1e0eea495SMark /* 2e0eea495SMark Implements the Kokkos kernel 3e0eea495SMark */ 4e0eea495SMark #include <petscconf.h> 511d22bbfSJunchao Zhang #include <petscvec_kokkos.hpp> 6e0eea495SMark #include <petsc/private/dmpleximpl.h> /*I "petscdmplex.h" I*/ 7e0eea495SMark #include <petsclandau.h> 8e0eea495SMark #include <petscts.h> 9a587d139SMark 10e0eea495SMark #include <Kokkos_Core.hpp> 11e0eea495SMark #include <cstdio> 12e0eea495SMark typedef Kokkos::TeamPolicy<>::member_type team_member; 13e0eea495SMark #include "../land_tensors.h" 14a587d139SMark #include <petscaijdevice.h> 15e0eea495SMark 16e0eea495SMark namespace landau_inner_red { // namespace helps with name resolution in reduction identity 1752cdd6eaSMark template< class ScalarType > 18e0eea495SMark struct array_type { 1952cdd6eaSMark ScalarType gg2[LANDAU_DIM]; 2052cdd6eaSMark ScalarType gg3[LANDAU_DIM][LANDAU_DIM]; 21e0eea495SMark 22e0eea495SMark KOKKOS_INLINE_FUNCTION // Default constructor - Initialize to 0's 23e0eea495SMark array_type() { 24e0eea495SMark for (int j = 0; j < LANDAU_DIM; j++) { 2552cdd6eaSMark gg2[j] = 0; 26e0eea495SMark for (int k = 0; k < LANDAU_DIM; k++) { 2752cdd6eaSMark gg3[j][k] = 0; 28e0eea495SMark } 29e0eea495SMark } 30e0eea495SMark } 31e0eea495SMark KOKKOS_INLINE_FUNCTION // Copy Constructor 32e0eea495SMark array_type(const array_type & rhs) { 33e0eea495SMark for (int j = 0; j < LANDAU_DIM; j++) { 3452cdd6eaSMark gg2[j] = rhs.gg2[j]; 35e0eea495SMark for (int k = 0; k < LANDAU_DIM; k++) { 3652cdd6eaSMark gg3[j][k] = rhs.gg3[j][k]; 37e0eea495SMark } 38e0eea495SMark } 39e0eea495SMark } 40e0eea495SMark KOKKOS_INLINE_FUNCTION // add operator 4170a7d78aSStefano Zampini array_type& operator += (const array_type& src) 4270a7d78aSStefano Zampini { 43e0eea495SMark for (int j = 0; j < LANDAU_DIM; j++) { 4452cdd6eaSMark gg2[j] += src.gg2[j]; 45e0eea495SMark for (int k = 0; k < LANDAU_DIM; k++) { 4652cdd6eaSMark gg3[j][k] += src.gg3[j][k]; 47e0eea495SMark } 48e0eea495SMark } 49e0eea495SMark return *this; 50e0eea495SMark } 51e0eea495SMark KOKKOS_INLINE_FUNCTION // volatile add operator 5270a7d78aSStefano Zampini void operator += (const volatile array_type& src) volatile 5370a7d78aSStefano Zampini { 54e0eea495SMark for (int j = 0; j < LANDAU_DIM; j++) { 5552cdd6eaSMark gg2[j] += src.gg2[j]; 56e0eea495SMark for (int k = 0; k < LANDAU_DIM; k++) { 5752cdd6eaSMark gg3[j][k] += src.gg3[j][k]; 58e0eea495SMark } 59e0eea495SMark } 60e0eea495SMark } 61e0eea495SMark }; 6252cdd6eaSMark typedef array_type<PetscReal> TensorValueType; // used to simplify code below 63e0eea495SMark } 64e0eea495SMark 65e0eea495SMark namespace Kokkos { //reduction identity must be defined in Kokkos namespace 66e0eea495SMark template<> 6752cdd6eaSMark struct reduction_identity< landau_inner_red::TensorValueType > { 6852cdd6eaSMark KOKKOS_FORCEINLINE_FUNCTION static landau_inner_red::TensorValueType sum() { 6952cdd6eaSMark return landau_inner_red::TensorValueType(); 70e0eea495SMark } 71e0eea495SMark }; 72e0eea495SMark } 73e0eea495SMark 74e0eea495SMark extern "C" { 758a6f2e61SMark Adams PetscErrorCode LandauKokkosCreateMatMaps(P4estVertexMaps maps[], pointInterpolationP4est (*pointMaps)[LANDAU_MAX_Q_FACE], PetscInt Nf[], PetscInt Nq, PetscInt grid) 76a587d139SMark { 77a587d139SMark P4estVertexMaps h_maps; /* host container */ 788a6f2e61SMark Adams const Kokkos::View<pointInterpolationP4est*[LANDAU_MAX_Q_FACE], Kokkos::LayoutRight, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_points ((pointInterpolationP4est*)pointMaps, maps[grid].num_reduced); 798a6f2e61SMark Adams const Kokkos::View< LandauIdx*[LANDAU_MAX_SPECIES][LANDAU_MAX_NQ], Kokkos::LayoutRight, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_gidx ((LandauIdx*)maps[grid].gIdx, maps[grid].num_elements); 808a6f2e61SMark Adams Kokkos::View<pointInterpolationP4est*[LANDAU_MAX_Q_FACE], Kokkos::LayoutRight> *d_points = new Kokkos::View<pointInterpolationP4est*[LANDAU_MAX_Q_FACE], Kokkos::LayoutRight>("points", maps[grid].num_reduced); 818a6f2e61SMark Adams Kokkos::View<LandauIdx*[LANDAU_MAX_SPECIES][LANDAU_MAX_NQ], Kokkos::LayoutRight> *d_gidx = new Kokkos::View<LandauIdx*[LANDAU_MAX_SPECIES][LANDAU_MAX_NQ], Kokkos::LayoutRight>("gIdx", maps[grid].num_elements); 82a587d139SMark 83a587d139SMark PetscFunctionBegin; 84a587d139SMark Kokkos::deep_copy (*d_gidx, h_gidx); 85a587d139SMark Kokkos::deep_copy (*d_points, h_points); 868a6f2e61SMark Adams h_maps.num_elements = maps[grid].num_elements; 878a6f2e61SMark Adams h_maps.num_face = maps[grid].num_face; 888a6f2e61SMark Adams h_maps.num_reduced = maps[grid].num_reduced; 898a6f2e61SMark Adams h_maps.deviceType = maps[grid].deviceType; 908a6f2e61SMark Adams h_maps.numgrids = maps[grid].numgrids; 918a6f2e61SMark Adams h_maps.Nf = Nf[grid]; 92a587d139SMark h_maps.Nq = Nq; 93a587d139SMark h_maps.c_maps = (pointInterpolationP4est (*)[LANDAU_MAX_Q_FACE]) d_points->data(); 948a6f2e61SMark Adams maps[grid].vp1 = (void*)d_points; 95a587d139SMark h_maps.gIdx = (LandauIdx (*)[LANDAU_MAX_SPECIES][LANDAU_MAX_NQ]) d_gidx->data(); 968a6f2e61SMark Adams maps[grid].vp2 = (void*)d_gidx; 97a587d139SMark { 98a587d139SMark Kokkos::View<P4estVertexMaps, Kokkos::HostSpace> h_maps_k(&h_maps); 9911d22bbfSJunchao Zhang Kokkos::View<P4estVertexMaps> *d_maps_k = new Kokkos::View<P4estVertexMaps>(Kokkos::create_mirror(Kokkos::DefaultExecutionSpace::memory_space(),h_maps_k)); 100a587d139SMark Kokkos::deep_copy (*d_maps_k, h_maps_k); 1018a6f2e61SMark Adams maps[grid].d_self = d_maps_k->data(); 1028a6f2e61SMark Adams maps[grid].vp3 = (void*)d_maps_k; 103a587d139SMark } 104a587d139SMark PetscFunctionReturn(0); 105a587d139SMark } 1068a6f2e61SMark Adams PetscErrorCode LandauKokkosDestroyMatMaps(P4estVertexMaps maps[], PetscInt num_grids) 107a587d139SMark { 108362febeeSStefano Zampini PetscFunctionBegin; 1098a6f2e61SMark Adams for (PetscInt grid=0;grid<num_grids;grid++) { 1108a6f2e61SMark Adams auto a = static_cast<Kokkos::View<pointInterpolationP4est*[LANDAU_MAX_Q_FACE], Kokkos::LayoutRight>*>(maps[grid].vp1); 1118a6f2e61SMark Adams auto b = static_cast<Kokkos::View<LandauIdx*[LANDAU_MAX_SPECIES][LANDAU_MAX_NQ], Kokkos::LayoutRight>*>(maps[grid].vp2); 1128a6f2e61SMark Adams auto c = static_cast<Kokkos::View<P4estVertexMaps*>*>(maps[grid].vp3); 113a587d139SMark delete a; delete b; delete c; 1148a6f2e61SMark Adams } 115a587d139SMark PetscFunctionReturn(0); 116a587d139SMark } 117a587d139SMark 118*8fdabdddSMark Adams PetscErrorCode LandauKokkosStaticDataSet(DM plex, const PetscInt Nq, const PetscInt batch_sz, const PetscInt num_grids, 119*8fdabdddSMark Adams PetscInt a_numCells[], PetscInt a_species_offset[], PetscInt a_mat_offset[], 1208a6f2e61SMark Adams PetscReal a_nu_alpha[], PetscReal a_nu_beta[], PetscReal a_invMass[], PetscReal a_invJ[], 1218a6f2e61SMark Adams PetscReal a_x[], PetscReal a_y[], PetscReal a_z[], PetscReal a_w[], LandauStaticData *SData_d) 122e0eea495SMark { 123e0eea495SMark PetscReal *BB,*DD; 124e8d2b73aSMark Adams PetscErrorCode ierr; 125e8d2b73aSMark Adams PetscTabulation *Tf; 1268a6f2e61SMark Adams PetscInt dim; 1278a6f2e61SMark Adams PetscInt Nb=Nq,ip_offset[LANDAU_MAX_GRIDS+1],ipf_offset[LANDAU_MAX_GRIDS+1],elem_offset[LANDAU_MAX_GRIDS+1],nip,IPf_sz,Nftot; 128e8d2b73aSMark Adams PetscDS prob; 129e0eea495SMark 130e0eea495SMark PetscFunctionBegin; 131e0eea495SMark ierr = DMGetDimension(plex, &dim);CHKERRQ(ierr); 132e0eea495SMark ierr = DMGetDS(plex, &prob);CHKERRQ(ierr); 13352cdd6eaSMark if (LANDAU_DIM != dim) SETERRQ2(PETSC_COMM_WORLD, PETSC_ERR_PLIB, "dim %D != LANDAU_DIM %d",dim,LANDAU_DIM); 134e0eea495SMark ierr = PetscDSGetTabulation(prob, &Tf);CHKERRQ(ierr); 135e8d2b73aSMark Adams BB = Tf[0]->T[0]; DD = Tf[0]->T[1]; 1368a6f2e61SMark Adams ip_offset[0] = ipf_offset[0] = elem_offset[0] = 0; 1378a6f2e61SMark Adams nip = 0; 1388a6f2e61SMark Adams IPf_sz = 0; 1398a6f2e61SMark Adams for (PetscInt grid=0 ; grid<num_grids ; grid++) { 1408a6f2e61SMark Adams PetscInt nfloc = a_species_offset[grid+1] - a_species_offset[grid]; 1418a6f2e61SMark Adams elem_offset[grid+1] = elem_offset[grid] + a_numCells[grid]; 1428a6f2e61SMark Adams nip += a_numCells[grid]*Nq; 1438a6f2e61SMark Adams ip_offset[grid+1] = nip; 1448a6f2e61SMark Adams IPf_sz += Nq*nfloc*a_numCells[grid]; 1458a6f2e61SMark Adams ipf_offset[grid+1] = IPf_sz; 1468a6f2e61SMark Adams } 1478a6f2e61SMark Adams Nftot = a_species_offset[num_grids]; 148e8d2b73aSMark Adams ierr = PetscKokkosInitializeCheck();CHKERRQ(ierr); 149e8d2b73aSMark Adams { 1508a6f2e61SMark Adams const Kokkos::View<PetscReal*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_alpha (a_nu_alpha, Nftot); 1518a6f2e61SMark Adams auto alpha = new Kokkos::View<PetscReal*, Kokkos::LayoutLeft> ("alpha", Nftot); 152e8d2b73aSMark Adams SData_d->alpha = static_cast<void*>(alpha); 1538a6f2e61SMark Adams const Kokkos::View<PetscReal*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_beta (a_nu_beta, Nftot); 1548a6f2e61SMark Adams auto beta = new Kokkos::View<PetscReal*, Kokkos::LayoutLeft> ("beta", Nftot); 155e8d2b73aSMark Adams SData_d->beta = static_cast<void*>(beta); 1568a6f2e61SMark Adams const Kokkos::View<PetscReal*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_invMass (a_invMass,Nftot); 1578a6f2e61SMark Adams auto invMass = new Kokkos::View<PetscReal*, Kokkos::LayoutLeft> ("invMass", Nftot); 158e8d2b73aSMark Adams SData_d->invMass = static_cast<void*>(invMass); 159e8d2b73aSMark Adams const Kokkos::View<PetscReal*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_BB (BB,Nq*Nb); 160e8d2b73aSMark Adams auto B = new Kokkos::View<PetscReal*, Kokkos::LayoutLeft> ("B", Nq*Nb); 161e8d2b73aSMark Adams SData_d->B = static_cast<void*>(B); 162e8d2b73aSMark Adams const Kokkos::View<PetscReal*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_DD (DD,Nq*Nb*dim); 163e8d2b73aSMark Adams auto D = new Kokkos::View<PetscReal*, Kokkos::LayoutLeft> ("D", Nq*Nb*dim); 164e8d2b73aSMark Adams SData_d->D = static_cast<void*>(D); 165e8d2b73aSMark Adams const Kokkos::View<PetscReal*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_invJ (a_invJ, nip*dim*dim); 166e8d2b73aSMark Adams auto invJ = new Kokkos::View<PetscReal*, Kokkos::LayoutLeft> ("invJ", nip*dim*dim); 167e8d2b73aSMark Adams SData_d->invJ = static_cast<void*>(invJ); 168e8d2b73aSMark Adams const Kokkos::View<PetscReal*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_x (a_x, nip); 169e8d2b73aSMark Adams auto x = new Kokkos::View<PetscReal*, Kokkos::LayoutLeft> ("x", nip); 170e8d2b73aSMark Adams SData_d->x = static_cast<void*>(x); 171e8d2b73aSMark Adams const Kokkos::View<PetscReal*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_y (a_y, nip); 172e8d2b73aSMark Adams auto y = new Kokkos::View<PetscReal*, Kokkos::LayoutLeft> ("y", nip); 173e8d2b73aSMark Adams SData_d->y = static_cast<void*>(y); 174e8d2b73aSMark Adams const Kokkos::View<PetscReal*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_w (a_w, nip); 175e8d2b73aSMark Adams auto w = new Kokkos::View<PetscReal*, Kokkos::LayoutLeft> ("w", nip); 176e8d2b73aSMark Adams SData_d->w = static_cast<void*>(w); 177e8d2b73aSMark Adams 178e8d2b73aSMark Adams Kokkos::deep_copy (*alpha, h_alpha); 179e8d2b73aSMark Adams Kokkos::deep_copy (*beta, h_beta); 180e8d2b73aSMark Adams Kokkos::deep_copy (*invMass, h_invMass); 181e8d2b73aSMark Adams Kokkos::deep_copy (*B, h_BB); 182e8d2b73aSMark Adams Kokkos::deep_copy (*D, h_DD); 183e8d2b73aSMark Adams Kokkos::deep_copy (*invJ, h_invJ); 184e8d2b73aSMark Adams Kokkos::deep_copy (*x, h_x); 185e8d2b73aSMark Adams Kokkos::deep_copy (*y, h_y); 186e8d2b73aSMark Adams Kokkos::deep_copy (*w, h_w); 187e8d2b73aSMark Adams 1888a6f2e61SMark Adams if (dim==3) { 1898a6f2e61SMark Adams const Kokkos::View<PetscReal*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_z (a_z , dim==3 ? nip : 0); 1908a6f2e61SMark Adams auto z = new Kokkos::View<PetscReal*, Kokkos::LayoutLeft> ("z", nip); 1918a6f2e61SMark Adams SData_d->z = static_cast<void*>(z); 1928a6f2e61SMark Adams Kokkos::deep_copy (*z, h_z); 1938a6f2e61SMark Adams } else SData_d->z = NULL; 1948a6f2e61SMark Adams 1958a6f2e61SMark Adams // 1968a6f2e61SMark Adams const Kokkos::View<PetscInt*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_NCells (a_numCells, num_grids); 1978a6f2e61SMark Adams auto nc = new Kokkos::View<PetscInt*, Kokkos::LayoutLeft> ("NCells",num_grids); 1988a6f2e61SMark Adams SData_d->NCells = static_cast<void*>(nc); 1998a6f2e61SMark Adams Kokkos::deep_copy (*nc, h_NCells); 2008a6f2e61SMark Adams 2018a6f2e61SMark Adams const Kokkos::View<PetscInt*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_species_offset (a_species_offset, num_grids+1); 2028a6f2e61SMark Adams auto soff = new Kokkos::View<PetscInt*, Kokkos::LayoutLeft> ("species_offset",num_grids+1); 2038a6f2e61SMark Adams SData_d->species_offset = static_cast<void*>(soff); 2048a6f2e61SMark Adams Kokkos::deep_copy (*soff, h_species_offset); 2058a6f2e61SMark Adams 2068a6f2e61SMark Adams const Kokkos::View<PetscInt*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_mat_offset (a_mat_offset, num_grids+1); 2078a6f2e61SMark Adams auto moff = new Kokkos::View<PetscInt*, Kokkos::LayoutLeft> ("mat_offset",num_grids+1); 2088a6f2e61SMark Adams SData_d->mat_offset = static_cast<void*>(moff); 2098a6f2e61SMark Adams Kokkos::deep_copy (*moff, h_mat_offset); 2108a6f2e61SMark Adams 2118a6f2e61SMark Adams const Kokkos::View<PetscInt*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_ip_offset (ip_offset, num_grids+1); 2128a6f2e61SMark Adams auto ipoff = new Kokkos::View<PetscInt*, Kokkos::LayoutLeft> ("ip_offset",num_grids+1); 2138a6f2e61SMark Adams SData_d->ip_offset = static_cast<void*>(ipoff); 2148a6f2e61SMark Adams Kokkos::deep_copy (*ipoff, h_ip_offset); 2158a6f2e61SMark Adams 2168a6f2e61SMark Adams const Kokkos::View<PetscInt*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_elem_offset (elem_offset, num_grids+1); 2178a6f2e61SMark Adams auto eoff = new Kokkos::View<PetscInt*, Kokkos::LayoutLeft> ("elem_offset",num_grids+1); 2188a6f2e61SMark Adams SData_d->elem_offset = static_cast<void*>(eoff); 2198a6f2e61SMark Adams Kokkos::deep_copy (*eoff, h_elem_offset); 2208a6f2e61SMark Adams 2218a6f2e61SMark Adams const Kokkos::View<PetscInt*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_ipf_offset (ipf_offset, num_grids+1); 2228a6f2e61SMark Adams auto ipfoff = new Kokkos::View<PetscInt*, Kokkos::LayoutLeft> ("ipf_offset",num_grids+1); 2238a6f2e61SMark Adams SData_d->ipf_offset = static_cast<void*>(ipfoff); 2248a6f2e61SMark Adams Kokkos::deep_copy (*ipfoff, h_ipf_offset); 2258a6f2e61SMark Adams #if defined(LANDAU_LAYOUT_LEFT) // preallocate dynamic data, no copy 226*8fdabdddSMark Adams auto ipfdf_data = new Kokkos::View<PetscReal***, Kokkos::LayoutLeft > ("fdf", batch_sz, dim+1, IPf_sz); 2278a6f2e61SMark Adams #else 228*8fdabdddSMark Adams auto ipfdf_data = new Kokkos::View<PetscReal***, Kokkos::LayoutRight > ("fdf",batch_sz, dim+1, IPf_sz); 2298a6f2e61SMark Adams #endif 2308a6f2e61SMark Adams SData_d->ipfdf_data = static_cast<void*>(ipfdf_data); 231*8fdabdddSMark Adams auto Eq_m = new Kokkos::View<PetscReal*, Kokkos::LayoutLeft> ("Eq_m",Nftot); // allocate but do not set, same for whole batch 232e8d2b73aSMark Adams SData_d->Eq_m = static_cast<void*>(Eq_m); 233e8d2b73aSMark Adams } 2348a6f2e61SMark Adams SData_d->maps = NULL; // not used 235e8d2b73aSMark Adams PetscFunctionReturn(0); 236e8d2b73aSMark Adams } 237e8d2b73aSMark Adams 2388a6f2e61SMark Adams PetscErrorCode LandauKokkosStaticDataClear(LandauStaticData *SData_d) 239e8d2b73aSMark Adams { 240e8d2b73aSMark Adams PetscFunctionBegin; 241e8d2b73aSMark Adams if (SData_d->alpha) { 242e8d2b73aSMark Adams auto alpha = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->alpha); 243e8d2b73aSMark Adams delete alpha; 2448a6f2e61SMark Adams SData_d->alpha = NULL; 245e8d2b73aSMark Adams auto beta = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->beta); 246e8d2b73aSMark Adams delete beta; 247e8d2b73aSMark Adams auto invMass = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->invMass); 248e8d2b73aSMark Adams delete invMass; 249e8d2b73aSMark Adams auto B = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->B); 250e8d2b73aSMark Adams delete B; 251e8d2b73aSMark Adams auto D = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->D); 252e8d2b73aSMark Adams delete D; 253e8d2b73aSMark Adams auto invJ = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->invJ); 254e8d2b73aSMark Adams delete invJ; 255e8d2b73aSMark Adams auto x = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->x); 256e8d2b73aSMark Adams delete x; 257e8d2b73aSMark Adams auto y = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->y); 258e8d2b73aSMark Adams delete y; 2598a6f2e61SMark Adams if (SData_d->z) { 260e8d2b73aSMark Adams auto z = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->z); 261e8d2b73aSMark Adams delete z; 2628a6f2e61SMark Adams } 2638a6f2e61SMark Adams #if defined(LANDAU_LAYOUT_LEFT) // preallocate dynamic data, no copy 264*8fdabdddSMark Adams auto z = static_cast<Kokkos::View<PetscReal***, Kokkos::LayoutLeft>*>(SData_d->ipfdf_data); 2658a6f2e61SMark Adams #else 266*8fdabdddSMark Adams auto z = static_cast<Kokkos::View<PetscReal***, Kokkos::LayoutRight>*>(SData_d->ipfdf_data); 2678a6f2e61SMark Adams #endif 2688a6f2e61SMark Adams delete z; 269e8d2b73aSMark Adams auto w = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->w); 270e8d2b73aSMark Adams delete w; 271e8d2b73aSMark Adams auto Eq_m = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->Eq_m); 272e8d2b73aSMark Adams delete Eq_m; 2738a6f2e61SMark Adams // offset 2748a6f2e61SMark Adams auto nc = static_cast<Kokkos::View<PetscInt*, Kokkos::LayoutLeft>*>(SData_d->NCells); 2758a6f2e61SMark Adams delete nc; 2768a6f2e61SMark Adams auto soff = static_cast<Kokkos::View<PetscInt*, Kokkos::LayoutLeft>*>(SData_d->species_offset); 2778a6f2e61SMark Adams delete soff; 2788a6f2e61SMark Adams auto moff = static_cast<Kokkos::View<PetscInt*, Kokkos::LayoutLeft>*>(SData_d->mat_offset); 2798a6f2e61SMark Adams delete moff; 2808a6f2e61SMark Adams auto ipoff = static_cast<Kokkos::View<PetscInt*, Kokkos::LayoutLeft>*>(SData_d->ip_offset); 2818a6f2e61SMark Adams delete ipoff; 2828a6f2e61SMark Adams auto eoff = static_cast<Kokkos::View<PetscInt*, Kokkos::LayoutLeft>*>(SData_d->elem_offset); 2838a6f2e61SMark Adams delete eoff; 2848a6f2e61SMark Adams auto ipfoff = static_cast<Kokkos::View<PetscInt*, Kokkos::LayoutLeft>*>(SData_d->ipf_offset); 2858a6f2e61SMark Adams delete ipfoff; 286af0767daSMark Adams } 287e8d2b73aSMark Adams PetscFunctionReturn(0); 288e8d2b73aSMark Adams } 289e8d2b73aSMark Adams 2908a6f2e61SMark Adams #define KOKKOS_SHARED_LEVEL 1 2918a6f2e61SMark Adams KOKKOS_INLINE_FUNCTION 2928a6f2e61SMark Adams PetscErrorCode landau_mat_assemble(PetscSplitCSRDataStructure d_mat, const team_member team, 2938a6f2e61SMark Adams Kokkos::View<PetscScalar**, Kokkos::LayoutRight, Kokkos::DefaultExecutionSpace::scratch_memory_space> s_fieldMats, 2948a6f2e61SMark Adams Kokkos::View<PetscInt**, Kokkos::LayoutRight, Kokkos::DefaultExecutionSpace::scratch_memory_space> s_idx, 2958a6f2e61SMark Adams Kokkos::View<PetscReal**, Kokkos::LayoutRight, Kokkos::DefaultExecutionSpace::scratch_memory_space> s_scale, 2968a6f2e61SMark Adams const PetscInt Nb, const PetscInt Nq, const PetscInt nfaces, const PetscInt moffset, const PetscInt elem, const PetscInt fieldA, const P4estVertexMaps *d_maps) 2978a6f2e61SMark Adams { 2988a6f2e61SMark Adams const LandauIdx *const Idxs = &d_maps->gIdx[elem][fieldA][0]; 2998a6f2e61SMark Adams team.team_barrier(); 3008a6f2e61SMark Adams Kokkos::parallel_for(Kokkos::TeamVectorRange(team,0,Nb), [=] (int f) { 3018a6f2e61SMark Adams PetscInt q, idx = Idxs[f]; 3028a6f2e61SMark Adams if (idx >= 0) { 3038a6f2e61SMark Adams s_idx(f,0) = idx + moffset; 3048a6f2e61SMark Adams s_scale(f,0) = 1.; 3058a6f2e61SMark Adams } else { 3068a6f2e61SMark Adams idx = -idx - 1; 3078a6f2e61SMark Adams for (q = 0; q < nfaces; q++) { 3088a6f2e61SMark Adams s_idx(f,q) = d_maps->c_maps[idx][q].gid + moffset; 3098a6f2e61SMark Adams s_scale(f,q) = d_maps->c_maps[idx][q].scale; 3108a6f2e61SMark Adams } 3118a6f2e61SMark Adams } 3128a6f2e61SMark Adams }); 3138a6f2e61SMark Adams team.team_barrier(); 3148a6f2e61SMark Adams Kokkos::parallel_for(Kokkos::TeamThreadRange(team,0,Nb), [=] (int f) { 3158a6f2e61SMark Adams PetscInt nr,idx = Idxs[f]; 3168a6f2e61SMark Adams if (idx >= 0) { 3178a6f2e61SMark Adams nr = 1; 3188a6f2e61SMark Adams } else { 3198a6f2e61SMark Adams nr = nfaces; 3208a6f2e61SMark Adams } 3218a6f2e61SMark Adams Kokkos::parallel_for(Kokkos::ThreadVectorRange(team,0,Nb), [=] (int g) { 3228a6f2e61SMark Adams PetscScalar vals[LANDAU_MAX_Q_FACE*LANDAU_MAX_Q_FACE]; 3238a6f2e61SMark Adams PetscInt q,d,nc,idx = Idxs[g]; 3248a6f2e61SMark Adams if (idx >= 0) { 3258a6f2e61SMark Adams nc = 1; 3268a6f2e61SMark Adams } else { 3278a6f2e61SMark Adams nc = nfaces; 3288a6f2e61SMark Adams } 3298a6f2e61SMark Adams for (q = 0; q < nr; q++) { 3308a6f2e61SMark Adams for (d = 0; d < nc; d++) { 3318a6f2e61SMark Adams vals[q*nc + d] = s_scale(f,q)*s_scale(g,d)*s_fieldMats(f,g); 3328a6f2e61SMark Adams } 3338a6f2e61SMark Adams } 3348a6f2e61SMark Adams MatSetValuesDevice(d_mat,nr,&s_idx(f,0),nc,&s_idx(g,0),vals,ADD_VALUES); 3358a6f2e61SMark Adams }); 3368a6f2e61SMark Adams }); 3378a6f2e61SMark Adams return 0; 3388a6f2e61SMark Adams } 3398a6f2e61SMark Adams 340*8fdabdddSMark Adams PetscErrorCode LandauKokkosJacobian(DM plex[], const PetscInt Nq, const PetscInt batch_sz, const PetscInt num_grids, const PetscInt a_numCells[], PetscReal a_Eq_m[], PetscScalar a_elem_closure[], 3418a6f2e61SMark Adams const PetscInt N, const PetscScalar a_xarray[], const LandauStaticData *SData_d, const PetscInt num_sub_blocks, const PetscReal shift, 3428a6f2e61SMark Adams const PetscLogEvent events[], const PetscInt a_mat_offset[], const PetscInt a_species_offset[], Mat subJ[], Mat JacP) 343e8d2b73aSMark Adams { 344e8d2b73aSMark Adams using scr_mem_t = Kokkos::DefaultExecutionSpace::scratch_memory_space; 3451eec90e4SMark Adams using fieldMats_scr_t = Kokkos::View<PetscScalar**, Kokkos::LayoutRight, scr_mem_t>; 3461eec90e4SMark Adams using idx_scr_t = Kokkos::View<PetscInt**, Kokkos::LayoutRight, scr_mem_t>; 3471eec90e4SMark Adams using scale_scr_t = Kokkos::View<PetscReal**, Kokkos::LayoutRight, scr_mem_t>; 348e8d2b73aSMark Adams using g2_scr_t = Kokkos::View<PetscReal***, Kokkos::LayoutRight, scr_mem_t>; 349e8d2b73aSMark Adams using g3_scr_t = Kokkos::View<PetscReal****, Kokkos::LayoutRight, scr_mem_t>; 350e8d2b73aSMark Adams PetscErrorCode ierr; 351*8fdabdddSMark Adams PetscInt Nb=Nq,dim,num_cells_max,Nf_max,num_cells_batch; 3528a6f2e61SMark Adams int nfaces=0; 353e8d2b73aSMark Adams LandauCtx *ctx; 354e8d2b73aSMark Adams PetscReal *d_Eq_m=NULL; 3558a6f2e61SMark Adams PetscScalar *d_vertex_f=NULL; 3568a6f2e61SMark Adams P4estVertexMaps *maps[LANDAU_MAX_GRIDS]; // this gets captured 3578a6f2e61SMark Adams PetscSplitCSRDataStructure d_mat; 358*8fdabdddSMark Adams PetscContainer container; 359bd08a171SMark Adams const int conc = Kokkos::DefaultExecutionSpace().concurrency(), openmp = !!(conc < 1000), team_size = (openmp==0) ? Nq : 1; 360e8d2b73aSMark Adams auto d_alpha_k = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->alpha); //static data 361e8d2b73aSMark Adams const PetscReal *d_alpha = d_alpha_k->data(); 3628a6f2e61SMark Adams const PetscInt Nftot = d_alpha_k->size(); // total number of species 363e8d2b73aSMark Adams auto d_beta_k = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->beta); 364e8d2b73aSMark Adams const PetscReal *d_beta = d_beta_k->data(); 365e8d2b73aSMark Adams auto d_invMass_k = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->invMass); 366e8d2b73aSMark Adams const PetscReal *d_invMass = d_invMass_k->data(); 367e8d2b73aSMark Adams auto d_B_k = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->B); 368e8d2b73aSMark Adams const PetscReal *d_BB = d_B_k->data(); 369e8d2b73aSMark Adams auto d_D_k = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->D); 370e8d2b73aSMark Adams const PetscReal *d_DD = d_D_k->data(); 371e8d2b73aSMark Adams auto d_invJ_k = *static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->invJ); // use Kokkos vector in kernels 372e8d2b73aSMark Adams auto d_x_k = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->x); //static data 373e8d2b73aSMark Adams const PetscReal *d_x = d_x_k->data(); 374e8d2b73aSMark Adams auto d_y_k = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->y); //static data 375e8d2b73aSMark Adams const PetscReal *d_y = d_y_k->data(); 376e8d2b73aSMark Adams auto d_z_k = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->z); //static data 3778a6f2e61SMark Adams const PetscReal *d_z = (LANDAU_DIM==3) ? d_z_k->data() : NULL; 3788a6f2e61SMark Adams auto d_w_k = *static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->w); //static data 3798a6f2e61SMark Adams const PetscReal *d_w = d_w_k.data(); 380*8fdabdddSMark Adams // grid offsets - single vertex grid data 3818a6f2e61SMark Adams auto d_numCells_k = static_cast<Kokkos::View<PetscInt*, Kokkos::LayoutLeft>*>(SData_d->NCells); 3828a6f2e61SMark Adams const PetscInt *d_numCells = d_numCells_k->data(); 3838a6f2e61SMark Adams auto d_species_offset_k = static_cast<Kokkos::View<PetscInt*, Kokkos::LayoutLeft>*>(SData_d->species_offset); 3848a6f2e61SMark Adams const PetscInt *d_species_offset = d_species_offset_k->data(); 3858a6f2e61SMark Adams auto d_mat_offset_k = static_cast<Kokkos::View<PetscInt*, Kokkos::LayoutLeft>*>(SData_d->mat_offset); 3868a6f2e61SMark Adams const PetscInt *d_mat_offset = d_mat_offset_k->data(); 3878a6f2e61SMark Adams auto d_ip_offset_k = static_cast<Kokkos::View<PetscInt*, Kokkos::LayoutLeft>*>(SData_d->ip_offset); 3888a6f2e61SMark Adams const PetscInt *d_ip_offset = d_ip_offset_k->data(); 3898a6f2e61SMark Adams auto d_ipf_offset_k = static_cast<Kokkos::View<PetscInt*, Kokkos::LayoutLeft>*>(SData_d->ipf_offset); 3908a6f2e61SMark Adams const PetscInt *d_ipf_offset = d_ipf_offset_k->data(); 3918a6f2e61SMark Adams auto d_elem_offset_k = static_cast<Kokkos::View<PetscInt*, Kokkos::LayoutLeft>*>(SData_d->elem_offset); 3928a6f2e61SMark Adams const PetscInt *d_elem_offset = d_elem_offset_k->data(); 393*8fdabdddSMark Adams #if defined(LANDAU_LAYOUT_LEFT) // preallocate dynamic data, including batched vertices 394*8fdabdddSMark Adams Kokkos::View<PetscReal***, Kokkos::LayoutLeft > d_fdf_k = *static_cast<Kokkos::View<PetscReal***, Kokkos::LayoutLeft >*>(SData_d->ipfdf_data); 3958a6f2e61SMark Adams #else 396*8fdabdddSMark Adams Kokkos::View<PetscReal***, Kokkos::LayoutRight > d_fdf_k = *static_cast<Kokkos::View<PetscReal***, Kokkos::LayoutRight >*>(SData_d->ipfdf_data); 3978a6f2e61SMark Adams #endif 398*8fdabdddSMark Adams auto d_Eq_m_k = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->Eq_m); // static storage, dynamci data - E(t), copy later, single vertex 399*8fdabdddSMark Adams 400e8d2b73aSMark Adams PetscFunctionBegin; 401e8d2b73aSMark Adams ierr = PetscLogEventBegin(events[3],0,0,0,0);CHKERRQ(ierr); 4028a6f2e61SMark Adams ierr = DMGetApplicationContext(plex[0], &ctx);CHKERRQ(ierr); 403e8d2b73aSMark Adams if (!ctx) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_PLIB, "no context"); 4048a6f2e61SMark Adams ierr = DMGetDimension(plex[0], &dim);CHKERRQ(ierr); 405e8d2b73aSMark Adams if (LANDAU_DIM != dim) SETERRQ2(PETSC_COMM_WORLD, PETSC_ERR_PLIB, "dim %D != LANDAU_DIM %d",dim,LANDAU_DIM); 406a587d139SMark if (ctx->gpu_assembly) { 407a587d139SMark ierr = PetscObjectQuery((PetscObject) JacP, "assembly_maps", (PetscObject *) &container);CHKERRQ(ierr); 408a587d139SMark if (container) { // not here first call 409a587d139SMark P4estVertexMaps *h_maps=NULL; 410a587d139SMark ierr = PetscContainerGetPointer(container, (void **) &h_maps);CHKERRQ(ierr); 4118a6f2e61SMark Adams for (PetscInt grid=0 ; grid<num_grids ; grid++) { 4128a6f2e61SMark Adams if (h_maps[grid].d_self) { 4138a6f2e61SMark Adams maps[grid] = h_maps[grid].d_self; 4148a6f2e61SMark Adams nfaces = h_maps[grid].num_face; // nface=0 for CPU assembly 415a587d139SMark } else { 416a587d139SMark SETERRQ(PETSC_COMM_SELF, PETSC_ERR_PLIB, "GPU assembly but no metadata in container"); 417a587d139SMark } 4188a6f2e61SMark Adams } 419a587d139SMark // this does the setup the first time called 420a587d139SMark ierr = MatKokkosGetDeviceMatWrite(JacP,&d_mat);CHKERRQ(ierr); 421a587d139SMark } else { // kernel output - first call assembled on device 4228a6f2e61SMark Adams for (PetscInt grid=0 ; grid<num_grids ; grid++) maps[grid] = NULL; 4238a6f2e61SMark Adams nfaces = 0; 424*8fdabdddSMark Adams d_mat = NULL; 425a587d139SMark } 426a587d139SMark } else { 4278a6f2e61SMark Adams for (PetscInt grid=0 ; grid<num_grids ; grid++) maps[grid] = NULL; 4288a6f2e61SMark Adams nfaces = 0; 429*8fdabdddSMark Adams d_mat = NULL; 430*8fdabdddSMark Adams container = NULL; 431a587d139SMark } 432*8fdabdddSMark Adams num_cells_batch = Nf_max = num_cells_max = 0; 4338a6f2e61SMark Adams for (PetscInt grid=0 ; grid<num_grids ; grid++) { 4348a6f2e61SMark Adams int Nfloc = a_species_offset[grid+1] - a_species_offset[grid]; 4358a6f2e61SMark Adams if (Nfloc > Nf_max) Nf_max = Nfloc; 4368a6f2e61SMark Adams if (a_numCells[grid] > num_cells_max) num_cells_max = a_numCells[grid]; 437*8fdabdddSMark Adams num_cells_batch += a_numCells[grid]; // we don't have a host element offset here (but in ctx) 4388a6f2e61SMark Adams } 4398a6f2e61SMark Adams const PetscInt totDim_max = Nf_max*Nq, elem_mat_size_max = totDim_max*totDim_max; 4408a6f2e61SMark Adams const PetscInt elem_mat_num_cells_max_grid = container ? 0 : num_cells_max; 441*8fdabdddSMark Adams Kokkos::View<PetscScalar****, Kokkos::LayoutRight> d_elem_mats("element matrices", batch_sz, num_grids, elem_mat_num_cells_max_grid, elem_mat_size_max); // first call have large set of global (Jac) element matrices 4428a6f2e61SMark Adams const Kokkos::View<PetscReal*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_Eq_m_k (a_Eq_m, Nftot); 4438a6f2e61SMark Adams if (a_elem_closure || a_xarray) { 444e8d2b73aSMark Adams Kokkos::deep_copy (*d_Eq_m_k, h_Eq_m_k); 445e8d2b73aSMark Adams d_Eq_m = d_Eq_m_k->data(); 4468a6f2e61SMark Adams } else d_Eq_m = NULL; 4478a6f2e61SMark Adams ierr = PetscKokkosInitializeCheck();CHKERRQ(ierr); 4488a6f2e61SMark Adams ierr = PetscLogEventEnd(events[3],0,0,0,0);CHKERRQ(ierr); 4498a6f2e61SMark Adams if (a_elem_closure || a_xarray) { // Jacobian, create f & df 4508a6f2e61SMark Adams Kokkos::View<PetscScalar*, Kokkos::LayoutLeft> *d_vertex_f_k = NULL; 4511eec90e4SMark Adams ierr = PetscLogEventBegin(events[1],0,0,0,0);CHKERRQ(ierr); 4528a6f2e61SMark Adams if (a_elem_closure) { 4538a6f2e61SMark Adams PetscInt closure_sz = 0; // argh, don't have this on the host!!! 4548a6f2e61SMark Adams for (PetscInt grid=0 ; grid<num_grids ; grid++) { 4558a6f2e61SMark Adams PetscInt nfloc = a_species_offset[grid+1] - a_species_offset[grid]; 4568a6f2e61SMark Adams closure_sz += Nq*nfloc*a_numCells[grid]; 4578a6f2e61SMark Adams } 458*8fdabdddSMark Adams closure_sz *= batch_sz; 4598a6f2e61SMark Adams d_vertex_f_k = new Kokkos::View<PetscScalar*, Kokkos::LayoutLeft> ("closure",closure_sz); 4608a6f2e61SMark Adams const Kokkos::View<PetscScalar*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_closure_k (a_elem_closure, closure_sz); // Vertex data for each element 4618a6f2e61SMark Adams Kokkos::deep_copy (*d_vertex_f_k, h_closure_k); 4628a6f2e61SMark Adams d_vertex_f = d_vertex_f_k->data(); 463af0767daSMark Adams } else { 4648a6f2e61SMark Adams d_vertex_f = (PetscScalar*)a_xarray; 465af0767daSMark Adams } 466e8d2b73aSMark Adams ierr = PetscLogEventEnd(events[1],0,0,0,0);CHKERRQ(ierr); 467930e68a5SMark Adams ierr = PetscLogEventBegin(events[8],0,0,0,0);CHKERRQ(ierr); 468e6118d12SMark Adams ierr = PetscLogGpuTimeBegin();CHKERRQ(ierr); 469*8fdabdddSMark Adams Kokkos::parallel_for("f, df", Kokkos::TeamPolicy<>(num_cells_batch*batch_sz, team_size, /* Kokkos::AUTO */ 16), KOKKOS_LAMBDA (const team_member team) { 470*8fdabdddSMark Adams const PetscInt b_Nelem = d_elem_offset[num_grids], b_elem_idx = team.league_rank()%b_Nelem, b_id = team.league_rank()/b_Nelem, IPf_sz_glb = d_ipf_offset[num_grids]; 4718a6f2e61SMark Adams // find my grid 472*8fdabdddSMark Adams PetscInt grid = 0; 473*8fdabdddSMark Adams while (b_elem_idx >= d_elem_offset[grid+1]) grid++; 4748a6f2e61SMark Adams { 475*8fdabdddSMark Adams const PetscInt loc_nip = d_numCells[grid]*Nq, loc_Nf = d_species_offset[grid+1] - d_species_offset[grid], loc_elem = b_elem_idx - d_elem_offset[grid]; 476*8fdabdddSMark Adams const PetscInt moffset = LAND_MOFFSET(b_id,grid,batch_sz,num_grids,d_mat_offset); 477af0767daSMark Adams const PetscScalar *coef; 478af0767daSMark Adams PetscScalar coef_buff[LANDAU_MAX_SPECIES*LANDAU_MAX_NQ]; 479*8fdabdddSMark Adams const PetscReal *invJe = &d_invJ_k( (d_ip_offset[grid] + loc_elem*Nq)*dim*dim); 480a587d139SMark // un pack IPData 4818a6f2e61SMark Adams if (!maps[grid]) { 482*8fdabdddSMark Adams coef = &d_vertex_f[b_id*IPf_sz_glb + d_ipf_offset[grid] + loc_elem*Nb*loc_Nf]; // closure and IP indexing are the same 483af0767daSMark Adams } else { 484af0767daSMark Adams coef = coef_buff; 485*8fdabdddSMark Adams for (int f = 0; f < loc_Nf; ++f) { 486*8fdabdddSMark Adams LandauIdx *const Idxs = &maps[grid]->gIdx[loc_elem][f][0]; 487af0767daSMark Adams for (int b = 0; b < Nb; ++b) { 488af0767daSMark Adams PetscInt idx = Idxs[b]; 489af0767daSMark Adams if (idx >= 0) { 4908a6f2e61SMark Adams coef_buff[f*Nb+b] = d_vertex_f[idx+moffset]; // xarray data, not IP 491af0767daSMark Adams } else { 492af0767daSMark Adams idx = -idx - 1; 493af0767daSMark Adams coef_buff[f*Nb+b] = 0; 4948a6f2e61SMark Adams for (int q = 0; q < maps[grid]->num_face; q++) { 4958a6f2e61SMark Adams PetscInt id = maps[grid]->c_maps[idx][q].gid; 4968a6f2e61SMark Adams PetscScalar scale = maps[grid]->c_maps[idx][q].scale; 4978a6f2e61SMark Adams coef_buff[f*Nb+b] += scale*d_vertex_f[id+moffset]; 498af0767daSMark Adams } 499af0767daSMark Adams } 500af0767daSMark Adams } 501af0767daSMark Adams } 502af0767daSMark Adams } 503a587d139SMark Kokkos::parallel_for(Kokkos::TeamThreadRange(team,0,Nq), [=] (int myQi) { 504*8fdabdddSMark Adams const PetscReal *const invJ = &invJe[myQi*dim*dim]; // b_elem_idx: batch element index 505a587d139SMark const PetscReal *Bq = &d_BB[myQi*Nb], *Dq = &d_DD[myQi*Nb*dim]; 506*8fdabdddSMark Adams Kokkos::parallel_for(Kokkos::ThreadVectorRange(team,0,(int)loc_Nf), [=] (int f) { 507a587d139SMark PetscInt b, e, d; 508e8d2b73aSMark Adams PetscReal refSpaceDer[LANDAU_DIM]; 509*8fdabdddSMark Adams const PetscInt idx = d_ipf_offset[grid] + f*loc_nip + loc_elem*Nq + myQi; 510*8fdabdddSMark Adams d_fdf_k(b_id,0,idx) = 0.0; 511a587d139SMark for (d = 0; d < LANDAU_DIM; ++d) refSpaceDer[d] = 0.0; 512a587d139SMark for (b = 0; b < Nb; ++b) { 513a587d139SMark const PetscInt cidx = b; 514*8fdabdddSMark Adams d_fdf_k(b_id,0,idx) += Bq[cidx]*PetscRealPart(coef[f*Nb+cidx]); 515addd1e01SJunchao Zhang for (d = 0; d < dim; ++d) refSpaceDer[d] += Dq[cidx*dim+d]*PetscRealPart(coef[f*Nb+cidx]); 516a587d139SMark } 517*8fdabdddSMark Adams //printf("\t%d.%d.%d.%d.%d) d_fdf_k(b_id,0,%d) = %g\n",b_id,grid,loc_elem,myQi,f,idx,d_fdf_k(b_id,0,idx)); 518a587d139SMark for (d = 0; d < dim; ++d) { 519*8fdabdddSMark Adams for (e = 0, d_fdf_k(b_id,d+1,idx) = 0.0; e < dim; ++e) { 520*8fdabdddSMark Adams d_fdf_k(b_id,d+1,idx) += invJ[e*dim+d]*refSpaceDer[e]; 521a587d139SMark } 522*8fdabdddSMark Adams //printf("\t\t\t%d.%d.%d.%d) d_fdf_k(b_id,%d,%d) = %g\n",b_id,grid,loc_elem,myQi,d+1,idx,d_fdf_k(b_id,d+1,idx)); 523a587d139SMark } 5248a6f2e61SMark Adams }); // f 5258a6f2e61SMark Adams }); // myQi 5268a6f2e61SMark Adams } 5278a6f2e61SMark Adams }); // global elems - fdf 5288a6f2e61SMark Adams // #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) 5298a6f2e61SMark Adams // ierr = PetscLogGpuFlops(nip_loc*(PetscLogDouble)(2*Nb*(1+dim)));CHKERRQ(ierr); 5308a6f2e61SMark Adams // #else 5318a6f2e61SMark Adams // ierr = PetscLogFlops(nip_loc*(PetscLogDouble)(2*Nb*(1+dim)));CHKERRQ(ierr); 5328a6f2e61SMark Adams // #endif 5338a6f2e61SMark Adams Kokkos::fence(); 5348a6f2e61SMark Adams ierr = PetscLogGpuTimeEnd();CHKERRQ(ierr); // is this a fence? 535930e68a5SMark Adams ierr = PetscLogEventEnd(events[8],0,0,0,0);CHKERRQ(ierr); 5368a6f2e61SMark Adams if (d_vertex_f_k) delete d_vertex_f_k; 537e6118d12SMark Adams // Jacobian 538a587d139SMark ierr = PetscLogEventBegin(events[4],0,0,0,0);CHKERRQ(ierr); 539e6118d12SMark Adams ierr = PetscLogGpuTimeBegin();CHKERRQ(ierr); 5408a6f2e61SMark Adams // #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) 541*8fdabdddSMark Adams // ierr = PetscLogGpuFlops(nip_loc*(PetscLogDouble)((nip_loc*(11*loc_Nf+ 4*dim*dim) + 6*loc_Nf*dim*dim*dim + 10*loc_Nf*dim*dim + 4*loc_Nf*dim + Nb*loc_Nf*Nb*Nq*dim*dim*5)));CHKERRQ(ierr); 5428a6f2e61SMark Adams // #else 543*8fdabdddSMark Adams // ierr = PetscLogFlops(nip_loc*(PetscLogDouble)((nip_loc*(11*loc_Nf+ 4*dim*dim) + 6*loc_Nf*dim*dim*dim + 10*loc_Nf*dim*dim + 4*loc_Nf*dim + Nb*loc_Nf*Nb*Nq*dim*dim*5)));CHKERRQ(ierr); 5448a6f2e61SMark Adams // #endif 5458a6f2e61SMark Adams const int scr_bytes = 2*(g2_scr_t::shmem_size(dim,Nf_max,Nq) + g3_scr_t::shmem_size(dim,dim,Nf_max,Nq))+fieldMats_scr_t::shmem_size(Nb,Nb)+idx_scr_t::shmem_size(Nb,nfaces)+scale_scr_t::shmem_size(Nb,nfaces); 546*8fdabdddSMark Adams ierr = PetscInfo6(plex[0], "Jacobian shared memory size: %d bytes in level %d num cells total=%D team size=%D #face=%D Nf_max=%D\n",scr_bytes,KOKKOS_SHARED_LEVEL,num_cells_batch*batch_sz,team_size,nfaces,Nf_max);CHKERRQ(ierr); 547*8fdabdddSMark Adams Kokkos::parallel_for("Jacobian", Kokkos::TeamPolicy<>(num_cells_batch*batch_sz, team_size, /* Kokkos::AUTO */ 16).set_scratch_size(KOKKOS_SHARED_LEVEL, Kokkos::PerTeam(scr_bytes)), KOKKOS_LAMBDA (const team_member team) { 548*8fdabdddSMark Adams const PetscInt b_Nelem = d_elem_offset[num_grids], b_elem_idx = team.league_rank()%b_Nelem, b_id = team.league_rank()/b_Nelem; 5498a6f2e61SMark Adams // find my grid 550*8fdabdddSMark Adams PetscInt grid = 0; 551*8fdabdddSMark Adams while (b_elem_idx >= d_elem_offset[grid+1]) grid++; 5528a6f2e61SMark Adams { 553*8fdabdddSMark Adams const PetscInt loc_Nf = d_species_offset[grid+1]-d_species_offset[grid], loc_elem = b_elem_idx - d_elem_offset[grid], totDim = loc_Nf*Nq; 554*8fdabdddSMark Adams const PetscInt moffset = LAND_MOFFSET(b_id,grid,batch_sz,num_grids,d_mat_offset); 5558a6f2e61SMark Adams const PetscInt f_off = d_species_offset[grid]; 556*8fdabdddSMark Adams g2_scr_t g2(team.team_scratch(KOKKOS_SHARED_LEVEL),dim,loc_Nf,Nq); 557*8fdabdddSMark Adams g3_scr_t g3(team.team_scratch(KOKKOS_SHARED_LEVEL),dim,dim,loc_Nf,Nq); 558*8fdabdddSMark Adams g2_scr_t gg2(team.team_scratch(KOKKOS_SHARED_LEVEL),dim,loc_Nf,Nq); 559*8fdabdddSMark Adams g3_scr_t gg3(team.team_scratch(KOKKOS_SHARED_LEVEL),dim,dim,loc_Nf,Nq); 560e0eea495SMark // get g2[] & g3[] 561e0eea495SMark Kokkos::parallel_for(Kokkos::TeamThreadRange(team,0,Nq), [=] (int myQi) { 562e0eea495SMark using Kokkos::parallel_reduce; 563*8fdabdddSMark Adams const PetscInt jpidx_glb = d_ip_offset[grid] + loc_elem * Nq + myQi; 564*8fdabdddSMark Adams const PetscReal *invJ = &d_invJ_k( jpidx_glb*dim*dim); 565*8fdabdddSMark Adams const PetscReal vj[3] = {d_x[jpidx_glb], d_y[jpidx_glb], d_z ? d_z[jpidx_glb] : 0}, wj = d_w[jpidx_glb]; 5668a6f2e61SMark Adams landau_inner_red::TensorValueType gg_temp; // reduce on part of gg2 and g33 for IP jpidx_g 567*8fdabdddSMark Adams Kokkos::parallel_reduce(Kokkos::ThreadVectorRange (team, (int)d_ip_offset[num_grids]), [=] (const int& ipidx, landau_inner_red::TensorValueType & ggg) { 568e8d2b73aSMark Adams const PetscReal wi = d_w[ipidx], x = d_x[ipidx], y = d_y[ipidx]; 56952cdd6eaSMark PetscReal temp1[3] = {0, 0, 0}, temp2 = 0; 570*8fdabdddSMark Adams PetscInt fieldA,d2,d3,f_off_r,grid_r,ipidx_g,nip_loc_r,loc_Nf_r; 571e0eea495SMark #if LANDAU_DIM==2 5728a6f2e61SMark Adams PetscReal Ud[2][2], Uk[2][2], mask = (PetscAbs(vj[0]-x) < 100*PETSC_SQRT_MACHINE_EPSILON && PetscAbs(vj[1]-y) < 100*PETSC_SQRT_MACHINE_EPSILON) ? 0. : 1.; 5738a6f2e61SMark Adams LandauTensor2D(vj, x, y, Ud, Uk, mask); 57452cdd6eaSMark #else 575*8fdabdddSMark Adams PetscReal U[3][3], z = d_z[jpidx_glb], mask = (PetscAbs(vj[0]-x) < 100*PETSC_SQRT_MACHINE_EPSILON && PetscAbs(vj[1]-y) < 100*PETSC_SQRT_MACHINE_EPSILON && PetscAbs(vj[2]-z) < 100*PETSC_SQRT_MACHINE_EPSILON) ? 0. : 1.; 5768a6f2e61SMark Adams LandauTensor3D(vj, x, y, z, U, mask); 57752cdd6eaSMark #endif 5788a6f2e61SMark Adams grid_r = 0; 5798a6f2e61SMark Adams while (ipidx >= d_ip_offset[grid_r+1]) grid_r++; // yuck search for grid 5808a6f2e61SMark Adams f_off_r = d_species_offset[grid_r]; 5818a6f2e61SMark Adams ipidx_g = ipidx - d_ip_offset[grid_r]; 5828a6f2e61SMark Adams nip_loc_r = d_numCells[grid_r]*Nq; 583*8fdabdddSMark Adams loc_Nf_r = d_species_offset[grid_r+1] - d_species_offset[grid_r]; 584*8fdabdddSMark Adams for (fieldA = 0; fieldA < loc_Nf_r; ++fieldA) { 585*8fdabdddSMark Adams const PetscInt idx = d_ipf_offset[grid_r] + fieldA*nip_loc_r + ipidx_g; 586*8fdabdddSMark Adams temp1[0] += d_fdf_k(b_id,1,idx)*d_beta[fieldA+f_off_r]*d_invMass[fieldA+f_off_r]; 587*8fdabdddSMark Adams temp1[1] += d_fdf_k(b_id,2,idx)*d_beta[fieldA+f_off_r]*d_invMass[fieldA+f_off_r]; 58852cdd6eaSMark #if LANDAU_DIM==3 589*8fdabdddSMark Adams temp1[2] += d_fdf_k(b_id,3,idx)*d_beta[fieldA+f_off_r]*d_invMass[fieldA+f_off_r]; 59052cdd6eaSMark #endif 591*8fdabdddSMark Adams temp2 += d_fdf_k(b_id,0,idx)*d_beta[fieldA+f_off_r]; 59252cdd6eaSMark } 59352cdd6eaSMark temp1[0] *= wi; 59452cdd6eaSMark temp1[1] *= wi; 59552cdd6eaSMark #if LANDAU_DIM==3 59652cdd6eaSMark temp1[2] *= wi; 59752cdd6eaSMark #endif 59852cdd6eaSMark temp2 *= wi; 59952cdd6eaSMark #if LANDAU_DIM==2 60052cdd6eaSMark for (d2 = 0; d2 < 2; d2++) { 601e0eea495SMark for (d3 = 0; d3 < 2; ++d3) { 602e0eea495SMark /* K = U * grad(f): g2=e: i,A */ 60352cdd6eaSMark ggg.gg2[d2] += Uk[d2][d3]*temp1[d3]; 604e0eea495SMark /* D = -U * (I \kron (fx)): g3=f: i,j,A */ 60552cdd6eaSMark ggg.gg3[d2][d3] += Ud[d2][d3]*temp2; 606e0eea495SMark } 607e0eea495SMark } 608e0eea495SMark #else 609e0eea495SMark for (d2 = 0; d2 < 3; ++d2) { 610e0eea495SMark for (d3 = 0; d3 < 3; ++d3) { 611e0eea495SMark /* K = U * grad(f): g2 = e: i,A */ 61252cdd6eaSMark ggg.gg2[d2] += U[d2][d3]*temp1[d3]; 613e0eea495SMark /* D = -U * (I \kron (fx)): g3 = f: i,j,A */ 61452cdd6eaSMark ggg.gg3[d2][d3] += U[d2][d3]*temp2; 615e0eea495SMark } 616e0eea495SMark } 617e0eea495SMark #endif 61852cdd6eaSMark }, Kokkos::Sum<landau_inner_red::TensorValueType>(gg_temp)); 61952cdd6eaSMark // add alpha and put in gg2/3 620*8fdabdddSMark Adams Kokkos::parallel_for(Kokkos::ThreadVectorRange (team, (int)loc_Nf), [&] (const int& fieldA) { 62152cdd6eaSMark PetscInt d2,d3; 62252cdd6eaSMark for (d2 = 0; d2 < dim; d2++) { 6238a6f2e61SMark Adams gg2(d2,fieldA,myQi) = gg_temp.gg2[d2]*d_alpha[fieldA+f_off]; 624*8fdabdddSMark Adams //printf("\t\t\t%d.%d.%d.%d) gg2(%d,%d)) = %g\n",b_id,grid,loc_elem,myQi,d2, fieldA, gg2(d2,fieldA,myQi)); 62552cdd6eaSMark for (d3 = 0; d3 < dim; d3++) { 6268a6f2e61SMark Adams gg3(d2,d3,fieldA,myQi) = -gg_temp.gg3[d2][d3]*d_alpha[fieldA+f_off]*d_invMass[fieldA+f_off]; 62752cdd6eaSMark } 62852cdd6eaSMark } 629e0eea495SMark }); 63052cdd6eaSMark /* add electric field term once per IP */ 631*8fdabdddSMark Adams Kokkos::parallel_for(Kokkos::ThreadVectorRange (team, (int)loc_Nf), [&] (const int& fieldA) { 6328a6f2e61SMark Adams gg2(dim-1,fieldA,myQi) += d_Eq_m[fieldA+f_off]; 63352cdd6eaSMark }); 634*8fdabdddSMark Adams Kokkos::parallel_for(Kokkos::ThreadVectorRange (team, (int)loc_Nf), [=] (const int& fieldA) { 635e0eea495SMark int d,d2,d3,dp; 636e0eea495SMark /* Jacobian transform - g2, g3 - per thread (2D) */ 637e0eea495SMark for (d = 0; d < dim; ++d) { 63852cdd6eaSMark g2(d,fieldA,myQi) = 0; 639e0eea495SMark for (d2 = 0; d2 < dim; ++d2) { 640*8fdabdddSMark Adams g2(d,fieldA,myQi) += invJ[d*dim+d2]*gg2(d2,fieldA,myQi); 64152cdd6eaSMark g3(d,d2,fieldA,myQi) = 0; 642e0eea495SMark for (d3 = 0; d3 < dim; ++d3) { 643e0eea495SMark for (dp = 0; dp < dim; ++dp) { 644*8fdabdddSMark Adams g3(d,d2,fieldA,myQi) += invJ[d*dim + d3]*gg3(d3,dp,fieldA,myQi)*invJ[d2*dim + dp]; 645e0eea495SMark } 646e0eea495SMark } 64752cdd6eaSMark g3(d,d2,fieldA,myQi) *= wj; 648e0eea495SMark } 64952cdd6eaSMark g2(d,fieldA,myQi) *= wj; 650e0eea495SMark } 651e0eea495SMark }); 65252cdd6eaSMark }); // Nq 653e0eea495SMark team.team_barrier(); 6541eec90e4SMark Adams { /* assemble */ 6558a6f2e61SMark Adams fieldMats_scr_t s_fieldMats(team.team_scratch(KOKKOS_SHARED_LEVEL),Nb,Nb); // Only used for GPU assembly (ie, not first pass) 6568a6f2e61SMark Adams idx_scr_t s_idx(team.team_scratch(KOKKOS_SHARED_LEVEL),Nb,nfaces); 6578a6f2e61SMark Adams scale_scr_t s_scale(team.team_scratch(KOKKOS_SHARED_LEVEL),Nb,nfaces); 658*8fdabdddSMark Adams for (PetscInt fieldA = 0; fieldA < loc_Nf; fieldA++) { 659930e68a5SMark Adams /* assemble */ 6601eec90e4SMark Adams Kokkos::parallel_for(Kokkos::TeamThreadRange(team,0,Nb), [=] (int f) { 6611eec90e4SMark Adams Kokkos::parallel_for(Kokkos::ThreadVectorRange(team,0,Nb), [=] (int g) { 6621eec90e4SMark Adams PetscScalar t = 0; 6631eec90e4SMark Adams for (int qj = 0 ; qj < Nq ; qj++) { // look at others integration points 664e0eea495SMark const PetscReal *BJq = &d_BB[qj*Nb], *DIq = &d_DD[qj*Nb*dim]; 6651eec90e4SMark Adams for (int d = 0; d < dim; ++d) { 6661eec90e4SMark Adams t += DIq[f*dim+d]*g2(d,fieldA,qj)*BJq[g]; 6671eec90e4SMark Adams for (int d2 = 0; d2 < dim; ++d2) { 6681eec90e4SMark Adams t += DIq[f*dim + d]*g3(d,d2,fieldA,qj)*DIq[g*dim + d2]; 669*8fdabdddSMark Adams //printf("\t\t%d.%d.%d) t = %g : %g %g %g\n",b_id,grid,loc_elem,t,DIq[f*dim + d],g3(d,d2,fieldA,qj),DIq[g*dim + d2]); 670e0eea495SMark } 671e0eea495SMark } 672930e68a5SMark Adams } 6738a6f2e61SMark Adams if (elem_mat_num_cells_max_grid) { // CPU assembly 6741eec90e4SMark Adams const PetscInt fOff = (fieldA*Nb + f)*totDim + fieldA*Nb + g; 675*8fdabdddSMark Adams d_elem_mats(b_id,grid,loc_elem,fOff) = t; 6761eec90e4SMark Adams } else s_fieldMats(f,g) = t; 6771eec90e4SMark Adams }); 6781eec90e4SMark Adams }); 6798a6f2e61SMark Adams if (!elem_mat_num_cells_max_grid) { // GPU assembly 680*8fdabdddSMark Adams landau_mat_assemble (d_mat, team, s_fieldMats, s_idx, s_scale, Nb, Nq, nfaces, moffset, loc_elem, fieldA, maps[grid]); 6811eec90e4SMark Adams } 6821eec90e4SMark Adams } 683a587d139SMark } 684e0eea495SMark } 685e0eea495SMark }); 686e6118d12SMark Adams ierr = PetscLogGpuTimeEnd();CHKERRQ(ierr); 6871eec90e4SMark Adams ierr = PetscLogEventEnd(events[4],0,0,0,0);CHKERRQ(ierr); 6881eec90e4SMark Adams } else { // mass 6891eec90e4SMark Adams ierr = PetscLogEventBegin(events[4],0,0,0,0);CHKERRQ(ierr); 690e6118d12SMark Adams ierr = PetscLogGpuTimeBegin();CHKERRQ(ierr); 6918a6f2e61SMark Adams // #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) 692*8fdabdddSMark Adams // ierr = PetscLogGpuFlops(nip_loc*(PetscLogDouble)(Nb*loc_Nf*Nb*Nq*4));CHKERRQ(ierr); 6938a6f2e61SMark Adams // if (ctx->deviceType == LANDAU_CPU) PetscInfo(plex[grid], "Warning: Landau selected CPU but no support for Kokkos using CPU\n"); 6948a6f2e61SMark Adams // #else 695*8fdabdddSMark Adams // ierr = PetscLogFlops(nip_loc*(PetscLogDouble)(Nb*loc_Nf*Nb*Nq*4));CHKERRQ(ierr); 6968a6f2e61SMark Adams // #endif 6978a6f2e61SMark Adams int scr_bytes = fieldMats_scr_t::shmem_size(Nq,Nq) + idx_scr_t::shmem_size(Nb,nfaces) + scale_scr_t::shmem_size(Nb,nfaces); 6988a6f2e61SMark Adams ierr = PetscInfo6(plex[0], "Mass shared memory size: %d bytes in level %d conc=%D team size=%D #face=%D Nb=%D\n",scr_bytes,KOKKOS_SHARED_LEVEL,conc,team_size,nfaces,Nb);CHKERRQ(ierr); 699*8fdabdddSMark Adams Kokkos::parallel_for("Mass", Kokkos::TeamPolicy<>(num_cells_batch*batch_sz, team_size, /* Kokkos::AUTO */ 16).set_scratch_size(KOKKOS_SHARED_LEVEL, Kokkos::PerTeam(scr_bytes)), KOKKOS_LAMBDA (const team_member team) { 700*8fdabdddSMark Adams const PetscInt b_Nelem = d_elem_offset[num_grids], b_elem_idx = team.league_rank()%b_Nelem, b_id = team.league_rank()/b_Nelem; 7011eec90e4SMark Adams fieldMats_scr_t s_fieldMats(team.team_scratch(KOKKOS_SHARED_LEVEL),Nb,Nb); 7021eec90e4SMark Adams idx_scr_t s_idx(team.team_scratch(KOKKOS_SHARED_LEVEL),Nb,nfaces); 7031eec90e4SMark Adams scale_scr_t s_scale(team.team_scratch(KOKKOS_SHARED_LEVEL),Nb,nfaces); 7048a6f2e61SMark Adams // find my grid 705*8fdabdddSMark Adams PetscInt grid = 0; 706*8fdabdddSMark Adams while (b_elem_idx >= d_elem_offset[grid+1]) grid++; 7078a6f2e61SMark Adams { 708*8fdabdddSMark Adams const PetscInt loc_Nf = d_species_offset[grid+1]-d_species_offset[grid], loc_elem = b_elem_idx - d_elem_offset[grid], totDim = loc_Nf*Nq, jpidx_0 = d_ip_offset[grid] + loc_elem * Nq; 709*8fdabdddSMark Adams const PetscInt moffset = LAND_MOFFSET(b_id,grid,batch_sz,num_grids,d_mat_offset); 710*8fdabdddSMark Adams for (int fieldA = 0; fieldA < loc_Nf; fieldA++) { 7111eec90e4SMark Adams /* assemble */ 7121eec90e4SMark Adams Kokkos::parallel_for(Kokkos::TeamThreadRange(team,0,Nb), [=] (int f) { 7131eec90e4SMark Adams Kokkos::parallel_for(Kokkos::ThreadVectorRange(team,0,Nb), [=] (int g) { 7141eec90e4SMark Adams PetscScalar t = 0; 7151eec90e4SMark Adams for (int qj = 0 ; qj < Nq ; qj++) { // look at others integration points 7161eec90e4SMark Adams const PetscReal *BJq = &d_BB[qj*Nb]; 717*8fdabdddSMark Adams const PetscInt jpidx_glb = jpidx_0 + qj; 7188a6f2e61SMark Adams if (dim==2) { 719*8fdabdddSMark Adams t += BJq[f] * d_w_k(jpidx_glb) * shift * BJq[g] * 2. * PETSC_PI; 7208a6f2e61SMark Adams } else { 721*8fdabdddSMark Adams t += BJq[f] * d_w_k(jpidx_glb) * shift * BJq[g]; 7221eec90e4SMark Adams } 7238a6f2e61SMark Adams } 7248a6f2e61SMark Adams if (elem_mat_num_cells_max_grid) { 7251eec90e4SMark Adams const PetscInt fOff = (fieldA*Nb + f)*totDim + fieldA*Nb + g; 726*8fdabdddSMark Adams d_elem_mats(b_id,grid,loc_elem,fOff) = t; 7271eec90e4SMark Adams } else s_fieldMats(f,g) = t; 728e0eea495SMark }); 729e0eea495SMark }); 7308a6f2e61SMark Adams if (!elem_mat_num_cells_max_grid) { // device assembly 731*8fdabdddSMark Adams landau_mat_assemble (d_mat, team, s_fieldMats, s_idx, s_scale, Nb, Nq, nfaces, moffset, loc_elem, fieldA, maps[grid]); 7328a6f2e61SMark Adams } // else not using GPU assembly 7331eec90e4SMark Adams } 7341eec90e4SMark Adams } 7351eec90e4SMark Adams }); 736e6118d12SMark Adams ierr = PetscLogGpuTimeEnd();CHKERRQ(ierr); 7371eec90e4SMark Adams ierr = PetscLogEventEnd(events[4],0,0,0,0);CHKERRQ(ierr); 7381eec90e4SMark Adams } 739e8d2b73aSMark Adams Kokkos::fence(); 7408a6f2e61SMark Adams if (elem_mat_num_cells_max_grid) { // CPU assembly 741*8fdabdddSMark Adams Kokkos::View<PetscScalar****, Kokkos::LayoutRight>::HostMirror h_elem_mats = Kokkos::create_mirror_view(d_elem_mats); 742e0eea495SMark Kokkos::deep_copy (h_elem_mats, d_elem_mats); 743*8fdabdddSMark Adams if (container) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_PLIB, "?????"); 744*8fdabdddSMark Adams for (PetscInt b_id = 0 ; b_id < batch_sz ; b_id++) { // OpenMP (once) 7458a6f2e61SMark Adams for (PetscInt grid=0 ; grid<num_grids ; grid++) { 7468a6f2e61SMark Adams PetscSection section, globalSection; 7478a6f2e61SMark Adams PetscInt cStart,cEnd; 748*8fdabdddSMark Adams Mat B = subJ[ LAND_PACK_IDX(b_id,grid) ]; 749*8fdabdddSMark Adams PetscInt moffset = LAND_MOFFSET(b_id,grid,batch_sz,num_grids,a_mat_offset), nloc, nzl, colbuf[1024], row; 750*8fdabdddSMark Adams const PetscInt *cols; 751*8fdabdddSMark Adams const PetscScalar *vals; 7528a6f2e61SMark Adams ierr = PetscLogEventBegin(events[5],0,0,0,0);CHKERRQ(ierr); 7538a6f2e61SMark Adams ierr = DMPlexGetHeightStratum(plex[grid],0,&cStart,&cEnd);CHKERRQ(ierr); 7548a6f2e61SMark Adams ierr = DMGetLocalSection(plex[grid], §ion);CHKERRQ(ierr); 7558a6f2e61SMark Adams ierr = DMGetGlobalSection(plex[grid], &globalSection);CHKERRQ(ierr); 756e0eea495SMark ierr = PetscLogEventEnd(events[5],0,0,0,0);CHKERRQ(ierr); 757e0eea495SMark ierr = PetscLogEventBegin(events[6],0,0,0,0);CHKERRQ(ierr); 7588a6f2e61SMark Adams for (PetscInt ej = cStart ; ej < cEnd; ++ej) { 759*8fdabdddSMark Adams const PetscScalar *elMat = &h_elem_mats(b_id,grid,ej-cStart,0); 760*8fdabdddSMark Adams ierr = DMPlexMatSetClosure(plex[grid], section, globalSection, B, ej, elMat, ADD_VALUES);CHKERRQ(ierr); 7618a6f2e61SMark Adams if (grid==0 && ej==-1) { 762*8fdabdddSMark Adams const PetscInt loc_Nf = a_species_offset[grid+1]-a_species_offset[grid], totDim = loc_Nf*Nq; 763e0eea495SMark int d,f; 7648a6f2e61SMark Adams PetscPrintf(PETSC_COMM_SELF,"Kokkos Element matrix %d/%d\n",1,(int)a_numCells[grid]); 765e0eea495SMark for (d = 0; d < totDim; ++d){ 76652cdd6eaSMark for (f = 0; f < totDim; ++f) PetscPrintf(PETSC_COMM_SELF," %12.5e", PetscRealPart(elMat[d*totDim + f])); 76752cdd6eaSMark PetscPrintf(PETSC_COMM_SELF,"\n"); 768e0eea495SMark } 769e8d2b73aSMark Adams exit(14); 770e0eea495SMark } 771e0eea495SMark } 772*8fdabdddSMark Adams //printf("\t\t\t%d.%d: a_mat_offset = %d %d. moffset=%d B=%p\n",b_id,grid,a_mat_offset[0],a_mat_offset[1],moffset, B); 773*8fdabdddSMark Adams // move nest matrix to global JacP 7748a6f2e61SMark Adams ierr = MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 7758a6f2e61SMark Adams ierr = MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 7768a6f2e61SMark Adams ierr = MatGetSize(B, &nloc, NULL);CHKERRQ(ierr); 7778a6f2e61SMark Adams for (int i=0 ; i<nloc ; i++) { 7788a6f2e61SMark Adams ierr = MatGetRow(B,i,&nzl,&cols,&vals);CHKERRQ(ierr); 7798a6f2e61SMark Adams if (nzl>1024) SETERRQ1(PetscObjectComm((PetscObject) B), PETSC_ERR_PLIB, "Row too big: %D",nzl); 7808a6f2e61SMark Adams for (int j=0; j<nzl; j++) colbuf[j] = cols[j] + moffset; 7818a6f2e61SMark Adams row = i + moffset; 7828a6f2e61SMark Adams ierr = MatSetValues(JacP,1,&row,nzl,colbuf,vals,ADD_VALUES);CHKERRQ(ierr); 7838a6f2e61SMark Adams ierr = MatRestoreRow(B,i,&nzl,&cols,&vals);CHKERRQ(ierr); 7848a6f2e61SMark Adams } 785*8fdabdddSMark Adams ierr = MatDestroy(&subJ[ LAND_PACK_IDX(b_id,grid) ]);CHKERRQ(ierr); 7868a6f2e61SMark Adams ierr = PetscLogEventEnd(events[6],0,0,0,0);CHKERRQ(ierr); 7878a6f2e61SMark Adams } // grids 788a587d139SMark } 789*8fdabdddSMark Adams } 790e0eea495SMark PetscFunctionReturn(0); 791e0eea495SMark } 792e0eea495SMark } // extern "C" 793