1e0eea495SMark /* 2e0eea495SMark Implements the Kokkos kernel 3e0eea495SMark */ 4e0eea495SMark #define PETSC_SKIP_CXX_COMPLEX_FIX 5e0eea495SMark #include <petscconf.h> 6e0eea495SMark #include <petsc/private/dmpleximpl.h> /*I "petscdmplex.h" I*/ 7e0eea495SMark #include <petsclandau.h> 8e0eea495SMark #include <petscts.h> 9a587d139SMark #include <petscveckokkos.hpp> 10a587d139SMark 11e0eea495SMark #include <Kokkos_Core.hpp> 12e0eea495SMark #include <cstdio> 13e0eea495SMark typedef Kokkos::TeamPolicy<>::member_type team_member; 14e0eea495SMark #define PETSC_DEVICE_FUNC_DECL KOKKOS_INLINE_FUNCTION 15e0eea495SMark #include "../land_tensors.h" 16a587d139SMark #define atomicAdd(e, f) Kokkos::atomic_fetch_add(e, f) 17a587d139SMark #include <petscaijdevice.h> 18a587d139SMark #undef atomicAdd 19e0eea495SMark 20e0eea495SMark namespace landau_inner_red { // namespace helps with name resolution in reduction identity 2152cdd6eaSMark template< class ScalarType > 22e0eea495SMark struct array_type { 2352cdd6eaSMark ScalarType gg2[LANDAU_DIM]; 2452cdd6eaSMark ScalarType gg3[LANDAU_DIM][LANDAU_DIM]; 25e0eea495SMark 26e0eea495SMark KOKKOS_INLINE_FUNCTION // Default constructor - Initialize to 0's 27e0eea495SMark array_type() { 28e0eea495SMark for (int j = 0; j < LANDAU_DIM; j++){ 2952cdd6eaSMark gg2[j] = 0; 30e0eea495SMark for (int k = 0; k < LANDAU_DIM; k++){ 3152cdd6eaSMark gg3[j][k] = 0; 32e0eea495SMark } 33e0eea495SMark } 34e0eea495SMark } 35e0eea495SMark KOKKOS_INLINE_FUNCTION // Copy Constructor 36e0eea495SMark array_type(const array_type & rhs) { 37e0eea495SMark for (int j = 0; j < LANDAU_DIM; j++){ 3852cdd6eaSMark gg2[j] = rhs.gg2[j]; 39e0eea495SMark for (int k = 0; k < LANDAU_DIM; k++){ 4052cdd6eaSMark gg3[j][k] = rhs.gg3[j][k]; 41e0eea495SMark } 42e0eea495SMark } 43e0eea495SMark } 44e0eea495SMark KOKKOS_INLINE_FUNCTION // add operator 45e0eea495SMark array_type& operator += (const array_type& src) { 46e0eea495SMark for (int j = 0; j < LANDAU_DIM; j++){ 4752cdd6eaSMark gg2[j] += src.gg2[j]; 48e0eea495SMark for (int k = 0; k < LANDAU_DIM; k++){ 4952cdd6eaSMark gg3[j][k] += src.gg3[j][k]; 50e0eea495SMark } 51e0eea495SMark } 52e0eea495SMark return *this; 53e0eea495SMark } 54e0eea495SMark KOKKOS_INLINE_FUNCTION // volatile add operator 55e0eea495SMark void operator += (const volatile array_type& src) volatile { 56e0eea495SMark for (int j = 0; j < LANDAU_DIM; j++){ 5752cdd6eaSMark gg2[j] += src.gg2[j]; 58e0eea495SMark for (int k = 0; k < LANDAU_DIM; k++){ 5952cdd6eaSMark gg3[j][k] += src.gg3[j][k]; 60e0eea495SMark } 61e0eea495SMark } 62e0eea495SMark } 63e0eea495SMark }; 6452cdd6eaSMark typedef array_type<PetscReal> TensorValueType; // used to simplify code below 65e0eea495SMark } 66e0eea495SMark 67e0eea495SMark namespace Kokkos { //reduction identity must be defined in Kokkos namespace 68e0eea495SMark template<> 6952cdd6eaSMark struct reduction_identity< landau_inner_red::TensorValueType > { 7052cdd6eaSMark KOKKOS_FORCEINLINE_FUNCTION static landau_inner_red::TensorValueType sum() { 7152cdd6eaSMark return landau_inner_red::TensorValueType(); 72e0eea495SMark } 73e0eea495SMark }; 74e0eea495SMark } 75e0eea495SMark 76e0eea495SMark extern "C" { 77a587d139SMark PetscErrorCode LandauKokkosCreateMatMaps(P4estVertexMaps *maps, pointInterpolationP4est (*pointMaps)[LANDAU_MAX_Q_FACE], PetscInt Nf, PetscInt Nq) 78a587d139SMark { 79a587d139SMark P4estVertexMaps h_maps; /* host container */ 80a587d139SMark const Kokkos::View<pointInterpolationP4est*[LANDAU_MAX_Q_FACE], Kokkos::LayoutRight, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_points ((pointInterpolationP4est*)pointMaps, maps->num_reduced); 81a587d139SMark const Kokkos::View< LandauIdx*[LANDAU_MAX_SPECIES][LANDAU_MAX_NQ], Kokkos::LayoutRight, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_gidx ((LandauIdx*)maps->gIdx, maps->num_elements); 82a587d139SMark Kokkos::View<pointInterpolationP4est*[LANDAU_MAX_Q_FACE], Kokkos::LayoutRight> *d_points = new Kokkos::View<pointInterpolationP4est*[LANDAU_MAX_Q_FACE], Kokkos::LayoutRight>("points", maps->num_reduced); 83a587d139SMark Kokkos::View<LandauIdx*[LANDAU_MAX_SPECIES][LANDAU_MAX_NQ], Kokkos::LayoutRight> *d_gidx = new Kokkos::View<LandauIdx*[LANDAU_MAX_SPECIES][LANDAU_MAX_NQ], Kokkos::LayoutRight>("gIdx", maps->num_elements); 84a587d139SMark 85a587d139SMark PetscFunctionBegin; 86a587d139SMark Kokkos::deep_copy (*d_gidx, h_gidx); 87a587d139SMark Kokkos::deep_copy (*d_points, h_points); 88a587d139SMark h_maps.num_elements = maps->num_elements; 89a587d139SMark h_maps.num_face = maps->num_face; 90a587d139SMark h_maps.num_reduced = maps->num_reduced; 91a587d139SMark h_maps.deviceType = maps->deviceType; 92a587d139SMark h_maps.Nf = Nf; 93a587d139SMark h_maps.Nq = Nq; 94a587d139SMark h_maps.c_maps = (pointInterpolationP4est (*)[LANDAU_MAX_Q_FACE]) d_points->data(); 95a587d139SMark maps->vp1 = (void*)d_points; 96a587d139SMark h_maps.gIdx = (LandauIdx (*)[LANDAU_MAX_SPECIES][LANDAU_MAX_NQ]) d_gidx->data(); 97a587d139SMark maps->vp2 = (void*)d_gidx; 98a587d139SMark { 99a587d139SMark Kokkos::View<P4estVertexMaps, Kokkos::HostSpace> h_maps_k(&h_maps); 100a587d139SMark Kokkos::View<P4estVertexMaps> *d_maps_k = new Kokkos::View<P4estVertexMaps>(Kokkos::create_mirror(DeviceMemorySpace(),h_maps_k)); 101a587d139SMark Kokkos::deep_copy (*d_maps_k, h_maps_k); 102a587d139SMark maps->data = d_maps_k->data(); 103a587d139SMark maps->vp3 = (void*)d_maps_k; 104a587d139SMark // debug 105a587d139SMark // PetscErrorCode ierr; 106a587d139SMark // PetscInt ej,q,s; 107a587d139SMark // ierr = PetscPrintf(PETSC_COMM_SELF,"=== c_maps size --> %D. Kokkos::View<P4estVertexMaps*>=%p maps->data=%p P4estVertexMaps *maps=%p\n",maps->num_reduced, d_maps_k, maps->data, maps);CHKERRQ(ierr); 108a587d139SMark // for (ej = 0; ej < maps->num_reduced; ++ej) { 109a587d139SMark // ierr = PetscPrintf(PETSC_COMM_SELF,"\t\tconstrant %3D) ",ej); 110a587d139SMark // for (q = 0; q < maps->num_face; ++q) { 111a587d139SMark // ierr = PetscPrintf(PETSC_COMM_SELF,"\t %3D - %13.5e ; ", maps->data->c_maps[ej][q].gid, maps->data->c_maps[ej][q].scale);CHKERRQ(ierr); 112a587d139SMark // } 113a587d139SMark // ierr = PetscPrintf(PETSC_COMM_SELF,"\n"); 114a587d139SMark // } 115a587d139SMark // ierr = PetscPrintf(PETSC_COMM_SELF,"================= gIDx \n"); 116a587d139SMark // for (ej = 0; ej < maps->num_elements; ++ej) { 117a587d139SMark // for (q = 0; q < Nq; ++q) { 118a587d139SMark // for (s = 0; s < Nf; ++s) { 119a587d139SMark // ierr = PetscPrintf(PETSC_COMM_SELF," %3D ", maps->data->gIdx[ej][s][q]); 120a587d139SMark // } 121a587d139SMark // ierr = PetscPrintf(PETSC_COMM_SELF," ; "); 122a587d139SMark // } 123a587d139SMark // ierr = PetscPrintf(PETSC_COMM_SELF,"\n"); 124a587d139SMark // } 125a587d139SMark } 126a587d139SMark PetscFunctionReturn(0); 127a587d139SMark } 128a587d139SMark PetscErrorCode LandauKokkosDestroyMatMaps(P4estVertexMaps *maps) 129a587d139SMark { 130a587d139SMark Kokkos::View<pointInterpolationP4est*[LANDAU_MAX_Q_FACE], Kokkos::LayoutRight> *a = (Kokkos::View<pointInterpolationP4est*[LANDAU_MAX_Q_FACE], Kokkos::LayoutRight>*)maps->vp1; 131a587d139SMark Kokkos::View<LandauIdx*[LANDAU_MAX_SPECIES][LANDAU_MAX_NQ], Kokkos::LayoutRight>*b = (Kokkos::View<LandauIdx*[LANDAU_MAX_SPECIES][LANDAU_MAX_NQ], Kokkos::LayoutRight>*)maps->vp2; 132a587d139SMark Kokkos::View<P4estVertexMaps*> *c = (Kokkos::View<P4estVertexMaps*>*)maps->vp3; 133a587d139SMark delete a; delete b; delete c; 134a587d139SMark PetscFunctionReturn(0); 135a587d139SMark } 136a587d139SMark 13752cdd6eaSMark PetscErrorCode LandauKokkosJacobian(DM plex, const PetscInt Nq, PetscReal nu_alpha[], PetscReal nu_beta[], PetscReal invMass[], PetscReal Eq_m[], 138*930e68a5SMark Adams const LandauIPData *const IPData, PetscReal a_invJ[], const PetscInt num_sub_blocks, PetscReal *mass_w, PetscReal shift, 139*930e68a5SMark Adams const PetscLogEvent events[], Mat JacP) 140e0eea495SMark { 141e0eea495SMark PetscErrorCode ierr; 142*930e68a5SMark Adams PetscInt *Nbf,Nb,cStart,cEnd,Nf,dim,numCells,totDim,ipdatasz,global_elem_mat_sz,NfJac,nip; 143e0eea495SMark PetscTabulation *Tf; 144e0eea495SMark PetscDS prob; 145e0eea495SMark PetscSection section, globalSection; 146e0eea495SMark PetscLogDouble flops; 147e0eea495SMark PetscReal *BB,*DD; 148e0eea495SMark LandauCtx *ctx; 149a587d139SMark P4estVertexMaps *d_maps=NULL; 150a587d139SMark PetscSplitCSRDataStructure *d_mat=NULL; 151e0eea495SMark 152e0eea495SMark PetscFunctionBegin; 153e0eea495SMark ierr = DMGetApplicationContext(plex, &ctx);CHKERRQ(ierr); 154e0eea495SMark if (!ctx) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_PLIB, "no context"); 155e0eea495SMark ierr = DMGetDimension(plex, &dim);CHKERRQ(ierr); 156e0eea495SMark ierr = DMPlexGetHeightStratum(plex,0,&cStart,&cEnd);CHKERRQ(ierr); 157e0eea495SMark numCells = cEnd - cStart; 158e0eea495SMark ierr = DMGetDS(plex, &prob);CHKERRQ(ierr); 159e0eea495SMark ierr = PetscDSGetNumFields(prob, &Nf);CHKERRQ(ierr); 160e0eea495SMark ierr = PetscDSGetDimensions(prob, &Nbf);CHKERRQ(ierr); Nb = Nbf[0]; 161e0eea495SMark if (Nq != Nb) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Nq != Nb. %D %D",Nq,Nb); 16252cdd6eaSMark if (LANDAU_DIM != dim) SETERRQ2(PETSC_COMM_WORLD, PETSC_ERR_PLIB, "dim %D != LANDAU_DIM %d",dim,LANDAU_DIM); 163e0eea495SMark ierr = PetscDSGetTotalDimension(prob, &totDim);CHKERRQ(ierr); 164e0eea495SMark ierr = PetscDSGetTabulation(prob, &Tf);CHKERRQ(ierr); 165a587d139SMark if (ctx->gpu_assembly) { 166a587d139SMark PetscContainer container; 167a587d139SMark ierr = PetscObjectQuery((PetscObject) JacP, "assembly_maps", (PetscObject *) &container);CHKERRQ(ierr); 168a587d139SMark if (container) { // not here first call 169a587d139SMark #if defined(PETSC_HAVE_KOKKOS_KERNELS) 170a587d139SMark P4estVertexMaps *h_maps=NULL; 171a587d139SMark ierr = PetscContainerGetPointer(container, (void **) &h_maps);CHKERRQ(ierr); 172a587d139SMark ierr = PetscInfo2(JacP, "Have container maps=%p maps->data=%p\n", h_maps, h_maps ? h_maps->data : NULL);CHKERRQ(ierr); 173a587d139SMark if (h_maps->data) { 174a587d139SMark d_maps = h_maps->data; 175a587d139SMark } else { 176a587d139SMark SETERRQ(PETSC_COMM_SELF, PETSC_ERR_PLIB, "GPU assembly but no metadata in container"); 177a587d139SMark } 178a587d139SMark // this does the setup the first time called 179a587d139SMark ierr = MatKokkosGetDeviceMatWrite(JacP,&d_mat);CHKERRQ(ierr); 180a587d139SMark global_elem_mat_sz = 0; 181a587d139SMark #else 182a587d139SMark SETERRQ(PETSC_COMM_SELF, PETSC_ERR_PLIB, "GPU assembly w/o kokkos kernels -- should not be here"); 183a587d139SMark #endif 184a587d139SMark } else { // kernel output - first call assembled on device 185a587d139SMark global_elem_mat_sz = numCells; 186a587d139SMark } 187a587d139SMark } else { 188a587d139SMark global_elem_mat_sz = numCells; // no device assembly 189a587d139SMark } 190e0eea495SMark BB = Tf[0]->T[0]; DD = Tf[0]->T[1]; 191e0eea495SMark ierr = DMGetLocalSection(plex, §ion);CHKERRQ(ierr); 192e0eea495SMark ierr = DMGetGlobalSection(plex, &globalSection);CHKERRQ(ierr); 193*930e68a5SMark Adams if (mass_w) { 194*930e68a5SMark Adams flops = (PetscLogDouble)numCells*Nq*(5*dim*dim*Nf*Nf); 195*930e68a5SMark Adams ipdatasz = 0; NfJac = 0; nip = numCells*Nq; 196*930e68a5SMark Adams } else { 197e0eea495SMark flops = (PetscLogDouble)numCells*Nq*(5*dim*dim*Nf*Nf + 165); 198*930e68a5SMark Adams ipdatasz = LandauGetIPDataSize(IPData); NfJac = Nf; nip = IPData->nip_; 199*930e68a5SMark Adams } 20052cdd6eaSMark ierr = PetscKokkosInitializeCheck();CHKERRQ(ierr); 201e0eea495SMark { 202e0eea495SMark using scr_mem_t = Kokkos::DefaultExecutionSpace::scratch_memory_space; 203e0eea495SMark using g2_scr_t = Kokkos::View<PetscReal***, Kokkos::LayoutRight, scr_mem_t>; 204e0eea495SMark using g3_scr_t = Kokkos::View<PetscReal****, Kokkos::LayoutRight, scr_mem_t>; 205a587d139SMark 20652cdd6eaSMark const int scr_bytes = 2*(g2_scr_t::shmem_size(dim,Nf,Nq) + g3_scr_t::shmem_size(dim,dim,Nf,Nq)); 207a587d139SMark int conc, team_size; 208e0eea495SMark ierr = PetscLogEventBegin(events[3],0,0,0,0);CHKERRQ(ierr); 209*930e68a5SMark Adams const Kokkos::View<PetscReal*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_alpha (nu_alpha, NfJac); 210*930e68a5SMark Adams Kokkos::View<PetscReal*, Kokkos::LayoutLeft> d_alpha ("nu_alpha", NfJac); 211*930e68a5SMark Adams const Kokkos::View<PetscReal*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_beta (nu_beta, NfJac); 212*930e68a5SMark Adams Kokkos::View<PetscReal*, Kokkos::LayoutLeft> d_beta ("nu_beta", NfJac); 213*930e68a5SMark Adams const Kokkos::View<PetscReal*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_invMass (invMass,NfJac); 214*930e68a5SMark Adams Kokkos::View<PetscReal*, Kokkos::LayoutLeft> d_invMass ("invMass", NfJac); 215*930e68a5SMark Adams const Kokkos::View<PetscReal*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_Eq_m (Eq_m,NfJac); 216*930e68a5SMark Adams Kokkos::View<PetscReal*, Kokkos::LayoutLeft> d_Eq_m ("Eq_m", NfJac); 217e0eea495SMark const Kokkos::View<PetscReal*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_BB (BB,Nq*Nb); 218e0eea495SMark Kokkos::View<PetscReal*, Kokkos::LayoutLeft> d_BB ("BB", Nq*Nb); 219e0eea495SMark const Kokkos::View<PetscReal*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_DD (DD,Nq*Nb*dim); 220e0eea495SMark Kokkos::View<PetscReal*, Kokkos::LayoutLeft> d_DD ("DD", Nq*Nb*dim); 221*930e68a5SMark Adams const Kokkos::View<LandauIPReal*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_ipdata_raw (IPData->w, ipdatasz); // IPData->w==0 for mass 22252cdd6eaSMark Kokkos::View<LandauIPReal*, Kokkos::LayoutLeft> d_ipdata_raw ("ipdata", ipdatasz); 223*930e68a5SMark Adams const Kokkos::View<PetscReal*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_invJ (a_invJ, mass_w ? 0 : nip*dim*dim); 224*930e68a5SMark Adams Kokkos::View<PetscReal*, Kokkos::LayoutLeft> d_invJ ("invJ", mass_w ? 0 : nip*dim*dim); 225*930e68a5SMark Adams const Kokkos::View<PetscReal*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_mass_w (mass_w, mass_w ? nip : 0); 226*930e68a5SMark Adams Kokkos::View<PetscReal*, Kokkos::LayoutLeft> d_mass_w ("mass_w", mass_w ? nip : 0); 227a587d139SMark Kokkos::View<PetscScalar**, Kokkos::LayoutRight> d_elem_mats("element matrices", global_elem_mat_sz, totDim*totDim); 228*930e68a5SMark Adams Kokkos::View<PetscScalar**, Kokkos::LayoutRight> d_f("element matrices", NfJac, nip); 229*930e68a5SMark Adams Kokkos::View<PetscScalar***, Kokkos::LayoutRight> d_df("element matrices", dim, NfJac, nip); 230*930e68a5SMark Adams Kokkos::deep_copy (d_mass_w, h_mass_w); 23152cdd6eaSMark Kokkos::deep_copy (d_ipdata_raw, h_ipdata_raw); 232e0eea495SMark Kokkos::deep_copy (d_alpha, h_alpha); 233e0eea495SMark Kokkos::deep_copy (d_beta, h_beta); 234e0eea495SMark Kokkos::deep_copy (d_invMass, h_invMass); 235e0eea495SMark Kokkos::deep_copy (d_Eq_m, h_Eq_m); 236e0eea495SMark Kokkos::deep_copy (d_BB, h_BB); 237e0eea495SMark Kokkos::deep_copy (d_DD, h_DD); 238e0eea495SMark Kokkos::deep_copy (d_invJ, h_invJ); 23952cdd6eaSMark 240e0eea495SMark ierr = PetscLogEventEnd(events[3],0,0,0,0);CHKERRQ(ierr); 241e0eea495SMark #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_VIENNACL) 242*930e68a5SMark Adams ierr = PetscLogGpuFlops(flops*nip);CHKERRQ(ierr); 243e0eea495SMark if (ctx->deviceType == LANDAU_CPU) PetscInfo(plex, "Warning: Landau selected CPU but no support for Kokkos using GPU\n"); 244e0eea495SMark #else 245*930e68a5SMark Adams ierr = PetscLogFlops(flops*nip);CHKERRQ(ierr); 246e0eea495SMark #endif 247e0eea495SMark #define KOKKOS_SHARED_LEVEL 1 248a587d139SMark conc = Kokkos::DefaultExecutionSpace().concurrency(), team_size = conc > Nq ? Nq : 1; 249*930e68a5SMark Adams // PetscInfo5(plex, "shared memory size: %d bytes in level %d. mass_w.size=%d. #threads=%D team size=%D\n",scr_bytes,KOKKOS_SHARED_LEVEL,d_mass_w.size(),num_sub_blocks,team_size); 250a587d139SMark // get f and df 251*930e68a5SMark Adams if (!mass_w) { 252*930e68a5SMark Adams ierr = PetscLogEventBegin(events[8],0,0,0,0);CHKERRQ(ierr); 253*930e68a5SMark Adams Kokkos::parallel_for("df_d_elements", Kokkos::TeamPolicy<>(numCells, team_size, num_sub_blocks), KOKKOS_LAMBDA (const team_member team) { 254a587d139SMark const PetscInt myelem = team.league_rank(); 255a587d139SMark // un pack IPData 256*930e68a5SMark Adams LandauIPReal *IPData_coefs = &d_ipdata_raw[nip*(dim+1)]; 257a587d139SMark LandauIPReal *coef = &IPData_coefs[myelem*Nb*Nf]; 258a587d139SMark Kokkos::parallel_for(Kokkos::TeamThreadRange(team,0,Nq), [=] (int myQi) { 259a587d139SMark const PetscInt ipidx = myQi + myelem * Nq; 260a587d139SMark const PetscReal *const invJj = &d_invJ(ipidx*dim*dim); 261a587d139SMark const PetscReal *Bq = &d_BB[myQi*Nb], *Dq = &d_DD[myQi*Nb*dim]; 262a587d139SMark Kokkos::parallel_for(Kokkos::ThreadVectorRange(team,0,(int)Nf), [=] (int f) { 263a587d139SMark PetscInt b, e, d; 264a587d139SMark PetscScalar refSpaceDer[LANDAU_DIM]; 265a587d139SMark d_f(f,ipidx) = 0.0; 266a587d139SMark for (d = 0; d < LANDAU_DIM; ++d) refSpaceDer[d] = 0.0; 267a587d139SMark for (b = 0; b < Nb; ++b) { 268a587d139SMark const PetscInt cidx = b; 269a587d139SMark d_f(f,ipidx) += Bq[cidx]*coef[f*Nb+cidx]; 270a587d139SMark for (d = 0; d < dim; ++d) refSpaceDer[d] += Dq[cidx*dim+d]*coef[f*Nb+cidx]; 271a587d139SMark } 272a587d139SMark for (d = 0; d < dim; ++d) { 273a587d139SMark for (e = 0, d_df(d,f,ipidx) = 0.0; e < dim; ++e) { 274a587d139SMark d_df(d,f,ipidx) += invJj[e*dim+d]*refSpaceDer[e]; 275a587d139SMark } 276a587d139SMark } 277a587d139SMark }); // Nf 278a587d139SMark }); // Nq 279a587d139SMark }); // elems 280a587d139SMark Kokkos::fence(); 281*930e68a5SMark Adams ierr = PetscLogEventEnd(events[8],0,0,0,0);CHKERRQ(ierr); 282*930e68a5SMark Adams } 283a587d139SMark ierr = PetscLogEventBegin(events[4],0,0,0,0);CHKERRQ(ierr); 284*930e68a5SMark Adams ierr = PetscLogGpuTimeBegin();CHKERRQ(ierr); 285e0eea495SMark Kokkos::parallel_for("Landau_elements", Kokkos::TeamPolicy<>(numCells, team_size, num_sub_blocks).set_scratch_size(KOKKOS_SHARED_LEVEL, Kokkos::PerTeam(scr_bytes)), KOKKOS_LAMBDA (const team_member team) { 286e0eea495SMark const PetscInt myelem = team.league_rank(); 287*930e68a5SMark Adams g2_scr_t g2(team.team_scratch(KOKKOS_SHARED_LEVEL),dim,Nf,Nq); // we don't use these for mass matrix 28852cdd6eaSMark g3_scr_t g3(team.team_scratch(KOKKOS_SHARED_LEVEL),dim,dim,Nf,Nq); 289*930e68a5SMark Adams if (!d_mass_w.size()) { 29052cdd6eaSMark g2_scr_t gg2(team.team_scratch(KOKKOS_SHARED_LEVEL),dim,Nf,Nq); 29152cdd6eaSMark g3_scr_t gg3(team.team_scratch(KOKKOS_SHARED_LEVEL),dim,dim,Nf,Nq); 29252cdd6eaSMark LandauIPData d_IPData; 293a587d139SMark // un pack IPData 294a587d139SMark d_IPData.w = &d_ipdata_raw[0]; 295*930e68a5SMark Adams d_IPData.x = &d_ipdata_raw[1*nip]; 296*930e68a5SMark Adams d_IPData.y = &d_ipdata_raw[2*nip]; 297a587d139SMark if (dim==2) d_IPData.z = NULL; 298*930e68a5SMark Adams else d_IPData.z = &d_ipdata_raw[3*nip]; 299e0eea495SMark // get g2[] & g3[] 300e0eea495SMark Kokkos::parallel_for(Kokkos::TeamThreadRange(team,0,Nq), [=] (int myQi) { 301e0eea495SMark using Kokkos::parallel_reduce; 302e0eea495SMark const PetscInt jpidx = myQi + myelem * Nq; 303e0eea495SMark const PetscReal* const invJj = &d_invJ(jpidx*dim*dim); 304a587d139SMark const PetscReal vj[3] = {d_IPData.x[jpidx], d_IPData.y[jpidx], d_IPData.z ? d_IPData.z[jpidx] : 0}, wj = d_IPData.w[jpidx]; 30552cdd6eaSMark landau_inner_red::TensorValueType gg_temp; // reduce on part of gg2 and g33 for IP jpidx 306*930e68a5SMark Adams Kokkos::parallel_reduce(Kokkos::ThreadVectorRange (team, (int)nip), [=] (const int& ipidx, landau_inner_red::TensorValueType & ggg) { 307a587d139SMark const PetscReal wi = d_IPData.w[ipidx], x = d_IPData.x[ipidx], y = d_IPData.y[ipidx]; 30852cdd6eaSMark PetscReal temp1[3] = {0, 0, 0}, temp2 = 0; 30952cdd6eaSMark PetscInt fieldA,d2,d3; 310e0eea495SMark #if LANDAU_DIM==2 311e0eea495SMark PetscReal Ud[2][2], Uk[2][2]; 31252cdd6eaSMark LandauTensor2D(vj, x, y, Ud, Uk, (ipidx==jpidx) ? 0. : 1.); 31352cdd6eaSMark #else 31452cdd6eaSMark PetscReal U[3][3], z = d_IPData.z[ipidx]; 31552cdd6eaSMark LandauTensor3D(vj, x, y, z, U, (ipidx==jpidx) ? 0. : 1.); 31652cdd6eaSMark #endif 317e0eea495SMark for (fieldA = 0; fieldA < Nf; ++fieldA) { 318a587d139SMark temp1[0] += d_df(0,fieldA,ipidx)*d_beta[fieldA]*d_invMass[fieldA]; 319a587d139SMark temp1[1] += d_df(1,fieldA,ipidx)*d_beta[fieldA]*d_invMass[fieldA]; 32052cdd6eaSMark #if LANDAU_DIM==3 321a587d139SMark temp1[2] += d_df(2,fieldA,ipidx)*d_beta[fieldA]*d_invMass[fieldA]; 32252cdd6eaSMark #endif 323a587d139SMark temp2 += d_f(fieldA,ipidx)*d_beta[fieldA]; 32452cdd6eaSMark } 32552cdd6eaSMark temp1[0] *= wi; 32652cdd6eaSMark temp1[1] *= wi; 32752cdd6eaSMark #if LANDAU_DIM==3 32852cdd6eaSMark temp1[2] *= wi; 32952cdd6eaSMark #endif 33052cdd6eaSMark temp2 *= wi; 33152cdd6eaSMark #if LANDAU_DIM==2 33252cdd6eaSMark for (d2 = 0; d2 < 2; d2++) { 333e0eea495SMark for (d3 = 0; d3 < 2; ++d3) { 334e0eea495SMark /* K = U * grad(f): g2=e: i,A */ 33552cdd6eaSMark ggg.gg2[d2] += Uk[d2][d3]*temp1[d3]; 336e0eea495SMark /* D = -U * (I \kron (fx)): g3=f: i,j,A */ 33752cdd6eaSMark ggg.gg3[d2][d3] += Ud[d2][d3]*temp2; 338e0eea495SMark } 339e0eea495SMark } 340e0eea495SMark #else 341e0eea495SMark for (d2 = 0; d2 < 3; ++d2) { 342e0eea495SMark for (d3 = 0; d3 < 3; ++d3) { 343e0eea495SMark /* K = U * grad(f): g2 = e: i,A */ 34452cdd6eaSMark ggg.gg2[d2] += U[d2][d3]*temp1[d3]; 345e0eea495SMark /* D = -U * (I \kron (fx)): g3 = f: i,j,A */ 34652cdd6eaSMark ggg.gg3[d2][d3] += U[d2][d3]*temp2; 347e0eea495SMark } 348e0eea495SMark } 349e0eea495SMark #endif 35052cdd6eaSMark }, Kokkos::Sum<landau_inner_red::TensorValueType>(gg_temp)); 35152cdd6eaSMark // if (myelem==0) printf("\t:%d.%d) temp gg3=%e %e %e %e\n",myelem,myQi,gg_temp.gg3[0][0],gg_temp.gg3[1][0],gg_temp.gg3[0][1],gg_temp.gg3[1][1]); 35252cdd6eaSMark // add alpha and put in gg2/3 35337e8a436SMark Adams Kokkos::parallel_for(Kokkos::ThreadVectorRange (team, (int)Nf), [&] (const int& fieldA) { 35452cdd6eaSMark PetscInt d2,d3; 35552cdd6eaSMark for (d2 = 0; d2 < dim; d2++) { 35652cdd6eaSMark gg2(d2,fieldA,myQi) = gg_temp.gg2[d2]*d_alpha[fieldA]; 35752cdd6eaSMark //if (myelem==0 && fieldA==1) printf("\t\t:%d.%d) gg2[%d]=%e (+= %e)\n",myelem,myQi,d2,gg2(d2,fieldA,myQi),gg_temp.gg2[d2]*d_alpha[fieldA]); 35852cdd6eaSMark //gg2[d2][myQi][fieldA] += gg_temp.gg2[d2]*d_alpha[fieldA]; 35952cdd6eaSMark for (d3 = 0; d3 < dim; d3++) { 36052cdd6eaSMark //gg3[d2][d3][myQi][fieldA] -= gg_temp.gg3[d2][d3]*d_alpha[fieldA]*s_invMass[fieldA]; 36152cdd6eaSMark gg3(d2,d3,fieldA,myQi) = -gg_temp.gg3[d2][d3]*d_alpha[fieldA]*d_invMass[fieldA]; 36252cdd6eaSMark //if (myelem==0 && fieldA==1) printf("\t\t\t:%d.%d) gg3[%d][%d]=%e\n",myelem,myQi,d2,d3,gg3(d2,d3,fieldA,myQi)); 36352cdd6eaSMark } 36452cdd6eaSMark } 365e0eea495SMark }); 36652cdd6eaSMark /* add electric field term once per IP */ 36752cdd6eaSMark Kokkos::parallel_for(Kokkos::ThreadVectorRange (team, (int)Nf), [&] (const int& fieldA) { 36852cdd6eaSMark //gg.gg2[fieldA][dim-1] += d_Eq_m[fieldA]; 36952cdd6eaSMark gg2(dim-1,fieldA,myQi) += d_Eq_m[fieldA]; 37052cdd6eaSMark }); 37152cdd6eaSMark // Kokkos::single(Kokkos::PerThread(team), [&]() { 37237e8a436SMark Adams Kokkos::parallel_for(Kokkos::ThreadVectorRange (team, (int)Nf), [=] (const int& fieldA) { 373e0eea495SMark int d,d2,d3,dp; 374e0eea495SMark //printf("%d %d %d gg2[][1]=%18.10e\n",myelem,myQi,fieldA,gg.gg2[fieldA][dim-1]); 375e0eea495SMark /* Jacobian transform - g2, g3 - per thread (2D) */ 376e0eea495SMark for (d = 0; d < dim; ++d) { 37752cdd6eaSMark g2(d,fieldA,myQi) = 0; 378e0eea495SMark for (d2 = 0; d2 < dim; ++d2) { 37952cdd6eaSMark g2(d,fieldA,myQi) += invJj[d*dim+d2]*gg2(d2,fieldA,myQi); 38052cdd6eaSMark //if (myelem==0 && myQi==0) printf("\t:g2[%d][%d][%d]=%e. %e %e\n",(int)myQi,(int)fieldA,(int)d,g2(fieldA,myQi,d),invJj[d*dim+d2],gg.gg2[fieldA][d2]); 38152cdd6eaSMark g3(d,d2,fieldA,myQi) = 0; 382e0eea495SMark for (d3 = 0; d3 < dim; ++d3) { 383e0eea495SMark for (dp = 0; dp < dim; ++dp) { 38452cdd6eaSMark g3(d,d2,fieldA,myQi) += invJj[d*dim + d3]*gg3(d3,dp,fieldA,myQi)*invJj[d2*dim + dp]; 385e0eea495SMark //printf("\t%d %d %d %d %d %d %d g3=%g wj=%g g3 = %g * %g * %g\n",myelem,myQi,fieldA,d,d2,d3,dp,g3(fieldA,myQi,d,d2),wj,invJj[d*dim + d3],gg.gg3[fieldA][d3][dp],invJj[d2*dim + dp]); 386e0eea495SMark } 387e0eea495SMark } 38852cdd6eaSMark g3(d,d2,fieldA,myQi) *= wj; 389e0eea495SMark } 39052cdd6eaSMark g2(d,fieldA,myQi) *= wj; 391e0eea495SMark } 392e0eea495SMark }); 39352cdd6eaSMark }); // Nq 394e0eea495SMark team.team_barrier(); 395*930e68a5SMark Adams } // Jacobian 396*930e68a5SMark Adams /* assemble */ 397e0eea495SMark //Kokkos::single(Kokkos::PerTeam(team), [&]() { 398e0eea495SMark Kokkos::parallel_for(Kokkos::TeamThreadRange(team,0,Nb), [=] (int blk_i) { 39937e8a436SMark Adams Kokkos::parallel_for(Kokkos::ThreadVectorRange(team,0,(int)Nf), [=] (int fieldA) { 400e0eea495SMark int blk_j,qj,d,d2; 401e0eea495SMark const PetscInt i = fieldA*Nb + blk_i; /* Element matrix row */ 402e0eea495SMark for (blk_j = 0; blk_j < Nb; ++blk_j) { 403e0eea495SMark const PetscInt j = fieldA*Nb + blk_j; /* Element matrix column */ 404e0eea495SMark const PetscInt fOff = i*totDim + j; 405a587d139SMark PetscScalar t = global_elem_mat_sz ? d_elem_mats(myelem,fOff) : 0; 406e0eea495SMark for (qj = 0 ; qj < Nq ; qj++) { // look at others integration points 407e0eea495SMark const PetscReal *BJq = &d_BB[qj*Nb], *DIq = &d_DD[qj*Nb*dim]; 408*930e68a5SMark Adams if (!d_mass_w.size()) { 409e0eea495SMark for (d = 0; d < dim; ++d) { 410a587d139SMark t += DIq[blk_i*dim+d]*g2(d,fieldA,qj)*BJq[blk_j]; 411e0eea495SMark for (d2 = 0; d2 < dim; ++d2) { 412a587d139SMark t += DIq[blk_i*dim + d]*g3(d,d2,fieldA,qj)*DIq[blk_j*dim + d2]; 413e0eea495SMark } 414e0eea495SMark } 415*930e68a5SMark Adams } else { 416*930e68a5SMark Adams const PetscInt jpidx = qj + myelem * Nq; 417*930e68a5SMark Adams t += BJq[blk_i] * d_mass_w(jpidx)*shift * BJq[blk_j]; 418*930e68a5SMark Adams //printf("\tmat[%d %d %d %d %d]: B=%g w=%g shift=%g B=%g\n",myelem,fOff,fieldA,qj,d,BJq[blk_i],d_mass_w(jpidx),shift,BJq[blk_j]); 419*930e68a5SMark Adams } 420e0eea495SMark } 421a587d139SMark if (global_elem_mat_sz) d_elem_mats(myelem,fOff) = t; // can set this because local element matrix[fOff] 422a587d139SMark else { 423a587d139SMark PetscErrorCode ierr = 0; 424a587d139SMark PetscScalar vals[LANDAU_MAX_Q*LANDAU_MAX_Q],row_scale[LANDAU_MAX_Q],col_scale[LANDAU_MAX_Q]; 425a587d139SMark PetscInt q,idx,nr,nc,rows0[LANDAU_MAX_Q],cols0[LANDAU_MAX_Q],rows[LANDAU_MAX_Q],cols[LANDAU_MAX_Q]; 426a587d139SMark const LandauIdx *const Idxs = &d_maps->gIdx[myelem][fieldA][0]; 427a587d139SMark idx = Idxs[blk_i]; 428a587d139SMark if (idx >= 0) { 429a587d139SMark nr = 1; 430a587d139SMark rows0[0] = idx; 431a587d139SMark row_scale[0] = 1.; 432a587d139SMark } else { 433a587d139SMark idx = -idx - 1; 434a587d139SMark nr = d_maps->num_face; 435a587d139SMark for (q = 0; q < d_maps->num_face; q++) { 436a587d139SMark rows0[q] = d_maps->c_maps[idx][q].gid; 437a587d139SMark row_scale[q] = d_maps->c_maps[idx][q].scale; 438a587d139SMark } 439a587d139SMark } 440a587d139SMark idx = Idxs[blk_j]; 441a587d139SMark if (idx >= 0) { 442a587d139SMark nc = 1; 443a587d139SMark cols0[0] = idx; 444a587d139SMark col_scale[0] = 1.; 445a587d139SMark } else { 446a587d139SMark idx = -idx - 1; 447a587d139SMark nc = d_maps->num_face; 448a587d139SMark for (q = 0; q < d_maps->num_face; q++) { 449a587d139SMark cols0[q] = d_maps->c_maps[idx][q].gid; 450a587d139SMark col_scale[q] = d_maps->c_maps[idx][q].scale; 451a587d139SMark } 452a587d139SMark } 453a587d139SMark for (q = 0; q < nr; q++) rows[q] = rows0[q]; 454a587d139SMark for (q = 0; q < nc; q++) cols[q] = cols0[q]; 455a587d139SMark for (q = 0; q < nr; q++) { 456a587d139SMark for (d = 0; d < nc; d++) { 457a587d139SMark vals[q*nc + d] = row_scale[q]*col_scale[d]*t; 458a587d139SMark } 459a587d139SMark } 460a587d139SMark MatSetValuesDevice(d_mat,nr,rows,nc,cols,vals,ADD_VALUES,&ierr); 461a587d139SMark if (ierr) return; 462a587d139SMark } 463e0eea495SMark } 464e0eea495SMark }); 465e0eea495SMark }); 466e0eea495SMark }); 467e0eea495SMark Kokkos::fence(); 468*930e68a5SMark Adams ierr = PetscLogGpuTimeEnd();CHKERRQ(ierr); 469e0eea495SMark ierr = PetscLogEventEnd(events[4],0,0,0,0);CHKERRQ(ierr); 470a587d139SMark if (global_elem_mat_sz) { 471a587d139SMark Kokkos::View<PetscScalar**, Kokkos::LayoutRight>::HostMirror h_elem_mats = Kokkos::create_mirror_view(d_elem_mats); 472e0eea495SMark ierr = PetscLogEventBegin(events[5],0,0,0,0);CHKERRQ(ierr); 473e0eea495SMark Kokkos::deep_copy (h_elem_mats, d_elem_mats); 474e0eea495SMark ierr = PetscLogEventEnd(events[5],0,0,0,0);CHKERRQ(ierr); 475e0eea495SMark ierr = PetscLogEventBegin(events[6],0,0,0,0);CHKERRQ(ierr); 476e0eea495SMark PetscInt ej; 477e0eea495SMark for (ej = cStart ; ej < cEnd; ++ej) { 478e0eea495SMark const PetscScalar *elMat = &h_elem_mats(ej-cStart,0); 479e0eea495SMark ierr = DMPlexMatSetClosure(plex, section, globalSection, JacP, ej, elMat, ADD_VALUES);CHKERRQ(ierr); 480e0eea495SMark if (ej==-1) { 481e0eea495SMark int d,f; 48252cdd6eaSMark PetscPrintf(PETSC_COMM_SELF,"Kokkos Element matrix %d/%d\n",1,(int)numCells); 483e0eea495SMark for (d = 0; d < totDim; ++d){ 48452cdd6eaSMark for (f = 0; f < totDim; ++f) PetscPrintf(PETSC_COMM_SELF," %12.5e", PetscRealPart(elMat[d*totDim + f])); 48552cdd6eaSMark PetscPrintf(PETSC_COMM_SELF,"\n"); 486e0eea495SMark } 487e0eea495SMark } 488e0eea495SMark } 489e0eea495SMark ierr = PetscLogEventEnd(events[6],0,0,0,0);CHKERRQ(ierr); 490e0eea495SMark } 491a587d139SMark } 492e0eea495SMark PetscFunctionReturn(0); 493e0eea495SMark } 494e0eea495SMark } // extern "C" 495