xref: /petsc/src/ts/utils/dmplexlandau/kokkos/landau.kokkos.cxx (revision 13241b6829abed3a189b835e9363dd2ed3e166ee)
1e0eea495SMark /*
2e0eea495SMark   Implements the Kokkos kernel
3e0eea495SMark */
4e0eea495SMark #include <petscconf.h>
511d22bbfSJunchao Zhang #include <petscvec_kokkos.hpp>
6e0eea495SMark #include <petsc/private/dmpleximpl.h>   /*I   "petscdmplex.h"   I*/
7e0eea495SMark #include <petsclandau.h>
8e0eea495SMark #include <petscts.h>
9a587d139SMark 
10e0eea495SMark #include <Kokkos_Core.hpp>
11e0eea495SMark #include <cstdio>
12e0eea495SMark typedef Kokkos::TeamPolicy<>::member_type team_member;
13e0eea495SMark #include "../land_tensors.h"
14a587d139SMark #include <petscaijdevice.h>
15e0eea495SMark 
16e0eea495SMark namespace landau_inner_red {  // namespace helps with name resolution in reduction identity
1752cdd6eaSMark   template< class ScalarType >
18e0eea495SMark   struct array_type {
1952cdd6eaSMark     ScalarType gg2[LANDAU_DIM];
2052cdd6eaSMark     ScalarType gg3[LANDAU_DIM][LANDAU_DIM];
21e0eea495SMark 
22e0eea495SMark     KOKKOS_INLINE_FUNCTION   // Default constructor - Initialize to 0's
23e0eea495SMark     array_type() {
24e0eea495SMark       for (int j = 0; j < LANDAU_DIM; j++) {
2552cdd6eaSMark         gg2[j] = 0;
26e0eea495SMark         for (int k = 0; k < LANDAU_DIM; k++) {
2752cdd6eaSMark           gg3[j][k] = 0;
28e0eea495SMark         }
29e0eea495SMark       }
30e0eea495SMark     }
31e0eea495SMark     KOKKOS_INLINE_FUNCTION   // Copy Constructor
32e0eea495SMark     array_type(const array_type & rhs) {
33e0eea495SMark       for (int j = 0; j < LANDAU_DIM; j++) {
3452cdd6eaSMark         gg2[j] = rhs.gg2[j];
35e0eea495SMark         for (int k = 0; k < LANDAU_DIM; k++) {
3652cdd6eaSMark           gg3[j][k] = rhs.gg3[j][k];
37e0eea495SMark         }
38e0eea495SMark       }
39e0eea495SMark     }
40e0eea495SMark     KOKKOS_INLINE_FUNCTION   // add operator
4170a7d78aSStefano Zampini     array_type& operator += (const array_type& src)
4270a7d78aSStefano Zampini     {
43e0eea495SMark       for (int j = 0; j < LANDAU_DIM; j++) {
4452cdd6eaSMark         gg2[j] += src.gg2[j];
45e0eea495SMark         for (int k = 0; k < LANDAU_DIM; k++) {
4652cdd6eaSMark           gg3[j][k] += src.gg3[j][k];
47e0eea495SMark         }
48e0eea495SMark       }
49e0eea495SMark       return *this;
50e0eea495SMark     }
51e0eea495SMark     KOKKOS_INLINE_FUNCTION   // volatile add operator
5270a7d78aSStefano Zampini     void operator += (const volatile array_type& src) volatile
5370a7d78aSStefano Zampini     {
54e0eea495SMark       for (int j = 0; j < LANDAU_DIM; j++) {
5552cdd6eaSMark         gg2[j] += src.gg2[j];
56e0eea495SMark         for (int k = 0; k < LANDAU_DIM; k++) {
5752cdd6eaSMark           gg3[j][k] += src.gg3[j][k];
58e0eea495SMark         }
59e0eea495SMark       }
60e0eea495SMark     }
61e0eea495SMark   };
6252cdd6eaSMark   typedef array_type<PetscReal> TensorValueType;  // used to simplify code below
63e0eea495SMark }
64e0eea495SMark 
65e0eea495SMark namespace Kokkos { //reduction identity must be defined in Kokkos namespace
66e0eea495SMark   template<>
6752cdd6eaSMark   struct reduction_identity< landau_inner_red::TensorValueType > {
6852cdd6eaSMark     KOKKOS_FORCEINLINE_FUNCTION static landau_inner_red::TensorValueType sum() {
6952cdd6eaSMark       return landau_inner_red::TensorValueType();
70e0eea495SMark     }
71e0eea495SMark   };
72e0eea495SMark }
73e0eea495SMark 
74e0eea495SMark extern "C"  {
758a6f2e61SMark Adams PetscErrorCode LandauKokkosCreateMatMaps(P4estVertexMaps maps[], pointInterpolationP4est (*pointMaps)[LANDAU_MAX_Q_FACE], PetscInt Nf[], PetscInt Nq, PetscInt grid)
76a587d139SMark {
77a587d139SMark   P4estVertexMaps   h_maps;  /* host container */
788a6f2e61SMark Adams   const Kokkos::View<pointInterpolationP4est*[LANDAU_MAX_Q_FACE], Kokkos::LayoutRight, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> >    h_points ((pointInterpolationP4est*)pointMaps, maps[grid].num_reduced);
798a6f2e61SMark Adams   const Kokkos::View< LandauIdx*[LANDAU_MAX_SPECIES][LANDAU_MAX_NQ], Kokkos::LayoutRight, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_gidx ((LandauIdx*)maps[grid].gIdx, maps[grid].num_elements);
808a6f2e61SMark Adams   Kokkos::View<pointInterpolationP4est*[LANDAU_MAX_Q_FACE], Kokkos::LayoutRight>   *d_points = new Kokkos::View<pointInterpolationP4est*[LANDAU_MAX_Q_FACE], Kokkos::LayoutRight>("points", maps[grid].num_reduced);
818a6f2e61SMark Adams   Kokkos::View<LandauIdx*[LANDAU_MAX_SPECIES][LANDAU_MAX_NQ], Kokkos::LayoutRight> *d_gidx = new Kokkos::View<LandauIdx*[LANDAU_MAX_SPECIES][LANDAU_MAX_NQ], Kokkos::LayoutRight>("gIdx", maps[grid].num_elements);
82a587d139SMark 
83a587d139SMark   PetscFunctionBegin;
84a587d139SMark   Kokkos::deep_copy (*d_gidx, h_gidx);
85a587d139SMark   Kokkos::deep_copy (*d_points, h_points);
868a6f2e61SMark Adams   h_maps.num_elements = maps[grid].num_elements;
878a6f2e61SMark Adams   h_maps.num_face = maps[grid].num_face;
888a6f2e61SMark Adams   h_maps.num_reduced = maps[grid].num_reduced;
898a6f2e61SMark Adams   h_maps.deviceType = maps[grid].deviceType;
908a6f2e61SMark Adams   h_maps.numgrids = maps[grid].numgrids;
918a6f2e61SMark Adams   h_maps.Nf = Nf[grid];
92a587d139SMark   h_maps.c_maps = (pointInterpolationP4est (*)[LANDAU_MAX_Q_FACE]) d_points->data();
938a6f2e61SMark Adams   maps[grid].vp1 = (void*)d_points;
94a587d139SMark   h_maps.gIdx = (LandauIdx (*)[LANDAU_MAX_SPECIES][LANDAU_MAX_NQ]) d_gidx->data();
958a6f2e61SMark Adams   maps[grid].vp2 = (void*)d_gidx;
96a587d139SMark   {
97a587d139SMark     Kokkos::View<P4estVertexMaps, Kokkos::HostSpace> h_maps_k(&h_maps);
9811d22bbfSJunchao Zhang     Kokkos::View<P4estVertexMaps>                    *d_maps_k = new Kokkos::View<P4estVertexMaps>(Kokkos::create_mirror(Kokkos::DefaultExecutionSpace::memory_space(),h_maps_k));
99a587d139SMark     Kokkos::deep_copy (*d_maps_k, h_maps_k);
1008a6f2e61SMark Adams     maps[grid].d_self = d_maps_k->data();
1018a6f2e61SMark Adams     maps[grid].vp3 = (void*)d_maps_k;
102a587d139SMark   }
103a587d139SMark   PetscFunctionReturn(0);
104a587d139SMark }
1058a6f2e61SMark Adams PetscErrorCode LandauKokkosDestroyMatMaps(P4estVertexMaps maps[], PetscInt num_grids)
106a587d139SMark {
107362febeeSStefano Zampini   PetscFunctionBegin;
1088a6f2e61SMark Adams   for (PetscInt grid=0;grid<num_grids;grid++) {
1098a6f2e61SMark Adams     auto a = static_cast<Kokkos::View<pointInterpolationP4est*[LANDAU_MAX_Q_FACE], Kokkos::LayoutRight>*>(maps[grid].vp1);
1108a6f2e61SMark Adams     auto b = static_cast<Kokkos::View<LandauIdx*[LANDAU_MAX_SPECIES][LANDAU_MAX_NQ], Kokkos::LayoutRight>*>(maps[grid].vp2);
1118a6f2e61SMark Adams     auto c = static_cast<Kokkos::View<P4estVertexMaps*>*>(maps[grid].vp3);
112a587d139SMark     delete a;  delete b;  delete c;
1138a6f2e61SMark Adams   }
114a587d139SMark   PetscFunctionReturn(0);
115a587d139SMark }
116a587d139SMark 
1178fdabdddSMark Adams PetscErrorCode LandauKokkosStaticDataSet(DM plex, const PetscInt Nq, const PetscInt batch_sz, const PetscInt num_grids,
1188fdabdddSMark Adams                                          PetscInt a_numCells[], PetscInt a_species_offset[], PetscInt a_mat_offset[],
1198a6f2e61SMark Adams                                          PetscReal a_nu_alpha[], PetscReal a_nu_beta[], PetscReal a_invMass[], PetscReal a_invJ[],
1208a6f2e61SMark Adams                                          PetscReal a_x[], PetscReal a_y[], PetscReal a_z[], PetscReal a_w[], LandauStaticData *SData_d)
121e0eea495SMark {
122e0eea495SMark   PetscReal       *BB,*DD;
123e8d2b73aSMark Adams   PetscErrorCode  ierr;
124e8d2b73aSMark Adams   PetscTabulation *Tf;
1258a6f2e61SMark Adams   PetscInt        dim;
1268a6f2e61SMark Adams   PetscInt        Nb=Nq,ip_offset[LANDAU_MAX_GRIDS+1],ipf_offset[LANDAU_MAX_GRIDS+1],elem_offset[LANDAU_MAX_GRIDS+1],nip,IPf_sz,Nftot;
127e8d2b73aSMark Adams   PetscDS         prob;
128e0eea495SMark 
129e0eea495SMark   PetscFunctionBegin;
130e0eea495SMark   ierr = DMGetDimension(plex, &dim);CHKERRQ(ierr);
131e0eea495SMark   ierr = DMGetDS(plex, &prob);CHKERRQ(ierr);
1322c71b3e2SJacob Faibussowitsch   PetscCheckFalse(LANDAU_DIM != dim,PETSC_COMM_WORLD, PETSC_ERR_PLIB, "dim %D != LANDAU_DIM %d",dim,LANDAU_DIM);
133e0eea495SMark   ierr = PetscDSGetTabulation(prob, &Tf);CHKERRQ(ierr);
134e8d2b73aSMark Adams   BB   = Tf[0]->T[0]; DD = Tf[0]->T[1];
1358a6f2e61SMark Adams   ip_offset[0] = ipf_offset[0] = elem_offset[0] = 0;
1368a6f2e61SMark Adams   nip = 0;
1378a6f2e61SMark Adams   IPf_sz = 0;
1388a6f2e61SMark Adams   for (PetscInt grid=0 ; grid<num_grids ; grid++) {
1398a6f2e61SMark Adams     PetscInt nfloc = a_species_offset[grid+1] - a_species_offset[grid];
1408a6f2e61SMark Adams     elem_offset[grid+1] = elem_offset[grid] + a_numCells[grid];
1418a6f2e61SMark Adams     nip += a_numCells[grid]*Nq;
1428a6f2e61SMark Adams     ip_offset[grid+1] = nip;
1438a6f2e61SMark Adams     IPf_sz += Nq*nfloc*a_numCells[grid];
1448a6f2e61SMark Adams     ipf_offset[grid+1] = IPf_sz;
1458a6f2e61SMark Adams   }
1468a6f2e61SMark Adams   Nftot = a_species_offset[num_grids];
147e8d2b73aSMark Adams   ierr = PetscKokkosInitializeCheck();CHKERRQ(ierr);
148e8d2b73aSMark Adams   {
1498a6f2e61SMark Adams     const Kokkos::View<PetscReal*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_alpha (a_nu_alpha, Nftot);
1508a6f2e61SMark Adams     auto alpha = new Kokkos::View<PetscReal*, Kokkos::LayoutLeft> ("alpha", Nftot);
151e8d2b73aSMark Adams     SData_d->alpha = static_cast<void*>(alpha);
1528a6f2e61SMark Adams     const Kokkos::View<PetscReal*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_beta (a_nu_beta, Nftot);
1538a6f2e61SMark Adams     auto beta = new Kokkos::View<PetscReal*, Kokkos::LayoutLeft> ("beta", Nftot);
154e8d2b73aSMark Adams     SData_d->beta = static_cast<void*>(beta);
1558a6f2e61SMark Adams     const Kokkos::View<PetscReal*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_invMass (a_invMass,Nftot);
1568a6f2e61SMark Adams     auto invMass = new Kokkos::View<PetscReal*, Kokkos::LayoutLeft> ("invMass", Nftot);
157e8d2b73aSMark Adams     SData_d->invMass = static_cast<void*>(invMass);
158e8d2b73aSMark Adams     const Kokkos::View<PetscReal*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_BB (BB,Nq*Nb);
159e8d2b73aSMark Adams     auto B = new Kokkos::View<PetscReal*, Kokkos::LayoutLeft> ("B", Nq*Nb);
160e8d2b73aSMark Adams     SData_d->B = static_cast<void*>(B);
161e8d2b73aSMark Adams     const Kokkos::View<PetscReal*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_DD (DD,Nq*Nb*dim);
162e8d2b73aSMark Adams     auto D = new Kokkos::View<PetscReal*, Kokkos::LayoutLeft> ("D", Nq*Nb*dim);
163e8d2b73aSMark Adams     SData_d->D = static_cast<void*>(D);
164e8d2b73aSMark Adams     const Kokkos::View<PetscReal*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_invJ (a_invJ, nip*dim*dim);
165e8d2b73aSMark Adams     auto invJ = new Kokkos::View<PetscReal*, Kokkos::LayoutLeft> ("invJ", nip*dim*dim);
166e8d2b73aSMark Adams     SData_d->invJ = static_cast<void*>(invJ);
167e8d2b73aSMark Adams     const Kokkos::View<PetscReal*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_x (a_x, nip);
168e8d2b73aSMark Adams     auto x = new Kokkos::View<PetscReal*, Kokkos::LayoutLeft> ("x", nip);
169e8d2b73aSMark Adams     SData_d->x = static_cast<void*>(x);
170e8d2b73aSMark Adams     const Kokkos::View<PetscReal*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_y (a_y, nip);
171e8d2b73aSMark Adams     auto y = new Kokkos::View<PetscReal*, Kokkos::LayoutLeft> ("y", nip);
172e8d2b73aSMark Adams     SData_d->y = static_cast<void*>(y);
173e8d2b73aSMark Adams     const Kokkos::View<PetscReal*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_w (a_w, nip);
174e8d2b73aSMark Adams     auto w = new Kokkos::View<PetscReal*, Kokkos::LayoutLeft> ("w", nip);
175e8d2b73aSMark Adams     SData_d->w = static_cast<void*>(w);
176e8d2b73aSMark Adams 
177e8d2b73aSMark Adams     Kokkos::deep_copy (*alpha, h_alpha);
178e8d2b73aSMark Adams     Kokkos::deep_copy (*beta, h_beta);
179e8d2b73aSMark Adams     Kokkos::deep_copy (*invMass, h_invMass);
180e8d2b73aSMark Adams     Kokkos::deep_copy (*B, h_BB);
181e8d2b73aSMark Adams     Kokkos::deep_copy (*D, h_DD);
182e8d2b73aSMark Adams     Kokkos::deep_copy (*invJ, h_invJ);
183e8d2b73aSMark Adams     Kokkos::deep_copy (*x, h_x);
184e8d2b73aSMark Adams     Kokkos::deep_copy (*y, h_y);
185e8d2b73aSMark Adams     Kokkos::deep_copy (*w, h_w);
186e8d2b73aSMark Adams 
1878a6f2e61SMark Adams     if (dim==3) {
1888a6f2e61SMark Adams       const Kokkos::View<PetscReal*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_z (a_z , dim==3 ? nip : 0);
1898a6f2e61SMark Adams       auto z = new Kokkos::View<PetscReal*, Kokkos::LayoutLeft> ("z", nip);
1908a6f2e61SMark Adams       SData_d->z = static_cast<void*>(z);
1918a6f2e61SMark Adams       Kokkos::deep_copy (*z, h_z);
1928a6f2e61SMark Adams     } else SData_d->z = NULL;
1938a6f2e61SMark Adams 
1948a6f2e61SMark Adams     //
1958a6f2e61SMark Adams     const Kokkos::View<PetscInt*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_NCells (a_numCells, num_grids);
1968a6f2e61SMark Adams     auto nc = new Kokkos::View<PetscInt*, Kokkos::LayoutLeft> ("NCells",num_grids);
1978a6f2e61SMark Adams     SData_d->NCells = static_cast<void*>(nc);
1988a6f2e61SMark Adams     Kokkos::deep_copy (*nc, h_NCells);
1998a6f2e61SMark Adams 
2008a6f2e61SMark Adams     const Kokkos::View<PetscInt*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_species_offset (a_species_offset, num_grids+1);
2018a6f2e61SMark Adams     auto soff = new Kokkos::View<PetscInt*, Kokkos::LayoutLeft> ("species_offset",num_grids+1);
2028a6f2e61SMark Adams     SData_d->species_offset = static_cast<void*>(soff);
2038a6f2e61SMark Adams     Kokkos::deep_copy (*soff, h_species_offset);
2048a6f2e61SMark Adams 
2058a6f2e61SMark Adams     const Kokkos::View<PetscInt*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_mat_offset (a_mat_offset, num_grids+1);
2068a6f2e61SMark Adams     auto moff = new Kokkos::View<PetscInt*, Kokkos::LayoutLeft> ("mat_offset",num_grids+1);
2078a6f2e61SMark Adams     SData_d->mat_offset = static_cast<void*>(moff);
2088a6f2e61SMark Adams     Kokkos::deep_copy (*moff, h_mat_offset);
2098a6f2e61SMark Adams 
2108a6f2e61SMark Adams     const Kokkos::View<PetscInt*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_ip_offset (ip_offset, num_grids+1);
2118a6f2e61SMark Adams     auto ipoff = new Kokkos::View<PetscInt*, Kokkos::LayoutLeft> ("ip_offset",num_grids+1);
2128a6f2e61SMark Adams     SData_d->ip_offset = static_cast<void*>(ipoff);
2138a6f2e61SMark Adams     Kokkos::deep_copy (*ipoff,  h_ip_offset);
2148a6f2e61SMark Adams 
2158a6f2e61SMark Adams     const Kokkos::View<PetscInt*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_elem_offset (elem_offset, num_grids+1);
2168a6f2e61SMark Adams     auto eoff = new Kokkos::View<PetscInt*, Kokkos::LayoutLeft> ("elem_offset",num_grids+1);
2178a6f2e61SMark Adams     SData_d->elem_offset = static_cast<void*>(eoff);
2188a6f2e61SMark Adams     Kokkos::deep_copy (*eoff,  h_elem_offset);
2198a6f2e61SMark Adams 
2208a6f2e61SMark Adams     const Kokkos::View<PetscInt*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_ipf_offset (ipf_offset, num_grids+1);
2218a6f2e61SMark Adams     auto ipfoff = new Kokkos::View<PetscInt*, Kokkos::LayoutLeft> ("ipf_offset",num_grids+1);
2228a6f2e61SMark Adams     SData_d->ipf_offset = static_cast<void*>(ipfoff);
2238a6f2e61SMark Adams     Kokkos::deep_copy (*ipfoff,  h_ipf_offset);
2248a6f2e61SMark Adams #if defined(LANDAU_LAYOUT_LEFT) // preallocate dynamic data, no copy
2258fdabdddSMark Adams     auto ipfdf_data =  new Kokkos::View<PetscReal***, Kokkos::LayoutLeft > ("fdf", batch_sz, dim+1, IPf_sz);
2268a6f2e61SMark Adams #else
2278fdabdddSMark Adams     auto ipfdf_data =  new Kokkos::View<PetscReal***, Kokkos::LayoutRight > ("fdf",batch_sz,  dim+1, IPf_sz);
2288a6f2e61SMark Adams #endif
2298a6f2e61SMark Adams     SData_d->ipfdf_data = static_cast<void*>(ipfdf_data);
2308fdabdddSMark Adams     auto Eq_m = new Kokkos::View<PetscReal*, Kokkos::LayoutLeft> ("Eq_m",Nftot); // allocate but do not set, same for whole batch
231e8d2b73aSMark Adams     SData_d->Eq_m = static_cast<void*>(Eq_m);
232bfc784b7SMark Adams     const Kokkos::View<LandauIdx*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_coo_elem_offsets (SData_d->coo_elem_offsets, SData_d->n_coo_cellsTot+1);
233bfc784b7SMark Adams     auto coo_elem_offsets = new Kokkos::View<LandauIdx*, Kokkos::LayoutLeft> ("coo_elem_offsets",SData_d->n_coo_cellsTot+1);
234bfc784b7SMark Adams     const Kokkos::View<LandauIdx*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_coo_elem_fullNb (SData_d->coo_elem_fullNb, SData_d->n_coo_cellsTot);
235bfc784b7SMark Adams     auto coo_elem_fullNb = new Kokkos::View<LandauIdx*, Kokkos::LayoutLeft> ("coo_elem_offsets",SData_d->n_coo_cellsTot);
236bfc784b7SMark Adams     const Kokkos::View<LandauIdx**, Kokkos::LayoutRight, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_coo_elem_point_offsets ((LandauIdx*)SData_d->coo_elem_point_offsets, SData_d->n_coo_cellsTot, LANDAU_MAX_NQ+1);
237bfc784b7SMark Adams     auto coo_elem_point_offsets = new Kokkos::View<LandauIdx**, Kokkos::LayoutRight> ("coo_elem_point_offsets",SData_d->n_coo_cellsTot,LANDAU_MAX_NQ+1);
238bfc784b7SMark Adams     // assign & copy
239bfc784b7SMark Adams     Kokkos::deep_copy (*coo_elem_offsets,  h_coo_elem_offsets);
240bfc784b7SMark Adams     Kokkos::deep_copy (*coo_elem_fullNb,  h_coo_elem_fullNb);
241bfc784b7SMark Adams     Kokkos::deep_copy (*coo_elem_point_offsets,  h_coo_elem_point_offsets);
242bfc784b7SMark Adams     // need to free this now and use pointer space
243bfc784b7SMark Adams     ierr = PetscFree3(SData_d->coo_elem_offsets,SData_d->coo_elem_fullNb,SData_d->coo_elem_point_offsets);CHKERRQ(ierr);
244bfc784b7SMark Adams     SData_d->coo_elem_offsets       = reinterpret_cast<LandauIdx*>(coo_elem_offsets);
245bfc784b7SMark Adams     SData_d->coo_elem_fullNb        = reinterpret_cast<LandauIdx*>(coo_elem_fullNb);
246bfc784b7SMark Adams     SData_d->coo_elem_point_offsets = reinterpret_cast<LandauIdx (*)[LANDAU_MAX_NQ+1]>(coo_elem_point_offsets);
247e8d2b73aSMark Adams   }
2488a6f2e61SMark Adams   SData_d->maps = NULL; // not used
249e8d2b73aSMark Adams   PetscFunctionReturn(0);
250e8d2b73aSMark Adams }
251e8d2b73aSMark Adams 
2528a6f2e61SMark Adams PetscErrorCode LandauKokkosStaticDataClear(LandauStaticData *SData_d)
253e8d2b73aSMark Adams {
254e8d2b73aSMark Adams   PetscFunctionBegin;
255e8d2b73aSMark Adams   if (SData_d->alpha) {
256e8d2b73aSMark Adams     auto alpha = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->alpha);
257e8d2b73aSMark Adams     delete alpha;
2588a6f2e61SMark Adams     SData_d->alpha = NULL;
259e8d2b73aSMark Adams     auto beta = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->beta);
260e8d2b73aSMark Adams     delete beta;
261e8d2b73aSMark Adams     auto invMass = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->invMass);
262e8d2b73aSMark Adams     delete invMass;
263e8d2b73aSMark Adams     auto B = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->B);
264e8d2b73aSMark Adams     delete B;
265e8d2b73aSMark Adams     auto D = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->D);
266e8d2b73aSMark Adams     delete D;
267e8d2b73aSMark Adams     auto invJ = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->invJ);
268e8d2b73aSMark Adams     delete invJ;
269e8d2b73aSMark Adams     auto x = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->x);
270e8d2b73aSMark Adams     delete x;
271e8d2b73aSMark Adams     auto y = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->y);
272e8d2b73aSMark Adams     delete y;
2738a6f2e61SMark Adams     if (SData_d->z) {
274e8d2b73aSMark Adams       auto z = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->z);
275e8d2b73aSMark Adams       delete z;
2768a6f2e61SMark Adams     }
2778a6f2e61SMark Adams #if defined(LANDAU_LAYOUT_LEFT) // preallocate dynamic data, no copy
2788fdabdddSMark Adams     auto z = static_cast<Kokkos::View<PetscReal***, Kokkos::LayoutLeft>*>(SData_d->ipfdf_data);
2798a6f2e61SMark Adams #else
2808fdabdddSMark Adams     auto z = static_cast<Kokkos::View<PetscReal***, Kokkos::LayoutRight>*>(SData_d->ipfdf_data);
2818a6f2e61SMark Adams #endif
2828a6f2e61SMark Adams     delete z;
283e8d2b73aSMark Adams     auto w = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->w);
284e8d2b73aSMark Adams     delete w;
285e8d2b73aSMark Adams     auto Eq_m = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->Eq_m);
286e8d2b73aSMark Adams     delete Eq_m;
2878a6f2e61SMark Adams     // offset
2888a6f2e61SMark Adams     auto nc = static_cast<Kokkos::View<PetscInt*, Kokkos::LayoutLeft>*>(SData_d->NCells);
2898a6f2e61SMark Adams     delete nc;
2908a6f2e61SMark Adams     auto soff = static_cast<Kokkos::View<PetscInt*, Kokkos::LayoutLeft>*>(SData_d->species_offset);
2918a6f2e61SMark Adams     delete soff;
2928a6f2e61SMark Adams     auto moff = static_cast<Kokkos::View<PetscInt*, Kokkos::LayoutLeft>*>(SData_d->mat_offset);
2938a6f2e61SMark Adams     delete moff;
2948a6f2e61SMark Adams     auto ipoff = static_cast<Kokkos::View<PetscInt*, Kokkos::LayoutLeft>*>(SData_d->ip_offset);
2958a6f2e61SMark Adams     delete ipoff;
2968a6f2e61SMark Adams     auto eoff = static_cast<Kokkos::View<PetscInt*, Kokkos::LayoutLeft>*>(SData_d->elem_offset);
2978a6f2e61SMark Adams     delete eoff;
2988a6f2e61SMark Adams     auto ipfoff = static_cast<Kokkos::View<PetscInt*, Kokkos::LayoutLeft>*>(SData_d->ipf_offset);
2998a6f2e61SMark Adams     delete ipfoff;
300bfc784b7SMark Adams     auto coo_elem_offsets = static_cast<Kokkos::View<LandauIdx*, Kokkos::LayoutLeft>*>((void*)SData_d->coo_elem_offsets);
301bfc784b7SMark Adams     delete coo_elem_offsets;
302bfc784b7SMark Adams     auto coo_elem_fullNb = static_cast<Kokkos::View<LandauIdx*, Kokkos::LayoutLeft>*>((void*)SData_d->coo_elem_fullNb);
303bfc784b7SMark Adams     delete coo_elem_fullNb;
304bfc784b7SMark Adams     auto coo_elem_point_offsets = static_cast<Kokkos::View<LandauIdx**, Kokkos::LayoutRight>*>((void*)SData_d->coo_elem_point_offsets);
305bfc784b7SMark Adams     delete coo_elem_point_offsets;
306bfc784b7SMark Adams     SData_d->coo_elem_offsets = NULL;
307bfc784b7SMark Adams     SData_d->coo_elem_point_offsets = NULL;
308bfc784b7SMark Adams     SData_d->coo_elem_fullNb = NULL;
309af0767daSMark Adams   }
310e8d2b73aSMark Adams   PetscFunctionReturn(0);
311e8d2b73aSMark Adams }
312e8d2b73aSMark Adams 
3138a6f2e61SMark Adams #define KOKKOS_SHARED_LEVEL 1
3148a6f2e61SMark Adams KOKKOS_INLINE_FUNCTION
315bfc784b7SMark Adams PetscErrorCode landau_mat_assemble(PetscSplitCSRDataStructure d_mat, PetscScalar *coo_vals, const PetscScalar Aij, const PetscInt f, const PetscInt g, const PetscInt Nb,
316bfc784b7SMark Adams                                    PetscInt moffset, const PetscInt elem, const PetscInt fieldA, const P4estVertexMaps *d_maps,
317bfc784b7SMark Adams                                    const LandauIdx coo_elem_offsets[], const LandauIdx coo_elem_fullNb[], Kokkos::View<LandauIdx**, Kokkos::LayoutRight> &coo_elem_point_offsets_k,
318bfc784b7SMark Adams                                    const PetscInt glb_elem_idx, const PetscInt bid_coo_sz_batch)
3198a6f2e61SMark Adams {
320ad4b5651SMark Adams   PetscInt               idx,q,nr,nc,d;
3218a6f2e61SMark Adams   const LandauIdx *const Idxs = &d_maps->gIdx[elem][fieldA][0];
322bfc784b7SMark Adams   PetscScalar            row_scale[LANDAU_MAX_Q_FACE]={0},col_scale[LANDAU_MAX_Q_FACE]={0};
323bfc784b7SMark Adams   if (coo_vals) { // mirror (i,j) in CreateStaticGPUData
324bfc784b7SMark Adams     const int fullNb = coo_elem_fullNb[glb_elem_idx],fullNb2=fullNb*fullNb;
325bfc784b7SMark Adams     idx = Idxs[f];
326bfc784b7SMark Adams     if (idx >= 0) {
327bfc784b7SMark Adams       nr = 1;
328bfc784b7SMark Adams       row_scale[0] = 1.;
329bfc784b7SMark Adams     } else {
330bfc784b7SMark Adams       idx = -idx - 1;
331bfc784b7SMark Adams       for (q = 0, nr = 0; q < d_maps->num_face; q++, nr++) {
332bfc784b7SMark Adams         if (d_maps->c_maps[idx][q].gid < 0) break;
333bfc784b7SMark Adams         row_scale[q] = d_maps->c_maps[idx][q].scale;
334bfc784b7SMark Adams       }
335bfc784b7SMark Adams     }
336bfc784b7SMark Adams     idx = Idxs[g];
337bfc784b7SMark Adams     if (idx >= 0) {
338bfc784b7SMark Adams       nc = 1;
339bfc784b7SMark Adams       col_scale[0] = 1.;
340bfc784b7SMark Adams     } else {
341bfc784b7SMark Adams       idx = -idx - 1;
342bfc784b7SMark Adams       nc = d_maps->num_face;
343bfc784b7SMark Adams       for (q = 0, nc = 0; q < d_maps->num_face; q++, nc++) {
344bfc784b7SMark Adams         if (d_maps->c_maps[idx][q].gid < 0) break;
345bfc784b7SMark Adams         col_scale[q] = d_maps->c_maps[idx][q].scale;
346bfc784b7SMark Adams       }
347bfc784b7SMark Adams     }
348bfc784b7SMark Adams     const int idx0 = bid_coo_sz_batch + coo_elem_offsets[glb_elem_idx] + fieldA*fullNb2 + fullNb * coo_elem_point_offsets_k(glb_elem_idx,f) + nr * coo_elem_point_offsets_k(glb_elem_idx,g);
349bfc784b7SMark Adams     for (int q = 0, idx2 = idx0; q < nr; q++) {
350bfc784b7SMark Adams       for (int d = 0; d < nc; d++, idx2++) {
351bfc784b7SMark Adams         coo_vals[idx2] = row_scale[q]*col_scale[d]*Aij;
352bfc784b7SMark Adams       }
353bfc784b7SMark Adams     }
354bfc784b7SMark Adams   } else {
355bfc784b7SMark Adams     PetscScalar            vals[LANDAU_MAX_Q_FACE*LANDAU_MAX_Q_FACE]={0};
356ad4b5651SMark Adams     PetscInt               rows[LANDAU_MAX_Q_FACE],cols[LANDAU_MAX_Q_FACE];
357ad4b5651SMark Adams     idx = Idxs[f];
3588a6f2e61SMark Adams     if (idx >= 0) {
3598a6f2e61SMark Adams       nr = 1;
360ad4b5651SMark Adams       rows[0] = idx;
361ad4b5651SMark Adams       row_scale[0] = 1.;
3628a6f2e61SMark Adams     } else {
363ad4b5651SMark Adams       idx = -idx - 1;
364ad4b5651SMark Adams       for (q = 0, nr = 0; q < d_maps->num_face; q++, nr++) {
365ad4b5651SMark Adams         if (d_maps->c_maps[idx][q].gid < 0) break;
366ad4b5651SMark Adams         rows[q]     = d_maps->c_maps[idx][q].gid;
367ad4b5651SMark Adams         row_scale[q] = d_maps->c_maps[idx][q].scale;
3688a6f2e61SMark Adams       }
369ad4b5651SMark Adams     }
370ad4b5651SMark Adams     idx = Idxs[g];
3718a6f2e61SMark Adams     if (idx >= 0) {
3728a6f2e61SMark Adams       nc = 1;
373ad4b5651SMark Adams       cols[0] = idx;
374ad4b5651SMark Adams       col_scale[0] = 1.;
3758a6f2e61SMark Adams     } else {
376ad4b5651SMark Adams       idx = -idx - 1;
377ad4b5651SMark Adams       for (q = 0, nc = 0; q < d_maps->num_face; q++, nc++) {
378ad4b5651SMark Adams         if (d_maps->c_maps[idx][q].gid < 0) break;
379ad4b5651SMark Adams         cols[q]     = d_maps->c_maps[idx][q].gid;
380ad4b5651SMark Adams         col_scale[q] = d_maps->c_maps[idx][q].scale;
3818a6f2e61SMark Adams       }
382ad4b5651SMark Adams     }
383bfc784b7SMark Adams 
384ad4b5651SMark Adams     for (q = 0; q < nr; q++) rows[q] = rows[q] + moffset;
385ad4b5651SMark Adams     for (q = 0; q < nc; q++) cols[q] = cols[q] + moffset;
3868a6f2e61SMark Adams     for (q = 0; q < nr; q++) {
3878a6f2e61SMark Adams       for (d = 0; d < nc; d++) {
388ad4b5651SMark Adams         vals[q*nc + d] = row_scale[q]*col_scale[d]*Aij;
3898a6f2e61SMark Adams       }
3908a6f2e61SMark Adams     }
391ad4b5651SMark Adams     MatSetValuesDevice(d_mat,nr,rows,nc,cols,vals,ADD_VALUES);
392bfc784b7SMark Adams   }
3938a6f2e61SMark Adams   return 0;
3948a6f2e61SMark Adams }
3958a6f2e61SMark Adams 
3968fdabdddSMark Adams PetscErrorCode LandauKokkosJacobian(DM plex[], const PetscInt Nq, const PetscInt batch_sz, const PetscInt num_grids, const PetscInt a_numCells[], PetscReal a_Eq_m[], PetscScalar a_elem_closure[],
397d2319daeSMark Adams                                     const PetscScalar a_xarray[], const LandauStaticData *SData_d, const PetscReal shift,
3988a6f2e61SMark Adams                                     const PetscLogEvent events[], const PetscInt a_mat_offset[], const PetscInt a_species_offset[], Mat subJ[], Mat JacP)
399e8d2b73aSMark Adams {
400e8d2b73aSMark Adams   using scr_mem_t = Kokkos::DefaultExecutionSpace::scratch_memory_space;
40119be780dSMark Adams   using real2_scr_t = Kokkos::View<PetscScalar**, Kokkos::LayoutRight, scr_mem_t>;
402e8d2b73aSMark Adams   using g2_scr_t = Kokkos::View<PetscReal***, Kokkos::LayoutRight, scr_mem_t>;
403e8d2b73aSMark Adams   using g3_scr_t = Kokkos::View<PetscReal****, Kokkos::LayoutRight, scr_mem_t>;
404e8d2b73aSMark Adams   PetscErrorCode    ierr;
4058fdabdddSMark Adams   PetscInt          Nb=Nq,dim,num_cells_max,Nf_max,num_cells_batch;
4068a6f2e61SMark Adams   int               nfaces=0;
407e8d2b73aSMark Adams   LandauCtx         *ctx;
408e8d2b73aSMark Adams   PetscReal         *d_Eq_m=NULL;
4098a6f2e61SMark Adams   PetscScalar       *d_vertex_f=NULL;
4108a6f2e61SMark Adams   P4estVertexMaps   *maps[LANDAU_MAX_GRIDS]; // this gets captured
4118a6f2e61SMark Adams   PetscSplitCSRDataStructure d_mat;
4128fdabdddSMark Adams   PetscContainer    container;
413bd08a171SMark Adams   const int         conc = Kokkos::DefaultExecutionSpace().concurrency(), openmp = !!(conc < 1000), team_size = (openmp==0) ? Nq : 1;
414bfc784b7SMark Adams   const PetscInt    coo_sz_batch = SData_d->coo_size/batch_sz; // capture
415e8d2b73aSMark Adams   auto              d_alpha_k = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->alpha); //static data
416e8d2b73aSMark Adams   const PetscReal   *d_alpha = d_alpha_k->data();
4178a6f2e61SMark Adams   const PetscInt    Nftot = d_alpha_k->size(); // total number of species
418e8d2b73aSMark Adams   auto              d_beta_k = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->beta);
419e8d2b73aSMark Adams   const PetscReal   *d_beta = d_beta_k->data();
420e8d2b73aSMark Adams   auto              d_invMass_k = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->invMass);
421e8d2b73aSMark Adams   const PetscReal   *d_invMass = d_invMass_k->data();
422e8d2b73aSMark Adams   auto              d_B_k = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->B);
423e8d2b73aSMark Adams   const PetscReal   *d_BB = d_B_k->data();
424e8d2b73aSMark Adams   auto              d_D_k = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->D);
425e8d2b73aSMark Adams   const PetscReal   *d_DD = d_D_k->data();
426e8d2b73aSMark Adams   auto              d_invJ_k = *static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->invJ);     // use Kokkos vector in kernels
427e8d2b73aSMark Adams   auto              d_x_k = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->x); //static data
428e8d2b73aSMark Adams   const PetscReal   *d_x = d_x_k->data();
429e8d2b73aSMark Adams   auto              d_y_k = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->y); //static data
430e8d2b73aSMark Adams   const PetscReal   *d_y = d_y_k->data();
431e8d2b73aSMark Adams   auto              d_z_k = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->z); //static data
4328a6f2e61SMark Adams   const PetscReal   *d_z = (LANDAU_DIM==3) ? d_z_k->data() : NULL;
4338a6f2e61SMark Adams   auto              d_w_k = *static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->w); //static data
4348a6f2e61SMark Adams   const PetscReal   *d_w = d_w_k.data();
4358fdabdddSMark Adams   // grid offsets - single vertex grid data
4368a6f2e61SMark Adams   auto              d_numCells_k = static_cast<Kokkos::View<PetscInt*, Kokkos::LayoutLeft>*>(SData_d->NCells);
4378a6f2e61SMark Adams   const PetscInt   *d_numCells = d_numCells_k->data();
4388a6f2e61SMark Adams   auto              d_species_offset_k = static_cast<Kokkos::View<PetscInt*, Kokkos::LayoutLeft>*>(SData_d->species_offset);
4398a6f2e61SMark Adams   const PetscInt   *d_species_offset = d_species_offset_k->data();
4408a6f2e61SMark Adams   auto              d_mat_offset_k = static_cast<Kokkos::View<PetscInt*, Kokkos::LayoutLeft>*>(SData_d->mat_offset);
4418a6f2e61SMark Adams   const PetscInt   *d_mat_offset = d_mat_offset_k->data();
4428a6f2e61SMark Adams   auto              d_ip_offset_k = static_cast<Kokkos::View<PetscInt*, Kokkos::LayoutLeft>*>(SData_d->ip_offset);
4438a6f2e61SMark Adams   const PetscInt   *d_ip_offset = d_ip_offset_k->data();
4448a6f2e61SMark Adams   auto              d_ipf_offset_k = static_cast<Kokkos::View<PetscInt*, Kokkos::LayoutLeft>*>(SData_d->ipf_offset);
4458a6f2e61SMark Adams   const PetscInt   *d_ipf_offset = d_ipf_offset_k->data();
4468a6f2e61SMark Adams   auto              d_elem_offset_k = static_cast<Kokkos::View<PetscInt*, Kokkos::LayoutLeft>*>(SData_d->elem_offset);
4478a6f2e61SMark Adams   const PetscInt   *d_elem_offset = d_elem_offset_k->data();
4488fdabdddSMark Adams #if defined(LANDAU_LAYOUT_LEFT)         // preallocate dynamic data, including batched vertices
4498fdabdddSMark Adams   Kokkos::View<PetscReal***, Kokkos::LayoutLeft > d_fdf_k = *static_cast<Kokkos::View<PetscReal***, Kokkos::LayoutLeft >*>(SData_d->ipfdf_data);
4508a6f2e61SMark Adams #else
4518fdabdddSMark Adams   Kokkos::View<PetscReal***, Kokkos::LayoutRight > d_fdf_k = *static_cast<Kokkos::View<PetscReal***, Kokkos::LayoutRight >*>(SData_d->ipfdf_data);
4528a6f2e61SMark Adams #endif
4538fdabdddSMark Adams   auto              d_Eq_m_k = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->Eq_m); // static storage, dynamci data - E(t), copy later, single vertex
454bfc784b7SMark Adams   // COO
455bfc784b7SMark Adams   auto d_coo_elem_offsets_k = static_cast<Kokkos::View<LandauIdx*, Kokkos::LayoutLeft>*>((void*)SData_d->coo_elem_offsets);
456bfc784b7SMark Adams   auto d_coo_elem_fullNb_k = static_cast<Kokkos::View<LandauIdx*, Kokkos::LayoutLeft>*>((void*)SData_d->coo_elem_fullNb);
457bfc784b7SMark Adams   auto d_coo_elem_point_offsets_k = static_cast<Kokkos::View<LandauIdx**, Kokkos::LayoutRight>*>((void*)SData_d->coo_elem_point_offsets);
458bfc784b7SMark Adams   Kokkos::View<PetscScalar*, Kokkos::LayoutRight,Kokkos::DefaultExecutionSpace> d_coo_vals_k("coo_vals", SData_d->coo_size); // device data (default space)
459bfc784b7SMark Adams   PetscScalar* d_coo_vals = (SData_d->coo_size==0) ? NULL : d_coo_vals_k.data();
4608fdabdddSMark Adams 
461e8d2b73aSMark Adams   PetscFunctionBegin;
462e8d2b73aSMark Adams   ierr = PetscLogEventBegin(events[3],0,0,0,0);CHKERRQ(ierr);
4638a6f2e61SMark Adams   ierr = DMGetApplicationContext(plex[0], &ctx);CHKERRQ(ierr);
4642c71b3e2SJacob Faibussowitsch   PetscCheckFalse(!ctx,PETSC_COMM_SELF, PETSC_ERR_PLIB, "no context");
4658a6f2e61SMark Adams   ierr = DMGetDimension(plex[0], &dim);CHKERRQ(ierr);
4662c71b3e2SJacob Faibussowitsch   PetscCheckFalse(LANDAU_DIM != dim,PETSC_COMM_WORLD, PETSC_ERR_PLIB, "dim %D != LANDAU_DIM %d",dim,LANDAU_DIM);
467a587d139SMark   if (ctx->gpu_assembly) {
468a587d139SMark     ierr = PetscObjectQuery((PetscObject) JacP, "assembly_maps", (PetscObject *) &container);CHKERRQ(ierr);
469bfc784b7SMark Adams     if (container) {
470a587d139SMark       P4estVertexMaps   *h_maps=NULL;
471a587d139SMark       ierr = PetscContainerGetPointer(container, (void **) &h_maps);CHKERRQ(ierr);
4728a6f2e61SMark Adams       for (PetscInt grid=0 ; grid<num_grids ; grid++) {
4738a6f2e61SMark Adams         if (h_maps[grid].d_self) {
4748a6f2e61SMark Adams           maps[grid] = h_maps[grid].d_self;
4758a6f2e61SMark Adams           nfaces = h_maps[grid].num_face; // nface=0 for CPU assembly
476a587d139SMark         } else {
477a587d139SMark           SETERRQ(PETSC_COMM_SELF, PETSC_ERR_PLIB, "GPU assembly but no metadata in container");
478a587d139SMark         }
4798a6f2e61SMark Adams       }
480bfc784b7SMark Adams       if (!d_coo_vals) {
481a587d139SMark         // this does the setup the first time called
482a587d139SMark         ierr = MatKokkosGetDeviceMatWrite(JacP,&d_mat);CHKERRQ(ierr);
483bfc784b7SMark Adams       } else {
4848fdabdddSMark Adams         d_mat = NULL;
485a587d139SMark       }
486bfc784b7SMark Adams     } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_PLIB, "GPU assembly but no metadata in container");
487a587d139SMark   } else {
4888a6f2e61SMark Adams     for (PetscInt grid=0 ; grid<num_grids ; grid++) maps[grid] = NULL;
4898a6f2e61SMark Adams     nfaces = 0;
4908fdabdddSMark Adams     d_mat = NULL;
4918fdabdddSMark Adams     container = NULL;
492a587d139SMark   }
4938fdabdddSMark Adams   num_cells_batch = Nf_max = num_cells_max = 0;
4948a6f2e61SMark Adams   for (PetscInt grid=0 ; grid<num_grids ; grid++) {
4958a6f2e61SMark Adams     int Nfloc = a_species_offset[grid+1] - a_species_offset[grid];
4968a6f2e61SMark Adams     if (Nfloc > Nf_max) Nf_max = Nfloc;
4978a6f2e61SMark Adams     if (a_numCells[grid] > num_cells_max) num_cells_max = a_numCells[grid];
4988fdabdddSMark Adams     num_cells_batch += a_numCells[grid]; // we don't have a host element offset here (but in ctx)
4998a6f2e61SMark Adams   }
5008a6f2e61SMark Adams   const PetscInt totDim_max = Nf_max*Nq, elem_mat_size_max = totDim_max*totDim_max;
5018a6f2e61SMark Adams   const PetscInt elem_mat_num_cells_max_grid = container ? 0 : num_cells_max;
5028fdabdddSMark Adams   Kokkos::View<PetscScalar****, Kokkos::LayoutRight> d_elem_mats("element matrices", batch_sz, num_grids, elem_mat_num_cells_max_grid, elem_mat_size_max); // first call have large set of global (Jac) element matrices
5038a6f2e61SMark Adams   const Kokkos::View<PetscReal*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> >  h_Eq_m_k (a_Eq_m, Nftot);
5048a6f2e61SMark Adams   if (a_elem_closure || a_xarray) {
505e8d2b73aSMark Adams     Kokkos::deep_copy (*d_Eq_m_k, h_Eq_m_k);
506e8d2b73aSMark Adams     d_Eq_m = d_Eq_m_k->data();
5078a6f2e61SMark Adams   } else d_Eq_m = NULL;
5088a6f2e61SMark Adams   ierr = PetscKokkosInitializeCheck();CHKERRQ(ierr);
5098a6f2e61SMark Adams   ierr = PetscLogEventEnd(events[3],0,0,0,0);CHKERRQ(ierr);
5108a6f2e61SMark Adams   if (a_elem_closure || a_xarray) { // Jacobian, create f & df
5118a6f2e61SMark Adams     Kokkos::View<PetscScalar*, Kokkos::LayoutLeft> *d_vertex_f_k = NULL;
5121eec90e4SMark Adams     ierr = PetscLogEventBegin(events[1],0,0,0,0);CHKERRQ(ierr);
5138a6f2e61SMark Adams     if (a_elem_closure) {
5148a6f2e61SMark Adams       PetscInt closure_sz = 0; // argh, don't have this on the host!!!
5158a6f2e61SMark Adams       for (PetscInt grid=0 ; grid<num_grids ; grid++) {
5168a6f2e61SMark Adams         PetscInt nfloc = a_species_offset[grid+1] - a_species_offset[grid];
5178a6f2e61SMark Adams         closure_sz     += Nq*nfloc*a_numCells[grid];
5188a6f2e61SMark Adams       }
5198fdabdddSMark Adams       closure_sz *= batch_sz;
5208a6f2e61SMark Adams       d_vertex_f_k = new Kokkos::View<PetscScalar*, Kokkos::LayoutLeft> ("closure",closure_sz);
5218a6f2e61SMark Adams       const Kokkos::View<PetscScalar*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_closure_k (a_elem_closure, closure_sz); // Vertex data for each element
5228a6f2e61SMark Adams       Kokkos::deep_copy (*d_vertex_f_k, h_closure_k);
5238a6f2e61SMark Adams       d_vertex_f  = d_vertex_f_k->data();
524af0767daSMark Adams     } else {
5258a6f2e61SMark Adams       d_vertex_f = (PetscScalar*)a_xarray;
526af0767daSMark Adams     }
527e8d2b73aSMark Adams     ierr = PetscLogEventEnd(events[1],0,0,0,0);CHKERRQ(ierr);
528930e68a5SMark Adams     ierr = PetscLogEventBegin(events[8],0,0,0,0);CHKERRQ(ierr);
529e6118d12SMark Adams     ierr = PetscLogGpuTimeBegin();CHKERRQ(ierr);
53019be780dSMark Adams 
53119be780dSMark Adams     const int scr_bytes_fdf = real2_scr_t::shmem_size(Nf_max,Nb);
5327d3de750SJacob Faibussowitsch     ierr = PetscInfo(plex[0], "Jacobian shared memory size: %d bytes in level %d num cells total=%D team size=%D #face=%D Nf_max=%D\n",scr_bytes_fdf,KOKKOS_SHARED_LEVEL,num_cells_batch*batch_sz,team_size,nfaces,Nf_max);CHKERRQ(ierr);
53319be780dSMark Adams     Kokkos::parallel_for("f, df", Kokkos::TeamPolicy<>(num_cells_batch*batch_sz, team_size, /* Kokkos::AUTO */ 16).set_scratch_size(KOKKOS_SHARED_LEVEL, Kokkos::PerTeam(scr_bytes_fdf)), KOKKOS_LAMBDA (const team_member team) {
5348fdabdddSMark Adams         const PetscInt b_Nelem = d_elem_offset[num_grids], b_elem_idx = team.league_rank()%b_Nelem, b_id = team.league_rank()/b_Nelem, IPf_sz_glb = d_ipf_offset[num_grids];
5358a6f2e61SMark Adams         // find my grid
5368fdabdddSMark Adams         PetscInt grid = 0;
5378fdabdddSMark Adams         while (b_elem_idx >= d_elem_offset[grid+1]) grid++;
5388a6f2e61SMark Adams         {
5398fdabdddSMark Adams           const PetscInt     loc_nip = d_numCells[grid]*Nq, loc_Nf = d_species_offset[grid+1] - d_species_offset[grid], loc_elem = b_elem_idx - d_elem_offset[grid];
5408fdabdddSMark Adams           const PetscInt     moffset = LAND_MOFFSET(b_id,grid,batch_sz,num_grids,d_mat_offset);
54119be780dSMark Adams           {
54219be780dSMark Adams             real2_scr_t    s_coef_k(team.team_scratch(KOKKOS_SHARED_LEVEL),Nf_max,Nb);
54319be780dSMark Adams             PetscScalar     *coef;
5448fdabdddSMark Adams             const PetscReal *invJe = &d_invJ_k((d_ip_offset[grid] + loc_elem*Nq)*dim*dim);
545a587d139SMark             // un pack IPData
5468a6f2e61SMark Adams             if (!maps[grid]) {
5478fdabdddSMark Adams               coef = &d_vertex_f[b_id*IPf_sz_glb + d_ipf_offset[grid] + loc_elem*Nb*loc_Nf]; // closure and IP indexing are the same
548af0767daSMark Adams             } else {
54919be780dSMark Adams               coef = s_coef_k.data();
55019be780dSMark Adams               Kokkos::parallel_for(Kokkos::TeamThreadRange(team,0,(int)loc_Nf), [=] (int f) {
55119be780dSMark Adams                   //for (int f = 0; f < loc_Nf; ++f) {
55219be780dSMark Adams                   Kokkos::parallel_for(Kokkos::ThreadVectorRange(team,0,(int)Nb), [=] (int b) {
55319be780dSMark Adams                       //for (int b = 0; b < Nb; ++b) {
55419be780dSMark Adams                       LandauIdx idx = maps[grid]->gIdx[loc_elem][f][b];
555af0767daSMark Adams                       if (idx >= 0) {
55619be780dSMark Adams                         coef[f*Nb+b] = d_vertex_f[idx+moffset]; // xarray data, not IP, need raw array to deal with CPU assemble case (not used)
557af0767daSMark Adams                       } else {
558af0767daSMark Adams                         idx = -idx - 1;
55919be780dSMark Adams                         coef[f*Nb+b] = 0;
5608a6f2e61SMark Adams                         for (int q = 0; q < maps[grid]->num_face; q++) {
5618a6f2e61SMark Adams                           PetscInt    id = maps[grid]->c_maps[idx][q].gid;
5628a6f2e61SMark Adams                           PetscScalar scale = maps[grid]->c_maps[idx][q].scale;
563f26f10aaSMark Adams                           if (id >= 0) coef[f*Nb+b] += scale*d_vertex_f[id+moffset];
564af0767daSMark Adams                         }
565af0767daSMark Adams                       }
56619be780dSMark Adams                     });
56719be780dSMark Adams                 });
568af0767daSMark Adams             }
56919be780dSMark Adams             team.team_barrier();
570a587d139SMark             Kokkos::parallel_for(Kokkos::TeamThreadRange(team,0,Nq), [=] (int myQi) {
5718fdabdddSMark Adams                 const PetscReal *const  invJ = &invJe[myQi*dim*dim]; // b_elem_idx: batch element index
572a587d139SMark                 const PetscReal         *Bq = &d_BB[myQi*Nb], *Dq = &d_DD[myQi*Nb*dim];
5738fdabdddSMark Adams                 Kokkos::parallel_for(Kokkos::ThreadVectorRange(team,0,(int)loc_Nf), [=] (int f) {
574a587d139SMark                     PetscInt   b, e, d;
575e8d2b73aSMark Adams                     PetscReal  refSpaceDer[LANDAU_DIM];
5768fdabdddSMark Adams                     const PetscInt idx = d_ipf_offset[grid] + f*loc_nip + loc_elem*Nq + myQi;
5778fdabdddSMark Adams                     d_fdf_k(b_id,0,idx) = 0.0;
578a587d139SMark                     for (d = 0; d < LANDAU_DIM; ++d) refSpaceDer[d] = 0.0;
579a587d139SMark                     for (b = 0; b < Nb; ++b) {
58019be780dSMark Adams                       d_fdf_k(b_id,0,idx) += Bq[b]*PetscRealPart(coef[f*Nb+b]);
58119be780dSMark Adams                       for (d = 0; d < dim; ++d) refSpaceDer[d] += Dq[b*dim+d]*PetscRealPart(coef[f*Nb+b]);
582a587d139SMark                     }
583a587d139SMark                     for (d = 0; d < dim; ++d) {
5848fdabdddSMark Adams                       for (e = 0, d_fdf_k(b_id,d+1,idx) = 0.0; e < dim; ++e) {
5858fdabdddSMark Adams                         d_fdf_k(b_id,d+1,idx) += invJ[e*dim+d]*refSpaceDer[e];
586a587d139SMark                       }
587a587d139SMark                     }
5888a6f2e61SMark Adams                   }); // f
5898a6f2e61SMark Adams               }); // myQi
5908a6f2e61SMark Adams           }
59119be780dSMark Adams           team.team_barrier();
59219be780dSMark Adams         } // 'grid' scope
5938a6f2e61SMark Adams       }); // global elems - fdf
5948a6f2e61SMark Adams     Kokkos::fence();
5958a6f2e61SMark Adams     ierr = PetscLogGpuTimeEnd();CHKERRQ(ierr); // is this a fence?
596930e68a5SMark Adams     ierr = PetscLogEventEnd(events[8],0,0,0,0);CHKERRQ(ierr);
597e6118d12SMark Adams     // Jacobian
59881451871SMark Adams     auto jac_lambda = KOKKOS_LAMBDA (const team_member team) {
5998fdabdddSMark Adams       const PetscInt b_Nelem = d_elem_offset[num_grids], b_elem_idx = team.league_rank()%b_Nelem, b_id = team.league_rank()/b_Nelem;
6008a6f2e61SMark Adams       // find my grid
6018fdabdddSMark Adams       PetscInt grid = 0;
6028fdabdddSMark Adams       while (b_elem_idx >= d_elem_offset[grid+1]) grid++;
6038a6f2e61SMark Adams       {
60419be780dSMark Adams         const PetscInt  loc_Nf = d_species_offset[grid+1]-d_species_offset[grid], loc_elem = b_elem_idx - d_elem_offset[grid];
6058fdabdddSMark Adams         const PetscInt  moffset = LAND_MOFFSET(b_id,grid,batch_sz,num_grids,d_mat_offset);
60619be780dSMark Adams         const PetscInt  f_off = d_species_offset[grid], totDim = loc_Nf*Nq;
6078fdabdddSMark Adams         g2_scr_t        g2(team.team_scratch(KOKKOS_SHARED_LEVEL),dim,loc_Nf,Nq);
6088fdabdddSMark Adams         g3_scr_t        g3(team.team_scratch(KOKKOS_SHARED_LEVEL),dim,dim,loc_Nf,Nq);
6098fdabdddSMark Adams         g2_scr_t        gg2(team.team_scratch(KOKKOS_SHARED_LEVEL),dim,loc_Nf,Nq);
6108fdabdddSMark Adams         g3_scr_t        gg3(team.team_scratch(KOKKOS_SHARED_LEVEL),dim,dim,loc_Nf,Nq);
611e0eea495SMark         // get g2[] & g3[]
612e0eea495SMark         Kokkos::parallel_for(Kokkos::TeamThreadRange(team,0,Nq), [=] (int myQi) {
613e0eea495SMark             using Kokkos::parallel_reduce;
6148fdabdddSMark Adams             const PetscInt  jpidx_glb = d_ip_offset[grid] + loc_elem * Nq + myQi;
6158fdabdddSMark Adams             const PetscReal *invJ = &d_invJ_k(jpidx_glb*dim*dim);
6168fdabdddSMark Adams             const PetscReal vj[3] = {d_x[jpidx_glb], d_y[jpidx_glb], d_z ? d_z[jpidx_glb] : 0}, wj = d_w[jpidx_glb];
6178a6f2e61SMark Adams             landau_inner_red::TensorValueType gg_temp; // reduce on part of gg2 and g33 for IP jpidx_g
6188fdabdddSMark Adams             Kokkos::parallel_reduce(Kokkos::ThreadVectorRange (team, (int)d_ip_offset[num_grids]), [=] (const int& ipidx, landau_inner_red::TensorValueType & ggg) {
619e8d2b73aSMark Adams                 const PetscReal wi = d_w[ipidx], x = d_x[ipidx], y = d_y[ipidx];
62052cdd6eaSMark                 PetscReal       temp1[3] = {0, 0, 0}, temp2 = 0;
6218fdabdddSMark Adams                 PetscInt        fieldA,d2,d3,f_off_r,grid_r,ipidx_g,nip_loc_r,loc_Nf_r;
622e0eea495SMark #if LANDAU_DIM==2
6238a6f2e61SMark Adams                 PetscReal Ud[2][2], Uk[2][2], mask = (PetscAbs(vj[0]-x) < 100*PETSC_SQRT_MACHINE_EPSILON && PetscAbs(vj[1]-y) < 100*PETSC_SQRT_MACHINE_EPSILON) ? 0. : 1.;
6248a6f2e61SMark Adams                 LandauTensor2D(vj, x, y, Ud, Uk, mask);
62552cdd6eaSMark #else
6267620afa1SMark Adams                 PetscReal U[3][3], z = d_z[ipidx], mask = (PetscAbs(vj[0]-x) < 100*PETSC_SQRT_MACHINE_EPSILON && PetscAbs(vj[1]-y) < 100*PETSC_SQRT_MACHINE_EPSILON && PetscAbs(vj[2]-z) < 100*PETSC_SQRT_MACHINE_EPSILON) ? 0. : 1.;
6278a6f2e61SMark Adams                 LandauTensor3D(vj, x, y, z, U, mask);
62852cdd6eaSMark #endif
6298a6f2e61SMark Adams                 grid_r = 0;
6308a6f2e61SMark Adams                 while (ipidx >= d_ip_offset[grid_r+1]) grid_r++; // yuck search for grid
6318a6f2e61SMark Adams                 f_off_r = d_species_offset[grid_r];
6328a6f2e61SMark Adams                 ipidx_g = ipidx - d_ip_offset[grid_r];
6338a6f2e61SMark Adams                 nip_loc_r = d_numCells[grid_r]*Nq;
6348fdabdddSMark Adams                 loc_Nf_r = d_species_offset[grid_r+1] - d_species_offset[grid_r];
6358fdabdddSMark Adams                 for (fieldA = 0; fieldA < loc_Nf_r; ++fieldA) {
6368fdabdddSMark Adams                   const PetscInt idx = d_ipf_offset[grid_r] + fieldA*nip_loc_r + ipidx_g;
6378fdabdddSMark Adams                   temp1[0] += d_fdf_k(b_id,1,idx)*d_beta[fieldA+f_off_r]*d_invMass[fieldA+f_off_r];
6388fdabdddSMark Adams                   temp1[1] += d_fdf_k(b_id,2,idx)*d_beta[fieldA+f_off_r]*d_invMass[fieldA+f_off_r];
63952cdd6eaSMark #if LANDAU_DIM==3
6408fdabdddSMark Adams                   temp1[2] += d_fdf_k(b_id,3,idx)*d_beta[fieldA+f_off_r]*d_invMass[fieldA+f_off_r];
64152cdd6eaSMark #endif
6428fdabdddSMark Adams                   temp2    += d_fdf_k(b_id,0,idx)*d_beta[fieldA+f_off_r];
64352cdd6eaSMark                 }
64452cdd6eaSMark                 temp1[0] *= wi;
64552cdd6eaSMark                 temp1[1] *= wi;
64652cdd6eaSMark #if LANDAU_DIM==3
64752cdd6eaSMark                 temp1[2] *= wi;
64852cdd6eaSMark #endif
64952cdd6eaSMark                 temp2    *= wi;
65052cdd6eaSMark #if LANDAU_DIM==2
65152cdd6eaSMark                 for (d2 = 0; d2 < 2; d2++) {
652e0eea495SMark                   for (d3 = 0; d3 < 2; ++d3) {
653e0eea495SMark                     /* K = U * grad(f): g2=e: i,A */
65452cdd6eaSMark                     ggg.gg2[d2] += Uk[d2][d3]*temp1[d3];
655e0eea495SMark                     /* D = -U * (I \kron (fx)): g3=f: i,j,A */
65652cdd6eaSMark                     ggg.gg3[d2][d3] += Ud[d2][d3]*temp2;
657e0eea495SMark                   }
658e0eea495SMark                 }
659e0eea495SMark #else
660e0eea495SMark                 for (d2 = 0; d2 < 3; ++d2) {
661e0eea495SMark                   for (d3 = 0; d3 < 3; ++d3) {
662e0eea495SMark                     /* K = U * grad(f): g2 = e: i,A */
66352cdd6eaSMark                     ggg.gg2[d2] += U[d2][d3]*temp1[d3];
664e0eea495SMark                     /* D = -U * (I \kron (fx)): g3 = f: i,j,A */
66552cdd6eaSMark                     ggg.gg3[d2][d3] += U[d2][d3]*temp2;
666e0eea495SMark                   }
667e0eea495SMark                 }
668e0eea495SMark #endif
66952cdd6eaSMark               }, Kokkos::Sum<landau_inner_red::TensorValueType>(gg_temp));
67052cdd6eaSMark             // add alpha and put in gg2/3
6718fdabdddSMark Adams             Kokkos::parallel_for(Kokkos::ThreadVectorRange (team, (int)loc_Nf), [&] (const int& fieldA) {
67252cdd6eaSMark                 PetscInt d2,d3;
67352cdd6eaSMark                 for (d2 = 0; d2 < dim; d2++) {
6748a6f2e61SMark Adams                   gg2(d2,fieldA,myQi) = gg_temp.gg2[d2]*d_alpha[fieldA+f_off];
67552cdd6eaSMark                   for (d3 = 0; d3 < dim; d3++) {
6768a6f2e61SMark Adams                     gg3(d2,d3,fieldA,myQi) = -gg_temp.gg3[d2][d3]*d_alpha[fieldA+f_off]*d_invMass[fieldA+f_off];
67752cdd6eaSMark                   }
67852cdd6eaSMark                 }
679e0eea495SMark               });
68052cdd6eaSMark             /* add electric field term once per IP */
6818fdabdddSMark Adams             Kokkos::parallel_for(Kokkos::ThreadVectorRange (team, (int)loc_Nf), [&] (const int& fieldA) {
6828a6f2e61SMark Adams                 gg2(dim-1,fieldA,myQi) += d_Eq_m[fieldA+f_off];
68352cdd6eaSMark               });
6848fdabdddSMark Adams             Kokkos::parallel_for(Kokkos::ThreadVectorRange (team, (int)loc_Nf), [=] (const int& fieldA) {
685e0eea495SMark                 int d,d2,d3,dp;
686e0eea495SMark                 /* Jacobian transform - g2, g3 - per thread (2D) */
687e0eea495SMark                 for (d = 0; d < dim; ++d) {
68852cdd6eaSMark                   g2(d,fieldA,myQi) = 0;
689e0eea495SMark                   for (d2 = 0; d2 < dim; ++d2) {
6908fdabdddSMark Adams                     g2(d,fieldA,myQi) += invJ[d*dim+d2]*gg2(d2,fieldA,myQi);
69152cdd6eaSMark                     g3(d,d2,fieldA,myQi) = 0;
692e0eea495SMark                     for (d3 = 0; d3 < dim; ++d3) {
693e0eea495SMark                       for (dp = 0; dp < dim; ++dp) {
6948fdabdddSMark Adams                         g3(d,d2,fieldA,myQi) += invJ[d*dim + d3]*gg3(d3,dp,fieldA,myQi)*invJ[d2*dim + dp];
695e0eea495SMark                       }
696e0eea495SMark                     }
69752cdd6eaSMark                     g3(d,d2,fieldA,myQi) *= wj;
698e0eea495SMark                   }
69952cdd6eaSMark                   g2(d,fieldA,myQi) *= wj;
700e0eea495SMark                 }
701e0eea495SMark               });
70252cdd6eaSMark           }); // Nq
703e0eea495SMark         team.team_barrier();
7041eec90e4SMark Adams         { /* assemble */
7058fdabdddSMark Adams           for (PetscInt fieldA = 0; fieldA < loc_Nf; fieldA++) {
706930e68a5SMark Adams             /* assemble */
7071eec90e4SMark Adams             Kokkos::parallel_for(Kokkos::TeamThreadRange(team,0,Nb), [=] (int f) {
7081eec90e4SMark Adams                 Kokkos::parallel_for(Kokkos::ThreadVectorRange(team,0,Nb), [=] (int g) {
7091eec90e4SMark Adams                     PetscScalar t = 0;
7101eec90e4SMark Adams                     for (int qj = 0 ; qj < Nq ; qj++) { // look at others integration points
711e0eea495SMark                       const PetscReal *BJq = &d_BB[qj*Nb], *DIq = &d_DD[qj*Nb*dim];
7121eec90e4SMark Adams                       for (int d = 0; d < dim; ++d) {
7131eec90e4SMark Adams                         t += DIq[f*dim+d]*g2(d,fieldA,qj)*BJq[g];
7141eec90e4SMark Adams                         for (int d2 = 0; d2 < dim; ++d2) {
7151eec90e4SMark Adams                           t += DIq[f*dim + d]*g3(d,d2,fieldA,qj)*DIq[g*dim + d2];
716e0eea495SMark                         }
717e0eea495SMark                       }
718930e68a5SMark Adams                     }
7198a6f2e61SMark Adams                     if (elem_mat_num_cells_max_grid) { // CPU assembly
7201eec90e4SMark Adams                       const PetscInt fOff = (fieldA*Nb + f)*totDim + fieldA*Nb + g;
7218fdabdddSMark Adams                       d_elem_mats(b_id,grid,loc_elem,fOff) = t;
72219be780dSMark Adams                     } else {
723bfc784b7SMark Adams                       landau_mat_assemble (d_mat, d_coo_vals, t, f, g, Nb, moffset, loc_elem, fieldA, maps[grid], d_coo_elem_offsets_k->data(), d_coo_elem_fullNb_k->data(), *d_coo_elem_point_offsets_k, b_elem_idx, b_id*coo_sz_batch);
72419be780dSMark Adams                     }
7251eec90e4SMark Adams                   });
7261eec90e4SMark Adams               });
7271eec90e4SMark Adams           }
728a587d139SMark         }
72919be780dSMark Adams       } // scope with 'grid'
73081451871SMark Adams     };
73181451871SMark Adams     ierr = PetscLogEventBegin(events[4],0,0,0,0);CHKERRQ(ierr);
73281451871SMark Adams     ierr = PetscLogGpuTimeBegin();CHKERRQ(ierr);
733ad4b5651SMark Adams     const int scr_bytes = 2*(g2_scr_t::shmem_size(dim,Nf_max,Nq) + g3_scr_t::shmem_size(dim,dim,Nf_max,Nq));
73481451871SMark Adams     Kokkos::parallel_for("Jacobian", Kokkos::TeamPolicy<Kokkos::LaunchBounds<512,1>>(num_cells_batch*batch_sz, team_size, /* Kokkos::AUTO */ 16).set_scratch_size(KOKKOS_SHARED_LEVEL, Kokkos::PerTeam(scr_bytes)), jac_lambda);
735e6118d12SMark Adams     ierr = PetscLogGpuTimeEnd();CHKERRQ(ierr);
7361eec90e4SMark Adams     ierr = PetscLogEventEnd(events[4],0,0,0,0);CHKERRQ(ierr);
73719be780dSMark Adams     if (d_vertex_f_k) delete d_vertex_f_k;
738*13241b68SMark Adams   } else { // mass - 2*Nb is guess at max size (2D Q3 is 31 =< 2*Nb = 32)
739*13241b68SMark Adams     using fieldMats_scr_t = Kokkos::View<PetscScalar*, Kokkos::LayoutRight, scr_mem_t>;
740*13241b68SMark Adams     PetscInt loc_ass_sz = 1; // captured
741e607c864SMark Adams     ierr = PetscLogEventBegin(events[16],0,0,0,0);CHKERRQ(ierr);
742e6118d12SMark Adams     ierr = PetscLogGpuTimeBegin();CHKERRQ(ierr);
743*13241b68SMark Adams     if (loc_ass_sz) loc_ass_sz = ctx->SData_d.coo_max_fullnb*ctx->SData_d.coo_max_fullnb;
744*13241b68SMark Adams     int scr_bytes = fieldMats_scr_t::shmem_size(loc_ass_sz); // + idx_scr_t::shmem_size(Nb,nfaces) + scale_scr_t::shmem_size(Nb,nfaces);
745*13241b68SMark Adams     ierr = PetscInfo(plex[0], "Mass shared memory size: %d bytes in level %d conc=%D team size=%D #face=%D Nb=%D, %s assembly\n",scr_bytes,KOKKOS_SHARED_LEVEL,conc,team_size,nfaces,Nb, d_coo_vals ? (loc_ass_sz==0 ? "COO" : "optimized COO") : "CSR");CHKERRQ(ierr);
746*13241b68SMark Adams     Kokkos::parallel_for("Mass", Kokkos::TeamPolicy<>(num_cells_batch*batch_sz, team_size, /* Kokkos::AUTO */ 16).set_scratch_size(KOKKOS_SHARED_LEVEL, Kokkos::PerTeam(scr_bytes)), KOKKOS_LAMBDA (const team_member team) {
747*13241b68SMark Adams         fieldMats_scr_t s_fieldMats(team.team_scratch(KOKKOS_SHARED_LEVEL),loc_ass_sz); // Only used for GPU assembly (ie, not first pass)
7488fdabdddSMark Adams         const PetscInt  b_Nelem = d_elem_offset[num_grids], b_elem_idx = team.league_rank()%b_Nelem, b_id = team.league_rank()/b_Nelem;
7498a6f2e61SMark Adams         // find my grid
7508fdabdddSMark Adams         PetscInt grid = 0;
7518fdabdddSMark Adams         while (b_elem_idx >= d_elem_offset[grid+1]) grid++;
7528a6f2e61SMark Adams         {
7538fdabdddSMark Adams           const PetscInt loc_Nf = d_species_offset[grid+1]-d_species_offset[grid], loc_elem = b_elem_idx - d_elem_offset[grid], totDim = loc_Nf*Nq, jpidx_0 = d_ip_offset[grid] + loc_elem * Nq;
7548fdabdddSMark Adams           const PetscInt moffset = LAND_MOFFSET(b_id,grid,batch_sz,num_grids,d_mat_offset);
7558fdabdddSMark Adams           for (int fieldA = 0; fieldA < loc_Nf; fieldA++) {
7561eec90e4SMark Adams             /* assemble */
7571eec90e4SMark Adams             Kokkos::parallel_for(Kokkos::TeamThreadRange(team,0,Nb), [=] (int f) {
7581eec90e4SMark Adams                 Kokkos::parallel_for(Kokkos::ThreadVectorRange(team,0,Nb), [=] (int g) {
7591eec90e4SMark Adams                     PetscScalar    t = 0;
7601eec90e4SMark Adams                     for (int qj = 0 ; qj < Nq ; qj++) { // look at others integration points
7611eec90e4SMark Adams                       const PetscReal *BJq = &d_BB[qj*Nb];
7628fdabdddSMark Adams                       const PetscInt jpidx_glb = jpidx_0 + qj;
7638a6f2e61SMark Adams                       if (dim==2) {
7648fdabdddSMark Adams                         t += BJq[f] * d_w_k(jpidx_glb) * shift * BJq[g] * 2. * PETSC_PI;
7658a6f2e61SMark Adams                       } else {
7668fdabdddSMark Adams                         t += BJq[f] * d_w_k(jpidx_glb) * shift * BJq[g];
7671eec90e4SMark Adams                       }
7688a6f2e61SMark Adams                     }
7698a6f2e61SMark Adams                     if (elem_mat_num_cells_max_grid) {
7701eec90e4SMark Adams                       const PetscInt fOff = (fieldA*Nb + f)*totDim + fieldA*Nb + g;
7718fdabdddSMark Adams                       d_elem_mats(b_id,grid,loc_elem,fOff) = t;
772ad4b5651SMark Adams                     } else {
773*13241b68SMark Adams                       if (d_coo_vals && loc_ass_sz) {
774*13241b68SMark Adams                         PetscInt               idx,q,nr,nc;
775*13241b68SMark Adams                         const LandauIdx *const Idxs = &maps[grid]->gIdx[loc_elem][fieldA][0];
776*13241b68SMark Adams                         PetscScalar            row_scale[LANDAU_MAX_Q_FACE]={0},col_scale[LANDAU_MAX_Q_FACE]={0};
777*13241b68SMark Adams                         const int              fullNb = (*d_coo_elem_fullNb_k)(b_elem_idx), num_face = maps[grid]->num_face;
778*13241b68SMark Adams                         const PetscScalar      Aij = t;
779*13241b68SMark Adams                         idx = Idxs[f];
780*13241b68SMark Adams                         if (idx >= 0) {
781*13241b68SMark Adams                           nr = 1;
782*13241b68SMark Adams                           row_scale[0] = 1.;
783*13241b68SMark Adams                         } else {
784*13241b68SMark Adams                           idx = -idx - 1;
785*13241b68SMark Adams                           for (q = 0, nr = 0; q < num_face; q++, nr++) {
786*13241b68SMark Adams                             if (maps[grid]->c_maps[idx][q].gid < 0) break;
787*13241b68SMark Adams                             row_scale[q] = maps[grid]->c_maps[idx][q].scale;
788*13241b68SMark Adams                           }
789*13241b68SMark Adams                         }
790*13241b68SMark Adams                         idx = Idxs[g];
791*13241b68SMark Adams                         if (idx >= 0) {
792*13241b68SMark Adams                           nc = 1;
793*13241b68SMark Adams                           col_scale[0] = 1.;
794*13241b68SMark Adams                         } else {
795*13241b68SMark Adams                           idx = -idx - 1;
796*13241b68SMark Adams                           for (q = 0, nc = 0; q < num_face; q++, nc++) {
797*13241b68SMark Adams                             if (maps[grid]->c_maps[idx][q].gid < 0) break;
798*13241b68SMark Adams                             col_scale[q] = maps[grid]->c_maps[idx][q].scale;
799*13241b68SMark Adams                           }
800*13241b68SMark Adams                         }
801*13241b68SMark Adams                         const int idx0 = fullNb * (*d_coo_elem_point_offsets_k)(b_elem_idx,f) + nr * (*d_coo_elem_point_offsets_k)(b_elem_idx,g);
802*13241b68SMark Adams                         for (int q = 0, idx2 = idx0; q < nr; q++) {
803*13241b68SMark Adams                           for (int d = 0; d < nc; d++, idx2++) {
804*13241b68SMark Adams                             s_fieldMats(idx2) = row_scale[q]*col_scale[d]*Aij;
805*13241b68SMark Adams                           }
806*13241b68SMark Adams                         }
807*13241b68SMark Adams                       } else {
808bfc784b7SMark Adams                         landau_mat_assemble (d_mat, d_coo_vals, t, f, g, Nb, moffset, loc_elem, fieldA, maps[grid], d_coo_elem_offsets_k->data(), d_coo_elem_fullNb_k->data(), *d_coo_elem_point_offsets_k, b_elem_idx, b_id*coo_sz_batch);
809ad4b5651SMark Adams                       }
810*13241b68SMark Adams                     }
811e0eea495SMark                   });
812e0eea495SMark               });
813*13241b68SMark Adams             if (!elem_mat_num_cells_max_grid) {
814*13241b68SMark Adams               if (d_coo_vals && loc_ass_sz) {
815*13241b68SMark Adams                 const int fullNb = (*d_coo_elem_fullNb_k)(b_elem_idx), fullNb2=fullNb*fullNb;
816*13241b68SMark Adams                 const int idx0 =  b_id*coo_sz_batch + (*d_coo_elem_offsets_k)(b_elem_idx) + fieldA*fullNb2;
817*13241b68SMark Adams                 team.team_barrier();
818*13241b68SMark Adams #if 0
819*13241b68SMark Adams                 Kokkos::parallel_for(Kokkos::ThreadVectorRange(team,0,fullNb), [=] (int gg) {
820*13241b68SMark Adams                   Kokkos::parallel_for(Kokkos::TeamThreadRange(team,0,fullNb), [=] (int ff) {
821*13241b68SMark Adams                         const int idx = fullNb * ff + gg;
822*13241b68SMark Adams                         d_coo_vals[idx0 + idx] = s_fieldMats(idx);
823*13241b68SMark Adams                       });
824*13241b68SMark Adams                   });
825*13241b68SMark Adams #else
826*13241b68SMark Adams                 Kokkos::parallel_for(Kokkos::TeamVectorRange(team,0,fullNb2), [=] (int idx) { d_coo_vals[idx0 + idx] = s_fieldMats(idx); });
827*13241b68SMark Adams #endif
8281eec90e4SMark Adams               }
8291eec90e4SMark Adams             }
830*13241b68SMark Adams           } // field
831*13241b68SMark Adams         } // grid
8321eec90e4SMark Adams       });
833e6118d12SMark Adams     ierr = PetscLogGpuTimeEnd();CHKERRQ(ierr);
834e607c864SMark Adams     ierr = PetscLogEventEnd(events[16],0,0,0,0);CHKERRQ(ierr);
8351eec90e4SMark Adams   }
836e8d2b73aSMark Adams   Kokkos::fence();
837bfc784b7SMark Adams   if (d_coo_vals) {
838bfc784b7SMark Adams     ierr = MatSetValuesCOO(JacP,d_coo_vals,ADD_VALUES);CHKERRQ(ierr);
839bfc784b7SMark Adams   } else if (elem_mat_num_cells_max_grid) { // CPU assembly
8408fdabdddSMark Adams     Kokkos::View<PetscScalar****, Kokkos::LayoutRight>::HostMirror h_elem_mats = Kokkos::create_mirror_view(d_elem_mats);
841e0eea495SMark     Kokkos::deep_copy (h_elem_mats, d_elem_mats);
842d618d24fSMark Adams      PetscCheck(!container,PETSC_COMM_SELF, PETSC_ERR_PLIB, "?????");
8438fdabdddSMark Adams     for (PetscInt b_id = 0 ; b_id < batch_sz ; b_id++) { // OpenMP (once)
8448a6f2e61SMark Adams       for (PetscInt grid=0 ; grid<num_grids ; grid++) {
8458a6f2e61SMark Adams         PetscSection      section, globalSection;
8468a6f2e61SMark Adams         PetscInt          cStart,cEnd;
8478fdabdddSMark Adams         Mat               B = subJ[ LAND_PACK_IDX(b_id,grid) ];
8488fdabdddSMark Adams         PetscInt          moffset = LAND_MOFFSET(b_id,grid,batch_sz,num_grids,a_mat_offset), nloc, nzl, colbuf[1024], row;
8498fdabdddSMark Adams         const PetscInt    *cols;
8508fdabdddSMark Adams         const PetscScalar *vals;
8518a6f2e61SMark Adams         ierr = PetscLogEventBegin(events[5],0,0,0,0);CHKERRQ(ierr);
8528a6f2e61SMark Adams         ierr = DMPlexGetHeightStratum(plex[grid],0,&cStart,&cEnd);CHKERRQ(ierr);
8538a6f2e61SMark Adams         ierr = DMGetLocalSection(plex[grid], &section);CHKERRQ(ierr);
8548a6f2e61SMark Adams         ierr = DMGetGlobalSection(plex[grid], &globalSection);CHKERRQ(ierr);
855e0eea495SMark         ierr = PetscLogEventEnd(events[5],0,0,0,0);CHKERRQ(ierr);
856e0eea495SMark         ierr = PetscLogEventBegin(events[6],0,0,0,0);CHKERRQ(ierr);
8578a6f2e61SMark Adams         for (PetscInt ej = cStart ; ej < cEnd; ++ej) {
8588fdabdddSMark Adams           const PetscScalar *elMat = &h_elem_mats(b_id,grid,ej-cStart,0);
8598fdabdddSMark Adams           ierr = DMPlexMatSetClosure(plex[grid], section, globalSection, B, ej, elMat, ADD_VALUES);CHKERRQ(ierr);
8608a6f2e61SMark Adams           if (grid==0 && ej==-1) {
8618fdabdddSMark Adams             const PetscInt  loc_Nf = a_species_offset[grid+1]-a_species_offset[grid], totDim = loc_Nf*Nq;
862e0eea495SMark             int d,f;
8638a6f2e61SMark Adams             PetscPrintf(PETSC_COMM_SELF,"Kokkos Element matrix %d/%d\n",1,(int)a_numCells[grid]);
864e0eea495SMark             for (d = 0; d < totDim; ++d){
86552cdd6eaSMark               for (f = 0; f < totDim; ++f) PetscPrintf(PETSC_COMM_SELF," %12.5e",  PetscRealPart(elMat[d*totDim + f]));
86652cdd6eaSMark               PetscPrintf(PETSC_COMM_SELF,"\n");
867e0eea495SMark             }
868e8d2b73aSMark Adams             exit(14);
869e0eea495SMark           }
870e0eea495SMark         }
8718fdabdddSMark Adams         // move nest matrix to global JacP
8728a6f2e61SMark Adams         ierr = MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
8738a6f2e61SMark Adams         ierr = MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr);
8748a6f2e61SMark Adams         ierr = MatGetSize(B, &nloc, NULL);CHKERRQ(ierr);
8758a6f2e61SMark Adams         for (int i=0 ; i<nloc ; i++) {
8768a6f2e61SMark Adams           ierr = MatGetRow(B,i,&nzl,&cols,&vals);CHKERRQ(ierr);
8772c71b3e2SJacob Faibussowitsch           PetscCheckFalse(nzl>1024,PetscObjectComm((PetscObject) B), PETSC_ERR_PLIB, "Row too big: %D",nzl);
8788a6f2e61SMark Adams           for (int j=0; j<nzl; j++) colbuf[j] = cols[j] + moffset;
8798a6f2e61SMark Adams           row = i + moffset;
8808a6f2e61SMark Adams           ierr = MatSetValues(JacP,1,&row,nzl,colbuf,vals,ADD_VALUES);CHKERRQ(ierr);
8818a6f2e61SMark Adams           ierr = MatRestoreRow(B,i,&nzl,&cols,&vals);CHKERRQ(ierr);
8828a6f2e61SMark Adams         }
8838fdabdddSMark Adams         ierr = MatDestroy(&subJ[ LAND_PACK_IDX(b_id,grid) ]);CHKERRQ(ierr);
8848a6f2e61SMark Adams         ierr = PetscLogEventEnd(events[6],0,0,0,0);CHKERRQ(ierr);
8858a6f2e61SMark Adams       } // grids
886a587d139SMark     }
8878fdabdddSMark Adams   }
888e0eea495SMark   PetscFunctionReturn(0);
889e0eea495SMark }
890e0eea495SMark } // extern "C"
891