xref: /petsc/src/ts/utils/dmplexlandau/kokkos/landau.kokkos.cxx (revision 930e68a5a1dbab7612595fd12ba2e3af4e1d5d80)
1e0eea495SMark /*
2e0eea495SMark   Implements the Kokkos kernel
3e0eea495SMark */
4e0eea495SMark #define PETSC_SKIP_CXX_COMPLEX_FIX
5e0eea495SMark #include <petscconf.h>
6e0eea495SMark #include <petsc/private/dmpleximpl.h>   /*I   "petscdmplex.h"   I*/
7e0eea495SMark #include <petsclandau.h>
8e0eea495SMark #include <petscts.h>
9a587d139SMark #include <petscveckokkos.hpp>
10a587d139SMark 
11e0eea495SMark #include <Kokkos_Core.hpp>
12e0eea495SMark #include <cstdio>
13e0eea495SMark typedef Kokkos::TeamPolicy<>::member_type team_member;
14e0eea495SMark #define PETSC_DEVICE_FUNC_DECL KOKKOS_INLINE_FUNCTION
15e0eea495SMark #include "../land_tensors.h"
16a587d139SMark #define atomicAdd(e, f) Kokkos::atomic_fetch_add(e, f)
17a587d139SMark #include <petscaijdevice.h>
18a587d139SMark #undef atomicAdd
19e0eea495SMark 
20e0eea495SMark namespace landau_inner_red {  // namespace helps with name resolution in reduction identity
2152cdd6eaSMark   template< class ScalarType >
22e0eea495SMark   struct array_type {
2352cdd6eaSMark     ScalarType gg2[LANDAU_DIM];
2452cdd6eaSMark     ScalarType gg3[LANDAU_DIM][LANDAU_DIM];
25e0eea495SMark 
26e0eea495SMark     KOKKOS_INLINE_FUNCTION   // Default constructor - Initialize to 0's
27e0eea495SMark     array_type() {
28e0eea495SMark       for (int j = 0; j < LANDAU_DIM; j++){
2952cdd6eaSMark         gg2[j] = 0;
30e0eea495SMark         for (int k = 0; k < LANDAU_DIM; k++){
3152cdd6eaSMark           gg3[j][k] = 0;
32e0eea495SMark         }
33e0eea495SMark       }
34e0eea495SMark     }
35e0eea495SMark     KOKKOS_INLINE_FUNCTION   // Copy Constructor
36e0eea495SMark     array_type(const array_type & rhs) {
37e0eea495SMark       for (int j = 0; j < LANDAU_DIM; j++){
3852cdd6eaSMark         gg2[j] = rhs.gg2[j];
39e0eea495SMark         for (int k = 0; k < LANDAU_DIM; k++){
4052cdd6eaSMark           gg3[j][k] = rhs.gg3[j][k];
41e0eea495SMark         }
42e0eea495SMark       }
43e0eea495SMark     }
44e0eea495SMark     KOKKOS_INLINE_FUNCTION   // add operator
45e0eea495SMark     array_type& operator += (const array_type& src) {
46e0eea495SMark       for (int j = 0; j < LANDAU_DIM; j++){
4752cdd6eaSMark         gg2[j] += src.gg2[j];
48e0eea495SMark         for (int k = 0; k < LANDAU_DIM; k++){
4952cdd6eaSMark           gg3[j][k] += src.gg3[j][k];
50e0eea495SMark         }
51e0eea495SMark       }
52e0eea495SMark       return *this;
53e0eea495SMark     }
54e0eea495SMark     KOKKOS_INLINE_FUNCTION   // volatile add operator
55e0eea495SMark     void operator += (const volatile array_type& src) volatile {
56e0eea495SMark       for (int j = 0; j < LANDAU_DIM; j++){
5752cdd6eaSMark         gg2[j] += src.gg2[j];
58e0eea495SMark         for (int k = 0; k < LANDAU_DIM; k++){
5952cdd6eaSMark           gg3[j][k] += src.gg3[j][k];
60e0eea495SMark         }
61e0eea495SMark       }
62e0eea495SMark     }
63e0eea495SMark   };
6452cdd6eaSMark   typedef array_type<PetscReal> TensorValueType;  // used to simplify code below
65e0eea495SMark }
66e0eea495SMark 
67e0eea495SMark namespace Kokkos { //reduction identity must be defined in Kokkos namespace
68e0eea495SMark   template<>
6952cdd6eaSMark   struct reduction_identity< landau_inner_red::TensorValueType > {
7052cdd6eaSMark     KOKKOS_FORCEINLINE_FUNCTION static landau_inner_red::TensorValueType sum() {
7152cdd6eaSMark       return landau_inner_red::TensorValueType();
72e0eea495SMark     }
73e0eea495SMark   };
74e0eea495SMark }
75e0eea495SMark 
76e0eea495SMark extern "C"  {
77a587d139SMark   PetscErrorCode LandauKokkosCreateMatMaps(P4estVertexMaps *maps, pointInterpolationP4est (*pointMaps)[LANDAU_MAX_Q_FACE], PetscInt Nf, PetscInt Nq)
78a587d139SMark   {
79a587d139SMark     P4estVertexMaps   h_maps;  /* host container */
80a587d139SMark     const Kokkos::View<pointInterpolationP4est*[LANDAU_MAX_Q_FACE], Kokkos::LayoutRight, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> >    h_points ((pointInterpolationP4est*)pointMaps, maps->num_reduced);
81a587d139SMark     const Kokkos::View< LandauIdx*[LANDAU_MAX_SPECIES][LANDAU_MAX_NQ], Kokkos::LayoutRight, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_gidx ((LandauIdx*)maps->gIdx, maps->num_elements);
82a587d139SMark     Kokkos::View<pointInterpolationP4est*[LANDAU_MAX_Q_FACE], Kokkos::LayoutRight>   *d_points = new Kokkos::View<pointInterpolationP4est*[LANDAU_MAX_Q_FACE], Kokkos::LayoutRight>("points", maps->num_reduced);
83a587d139SMark     Kokkos::View<LandauIdx*[LANDAU_MAX_SPECIES][LANDAU_MAX_NQ], Kokkos::LayoutRight> *d_gidx = new Kokkos::View<LandauIdx*[LANDAU_MAX_SPECIES][LANDAU_MAX_NQ], Kokkos::LayoutRight>("gIdx", maps->num_elements);
84a587d139SMark 
85a587d139SMark     PetscFunctionBegin;
86a587d139SMark     Kokkos::deep_copy (*d_gidx, h_gidx);
87a587d139SMark     Kokkos::deep_copy (*d_points, h_points);
88a587d139SMark     h_maps.num_elements = maps->num_elements;
89a587d139SMark     h_maps.num_face = maps->num_face;
90a587d139SMark     h_maps.num_reduced = maps->num_reduced;
91a587d139SMark     h_maps.deviceType = maps->deviceType;
92a587d139SMark     h_maps.Nf = Nf;
93a587d139SMark     h_maps.Nq = Nq;
94a587d139SMark     h_maps.c_maps = (pointInterpolationP4est (*)[LANDAU_MAX_Q_FACE]) d_points->data();
95a587d139SMark     maps->vp1 = (void*)d_points;
96a587d139SMark     h_maps.gIdx = (LandauIdx (*)[LANDAU_MAX_SPECIES][LANDAU_MAX_NQ]) d_gidx->data();
97a587d139SMark     maps->vp2 = (void*)d_gidx;
98a587d139SMark     {
99a587d139SMark       Kokkos::View<P4estVertexMaps, Kokkos::HostSpace> h_maps_k(&h_maps);
100a587d139SMark       Kokkos::View<P4estVertexMaps>                    *d_maps_k = new Kokkos::View<P4estVertexMaps>(Kokkos::create_mirror(DeviceMemorySpace(),h_maps_k));
101a587d139SMark       Kokkos::deep_copy (*d_maps_k, h_maps_k);
102a587d139SMark       maps->data = d_maps_k->data();
103a587d139SMark       maps->vp3 = (void*)d_maps_k;
104a587d139SMark       // debug
105a587d139SMark       // PetscErrorCode    ierr;
106a587d139SMark       // PetscInt          ej,q,s;
107a587d139SMark       // ierr = PetscPrintf(PETSC_COMM_SELF,"=== c_maps size --> %D. Kokkos::View<P4estVertexMaps*>=%p maps->data=%p P4estVertexMaps *maps=%p\n",maps->num_reduced, d_maps_k, maps->data, maps);CHKERRQ(ierr);
108a587d139SMark       // for (ej = 0; ej < maps->num_reduced; ++ej) {
109a587d139SMark       //   ierr = PetscPrintf(PETSC_COMM_SELF,"\t\tconstrant %3D) ",ej);
110a587d139SMark       //   for (q = 0; q < maps->num_face; ++q) {
111a587d139SMark       //     ierr = PetscPrintf(PETSC_COMM_SELF,"\t %3D - %13.5e ; ", maps->data->c_maps[ej][q].gid, maps->data->c_maps[ej][q].scale);CHKERRQ(ierr);
112a587d139SMark       //   }
113a587d139SMark       //   ierr = PetscPrintf(PETSC_COMM_SELF,"\n");
114a587d139SMark       // }
115a587d139SMark       // ierr = PetscPrintf(PETSC_COMM_SELF,"================= gIDx \n");
116a587d139SMark       // for (ej = 0; ej < maps->num_elements; ++ej) {
117a587d139SMark       //   for (q = 0; q < Nq; ++q) {
118a587d139SMark       //     for (s = 0; s < Nf; ++s) {
119a587d139SMark       //       ierr = PetscPrintf(PETSC_COMM_SELF," %3D ", maps->data->gIdx[ej][s][q]);
120a587d139SMark       //     }
121a587d139SMark       //     ierr = PetscPrintf(PETSC_COMM_SELF," ; ");
122a587d139SMark       //   }
123a587d139SMark       //   ierr = PetscPrintf(PETSC_COMM_SELF,"\n");
124a587d139SMark       // }
125a587d139SMark     }
126a587d139SMark     PetscFunctionReturn(0);
127a587d139SMark   }
128a587d139SMark   PetscErrorCode LandauKokkosDestroyMatMaps(P4estVertexMaps *maps)
129a587d139SMark   {
130a587d139SMark     Kokkos::View<pointInterpolationP4est*[LANDAU_MAX_Q_FACE], Kokkos::LayoutRight>  *a = (Kokkos::View<pointInterpolationP4est*[LANDAU_MAX_Q_FACE], Kokkos::LayoutRight>*)maps->vp1;
131a587d139SMark     Kokkos::View<LandauIdx*[LANDAU_MAX_SPECIES][LANDAU_MAX_NQ], Kokkos::LayoutRight>*b = (Kokkos::View<LandauIdx*[LANDAU_MAX_SPECIES][LANDAU_MAX_NQ], Kokkos::LayoutRight>*)maps->vp2;
132a587d139SMark     Kokkos::View<P4estVertexMaps*>                                                  *c = (Kokkos::View<P4estVertexMaps*>*)maps->vp3;
133a587d139SMark     delete a;  delete b;  delete c;
134a587d139SMark     PetscFunctionReturn(0);
135a587d139SMark   }
136a587d139SMark 
13752cdd6eaSMark   PetscErrorCode LandauKokkosJacobian(DM plex, const PetscInt Nq, PetscReal nu_alpha[], PetscReal nu_beta[], PetscReal invMass[], PetscReal Eq_m[],
138*930e68a5SMark Adams                                       const LandauIPData *const IPData, PetscReal a_invJ[], const PetscInt num_sub_blocks, PetscReal *mass_w, PetscReal shift,
139*930e68a5SMark Adams                                       const PetscLogEvent events[], Mat JacP)
140e0eea495SMark   {
141e0eea495SMark     PetscErrorCode    ierr;
142*930e68a5SMark Adams     PetscInt          *Nbf,Nb,cStart,cEnd,Nf,dim,numCells,totDim,ipdatasz,global_elem_mat_sz,NfJac,nip;
143e0eea495SMark     PetscTabulation   *Tf;
144e0eea495SMark     PetscDS           prob;
145e0eea495SMark     PetscSection      section, globalSection;
146e0eea495SMark     PetscLogDouble    flops;
147e0eea495SMark     PetscReal         *BB,*DD;
148e0eea495SMark     LandauCtx         *ctx;
149a587d139SMark     P4estVertexMaps   *d_maps=NULL;
150a587d139SMark     PetscSplitCSRDataStructure *d_mat=NULL;
151e0eea495SMark 
152e0eea495SMark     PetscFunctionBegin;
153e0eea495SMark     ierr = DMGetApplicationContext(plex, &ctx);CHKERRQ(ierr);
154e0eea495SMark     if (!ctx) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_PLIB, "no context");
155e0eea495SMark     ierr = DMGetDimension(plex, &dim);CHKERRQ(ierr);
156e0eea495SMark     ierr = DMPlexGetHeightStratum(plex,0,&cStart,&cEnd);CHKERRQ(ierr);
157e0eea495SMark     numCells = cEnd - cStart;
158e0eea495SMark     ierr = DMGetDS(plex, &prob);CHKERRQ(ierr);
159e0eea495SMark     ierr = PetscDSGetNumFields(prob, &Nf);CHKERRQ(ierr);
160e0eea495SMark     ierr = PetscDSGetDimensions(prob, &Nbf);CHKERRQ(ierr); Nb = Nbf[0];
161e0eea495SMark     if (Nq != Nb) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Nq != Nb. %D  %D",Nq,Nb);
16252cdd6eaSMark     if (LANDAU_DIM != dim) SETERRQ2(PETSC_COMM_WORLD, PETSC_ERR_PLIB, "dim %D != LANDAU_DIM %d",dim,LANDAU_DIM);
163e0eea495SMark     ierr = PetscDSGetTotalDimension(prob, &totDim);CHKERRQ(ierr);
164e0eea495SMark     ierr = PetscDSGetTabulation(prob, &Tf);CHKERRQ(ierr);
165a587d139SMark     if (ctx->gpu_assembly) {
166a587d139SMark       PetscContainer container;
167a587d139SMark       ierr = PetscObjectQuery((PetscObject) JacP, "assembly_maps", (PetscObject *) &container);CHKERRQ(ierr);
168a587d139SMark       if (container) { // not here first call
169a587d139SMark #if defined(PETSC_HAVE_KOKKOS_KERNELS)
170a587d139SMark         P4estVertexMaps   *h_maps=NULL;
171a587d139SMark         ierr = PetscContainerGetPointer(container, (void **) &h_maps);CHKERRQ(ierr);
172a587d139SMark         ierr = PetscInfo2(JacP, "Have container maps=%p maps->data=%p\n", h_maps, h_maps ? h_maps->data : NULL);CHKERRQ(ierr);
173a587d139SMark         if (h_maps->data) {
174a587d139SMark           d_maps = h_maps->data;
175a587d139SMark         } else {
176a587d139SMark           SETERRQ(PETSC_COMM_SELF, PETSC_ERR_PLIB, "GPU assembly but no metadata in container");
177a587d139SMark         }
178a587d139SMark         // this does the setup the first time called
179a587d139SMark         ierr = MatKokkosGetDeviceMatWrite(JacP,&d_mat);CHKERRQ(ierr);
180a587d139SMark         global_elem_mat_sz = 0;
181a587d139SMark #else
182a587d139SMark         SETERRQ(PETSC_COMM_SELF, PETSC_ERR_PLIB, "GPU assembly w/o kokkos kernels -- should not be here");
183a587d139SMark #endif
184a587d139SMark       } else { // kernel output - first call assembled on device
185a587d139SMark         global_elem_mat_sz = numCells;
186a587d139SMark       }
187a587d139SMark     } else {
188a587d139SMark       global_elem_mat_sz = numCells; // no device assembly
189a587d139SMark     }
190e0eea495SMark     BB   = Tf[0]->T[0]; DD = Tf[0]->T[1];
191e0eea495SMark     ierr = DMGetLocalSection(plex, &section);CHKERRQ(ierr);
192e0eea495SMark     ierr = DMGetGlobalSection(plex, &globalSection);CHKERRQ(ierr);
193*930e68a5SMark Adams     if (mass_w) {
194*930e68a5SMark Adams       flops = (PetscLogDouble)numCells*Nq*(5*dim*dim*Nf*Nf);
195*930e68a5SMark Adams       ipdatasz = 0; NfJac = 0; nip = numCells*Nq;
196*930e68a5SMark Adams     } else {
197e0eea495SMark       flops = (PetscLogDouble)numCells*Nq*(5*dim*dim*Nf*Nf + 165);
198*930e68a5SMark Adams       ipdatasz = LandauGetIPDataSize(IPData); NfJac = Nf; nip = IPData->nip_;
199*930e68a5SMark Adams     }
20052cdd6eaSMark     ierr = PetscKokkosInitializeCheck();CHKERRQ(ierr);
201e0eea495SMark     {
202e0eea495SMark       using scr_mem_t = Kokkos::DefaultExecutionSpace::scratch_memory_space;
203e0eea495SMark       using g2_scr_t = Kokkos::View<PetscReal***, Kokkos::LayoutRight, scr_mem_t>;
204e0eea495SMark       using g3_scr_t = Kokkos::View<PetscReal****, Kokkos::LayoutRight, scr_mem_t>;
205a587d139SMark 
20652cdd6eaSMark       const int scr_bytes = 2*(g2_scr_t::shmem_size(dim,Nf,Nq) + g3_scr_t::shmem_size(dim,dim,Nf,Nq));
207a587d139SMark       int   conc, team_size;
208e0eea495SMark       ierr = PetscLogEventBegin(events[3],0,0,0,0);CHKERRQ(ierr);
209*930e68a5SMark Adams       const Kokkos::View<PetscReal*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_alpha (nu_alpha, NfJac);
210*930e68a5SMark Adams       Kokkos::View<PetscReal*, Kokkos::LayoutLeft> d_alpha ("nu_alpha", NfJac);
211*930e68a5SMark Adams       const Kokkos::View<PetscReal*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_beta (nu_beta, NfJac);
212*930e68a5SMark Adams       Kokkos::View<PetscReal*, Kokkos::LayoutLeft> d_beta ("nu_beta", NfJac);
213*930e68a5SMark Adams       const Kokkos::View<PetscReal*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_invMass (invMass,NfJac);
214*930e68a5SMark Adams       Kokkos::View<PetscReal*, Kokkos::LayoutLeft> d_invMass ("invMass", NfJac);
215*930e68a5SMark Adams       const Kokkos::View<PetscReal*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_Eq_m (Eq_m,NfJac);
216*930e68a5SMark Adams       Kokkos::View<PetscReal*, Kokkos::LayoutLeft> d_Eq_m ("Eq_m", NfJac);
217e0eea495SMark       const Kokkos::View<PetscReal*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_BB (BB,Nq*Nb);
218e0eea495SMark       Kokkos::View<PetscReal*, Kokkos::LayoutLeft> d_BB ("BB", Nq*Nb);
219e0eea495SMark       const Kokkos::View<PetscReal*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_DD (DD,Nq*Nb*dim);
220e0eea495SMark       Kokkos::View<PetscReal*, Kokkos::LayoutLeft> d_DD ("DD", Nq*Nb*dim);
221*930e68a5SMark Adams       const Kokkos::View<LandauIPReal*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_ipdata_raw (IPData->w, ipdatasz); // IPData->w==0 for mass
22252cdd6eaSMark       Kokkos::View<LandauIPReal*, Kokkos::LayoutLeft> d_ipdata_raw ("ipdata", ipdatasz);
223*930e68a5SMark Adams       const Kokkos::View<PetscReal*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_invJ (a_invJ, mass_w ? 0 : nip*dim*dim);
224*930e68a5SMark Adams       Kokkos::View<PetscReal*, Kokkos::LayoutLeft> d_invJ ("invJ", mass_w ? 0 : nip*dim*dim);
225*930e68a5SMark Adams       const Kokkos::View<PetscReal*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_mass_w (mass_w, mass_w ? nip : 0);
226*930e68a5SMark Adams       Kokkos::View<PetscReal*, Kokkos::LayoutLeft> d_mass_w ("mass_w", mass_w ? nip : 0);
227a587d139SMark       Kokkos::View<PetscScalar**, Kokkos::LayoutRight> d_elem_mats("element matrices", global_elem_mat_sz, totDim*totDim);
228*930e68a5SMark Adams       Kokkos::View<PetscScalar**, Kokkos::LayoutRight> d_f("element matrices", NfJac, nip);
229*930e68a5SMark Adams       Kokkos::View<PetscScalar***, Kokkos::LayoutRight> d_df("element matrices", dim, NfJac, nip);
230*930e68a5SMark Adams       Kokkos::deep_copy (d_mass_w, h_mass_w);
23152cdd6eaSMark       Kokkos::deep_copy (d_ipdata_raw, h_ipdata_raw);
232e0eea495SMark       Kokkos::deep_copy (d_alpha, h_alpha);
233e0eea495SMark       Kokkos::deep_copy (d_beta, h_beta);
234e0eea495SMark       Kokkos::deep_copy (d_invMass, h_invMass);
235e0eea495SMark       Kokkos::deep_copy (d_Eq_m, h_Eq_m);
236e0eea495SMark       Kokkos::deep_copy (d_BB, h_BB);
237e0eea495SMark       Kokkos::deep_copy (d_DD, h_DD);
238e0eea495SMark       Kokkos::deep_copy (d_invJ, h_invJ);
23952cdd6eaSMark 
240e0eea495SMark       ierr = PetscLogEventEnd(events[3],0,0,0,0);CHKERRQ(ierr);
241e0eea495SMark #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_VIENNACL)
242*930e68a5SMark Adams       ierr = PetscLogGpuFlops(flops*nip);CHKERRQ(ierr);
243e0eea495SMark       if (ctx->deviceType == LANDAU_CPU) PetscInfo(plex, "Warning: Landau selected CPU but no support for Kokkos using GPU\n");
244e0eea495SMark #else
245*930e68a5SMark Adams       ierr = PetscLogFlops(flops*nip);CHKERRQ(ierr);
246e0eea495SMark #endif
247e0eea495SMark #define KOKKOS_SHARED_LEVEL 1
248a587d139SMark       conc = Kokkos::DefaultExecutionSpace().concurrency(), team_size = conc > Nq ? Nq : 1;
249*930e68a5SMark Adams       // PetscInfo5(plex, "shared memory size: %d bytes in level %d. mass_w.size=%d. #threads=%D team size=%D\n",scr_bytes,KOKKOS_SHARED_LEVEL,d_mass_w.size(),num_sub_blocks,team_size);
250a587d139SMark       // get f and df
251*930e68a5SMark Adams       if (!mass_w) {
252*930e68a5SMark Adams         ierr = PetscLogEventBegin(events[8],0,0,0,0);CHKERRQ(ierr);
253*930e68a5SMark Adams         Kokkos::parallel_for("df_d_elements", Kokkos::TeamPolicy<>(numCells, team_size, num_sub_blocks), KOKKOS_LAMBDA (const team_member team) {
254a587d139SMark             const PetscInt  myelem = team.league_rank();
255a587d139SMark             // un pack IPData
256*930e68a5SMark Adams             LandauIPReal *IPData_coefs = &d_ipdata_raw[nip*(dim+1)];
257a587d139SMark             LandauIPReal *coef = &IPData_coefs[myelem*Nb*Nf];
258a587d139SMark             Kokkos::parallel_for(Kokkos::TeamThreadRange(team,0,Nq), [=] (int myQi) {
259a587d139SMark                 const PetscInt          ipidx = myQi + myelem * Nq;
260a587d139SMark                 const PetscReal *const  invJj = &d_invJ(ipidx*dim*dim);
261a587d139SMark                 const PetscReal         *Bq = &d_BB[myQi*Nb], *Dq = &d_DD[myQi*Nb*dim];
262a587d139SMark                 Kokkos::parallel_for(Kokkos::ThreadVectorRange(team,0,(int)Nf), [=] (int f) {
263a587d139SMark                     PetscInt     b, e, d;
264a587d139SMark                     PetscScalar  refSpaceDer[LANDAU_DIM];
265a587d139SMark                     d_f(f,ipidx) = 0.0;
266a587d139SMark                     for (d = 0; d < LANDAU_DIM; ++d) refSpaceDer[d] = 0.0;
267a587d139SMark                     for (b = 0; b < Nb; ++b) {
268a587d139SMark                       const PetscInt    cidx = b;
269a587d139SMark                       d_f(f,ipidx) += Bq[cidx]*coef[f*Nb+cidx];
270a587d139SMark                       for (d = 0; d < dim; ++d) refSpaceDer[d] += Dq[cidx*dim+d]*coef[f*Nb+cidx];
271a587d139SMark                     }
272a587d139SMark                     for (d = 0; d < dim; ++d) {
273a587d139SMark                       for (e = 0, d_df(d,f,ipidx) = 0.0; e < dim; ++e) {
274a587d139SMark                         d_df(d,f,ipidx) += invJj[e*dim+d]*refSpaceDer[e];
275a587d139SMark                       }
276a587d139SMark                     }
277a587d139SMark                   }); // Nf
278a587d139SMark               }); // Nq
279a587d139SMark           }); // elems
280a587d139SMark         Kokkos::fence();
281*930e68a5SMark Adams         ierr = PetscLogEventEnd(events[8],0,0,0,0);CHKERRQ(ierr);
282*930e68a5SMark Adams       }
283a587d139SMark       ierr = PetscLogEventBegin(events[4],0,0,0,0);CHKERRQ(ierr);
284*930e68a5SMark Adams       ierr = PetscLogGpuTimeBegin();CHKERRQ(ierr);
285e0eea495SMark       Kokkos::parallel_for("Landau_elements", Kokkos::TeamPolicy<>(numCells, team_size, num_sub_blocks).set_scratch_size(KOKKOS_SHARED_LEVEL, Kokkos::PerTeam(scr_bytes)), KOKKOS_LAMBDA (const team_member team) {
286e0eea495SMark           const PetscInt  myelem = team.league_rank();
287*930e68a5SMark Adams           g2_scr_t        g2(team.team_scratch(KOKKOS_SHARED_LEVEL),dim,Nf,Nq); // we don't use these for mass matrix
28852cdd6eaSMark           g3_scr_t        g3(team.team_scratch(KOKKOS_SHARED_LEVEL),dim,dim,Nf,Nq);
289*930e68a5SMark Adams           if (!d_mass_w.size()) {
29052cdd6eaSMark             g2_scr_t        gg2(team.team_scratch(KOKKOS_SHARED_LEVEL),dim,Nf,Nq);
29152cdd6eaSMark             g3_scr_t        gg3(team.team_scratch(KOKKOS_SHARED_LEVEL),dim,dim,Nf,Nq);
29252cdd6eaSMark             LandauIPData    d_IPData;
293a587d139SMark             // un pack IPData
294a587d139SMark             d_IPData.w   = &d_ipdata_raw[0];
295*930e68a5SMark Adams             d_IPData.x   = &d_ipdata_raw[1*nip];
296*930e68a5SMark Adams             d_IPData.y   = &d_ipdata_raw[2*nip];
297a587d139SMark             if (dim==2) d_IPData.z = NULL;
298*930e68a5SMark Adams             else        d_IPData.z = &d_ipdata_raw[3*nip];
299e0eea495SMark             // get g2[] & g3[]
300e0eea495SMark             Kokkos::parallel_for(Kokkos::TeamThreadRange(team,0,Nq), [=] (int myQi) {
301e0eea495SMark                 using Kokkos::parallel_reduce;
302e0eea495SMark                 const PetscInt                    jpidx = myQi + myelem * Nq;
303e0eea495SMark                 const PetscReal* const            invJj = &d_invJ(jpidx*dim*dim);
304a587d139SMark                 const PetscReal                   vj[3] = {d_IPData.x[jpidx], d_IPData.y[jpidx], d_IPData.z ? d_IPData.z[jpidx] : 0}, wj = d_IPData.w[jpidx];
30552cdd6eaSMark                 landau_inner_red::TensorValueType gg_temp; // reduce on part of gg2 and g33 for IP jpidx
306*930e68a5SMark Adams                 Kokkos::parallel_reduce(Kokkos::ThreadVectorRange (team, (int)nip), [=] (const int& ipidx, landau_inner_red::TensorValueType & ggg) {
307a587d139SMark                     const PetscReal wi = d_IPData.w[ipidx], x = d_IPData.x[ipidx], y = d_IPData.y[ipidx];
30852cdd6eaSMark                     PetscReal       temp1[3] = {0, 0, 0}, temp2 = 0;
30952cdd6eaSMark                     PetscInt        fieldA,d2,d3;
310e0eea495SMark #if LANDAU_DIM==2
311e0eea495SMark                     PetscReal Ud[2][2], Uk[2][2];
31252cdd6eaSMark                     LandauTensor2D(vj, x, y, Ud, Uk, (ipidx==jpidx) ? 0. : 1.);
31352cdd6eaSMark #else
31452cdd6eaSMark                     PetscReal U[3][3], z = d_IPData.z[ipidx];
31552cdd6eaSMark                     LandauTensor3D(vj, x, y, z, U, (ipidx==jpidx) ? 0. : 1.);
31652cdd6eaSMark #endif
317e0eea495SMark                     for (fieldA = 0; fieldA < Nf; ++fieldA) {
318a587d139SMark                       temp1[0] += d_df(0,fieldA,ipidx)*d_beta[fieldA]*d_invMass[fieldA];
319a587d139SMark                       temp1[1] += d_df(1,fieldA,ipidx)*d_beta[fieldA]*d_invMass[fieldA];
32052cdd6eaSMark #if LANDAU_DIM==3
321a587d139SMark                       temp1[2] += d_df(2,fieldA,ipidx)*d_beta[fieldA]*d_invMass[fieldA];
32252cdd6eaSMark #endif
323a587d139SMark                       temp2    += d_f(fieldA,ipidx)*d_beta[fieldA];
32452cdd6eaSMark                     }
32552cdd6eaSMark                     temp1[0] *= wi;
32652cdd6eaSMark                     temp1[1] *= wi;
32752cdd6eaSMark #if LANDAU_DIM==3
32852cdd6eaSMark                     temp1[2] *= wi;
32952cdd6eaSMark #endif
33052cdd6eaSMark                     temp2    *= wi;
33152cdd6eaSMark #if LANDAU_DIM==2
33252cdd6eaSMark                     for (d2 = 0; d2 < 2; d2++) {
333e0eea495SMark                       for (d3 = 0; d3 < 2; ++d3) {
334e0eea495SMark                         /* K = U * grad(f): g2=e: i,A */
33552cdd6eaSMark                         ggg.gg2[d2] += Uk[d2][d3]*temp1[d3];
336e0eea495SMark                         /* D = -U * (I \kron (fx)): g3=f: i,j,A */
33752cdd6eaSMark                         ggg.gg3[d2][d3] += Ud[d2][d3]*temp2;
338e0eea495SMark                       }
339e0eea495SMark                     }
340e0eea495SMark #else
341e0eea495SMark                     for (d2 = 0; d2 < 3; ++d2) {
342e0eea495SMark                       for (d3 = 0; d3 < 3; ++d3) {
343e0eea495SMark                         /* K = U * grad(f): g2 = e: i,A */
34452cdd6eaSMark                         ggg.gg2[d2] += U[d2][d3]*temp1[d3];
345e0eea495SMark                         /* D = -U * (I \kron (fx)): g3 = f: i,j,A */
34652cdd6eaSMark                         ggg.gg3[d2][d3] += U[d2][d3]*temp2;
347e0eea495SMark                       }
348e0eea495SMark                     }
349e0eea495SMark #endif
35052cdd6eaSMark                   }, Kokkos::Sum<landau_inner_red::TensorValueType>(gg_temp));
35152cdd6eaSMark                 // if (myelem==0) printf("\t:%d.%d) temp gg3=%e %e %e %e\n",myelem,myQi,gg_temp.gg3[0][0],gg_temp.gg3[1][0],gg_temp.gg3[0][1],gg_temp.gg3[1][1]);
35252cdd6eaSMark                 // add alpha and put in gg2/3
35337e8a436SMark Adams                 Kokkos::parallel_for(Kokkos::ThreadVectorRange (team, (int)Nf), [&] (const int& fieldA) {
35452cdd6eaSMark                     PetscInt d2,d3;
35552cdd6eaSMark                     for (d2 = 0; d2 < dim; d2++) {
35652cdd6eaSMark                       gg2(d2,fieldA,myQi) = gg_temp.gg2[d2]*d_alpha[fieldA];
35752cdd6eaSMark                       //if (myelem==0 && fieldA==1) printf("\t\t:%d.%d) gg2[%d]=%e (+= %e)\n",myelem,myQi,d2,gg2(d2,fieldA,myQi),gg_temp.gg2[d2]*d_alpha[fieldA]);
35852cdd6eaSMark                       //gg2[d2][myQi][fieldA] += gg_temp.gg2[d2]*d_alpha[fieldA];
35952cdd6eaSMark                       for (d3 = 0; d3 < dim; d3++) {
36052cdd6eaSMark                         //gg3[d2][d3][myQi][fieldA] -= gg_temp.gg3[d2][d3]*d_alpha[fieldA]*s_invMass[fieldA];
36152cdd6eaSMark                         gg3(d2,d3,fieldA,myQi) = -gg_temp.gg3[d2][d3]*d_alpha[fieldA]*d_invMass[fieldA];
36252cdd6eaSMark                         //if (myelem==0 && fieldA==1) printf("\t\t\t:%d.%d) gg3[%d][%d]=%e\n",myelem,myQi,d2,d3,gg3(d2,d3,fieldA,myQi));
36352cdd6eaSMark                       }
36452cdd6eaSMark                     }
365e0eea495SMark                   });
36652cdd6eaSMark                 /* add electric field term once per IP */
36752cdd6eaSMark                 Kokkos::parallel_for(Kokkos::ThreadVectorRange (team, (int)Nf), [&] (const int& fieldA) {
36852cdd6eaSMark                     //gg.gg2[fieldA][dim-1] += d_Eq_m[fieldA];
36952cdd6eaSMark                     gg2(dim-1,fieldA,myQi) += d_Eq_m[fieldA];
37052cdd6eaSMark                   });
37152cdd6eaSMark                 // Kokkos::single(Kokkos::PerThread(team), [&]() {
37237e8a436SMark Adams                 Kokkos::parallel_for(Kokkos::ThreadVectorRange (team, (int)Nf), [=] (const int& fieldA) {
373e0eea495SMark                     int d,d2,d3,dp;
374e0eea495SMark                     //printf("%d %d %d gg2[][1]=%18.10e\n",myelem,myQi,fieldA,gg.gg2[fieldA][dim-1]);
375e0eea495SMark                     /* Jacobian transform - g2, g3 - per thread (2D) */
376e0eea495SMark                     for (d = 0; d < dim; ++d) {
37752cdd6eaSMark                       g2(d,fieldA,myQi) = 0;
378e0eea495SMark                       for (d2 = 0; d2 < dim; ++d2) {
37952cdd6eaSMark                         g2(d,fieldA,myQi) += invJj[d*dim+d2]*gg2(d2,fieldA,myQi);
38052cdd6eaSMark                         //if (myelem==0 && myQi==0) printf("\t:g2[%d][%d][%d]=%e. %e %e\n",(int)myQi,(int)fieldA,(int)d,g2(fieldA,myQi,d),invJj[d*dim+d2],gg.gg2[fieldA][d2]);
38152cdd6eaSMark                         g3(d,d2,fieldA,myQi) = 0;
382e0eea495SMark                         for (d3 = 0; d3 < dim; ++d3) {
383e0eea495SMark                           for (dp = 0; dp < dim; ++dp) {
38452cdd6eaSMark                             g3(d,d2,fieldA,myQi) += invJj[d*dim + d3]*gg3(d3,dp,fieldA,myQi)*invJj[d2*dim + dp];
385e0eea495SMark                             //printf("\t%d %d %d %d %d %d %d g3=%g wj=%g g3 = %g * %g * %g\n",myelem,myQi,fieldA,d,d2,d3,dp,g3(fieldA,myQi,d,d2),wj,invJj[d*dim + d3],gg.gg3[fieldA][d3][dp],invJj[d2*dim + dp]);
386e0eea495SMark                           }
387e0eea495SMark                         }
38852cdd6eaSMark                         g3(d,d2,fieldA,myQi) *= wj;
389e0eea495SMark                       }
39052cdd6eaSMark                       g2(d,fieldA,myQi) *= wj;
391e0eea495SMark                     }
392e0eea495SMark                   });
39352cdd6eaSMark               }); // Nq
394e0eea495SMark             team.team_barrier();
395*930e68a5SMark Adams           } // Jacobian
396*930e68a5SMark Adams           /* assemble */
397e0eea495SMark           //Kokkos::single(Kokkos::PerTeam(team), [&]() {
398e0eea495SMark           Kokkos::parallel_for(Kokkos::TeamThreadRange(team,0,Nb), [=] (int blk_i) {
39937e8a436SMark Adams               Kokkos::parallel_for(Kokkos::ThreadVectorRange(team,0,(int)Nf), [=] (int fieldA) {
400e0eea495SMark                   int blk_j,qj,d,d2;
401e0eea495SMark                   const PetscInt i = fieldA*Nb + blk_i; /* Element matrix row */
402e0eea495SMark                   for (blk_j = 0; blk_j < Nb; ++blk_j) {
403e0eea495SMark                     const PetscInt j    = fieldA*Nb + blk_j; /* Element matrix column */
404e0eea495SMark                     const PetscInt fOff = i*totDim + j;
405a587d139SMark                     PetscScalar t = global_elem_mat_sz ? d_elem_mats(myelem,fOff) : 0;
406e0eea495SMark                     for (qj = 0 ; qj < Nq ; qj++) { // look at others integration points
407e0eea495SMark                       const PetscReal *BJq = &d_BB[qj*Nb], *DIq = &d_DD[qj*Nb*dim];
408*930e68a5SMark Adams                       if (!d_mass_w.size()) {
409e0eea495SMark                         for (d = 0; d < dim; ++d) {
410a587d139SMark                           t += DIq[blk_i*dim+d]*g2(d,fieldA,qj)*BJq[blk_j];
411e0eea495SMark                           for (d2 = 0; d2 < dim; ++d2) {
412a587d139SMark                             t += DIq[blk_i*dim + d]*g3(d,d2,fieldA,qj)*DIq[blk_j*dim + d2];
413e0eea495SMark                           }
414e0eea495SMark                         }
415*930e68a5SMark Adams                       } else {
416*930e68a5SMark Adams                         const PetscInt jpidx = qj + myelem * Nq;
417*930e68a5SMark Adams                         t += BJq[blk_i] * d_mass_w(jpidx)*shift * BJq[blk_j];
418*930e68a5SMark Adams                         //printf("\tmat[%d %d %d %d %d]: B=%g w=%g shift=%g B=%g\n",myelem,fOff,fieldA,qj,d,BJq[blk_i],d_mass_w(jpidx),shift,BJq[blk_j]);
419*930e68a5SMark Adams                       }
420e0eea495SMark                     }
421a587d139SMark                     if (global_elem_mat_sz) d_elem_mats(myelem,fOff) = t; // can set this because local element matrix[fOff]
422a587d139SMark                     else {
423a587d139SMark                       PetscErrorCode         ierr = 0;
424a587d139SMark                       PetscScalar            vals[LANDAU_MAX_Q*LANDAU_MAX_Q],row_scale[LANDAU_MAX_Q],col_scale[LANDAU_MAX_Q];
425a587d139SMark                       PetscInt               q,idx,nr,nc,rows0[LANDAU_MAX_Q],cols0[LANDAU_MAX_Q],rows[LANDAU_MAX_Q],cols[LANDAU_MAX_Q];
426a587d139SMark                       const LandauIdx *const Idxs = &d_maps->gIdx[myelem][fieldA][0];
427a587d139SMark                       idx = Idxs[blk_i];
428a587d139SMark                       if (idx >= 0) {
429a587d139SMark                         nr = 1;
430a587d139SMark                         rows0[0] = idx;
431a587d139SMark                         row_scale[0] = 1.;
432a587d139SMark                       } else {
433a587d139SMark                         idx = -idx - 1;
434a587d139SMark                         nr = d_maps->num_face;
435a587d139SMark                         for (q = 0; q < d_maps->num_face; q++) {
436a587d139SMark                           rows0[q]     = d_maps->c_maps[idx][q].gid;
437a587d139SMark                           row_scale[q] = d_maps->c_maps[idx][q].scale;
438a587d139SMark                         }
439a587d139SMark                       }
440a587d139SMark                       idx = Idxs[blk_j];
441a587d139SMark                       if (idx >= 0) {
442a587d139SMark                         nc = 1;
443a587d139SMark                         cols0[0] = idx;
444a587d139SMark                         col_scale[0] = 1.;
445a587d139SMark                       } else {
446a587d139SMark                         idx = -idx - 1;
447a587d139SMark                         nc = d_maps->num_face;
448a587d139SMark                         for (q = 0; q < d_maps->num_face; q++) {
449a587d139SMark                           cols0[q]     = d_maps->c_maps[idx][q].gid;
450a587d139SMark                           col_scale[q] = d_maps->c_maps[idx][q].scale;
451a587d139SMark                         }
452a587d139SMark                       }
453a587d139SMark                       for (q = 0; q < nr; q++) rows[q] = rows0[q];
454a587d139SMark                       for (q = 0; q < nc; q++) cols[q] = cols0[q];
455a587d139SMark                       for (q = 0; q < nr; q++) {
456a587d139SMark                         for (d = 0; d < nc; d++) {
457a587d139SMark                           vals[q*nc + d] = row_scale[q]*col_scale[d]*t;
458a587d139SMark                         }
459a587d139SMark                       }
460a587d139SMark                       MatSetValuesDevice(d_mat,nr,rows,nc,cols,vals,ADD_VALUES,&ierr);
461a587d139SMark                       if (ierr) return;
462a587d139SMark                     }
463e0eea495SMark                   }
464e0eea495SMark                 });
465e0eea495SMark             });
466e0eea495SMark         });
467e0eea495SMark       Kokkos::fence();
468*930e68a5SMark Adams       ierr = PetscLogGpuTimeEnd();CHKERRQ(ierr);
469e0eea495SMark       ierr = PetscLogEventEnd(events[4],0,0,0,0);CHKERRQ(ierr);
470a587d139SMark       if (global_elem_mat_sz) {
471a587d139SMark         Kokkos::View<PetscScalar**, Kokkos::LayoutRight>::HostMirror h_elem_mats = Kokkos::create_mirror_view(d_elem_mats);
472e0eea495SMark         ierr = PetscLogEventBegin(events[5],0,0,0,0);CHKERRQ(ierr);
473e0eea495SMark         Kokkos::deep_copy (h_elem_mats, d_elem_mats);
474e0eea495SMark         ierr = PetscLogEventEnd(events[5],0,0,0,0);CHKERRQ(ierr);
475e0eea495SMark         ierr = PetscLogEventBegin(events[6],0,0,0,0);CHKERRQ(ierr);
476e0eea495SMark         PetscInt ej;
477e0eea495SMark         for (ej = cStart ; ej < cEnd; ++ej) {
478e0eea495SMark           const PetscScalar *elMat = &h_elem_mats(ej-cStart,0);
479e0eea495SMark           ierr = DMPlexMatSetClosure(plex, section, globalSection, JacP, ej, elMat, ADD_VALUES);CHKERRQ(ierr);
480e0eea495SMark           if (ej==-1) {
481e0eea495SMark             int d,f;
48252cdd6eaSMark             PetscPrintf(PETSC_COMM_SELF,"Kokkos Element matrix %d/%d\n",1,(int)numCells);
483e0eea495SMark             for (d = 0; d < totDim; ++d){
48452cdd6eaSMark               for (f = 0; f < totDim; ++f) PetscPrintf(PETSC_COMM_SELF," %12.5e",  PetscRealPart(elMat[d*totDim + f]));
48552cdd6eaSMark               PetscPrintf(PETSC_COMM_SELF,"\n");
486e0eea495SMark             }
487e0eea495SMark           }
488e0eea495SMark         }
489e0eea495SMark         ierr = PetscLogEventEnd(events[6],0,0,0,0);CHKERRQ(ierr);
490e0eea495SMark       }
491a587d139SMark     }
492e0eea495SMark     PetscFunctionReturn(0);
493e0eea495SMark   }
494e0eea495SMark } // extern "C"
495