226*c4762a1bSJed Brown {
227*c4762a1bSJed Brown   PetscErrorCode ierr;
228*c4762a1bSJed Brown   AppCtx         *user=(AppCtx*)ctx;
229*c4762a1bSJed Brown   DM             cda;
230*c4762a1bSJed Brown   DMDACoor2d     **coors;
231*c4762a1bSJed Brown   PetscScalar    **p,**f,**pdot;
232*c4762a1bSJed Brown   PetscInt       i,j;
233*c4762a1bSJed Brown   PetscInt       xs,ys,xm,ym,M,N;
234*c4762a1bSJed Brown   Vec            localX,gc,localXdot;
235*c4762a1bSJed Brown   PetscScalar    p_adv1 = 0.0,p_adv2 = 0.0,p_diff = 0;
236*c4762a1bSJed Brown   PetscScalar    diffuse1,gamma;
237*c4762a1bSJed Brown 
238*c4762a1bSJed Brown   PetscFunctionBeginUser;
239*c4762a1bSJed Brown   ierr = DMDAGetInfo(user->da,NULL,&M,&N,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL);CHKERRQ(ierr);
240*c4762a1bSJed Brown   ierr = DMGetCoordinateDM(user->da,&cda);CHKERRQ(ierr);
241*c4762a1bSJed Brown   ierr = DMDAGetCorners(cda,&xs,&ys,0,&xm,&ym,0);CHKERRQ(ierr);
242*c4762a1bSJed Brown 
243*c4762a1bSJed Brown   ierr = DMGetLocalVector(user->da,&localX);CHKERRQ(ierr);
244*c4762a1bSJed Brown   ierr = DMGetLocalVector(user->da,&localXdot);CHKERRQ(ierr);
245*c4762a1bSJed Brown 
246*c4762a1bSJed Brown   ierr = DMGlobalToLocalBegin(user->da,X,INSERT_VALUES,localX);CHKERRQ(ierr);
247*c4762a1bSJed Brown   ierr = DMGlobalToLocalEnd(user->da,X,INSERT_VALUES,localX);CHKERRQ(ierr);
248*c4762a1bSJed Brown   ierr = DMGlobalToLocalBegin(user->da,Xdot,INSERT_VALUES,localXdot);CHKERRQ(ierr);
249*c4762a1bSJed Brown   ierr = DMGlobalToLocalEnd(user->da,Xdot,INSERT_VALUES,localXdot);CHKERRQ(ierr);
250*c4762a1bSJed Brown 
251*c4762a1bSJed Brown   ierr = DMGetCoordinatesLocal(user->da,&gc);CHKERRQ(ierr);
252*c4762a1bSJed Brown 
253*c4762a1bSJed Brown   ierr = DMDAVecGetArrayRead(cda,gc,&coors);CHKERRQ(ierr);
254*c4762a1bSJed Brown   ierr = DMDAVecGetArrayRead(user->da,localX,&p);CHKERRQ(ierr);
255*c4762a1bSJed Brown   ierr = DMDAVecGetArrayRead(user->da,localXdot,&pdot);CHKERRQ(ierr);
256*c4762a1bSJed Brown   ierr = DMDAVecGetArray(user->da,F,&f);CHKERRQ(ierr);
257*c4762a1bSJed Brown 
258*c4762a1bSJed Brown   gamma = user->D*user->ws/(2*user->H);
259*c4762a1bSJed Brown   diffuse1 = user->lambda*user->lambda*user->q/(user->lambda*gamma+1)*(1.0 - PetscExpScalar(-t*(gamma+1.0)/user->lambda));
260*c4762a1bSJed Brown   user->disper_coe = user->ws*user->ws/(4*user->H*user->H)*diffuse1;
261*c4762a1bSJed Brown 
262*c4762a1bSJed Brown   for (i=xs; i < xs+xm; i++) {
263*c4762a1bSJed Brown     for (j=ys; j < ys+ym; j++) {
264*c4762a1bSJed Brown       ierr = adv1(p,coors[j][i].y,i,j,M,&p_adv1,user);CHKERRQ(ierr);
265*c4762a1bSJed Brown       ierr = adv2(p,coors[j][i].x,coors[j][i].y,i,j,N,&p_adv2,user);CHKERRQ(ierr);
266*c4762a1bSJed Brown       ierr = diffuse(p,i,j,t,&p_diff,user);CHKERRQ(ierr);
267*c4762a1bSJed Brown       f[j][i] = -p_adv1 - p_adv2  + p_diff - pdot[j][i];
268*c4762a1bSJed Brown     }
269*c4762a1bSJed Brown   }
270*c4762a1bSJed Brown   ierr = DMDAVecRestoreArrayRead(user->da,localX,&p);CHKERRQ(ierr);
271*c4762a1bSJed Brown   ierr = DMDAVecRestoreArrayRead(user->da,localX,&pdot);CHKERRQ(ierr);
272*c4762a1bSJed Brown   ierr = DMRestoreLocalVector(user->da,&localX);CHKERRQ(ierr);
273*c4762a1bSJed Brown   ierr = DMRestoreLocalVector(user->da,&localXdot);CHKERRQ(ierr);
274*c4762a1bSJed Brown   ierr = DMDAVecRestoreArray(user->da,F,&f);CHKERRQ(ierr);
275*c4762a1bSJed Brown   ierr = DMDAVecRestoreArrayRead(cda,gc,&coors);CHKERRQ(ierr);
276*c4762a1bSJed Brown 
277*c4762a1bSJed Brown   PetscFunctionReturn(0);
278*c4762a1bSJed Brown }
279*c4762a1bSJed Brown 
280*c4762a1bSJed Brown PetscErrorCode IJacobian(TS ts,PetscReal t,Vec X,Vec Xdot,PetscReal a,Mat J,Mat Jpre,void *ctx)
281*c4762a1bSJed Brown {
282*c4762a1bSJed Brown   PetscErrorCode ierr;
283*c4762a1bSJed Brown   AppCtx         *user=(AppCtx*)ctx;
284*c4762a1bSJed Brown   DM             cda;
285*c4762a1bSJed Brown   DMDACoor2d     **coors;
286*c4762a1bSJed Brown   PetscInt       i,j;
287*c4762a1bSJed Brown   PetscInt       xs,ys,xm,ym,M,N;
288*c4762a1bSJed Brown   Vec            gc;
289*c4762a1bSJed Brown   PetscScalar    val[5],xi,yi;
290*c4762a1bSJed Brown   MatStencil     row,col[5];
291*c4762a1bSJed Brown   PetscScalar    c1,c3,c5,c1pos,c1neg,c3pos,c3neg;
292*c4762a1bSJed Brown 
293*c4762a1bSJed Brown   PetscFunctionBeginUser;
294*c4762a1bSJed Brown   ierr = DMDAGetInfo(user->da,NULL,&M,&N,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL,NULL);CHKERRQ(ierr);
295*c4762a1bSJed Brown   ierr = DMGetCoordinateDM(user->da,&cda);CHKERRQ(ierr);
296*c4762a1bSJed Brown   ierr = DMDAGetCorners(cda,&xs,&ys,0,&xm,&ym,0);CHKERRQ(ierr);
297*c4762a1bSJed Brown 
298*c4762a1bSJed Brown   ierr = DMGetCoordinatesLocal(user->da,&gc);CHKERRQ(ierr);
299*c4762a1bSJed Brown   ierr = DMDAVecGetArrayRead(cda,gc,&coors);CHKERRQ(ierr);
300*c4762a1bSJed Brown   for (i=xs; i < xs+xm; i++) {
301*c4762a1bSJed Brown     for (j=ys; j < ys+ym; j++) {
302*c4762a1bSJed Brown       PetscInt nc = 0;
303*c4762a1bSJed Brown       xi = coors[j][i].x; yi = coors[j][i].y;
304*c4762a1bSJed Brown       row.i = i; row.j = j;
305*c4762a1bSJed Brown       c1        = (yi-user->ws)/user->dx;
306*c4762a1bSJed Brown       c1pos    = PetscMax(c1,0);
307*c4762a1bSJed Brown       c1neg    = PetscMin(c1,0);
308*c4762a1bSJed Brown       c3        = (user->ws/(2.0*user->H))*(user->PM_min - user->Pmax*PetscSinScalar(xi) - user->D*(yi - user->ws))/user->dy;
309*c4762a1bSJed Brown       c3pos    = PetscMax(c3,0);
310*c4762a1bSJed Brown       c3neg    = PetscMin(c3,0);
311*c4762a1bSJed Brown       c5        = (PetscPowScalar((user->lambda*user->ws)/(2*user->H),2)*user->q*(1.0-PetscExpScalar(-t/user->lambda)))/(user->dy*user->dy);
312*c4762a1bSJed Brown       col[nc].i = i-1; col[nc].j = j;   val[nc++] = c1pos;
313*c4762a1bSJed Brown       col[nc].i = i+1; col[nc].j = j;   val[nc++] = -c1neg;
314*c4762a1bSJed Brown       col[nc].i = i;   col[nc].j = j-1; val[nc++] = c3pos + c5;
315*c4762a1bSJed Brown       col[nc].i = i;   col[nc].j = j+1; val[nc++] = -c3neg + c5;
316*c4762a1bSJed Brown       col[nc].i = i;   col[nc].j = j;   val[nc++] = -c1pos + c1neg -c3pos + c3neg -2*c5 -a;
317*c4762a1bSJed Brown       ierr = MatSetValuesStencil(Jpre,1,&row,nc,col,val,INSERT_VALUES);CHKERRQ(ierr);
318*c4762a1bSJed Brown     }
319*c4762a1bSJed Brown   }
320*c4762a1bSJed Brown   ierr = DMDAVecRestoreArrayRead(cda,gc,&coors);CHKERRQ(ierr);
321*c4762a1bSJed Brown 
322*c4762a1bSJed Brown   ierr =  MatAssemblyBegin(Jpre,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
323*c4762a1bSJed Brown   ierr = MatAssemblyEnd(Jpre,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
324*c4762a1bSJed Brown   if (J != Jpre) {
325*c4762a1bSJed Brown     ierr = MatAssemblyBegin(J,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
326*c4762a1bSJed Brown     ierr = MatAssemblyEnd(J,MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
327*c4762a1bSJed Brown   }
328*c4762a1bSJed Brown   PetscFunctionReturn(0);
329*c4762a1bSJed Brown }
330*c4762a1bSJed Brown 
331*c4762a1bSJed Brown PetscErrorCode Parameter_settings(AppCtx *user)
332*c4762a1bSJed Brown {
333*c4762a1bSJed Brown   PetscErrorCode ierr;
334*c4762a1bSJed Brown   PetscBool      flg;
335*c4762a1bSJed Brown 
336*c4762a1bSJed Brown   PetscFunctionBeginUser;
337*c4762a1bSJed Brown 
338*c4762a1bSJed Brown   /* Set default parameters */
339*c4762a1bSJed Brown   user->ws     = 1.0;
340*c4762a1bSJed Brown   user->H      = 5.0;
341*c4762a1bSJed Brown   user->D      = 0.0;
342*c4762a1bSJed Brown   user->Pmax = user->Pmax_s  = 2.1;
343*c4762a1bSJed Brown   user->PM_min = 1.0;
344*c4762a1bSJed Brown   user->lambda = 0.1;
345*c4762a1bSJed Brown   user->q      = 1.0;
346*c4762a1bSJed Brown   user->mux    = PetscAsinScalar(user->PM_min/user->Pmax);
347*c4762a1bSJed Brown   user->sigmax = 0.1;
348*c4762a1bSJed Brown   user->sigmay = 0.1;
349*c4762a1bSJed Brown   user->rho    = 0.0;
350*c4762a1bSJed Brown   user->xmin   = -PETSC_PI;
351*c4762a1bSJed Brown   user->xmax   = PETSC_PI;
352*c4762a1bSJed Brown   user->bx     = DM_BOUNDARY_PERIODIC;
353*c4762a1bSJed Brown   user->by     = DM_BOUNDARY_GHOSTED;
354*c4762a1bSJed Brown   user->tf = user->tcl = -1;
355*c4762a1bSJed Brown   user->ymin   = -2.0;
356*c4762a1bSJed Brown   user->ymax   = 2.0;
357*c4762a1bSJed Brown   user->st_width = 1;
358*c4762a1bSJed Brown 
359*c4762a1bSJed Brown   ierr = PetscOptionsGetScalar(NULL,NULL,"-ws",&user->ws,&flg);CHKERRQ(ierr);
360*c4762a1bSJed Brown   ierr = PetscOptionsGetScalar(NULL,NULL,"-Inertia",&user->H,&flg);CHKERRQ(ierr);
361*c4762a1bSJed Brown   ierr = PetscOptionsGetScalar(NULL,NULL,"-D",&user->D,&flg);CHKERRQ(ierr);
362*c4762a1bSJed Brown   ierr = PetscOptionsGetScalar(NULL,NULL,"-Pmax",&user->Pmax,&flg);CHKERRQ(ierr);
363*c4762a1bSJed Brown   ierr = PetscOptionsGetScalar(NULL,NULL,"-PM_min",&user->PM_min,&flg);CHKERRQ(ierr);
364*c4762a1bSJed Brown   ierr = PetscOptionsGetScalar(NULL,NULL,"-lambda",&user->lambda,&flg);CHKERRQ(ierr);
365*c4762a1bSJed Brown   ierr = PetscOptionsGetScalar(NULL,NULL,"-q",&user->q,&flg);CHKERRQ(ierr);
366*c4762a1bSJed Brown   ierr = PetscOptionsGetScalar(NULL,NULL,"-mux",&user->mux,&flg);CHKERRQ(ierr);
367*c4762a1bSJed Brown   ierr = PetscOptionsGetScalar(NULL,NULL,"-muy",&user->muy,&flg);CHKERRQ(ierr);
368*c4762a1bSJed Brown   if (flg == 0) {
369*c4762a1bSJed Brown     user->muy = user->ws;
370*c4762a1bSJed Brown   }
371*c4762a1bSJed Brown   ierr = PetscOptionsGetScalar(NULL,NULL,"-xmin",&user->xmin,&flg);CHKERRQ(ierr);
372*c4762a1bSJed Brown   ierr = PetscOptionsGetScalar(NULL,NULL,"-xmax",&user->xmax,&flg);CHKERRQ(ierr);
373*c4762a1bSJed Brown   ierr = PetscOptionsGetScalar(NULL,NULL,"-ymin",&user->ymin,&flg);CHKERRQ(ierr);
374*c4762a1bSJed Brown   ierr = PetscOptionsGetScalar(NULL,NULL,"-ymax",&user->ymax,&flg);CHKERRQ(ierr);
375*c4762a1bSJed Brown   ierr = PetscOptionsGetInt(NULL,NULL,"-stencil_width",&user->st_width,&flg);CHKERRQ(ierr);
376*c4762a1bSJed Brown   ierr = PetscOptionsGetEnum(NULL,NULL,"-bx",DMBoundaryTypes,(PetscEnum*)&user->bx,&flg);CHKERRQ(ierr);
377*c4762a1bSJed Brown   ierr = PetscOptionsGetEnum(NULL,NULL,"-by",DMBoundaryTypes,(PetscEnum*)&user->by,&flg);CHKERRQ(ierr);
378*c4762a1bSJed Brown   ierr = PetscOptionsGetReal(NULL,NULL,"-tf",&user->tf,&flg);CHKERRQ(ierr);
379*c4762a1bSJed Brown   ierr = PetscOptionsGetReal(NULL,NULL,"-tcl",&user->tcl,&flg);CHKERRQ(ierr);
380*c4762a1bSJed Brown   PetscFunctionReturn(0);
381*c4762a1bSJed Brown }
382*c4762a1bSJed Brown 
383*c4762a1bSJed Brown /*TEST
384*c4762a1bSJed Brown 
385*c4762a1bSJed Brown    build:
386*c4762a1bSJed Brown       requires: !complex x
387*c4762a1bSJed Brown 
388*c4762a1bSJed Brown    test:
389*c4762a1bSJed Brown       args: -ts_max_steps 1
390*c4762a1bSJed Brown       localrunfiles: petscopt_ex8
391*c4762a1bSJed Brown       timeoutfactor: 3
392*c4762a1bSJed Brown 
393*c4762a1bSJed Brown TEST*/
394