xref: /petsc/src/ts/utils/dmplexlandau/kokkos/landau.kokkos.cxx (revision a16fd2c93c02146fccd68469496ac02ca99b9ebe)
1e0eea495SMark /*
2e0eea495SMark   Implements the Kokkos kernel
3e0eea495SMark */
4e0eea495SMark #include <petscconf.h>
511d22bbfSJunchao Zhang #include <petscvec_kokkos.hpp>
6e0eea495SMark #include <petsc/private/dmpleximpl.h> /*I   "petscdmplex.h"   I*/
7*a16fd2c9SJacob Faibussowitsch #include <petsc/private/deviceimpl.h>
8e0eea495SMark #include <petsclandau.h>
9e0eea495SMark #include <petscts.h>
10a587d139SMark 
11e0eea495SMark #include <Kokkos_Core.hpp>
12e0eea495SMark #include <cstdio>
13e0eea495SMark typedef Kokkos::TeamPolicy<>::member_type team_member;
14e0eea495SMark #include "../land_tensors.h"
15a587d139SMark #include <petscaijdevice.h>
16e0eea495SMark 
17e0eea495SMark namespace landau_inner_red { // namespace helps with name resolution in reduction identity
1852cdd6eaSMark template <class ScalarType>
19e0eea495SMark struct array_type {
2052cdd6eaSMark   ScalarType gg2[LANDAU_DIM];
2152cdd6eaSMark   ScalarType gg3[LANDAU_DIM][LANDAU_DIM];
22e0eea495SMark 
23e0eea495SMark   KOKKOS_INLINE_FUNCTION // Default constructor - Initialize to 0's
24e0eea495SMark   array_type() {
25e0eea495SMark     for (int j = 0; j < LANDAU_DIM; j++) {
2652cdd6eaSMark       gg2[j] = 0;
27ad540459SPierre Jolivet       for (int k = 0; k < LANDAU_DIM; k++) gg3[j][k] = 0;
28e0eea495SMark     }
29e0eea495SMark   }
30e0eea495SMark   KOKKOS_INLINE_FUNCTION // Copy Constructor
31e0eea495SMark   array_type(const array_type &rhs) {
32e0eea495SMark     for (int j = 0; j < LANDAU_DIM; j++) {
3352cdd6eaSMark       gg2[j] = rhs.gg2[j];
34ad540459SPierre Jolivet       for (int k = 0; k < LANDAU_DIM; k++) gg3[j][k] = rhs.gg3[j][k];
35e0eea495SMark     }
36e0eea495SMark   }
37e0eea495SMark   KOKKOS_INLINE_FUNCTION // add operator
389371c9d4SSatish Balay     array_type &
399371c9d4SSatish Balay     operator+=(const array_type &src) {
40e0eea495SMark     for (int j = 0; j < LANDAU_DIM; j++) {
4152cdd6eaSMark       gg2[j] += src.gg2[j];
42ad540459SPierre Jolivet       for (int k = 0; k < LANDAU_DIM; k++) gg3[j][k] += src.gg3[j][k];
43e0eea495SMark     }
44e0eea495SMark     return *this;
45e0eea495SMark   }
46e0eea495SMark   KOKKOS_INLINE_FUNCTION // volatile add operator
479371c9d4SSatish Balay     void
489371c9d4SSatish Balay     operator+=(const volatile array_type &src) volatile {
49e0eea495SMark     for (int j = 0; j < LANDAU_DIM; j++) {
5052cdd6eaSMark       gg2[j] += src.gg2[j];
51ad540459SPierre Jolivet       for (int k = 0; k < LANDAU_DIM; k++) gg3[j][k] += src.gg3[j][k];
52e0eea495SMark     }
53e0eea495SMark   }
54e0eea495SMark };
5552cdd6eaSMark typedef array_type<PetscReal> TensorValueType; // used to simplify code below
569371c9d4SSatish Balay } // namespace landau_inner_red
57e0eea495SMark 
58e0eea495SMark namespace Kokkos { //reduction identity must be defined in Kokkos namespace
59e0eea495SMark template <>
6052cdd6eaSMark struct reduction_identity<landau_inner_red::TensorValueType> {
619371c9d4SSatish Balay   KOKKOS_FORCEINLINE_FUNCTION static landau_inner_red::TensorValueType sum() { return landau_inner_red::TensorValueType(); }
62e0eea495SMark };
639371c9d4SSatish Balay } // namespace Kokkos
64e0eea495SMark 
65e0eea495SMark extern "C" {
669371c9d4SSatish Balay PetscErrorCode LandauKokkosCreateMatMaps(P4estVertexMaps maps[], pointInterpolationP4est (*pointMaps)[LANDAU_MAX_Q_FACE], PetscInt Nf[], PetscInt Nq, PetscInt grid) {
67a587d139SMark   P4estVertexMaps                                                                                                                                     h_maps; /* host container */
688a6f2e61SMark Adams   const Kokkos::View<pointInterpolationP4est *[LANDAU_MAX_Q_FACE], Kokkos::LayoutRight, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>>   h_points((pointInterpolationP4est *)pointMaps, maps[grid].num_reduced);
698a6f2e61SMark Adams   const Kokkos::View<LandauIdx *[LANDAU_MAX_SPECIES][LANDAU_MAX_NQ], Kokkos::LayoutRight, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_gidx((LandauIdx *)maps[grid].gIdx, maps[grid].num_elements);
708a6f2e61SMark Adams   Kokkos::View<pointInterpolationP4est *[LANDAU_MAX_Q_FACE], Kokkos::LayoutRight>   *d_points = new Kokkos::View<pointInterpolationP4est *[LANDAU_MAX_Q_FACE], Kokkos::LayoutRight>("points", maps[grid].num_reduced);
718a6f2e61SMark Adams   Kokkos::View<LandauIdx *[LANDAU_MAX_SPECIES][LANDAU_MAX_NQ], Kokkos::LayoutRight> *d_gidx   = new Kokkos::View<LandauIdx *[LANDAU_MAX_SPECIES][LANDAU_MAX_NQ], Kokkos::LayoutRight>("gIdx", maps[grid].num_elements);
72a587d139SMark 
73a587d139SMark   PetscFunctionBegin;
74a587d139SMark   Kokkos::deep_copy(*d_gidx, h_gidx);
75a587d139SMark   Kokkos::deep_copy(*d_points, h_points);
768a6f2e61SMark Adams   h_maps.num_elements = maps[grid].num_elements;
778a6f2e61SMark Adams   h_maps.num_face     = maps[grid].num_face;
788a6f2e61SMark Adams   h_maps.num_reduced  = maps[grid].num_reduced;
798a6f2e61SMark Adams   h_maps.deviceType   = maps[grid].deviceType;
808a6f2e61SMark Adams   h_maps.numgrids     = maps[grid].numgrids;
818a6f2e61SMark Adams   h_maps.Nf           = Nf[grid];
82a587d139SMark   h_maps.c_maps       = (pointInterpolationP4est(*)[LANDAU_MAX_Q_FACE])d_points->data();
838a6f2e61SMark Adams   maps[grid].vp1      = (void *)d_points;
84a587d139SMark   h_maps.gIdx         = (LandauIdx(*)[LANDAU_MAX_SPECIES][LANDAU_MAX_NQ])d_gidx->data();
858a6f2e61SMark Adams   maps[grid].vp2      = (void *)d_gidx;
86a587d139SMark   {
87a587d139SMark     Kokkos::View<P4estVertexMaps, Kokkos::HostSpace> h_maps_k(&h_maps);
8811d22bbfSJunchao Zhang     Kokkos::View<P4estVertexMaps>                   *d_maps_k = new Kokkos::View<P4estVertexMaps>(Kokkos::create_mirror(Kokkos::DefaultExecutionSpace::memory_space(), h_maps_k));
89a587d139SMark     Kokkos::deep_copy(*d_maps_k, h_maps_k);
908a6f2e61SMark Adams     maps[grid].d_self = d_maps_k->data();
918a6f2e61SMark Adams     maps[grid].vp3    = (void *)d_maps_k;
92a587d139SMark   }
93a587d139SMark   PetscFunctionReturn(0);
94a587d139SMark }
959371c9d4SSatish Balay PetscErrorCode LandauKokkosDestroyMatMaps(P4estVertexMaps maps[], PetscInt num_grids) {
96362febeeSStefano Zampini   PetscFunctionBegin;
978a6f2e61SMark Adams   for (PetscInt grid = 0; grid < num_grids; grid++) {
988a6f2e61SMark Adams     auto a = static_cast<Kokkos::View<pointInterpolationP4est *[LANDAU_MAX_Q_FACE], Kokkos::LayoutRight> *>(maps[grid].vp1);
998a6f2e61SMark Adams     auto b = static_cast<Kokkos::View<LandauIdx *[LANDAU_MAX_SPECIES][LANDAU_MAX_NQ], Kokkos::LayoutRight> *>(maps[grid].vp2);
1008a6f2e61SMark Adams     auto c = static_cast<Kokkos::View<P4estVertexMaps *> *>(maps[grid].vp3);
1019371c9d4SSatish Balay     delete a;
1029371c9d4SSatish Balay     delete b;
1039371c9d4SSatish Balay     delete c;
1048a6f2e61SMark Adams   }
105a587d139SMark   PetscFunctionReturn(0);
106a587d139SMark }
107a587d139SMark 
1089371c9d4SSatish Balay PetscErrorCode LandauKokkosStaticDataSet(DM plex, const PetscInt Nq, const PetscInt batch_sz, const PetscInt num_grids, PetscInt a_numCells[], PetscInt a_species_offset[], PetscInt a_mat_offset[], PetscReal a_nu_alpha[], PetscReal a_nu_beta[], PetscReal a_invMass[], PetscReal a_invJ[], PetscReal a_x[], PetscReal a_y[], PetscReal a_z[], PetscReal a_w[], LandauStaticData *SData_d) {
109e0eea495SMark   PetscReal       *BB, *DD;
110e8d2b73aSMark Adams   PetscTabulation *Tf;
1118a6f2e61SMark Adams   PetscInt         dim;
1128a6f2e61SMark Adams   PetscInt         Nb = Nq, ip_offset[LANDAU_MAX_GRIDS + 1], ipf_offset[LANDAU_MAX_GRIDS + 1], elem_offset[LANDAU_MAX_GRIDS + 1], nip, IPf_sz, Nftot;
113e8d2b73aSMark Adams   PetscDS          prob;
114e0eea495SMark 
115e0eea495SMark   PetscFunctionBegin;
1169566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(plex, &dim));
1179566063dSJacob Faibussowitsch   PetscCall(DMGetDS(plex, &prob));
11863a3b9bcSJacob Faibussowitsch   PetscCheck(LANDAU_DIM == dim, PETSC_COMM_WORLD, PETSC_ERR_PLIB, "dim %" PetscInt_FMT " != LANDAU_DIM %d", dim, LANDAU_DIM);
1199566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTabulation(prob, &Tf));
1209371c9d4SSatish Balay   BB           = Tf[0]->T[0];
1219371c9d4SSatish Balay   DD           = Tf[0]->T[1];
1228a6f2e61SMark Adams   ip_offset[0] = ipf_offset[0] = elem_offset[0] = 0;
1238a6f2e61SMark Adams   nip                                           = 0;
1248a6f2e61SMark Adams   IPf_sz                                        = 0;
1258a6f2e61SMark Adams   for (PetscInt grid = 0; grid < num_grids; grid++) {
1268a6f2e61SMark Adams     PetscInt nfloc        = a_species_offset[grid + 1] - a_species_offset[grid];
1278a6f2e61SMark Adams     elem_offset[grid + 1] = elem_offset[grid] + a_numCells[grid];
1288a6f2e61SMark Adams     nip += a_numCells[grid] * Nq;
1298a6f2e61SMark Adams     ip_offset[grid + 1] = nip;
1308a6f2e61SMark Adams     IPf_sz += Nq * nfloc * a_numCells[grid];
1318a6f2e61SMark Adams     ipf_offset[grid + 1] = IPf_sz;
1328a6f2e61SMark Adams   }
1338a6f2e61SMark Adams   Nftot = a_species_offset[num_grids];
1349566063dSJacob Faibussowitsch   PetscCall(PetscKokkosInitializeCheck());
135e8d2b73aSMark Adams   {
1368a6f2e61SMark Adams     const Kokkos::View<PetscReal *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_alpha(a_nu_alpha, Nftot);
1378a6f2e61SMark Adams     auto                                                                                                            alpha = new Kokkos::View<PetscReal *, Kokkos::LayoutLeft>("alpha", Nftot);
138e8d2b73aSMark Adams     SData_d->alpha                                                                                                        = static_cast<void *>(alpha);
1398a6f2e61SMark Adams     const Kokkos::View<PetscReal *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_beta(a_nu_beta, Nftot);
1408a6f2e61SMark Adams     auto                                                                                                            beta = new Kokkos::View<PetscReal *, Kokkos::LayoutLeft>("beta", Nftot);
141e8d2b73aSMark Adams     SData_d->beta                                                                                                        = static_cast<void *>(beta);
1428a6f2e61SMark Adams     const Kokkos::View<PetscReal *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_invMass(a_invMass, Nftot);
1438a6f2e61SMark Adams     auto                                                                                                            invMass = new Kokkos::View<PetscReal *, Kokkos::LayoutLeft>("invMass", Nftot);
144e8d2b73aSMark Adams     SData_d->invMass                                                                                                        = static_cast<void *>(invMass);
145e8d2b73aSMark Adams     const Kokkos::View<PetscReal *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_BB(BB, Nq * Nb);
146e8d2b73aSMark Adams     auto                                                                                                            B = new Kokkos::View<PetscReal *, Kokkos::LayoutLeft>("B", Nq * Nb);
147e8d2b73aSMark Adams     SData_d->B                                                                                                        = static_cast<void *>(B);
148e8d2b73aSMark Adams     const Kokkos::View<PetscReal *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_DD(DD, Nq * Nb * dim);
149e8d2b73aSMark Adams     auto                                                                                                            D = new Kokkos::View<PetscReal *, Kokkos::LayoutLeft>("D", Nq * Nb * dim);
150e8d2b73aSMark Adams     SData_d->D                                                                                                        = static_cast<void *>(D);
151e8d2b73aSMark Adams     const Kokkos::View<PetscReal *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_invJ(a_invJ, nip * dim * dim);
152e8d2b73aSMark Adams     auto                                                                                                            invJ = new Kokkos::View<PetscReal *, Kokkos::LayoutLeft>("invJ", nip * dim * dim);
153e8d2b73aSMark Adams     SData_d->invJ                                                                                                        = static_cast<void *>(invJ);
154e8d2b73aSMark Adams     const Kokkos::View<PetscReal *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_x(a_x, nip);
155e8d2b73aSMark Adams     auto                                                                                                            x = new Kokkos::View<PetscReal *, Kokkos::LayoutLeft>("x", nip);
156e8d2b73aSMark Adams     SData_d->x                                                                                                        = static_cast<void *>(x);
157e8d2b73aSMark Adams     const Kokkos::View<PetscReal *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_y(a_y, nip);
158e8d2b73aSMark Adams     auto                                                                                                            y = new Kokkos::View<PetscReal *, Kokkos::LayoutLeft>("y", nip);
159e8d2b73aSMark Adams     SData_d->y                                                                                                        = static_cast<void *>(y);
160e8d2b73aSMark Adams     const Kokkos::View<PetscReal *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_w(a_w, nip);
161e8d2b73aSMark Adams     auto                                                                                                            w = new Kokkos::View<PetscReal *, Kokkos::LayoutLeft>("w", nip);
162e8d2b73aSMark Adams     SData_d->w                                                                                                        = static_cast<void *>(w);
163e8d2b73aSMark Adams 
164e8d2b73aSMark Adams     Kokkos::deep_copy(*alpha, h_alpha);
165e8d2b73aSMark Adams     Kokkos::deep_copy(*beta, h_beta);
166e8d2b73aSMark Adams     Kokkos::deep_copy(*invMass, h_invMass);
167e8d2b73aSMark Adams     Kokkos::deep_copy(*B, h_BB);
168e8d2b73aSMark Adams     Kokkos::deep_copy(*D, h_DD);
169e8d2b73aSMark Adams     Kokkos::deep_copy(*invJ, h_invJ);
170e8d2b73aSMark Adams     Kokkos::deep_copy(*x, h_x);
171e8d2b73aSMark Adams     Kokkos::deep_copy(*y, h_y);
172e8d2b73aSMark Adams     Kokkos::deep_copy(*w, h_w);
173e8d2b73aSMark Adams 
1748a6f2e61SMark Adams     if (dim == 3) {
175984ed092SMark Adams       const Kokkos::View<PetscReal *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_z(a_z, nip);
1768a6f2e61SMark Adams       auto                                                                                                            z = new Kokkos::View<PetscReal *, Kokkos::LayoutLeft>("z", nip);
1778a6f2e61SMark Adams       SData_d->z                                                                                                        = static_cast<void *>(z);
1788a6f2e61SMark Adams       Kokkos::deep_copy(*z, h_z);
1798a6f2e61SMark Adams     } else SData_d->z = NULL;
1808a6f2e61SMark Adams 
1818a6f2e61SMark Adams     //
1828a6f2e61SMark Adams     const Kokkos::View<PetscInt *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_NCells(a_numCells, num_grids);
1838a6f2e61SMark Adams     auto                                                                                                           nc = new Kokkos::View<PetscInt *, Kokkos::LayoutLeft>("NCells", num_grids);
1848a6f2e61SMark Adams     SData_d->NCells                                                                                                   = static_cast<void *>(nc);
1858a6f2e61SMark Adams     Kokkos::deep_copy(*nc, h_NCells);
1868a6f2e61SMark Adams 
1878a6f2e61SMark Adams     const Kokkos::View<PetscInt *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_species_offset(a_species_offset, num_grids + 1);
1888a6f2e61SMark Adams     auto                                                                                                           soff = new Kokkos::View<PetscInt *, Kokkos::LayoutLeft>("species_offset", num_grids + 1);
1898a6f2e61SMark Adams     SData_d->species_offset                                                                                             = static_cast<void *>(soff);
1908a6f2e61SMark Adams     Kokkos::deep_copy(*soff, h_species_offset);
1918a6f2e61SMark Adams 
1928a6f2e61SMark Adams     const Kokkos::View<PetscInt *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_mat_offset(a_mat_offset, num_grids + 1);
1938a6f2e61SMark Adams     auto                                                                                                           moff = new Kokkos::View<PetscInt *, Kokkos::LayoutLeft>("mat_offset", num_grids + 1);
1948a6f2e61SMark Adams     SData_d->mat_offset                                                                                                 = static_cast<void *>(moff);
1958a6f2e61SMark Adams     Kokkos::deep_copy(*moff, h_mat_offset);
1968a6f2e61SMark Adams 
1978a6f2e61SMark Adams     const Kokkos::View<PetscInt *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_ip_offset(ip_offset, num_grids + 1);
1988a6f2e61SMark Adams     auto                                                                                                           ipoff = new Kokkos::View<PetscInt *, Kokkos::LayoutLeft>("ip_offset", num_grids + 1);
1998a6f2e61SMark Adams     SData_d->ip_offset                                                                                                   = static_cast<void *>(ipoff);
2008a6f2e61SMark Adams     Kokkos::deep_copy(*ipoff, h_ip_offset);
2018a6f2e61SMark Adams 
2028a6f2e61SMark Adams     const Kokkos::View<PetscInt *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_elem_offset(elem_offset, num_grids + 1);
2038a6f2e61SMark Adams     auto                                                                                                           eoff = new Kokkos::View<PetscInt *, Kokkos::LayoutLeft>("elem_offset", num_grids + 1);
2048a6f2e61SMark Adams     SData_d->elem_offset                                                                                                = static_cast<void *>(eoff);
2058a6f2e61SMark Adams     Kokkos::deep_copy(*eoff, h_elem_offset);
2068a6f2e61SMark Adams 
2078a6f2e61SMark Adams     const Kokkos::View<PetscInt *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_ipf_offset(ipf_offset, num_grids + 1);
2088a6f2e61SMark Adams     auto                                                                                                           ipfoff = new Kokkos::View<PetscInt *, Kokkos::LayoutLeft>("ipf_offset", num_grids + 1);
2098a6f2e61SMark Adams     SData_d->ipf_offset                                                                                                   = static_cast<void *>(ipfoff);
2108a6f2e61SMark Adams     Kokkos::deep_copy(*ipfoff, h_ipf_offset);
2118a6f2e61SMark Adams #if defined(LANDAU_LAYOUT_LEFT) // preallocate dynamic data, no copy
2128fdabdddSMark Adams     auto ipfdf_data = new Kokkos::View<PetscReal ***, Kokkos::LayoutLeft>("fdf", batch_sz, dim + 1, IPf_sz);
2138a6f2e61SMark Adams #else
2148fdabdddSMark Adams     auto ipfdf_data = new Kokkos::View<PetscReal ***, Kokkos::LayoutRight>("fdf", batch_sz, dim + 1, IPf_sz);
2158a6f2e61SMark Adams #endif
2168a6f2e61SMark Adams     SData_d->ipfdf_data = static_cast<void *>(ipfdf_data);
2178fdabdddSMark Adams     auto Eq_m           = new Kokkos::View<PetscReal *, Kokkos::LayoutLeft>("Eq_m", Nftot); // allocate but do not set, same for whole batch
218e8d2b73aSMark Adams     SData_d->Eq_m       = static_cast<void *>(Eq_m);
219cada7fc7SMark Adams     const Kokkos::View<LandauIdx *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_coo_elem_offsets((LandauIdx *)SData_d->coo_elem_offsets, SData_d->coo_n_cellsTot + 1);
220cada7fc7SMark Adams     auto                                                                                                            coo_elem_offsets = new Kokkos::View<LandauIdx *, Kokkos::LayoutLeft>("coo_elem_offsets", SData_d->coo_n_cellsTot + 1);
221cada7fc7SMark Adams     const Kokkos::View<LandauIdx *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_coo_elem_fullNb((LandauIdx *)SData_d->coo_elem_fullNb, SData_d->coo_n_cellsTot);
222cada7fc7SMark Adams     auto                                                                                                            coo_elem_fullNb = new Kokkos::View<LandauIdx *, Kokkos::LayoutLeft>("coo_elem_offsets", SData_d->coo_n_cellsTot);
223cada7fc7SMark Adams     const Kokkos::View<LandauIdx *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_coo_elem_point_offsets((LandauIdx *)SData_d->coo_elem_point_offsets, SData_d->coo_n_cellsTot * (LANDAU_MAX_NQ + 1));
224cada7fc7SMark Adams     auto coo_elem_point_offsets = new Kokkos::View<LandauIdx *, Kokkos::LayoutLeft>("coo_elem_point_offsets", SData_d->coo_n_cellsTot * (LANDAU_MAX_NQ + 1));
225bfc784b7SMark Adams     // assign & copy
226bfc784b7SMark Adams     Kokkos::deep_copy(*coo_elem_offsets, h_coo_elem_offsets);
227bfc784b7SMark Adams     Kokkos::deep_copy(*coo_elem_fullNb, h_coo_elem_fullNb);
228bfc784b7SMark Adams     Kokkos::deep_copy(*coo_elem_point_offsets, h_coo_elem_point_offsets);
229bfc784b7SMark Adams     // need to free this now and use pointer space
2309566063dSJacob Faibussowitsch     PetscCall(PetscFree3(SData_d->coo_elem_offsets, SData_d->coo_elem_fullNb, SData_d->coo_elem_point_offsets));
231cada7fc7SMark Adams     SData_d->coo_elem_offsets       = static_cast<void *>(coo_elem_offsets);
232cada7fc7SMark Adams     SData_d->coo_elem_fullNb        = static_cast<void *>(coo_elem_fullNb);
233cada7fc7SMark Adams     SData_d->coo_elem_point_offsets = static_cast<void *>(coo_elem_point_offsets);
234a31f6053SMark Adams     auto coo_vals                   = new Kokkos::View<PetscScalar *, Kokkos::LayoutRight, Kokkos::DefaultExecutionSpace>("coo_vals", SData_d->coo_size);
235a31f6053SMark Adams     SData_d->coo_vals               = static_cast<void *>(coo_vals);
236e8d2b73aSMark Adams   }
2378a6f2e61SMark Adams   SData_d->maps = NULL; // not used
238e8d2b73aSMark Adams   PetscFunctionReturn(0);
239e8d2b73aSMark Adams }
240e8d2b73aSMark Adams 
2419371c9d4SSatish Balay PetscErrorCode LandauKokkosStaticDataClear(LandauStaticData *SData_d) {
242e8d2b73aSMark Adams   PetscFunctionBegin;
243e8d2b73aSMark Adams   if (SData_d->alpha) {
244e8d2b73aSMark Adams     auto alpha = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->alpha);
245e8d2b73aSMark Adams     delete alpha;
2468a6f2e61SMark Adams     SData_d->alpha = NULL;
247e8d2b73aSMark Adams     auto beta      = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->beta);
248e8d2b73aSMark Adams     delete beta;
249e8d2b73aSMark Adams     auto invMass = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->invMass);
250e8d2b73aSMark Adams     delete invMass;
251e8d2b73aSMark Adams     auto B = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->B);
252e8d2b73aSMark Adams     delete B;
253e8d2b73aSMark Adams     auto D = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->D);
254e8d2b73aSMark Adams     delete D;
255e8d2b73aSMark Adams     auto invJ = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->invJ);
256e8d2b73aSMark Adams     delete invJ;
257e8d2b73aSMark Adams     auto x = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->x);
258e8d2b73aSMark Adams     delete x;
259e8d2b73aSMark Adams     auto y = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->y);
260e8d2b73aSMark Adams     delete y;
2618a6f2e61SMark Adams     if (SData_d->z) {
262e8d2b73aSMark Adams       auto z = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->z);
263e8d2b73aSMark Adams       delete z;
2648a6f2e61SMark Adams     }
2658a6f2e61SMark Adams #if defined(LANDAU_LAYOUT_LEFT) // preallocate dynamic data, no copy
2668fdabdddSMark Adams     auto z = static_cast<Kokkos::View<PetscReal ***, Kokkos::LayoutLeft> *>(SData_d->ipfdf_data);
2678a6f2e61SMark Adams #else
2688fdabdddSMark Adams     auto z          = static_cast<Kokkos::View<PetscReal ***, Kokkos::LayoutRight> *>(SData_d->ipfdf_data);
2698a6f2e61SMark Adams #endif
2708a6f2e61SMark Adams     delete z;
271e8d2b73aSMark Adams     auto w = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->w);
272e8d2b73aSMark Adams     delete w;
273e8d2b73aSMark Adams     auto Eq_m = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->Eq_m);
274e8d2b73aSMark Adams     delete Eq_m;
2758a6f2e61SMark Adams     // offset
2768a6f2e61SMark Adams     auto nc = static_cast<Kokkos::View<PetscInt *, Kokkos::LayoutLeft> *>(SData_d->NCells);
2778a6f2e61SMark Adams     delete nc;
2788a6f2e61SMark Adams     auto soff = static_cast<Kokkos::View<PetscInt *, Kokkos::LayoutLeft> *>(SData_d->species_offset);
2798a6f2e61SMark Adams     delete soff;
2808a6f2e61SMark Adams     auto moff = static_cast<Kokkos::View<PetscInt *, Kokkos::LayoutLeft> *>(SData_d->mat_offset);
2818a6f2e61SMark Adams     delete moff;
2828a6f2e61SMark Adams     auto ipoff = static_cast<Kokkos::View<PetscInt *, Kokkos::LayoutLeft> *>(SData_d->ip_offset);
2838a6f2e61SMark Adams     delete ipoff;
2848a6f2e61SMark Adams     auto eoff = static_cast<Kokkos::View<PetscInt *, Kokkos::LayoutLeft> *>(SData_d->elem_offset);
2858a6f2e61SMark Adams     delete eoff;
2868a6f2e61SMark Adams     auto ipfoff = static_cast<Kokkos::View<PetscInt *, Kokkos::LayoutLeft> *>(SData_d->ipf_offset);
2878a6f2e61SMark Adams     delete ipfoff;
288bfc784b7SMark Adams     auto coo_elem_offsets = static_cast<Kokkos::View<LandauIdx *, Kokkos::LayoutLeft> *>((void *)SData_d->coo_elem_offsets);
289bfc784b7SMark Adams     delete coo_elem_offsets;
290bfc784b7SMark Adams     auto coo_elem_fullNb = static_cast<Kokkos::View<LandauIdx *, Kokkos::LayoutLeft> *>((void *)SData_d->coo_elem_fullNb);
291bfc784b7SMark Adams     delete coo_elem_fullNb;
292cada7fc7SMark Adams     auto coo_elem_point_offsets = static_cast<Kokkos::View<LandauIdx *, Kokkos::LayoutLeft> *>((void *)SData_d->coo_elem_point_offsets);
293bfc784b7SMark Adams     delete coo_elem_point_offsets;
294bfc784b7SMark Adams     SData_d->coo_elem_offsets       = NULL;
295bfc784b7SMark Adams     SData_d->coo_elem_point_offsets = NULL;
296bfc784b7SMark Adams     SData_d->coo_elem_fullNb        = NULL;
297a31f6053SMark Adams     auto coo_vals                   = static_cast<Kokkos::View<PetscScalar *, Kokkos::LayoutRight, Kokkos::DefaultExecutionSpace> *>((void *)SData_d->coo_vals);
298a31f6053SMark Adams     delete coo_vals;
299af0767daSMark Adams   }
300e8d2b73aSMark Adams   PetscFunctionReturn(0);
301e8d2b73aSMark Adams }
302e8d2b73aSMark Adams 
30359118022SMark Adams #define KOKKOS_SHARED_LEVEL 0 // 0 is shared, 1 is global
30459118022SMark Adams 
3058a6f2e61SMark Adams KOKKOS_INLINE_FUNCTION
3069371c9d4SSatish Balay PetscErrorCode landau_mat_assemble(PetscSplitCSRDataStructure d_mat, PetscScalar *coo_vals, const PetscScalar Aij, const PetscInt f, const PetscInt g, const PetscInt Nb, PetscInt moffset, const PetscInt elem, const PetscInt fieldA, const P4estVertexMaps *d_maps, const LandauIdx coo_elem_offsets[], const LandauIdx coo_elem_fullNb[], const LandauIdx (*coo_elem_point_offsets)[LANDAU_MAX_NQ + 1], const PetscInt glb_elem_idx, const PetscInt bid_coo_sz_batch) {
307ad4b5651SMark Adams   PetscInt               idx, q, nr, nc, d;
3088a6f2e61SMark Adams   const LandauIdx *const Idxs                         = &d_maps->gIdx[elem][fieldA][0];
309bfc784b7SMark Adams   PetscScalar            row_scale[LANDAU_MAX_Q_FACE] = {0}, col_scale[LANDAU_MAX_Q_FACE] = {0};
310bfc784b7SMark Adams   if (coo_vals) { // mirror (i,j) in CreateStaticGPUData
311bfc784b7SMark Adams     const int fullNb = coo_elem_fullNb[glb_elem_idx], fullNb2 = fullNb * fullNb;
312bfc784b7SMark Adams     idx = Idxs[f];
313bfc784b7SMark Adams     if (idx >= 0) {
314bfc784b7SMark Adams       nr           = 1;
315bfc784b7SMark Adams       row_scale[0] = 1.;
316bfc784b7SMark Adams     } else {
317bfc784b7SMark Adams       idx = -idx - 1;
318bfc784b7SMark Adams       for (q = 0, nr = 0; q < d_maps->num_face; q++, nr++) {
319bfc784b7SMark Adams         if (d_maps->c_maps[idx][q].gid < 0) break;
320bfc784b7SMark Adams         row_scale[q] = d_maps->c_maps[idx][q].scale;
321bfc784b7SMark Adams       }
322bfc784b7SMark Adams     }
323bfc784b7SMark Adams     idx = Idxs[g];
324bfc784b7SMark Adams     if (idx >= 0) {
325bfc784b7SMark Adams       nc           = 1;
326bfc784b7SMark Adams       col_scale[0] = 1.;
327bfc784b7SMark Adams     } else {
328bfc784b7SMark Adams       idx = -idx - 1;
329bfc784b7SMark Adams       nc  = d_maps->num_face;
330bfc784b7SMark Adams       for (q = 0, nc = 0; q < d_maps->num_face; q++, nc++) {
331bfc784b7SMark Adams         if (d_maps->c_maps[idx][q].gid < 0) break;
332bfc784b7SMark Adams         col_scale[q] = d_maps->c_maps[idx][q].scale;
333bfc784b7SMark Adams       }
334bfc784b7SMark Adams     }
335cada7fc7SMark Adams     const int idx0 = bid_coo_sz_batch + coo_elem_offsets[glb_elem_idx] + fieldA * fullNb2 + fullNb * coo_elem_point_offsets[glb_elem_idx][f] + nr * coo_elem_point_offsets[glb_elem_idx][g];
336bfc784b7SMark Adams     for (int q = 0, idx2 = idx0; q < nr; q++) {
337ad540459SPierre Jolivet       for (int d = 0; d < nc; d++, idx2++) coo_vals[idx2] = row_scale[q] * col_scale[d] * Aij;
338bfc784b7SMark Adams     }
339bfc784b7SMark Adams   } else {
340bfc784b7SMark Adams     PetscScalar vals[LANDAU_MAX_Q_FACE * LANDAU_MAX_Q_FACE] = {0};
341ad4b5651SMark Adams     PetscInt    rows[LANDAU_MAX_Q_FACE], cols[LANDAU_MAX_Q_FACE];
342ad4b5651SMark Adams     idx = Idxs[f];
3438a6f2e61SMark Adams     if (idx >= 0) {
3448a6f2e61SMark Adams       nr           = 1;
345ad4b5651SMark Adams       rows[0]      = idx;
346ad4b5651SMark Adams       row_scale[0] = 1.;
3478a6f2e61SMark Adams     } else {
348ad4b5651SMark Adams       idx = -idx - 1;
349ad4b5651SMark Adams       for (q = 0, nr = 0; q < d_maps->num_face; q++, nr++) {
350ad4b5651SMark Adams         if (d_maps->c_maps[idx][q].gid < 0) break;
351ad4b5651SMark Adams         rows[q]      = d_maps->c_maps[idx][q].gid;
352ad4b5651SMark Adams         row_scale[q] = d_maps->c_maps[idx][q].scale;
3538a6f2e61SMark Adams       }
354ad4b5651SMark Adams     }
355ad4b5651SMark Adams     idx = Idxs[g];
3568a6f2e61SMark Adams     if (idx >= 0) {
3578a6f2e61SMark Adams       nc           = 1;
358ad4b5651SMark Adams       cols[0]      = idx;
359ad4b5651SMark Adams       col_scale[0] = 1.;
3608a6f2e61SMark Adams     } else {
361ad4b5651SMark Adams       idx = -idx - 1;
362ad4b5651SMark Adams       for (q = 0, nc = 0; q < d_maps->num_face; q++, nc++) {
363ad4b5651SMark Adams         if (d_maps->c_maps[idx][q].gid < 0) break;
364ad4b5651SMark Adams         cols[q]      = d_maps->c_maps[idx][q].gid;
365ad4b5651SMark Adams         col_scale[q] = d_maps->c_maps[idx][q].scale;
3668a6f2e61SMark Adams       }
367ad4b5651SMark Adams     }
368bfc784b7SMark Adams 
369ad4b5651SMark Adams     for (q = 0; q < nr; q++) rows[q] = rows[q] + moffset;
370ad4b5651SMark Adams     for (q = 0; q < nc; q++) cols[q] = cols[q] + moffset;
3718a6f2e61SMark Adams     for (q = 0; q < nr; q++) {
372ad540459SPierre Jolivet       for (d = 0; d < nc; d++) vals[q * nc + d] = row_scale[q] * col_scale[d] * Aij;
3738a6f2e61SMark Adams     }
374ad4b5651SMark Adams     MatSetValuesDevice(d_mat, nr, rows, nc, cols, vals, ADD_VALUES);
375bfc784b7SMark Adams   }
3768a6f2e61SMark Adams   return 0;
3778a6f2e61SMark Adams }
3788a6f2e61SMark Adams 
3799371c9d4SSatish Balay PetscErrorCode LandauKokkosJacobian(DM plex[], const PetscInt Nq, const PetscInt batch_sz, const PetscInt num_grids, const PetscInt a_numCells[], PetscReal a_Eq_m[], PetscScalar a_elem_closure[], const PetscScalar a_xarray[], const LandauStaticData *SData_d, const PetscReal shift, const PetscLogEvent events[], const PetscInt a_mat_offset[], const PetscInt a_species_offset[], Mat subJ[], Mat JacP) {
380e8d2b73aSMark Adams   using scr_mem_t                   = Kokkos::DefaultExecutionSpace::scratch_memory_space;
38119be780dSMark Adams   using real2_scr_t                 = Kokkos::View<PetscScalar **, Kokkos::LayoutRight, scr_mem_t>;
382e8d2b73aSMark Adams   using g2_scr_t                    = Kokkos::View<PetscReal ***, Kokkos::LayoutRight, scr_mem_t>;
383e8d2b73aSMark Adams   using g3_scr_t                    = Kokkos::View<PetscReal ****, Kokkos::LayoutRight, scr_mem_t>;
3848fdabdddSMark Adams   PetscInt                   Nb     = Nq, dim, num_cells_max, Nf_max, num_cells_batch;
385dbabbaf5SMark Adams   int                        nfaces = 0, vector_size = 512 / Nq;
386e8d2b73aSMark Adams   LandauCtx                 *ctx;
387e8d2b73aSMark Adams   PetscReal                 *d_Eq_m     = NULL;
3888a6f2e61SMark Adams   PetscScalar               *d_vertex_f = NULL;
3898a6f2e61SMark Adams   P4estVertexMaps           *maps[LANDAU_MAX_GRIDS]; // this gets captured
3908a6f2e61SMark Adams   PetscSplitCSRDataStructure d_mat;
3918fdabdddSMark Adams   PetscContainer             container;
392bd08a171SMark Adams   const int                  conc = Kokkos::DefaultExecutionSpace().concurrency(), openmp = !!(conc < 1000), team_size = (openmp == 0) ? Nq : 1;
393bfc784b7SMark Adams   const PetscInt             coo_sz_batch       = SData_d->coo_size / batch_sz;                                                 // capture
394e8d2b73aSMark Adams   auto                       d_alpha_k          = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->alpha); //static data
395e8d2b73aSMark Adams   const PetscReal           *d_alpha            = d_alpha_k->data();
3968a6f2e61SMark Adams   const PetscInt             Nftot              = d_alpha_k->size(); // total number of species
397e8d2b73aSMark Adams   auto                       d_beta_k           = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->beta);
398e8d2b73aSMark Adams   const PetscReal           *d_beta             = d_beta_k->data();
399e8d2b73aSMark Adams   auto                       d_invMass_k        = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->invMass);
400e8d2b73aSMark Adams   const PetscReal           *d_invMass          = d_invMass_k->data();
401e8d2b73aSMark Adams   auto                       d_B_k              = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->B);
402e8d2b73aSMark Adams   const PetscReal           *d_BB               = d_B_k->data();
403e8d2b73aSMark Adams   auto                       d_D_k              = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->D);
404e8d2b73aSMark Adams   const PetscReal           *d_DD               = d_D_k->data();
405e8d2b73aSMark Adams   auto                       d_invJ_k           = *static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->invJ); // use Kokkos vector in kernels
406e8d2b73aSMark Adams   auto                       d_x_k              = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->x);     //static data
407e8d2b73aSMark Adams   const PetscReal           *d_x                = d_x_k->data();
408e8d2b73aSMark Adams   auto                       d_y_k              = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->y); //static data
409e8d2b73aSMark Adams   const PetscReal           *d_y                = d_y_k->data();
410e8d2b73aSMark Adams   auto                       d_z_k              = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->z); //static data
4118a6f2e61SMark Adams   const PetscReal           *d_z                = (LANDAU_DIM == 3) ? d_z_k->data() : NULL;
4128a6f2e61SMark Adams   auto                       d_w_k              = *static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->w); //static data
4138a6f2e61SMark Adams   const PetscReal           *d_w                = d_w_k.data();
4148fdabdddSMark Adams   // grid offsets - single vertex grid data
4158a6f2e61SMark Adams   auto                       d_numCells_k       = static_cast<Kokkos::View<PetscInt *, Kokkos::LayoutLeft> *>(SData_d->NCells);
4168a6f2e61SMark Adams   const PetscInt            *d_numCells         = d_numCells_k->data();
4178a6f2e61SMark Adams   auto                       d_species_offset_k = static_cast<Kokkos::View<PetscInt *, Kokkos::LayoutLeft> *>(SData_d->species_offset);
4188a6f2e61SMark Adams   const PetscInt            *d_species_offset   = d_species_offset_k->data();
4198a6f2e61SMark Adams   auto                       d_mat_offset_k     = static_cast<Kokkos::View<PetscInt *, Kokkos::LayoutLeft> *>(SData_d->mat_offset);
4208a6f2e61SMark Adams   const PetscInt            *d_mat_offset       = d_mat_offset_k->data();
4218a6f2e61SMark Adams   auto                       d_ip_offset_k      = static_cast<Kokkos::View<PetscInt *, Kokkos::LayoutLeft> *>(SData_d->ip_offset);
4228a6f2e61SMark Adams   const PetscInt            *d_ip_offset        = d_ip_offset_k->data();
4238a6f2e61SMark Adams   auto                       d_ipf_offset_k     = static_cast<Kokkos::View<PetscInt *, Kokkos::LayoutLeft> *>(SData_d->ipf_offset);
4248a6f2e61SMark Adams   const PetscInt            *d_ipf_offset       = d_ipf_offset_k->data();
4258a6f2e61SMark Adams   auto                       d_elem_offset_k    = static_cast<Kokkos::View<PetscInt *, Kokkos::LayoutLeft> *>(SData_d->elem_offset);
4268a6f2e61SMark Adams   const PetscInt            *d_elem_offset      = d_elem_offset_k->data();
4278fdabdddSMark Adams #if defined(LANDAU_LAYOUT_LEFT) // preallocate dynamic data, including batched vertices
4288fdabdddSMark Adams   Kokkos::View<PetscReal ***, Kokkos::LayoutLeft> d_fdf_k = *static_cast<Kokkos::View<PetscReal ***, Kokkos::LayoutLeft> *>(SData_d->ipfdf_data);
4298a6f2e61SMark Adams #else
4308fdabdddSMark Adams   Kokkos::View<PetscReal ***, Kokkos::LayoutRight> d_fdf_k = *static_cast<Kokkos::View<PetscReal ***, Kokkos::LayoutRight> *>(SData_d->ipfdf_data);
4318a6f2e61SMark Adams #endif
4328fdabdddSMark Adams   auto       d_Eq_m_k                                     = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->Eq_m); // static storage, dynamci data - E(t), copy later, single vertex
433bfc784b7SMark Adams   // COO
434cada7fc7SMark Adams   auto       d_coo_elem_offsets_k                         = static_cast<Kokkos::View<LandauIdx *, Kokkos::LayoutLeft> *>(SData_d->coo_elem_offsets);
435cada7fc7SMark Adams   LandauIdx *d_coo_elem_offsets                           = (SData_d->coo_size == 0) ? NULL : d_coo_elem_offsets_k->data();
436cada7fc7SMark Adams   auto       d_coo_elem_fullNb_k                          = static_cast<Kokkos::View<LandauIdx *, Kokkos::LayoutLeft> *>(SData_d->coo_elem_fullNb);
437cada7fc7SMark Adams   LandauIdx *d_coo_elem_fullNb                            = (SData_d->coo_size == 0) ? NULL : d_coo_elem_fullNb_k->data();
438cada7fc7SMark Adams   auto       d_coo_elem_point_offsets_k                   = static_cast<Kokkos::View<LandauIdx *, Kokkos::LayoutLeft> *>(SData_d->coo_elem_point_offsets);
439cada7fc7SMark Adams   LandauIdx(*d_coo_elem_point_offsets)[LANDAU_MAX_NQ + 1] = (SData_d->coo_size == 0) ? NULL : (LandauIdx(*)[LANDAU_MAX_NQ + 1]) d_coo_elem_point_offsets_k->data();
440a31f6053SMark Adams   auto         d_coo_vals_k                               = static_cast<Kokkos::View<PetscScalar *, Kokkos::LayoutRight> *>(SData_d->coo_vals);
441a31f6053SMark Adams   PetscScalar *d_coo_vals                                 = (SData_d->coo_size == 0) ? NULL : d_coo_vals_k->data();
4428fdabdddSMark Adams 
443e8d2b73aSMark Adams   PetscFunctionBegin;
444a31f6053SMark Adams   while (vector_size & (vector_size - 1)) vector_size = vector_size & (vector_size - 1);
445dbabbaf5SMark Adams   if (vector_size > 16) vector_size = 16; // printf("DEBUG\n");
4469566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(events[3], 0, 0, 0, 0));
4479566063dSJacob Faibussowitsch   PetscCall(DMGetApplicationContext(plex[0], &ctx));
44828b400f6SJacob Faibussowitsch   PetscCheck(ctx, PETSC_COMM_SELF, PETSC_ERR_PLIB, "no context");
4499566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(plex[0], &dim));
45063a3b9bcSJacob Faibussowitsch   PetscCheck(LANDAU_DIM == dim, PETSC_COMM_WORLD, PETSC_ERR_PLIB, "dim %" PetscInt_FMT " != LANDAU_DIM %d", dim, LANDAU_DIM);
451a587d139SMark   if (ctx->gpu_assembly) {
4529566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)JacP, "assembly_maps", (PetscObject *)&container));
453bfc784b7SMark Adams     if (container) {
454a587d139SMark       P4estVertexMaps *h_maps = NULL;
4559566063dSJacob Faibussowitsch       PetscCall(PetscContainerGetPointer(container, (void **)&h_maps));
4568a6f2e61SMark Adams       for (PetscInt grid = 0; grid < num_grids; grid++) {
4578a6f2e61SMark Adams         if (h_maps[grid].d_self) {
4588a6f2e61SMark Adams           maps[grid] = h_maps[grid].d_self;
4598a6f2e61SMark Adams           nfaces     = h_maps[grid].num_face; // nface=0 for CPU assembly
460a587d139SMark         } else {
461a587d139SMark           SETERRQ(PETSC_COMM_SELF, PETSC_ERR_PLIB, "GPU assembly but no metadata in container");
462a587d139SMark         }
4638a6f2e61SMark Adams       }
464bfc784b7SMark Adams       if (!d_coo_vals) {
465a587d139SMark         // this does the setup the first time called
4669566063dSJacob Faibussowitsch         PetscCall(MatKokkosGetDeviceMatWrite(JacP, &d_mat));
467bfc784b7SMark Adams       } else {
4688fdabdddSMark Adams         d_mat = NULL;
469a587d139SMark       }
470bfc784b7SMark Adams     } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_PLIB, "GPU assembly but no metadata in container");
471a587d139SMark   } else {
4728a6f2e61SMark Adams     for (PetscInt grid = 0; grid < num_grids; grid++) maps[grid] = NULL;
4738a6f2e61SMark Adams     nfaces    = 0;
4748fdabdddSMark Adams     d_mat     = NULL;
4758fdabdddSMark Adams     container = NULL;
476a587d139SMark   }
4778fdabdddSMark Adams   num_cells_batch = Nf_max = num_cells_max = 0;
4788a6f2e61SMark Adams   for (PetscInt grid = 0; grid < num_grids; grid++) {
4798a6f2e61SMark Adams     int Nfloc = a_species_offset[grid + 1] - a_species_offset[grid];
4808a6f2e61SMark Adams     if (Nfloc > Nf_max) Nf_max = Nfloc;
4818a6f2e61SMark Adams     if (a_numCells[grid] > num_cells_max) num_cells_max = a_numCells[grid];
4828fdabdddSMark Adams     num_cells_batch += a_numCells[grid]; // we don't have a host element offset here (but in ctx)
4838a6f2e61SMark Adams   }
484d9008a5dSMark Adams   const int elem_mat_num_cells_max_grid = container ? 0 : num_cells_max;
485bfbbad94Smarkadams4 #ifdef LAND_SUPPORT_CPU_ASS
486bfbbad94Smarkadams4   const int                                           totDim_max = Nf_max * Nq, elem_mat_size_max = totDim_max * totDim_max;
487a31f6053SMark Adams   Kokkos::View<PetscScalar ****, Kokkos::LayoutRight> d_elem_mats("element matrices", batch_sz, num_grids, elem_mat_num_cells_max_grid, elem_mat_size_max); // not used (cpu assembly)
488bfbbad94Smarkadams4 #endif
4898a6f2e61SMark Adams   const Kokkos::View<PetscReal *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_Eq_m_k(a_Eq_m, Nftot);
4908a6f2e61SMark Adams   if (a_elem_closure || a_xarray) {
491e8d2b73aSMark Adams     Kokkos::deep_copy(*d_Eq_m_k, h_Eq_m_k);
492e8d2b73aSMark Adams     d_Eq_m = d_Eq_m_k->data();
4938a6f2e61SMark Adams   } else d_Eq_m = NULL;
4949566063dSJacob Faibussowitsch   PetscCall(PetscKokkosInitializeCheck());
4959566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(events[3], 0, 0, 0, 0));
4968a6f2e61SMark Adams   if (a_elem_closure || a_xarray) { // Jacobian, create f & df
4978a6f2e61SMark Adams     Kokkos::View<PetscScalar *, Kokkos::LayoutLeft> *d_vertex_f_k = NULL;
4989566063dSJacob Faibussowitsch     PetscCall(PetscLogEventBegin(events[1], 0, 0, 0, 0));
4998a6f2e61SMark Adams     if (a_elem_closure) {
5008a6f2e61SMark Adams       PetscInt closure_sz = 0; // argh, don't have this on the host!!!
5018a6f2e61SMark Adams       for (PetscInt grid = 0; grid < num_grids; grid++) {
5028a6f2e61SMark Adams         PetscInt nfloc = a_species_offset[grid + 1] - a_species_offset[grid];
5038a6f2e61SMark Adams         closure_sz += Nq * nfloc * a_numCells[grid];
5048a6f2e61SMark Adams       }
5058fdabdddSMark Adams       closure_sz *= batch_sz;
5068a6f2e61SMark Adams       d_vertex_f_k = new Kokkos::View<PetscScalar *, Kokkos::LayoutLeft>("closure", closure_sz);
5078a6f2e61SMark Adams       const Kokkos::View<PetscScalar *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_closure_k(a_elem_closure, closure_sz); // Vertex data for each element
5088a6f2e61SMark Adams       Kokkos::deep_copy(*d_vertex_f_k, h_closure_k);
5098a6f2e61SMark Adams       d_vertex_f = d_vertex_f_k->data();
510af0767daSMark Adams     } else {
5118a6f2e61SMark Adams       d_vertex_f = (PetscScalar *)a_xarray;
512af0767daSMark Adams     }
5139566063dSJacob Faibussowitsch     PetscCall(PetscLogEventEnd(events[1], 0, 0, 0, 0));
5149566063dSJacob Faibussowitsch     PetscCall(PetscLogEventBegin(events[8], 0, 0, 0, 0));
5159566063dSJacob Faibussowitsch     PetscCall(PetscLogGpuTimeBegin());
51619be780dSMark Adams 
51719be780dSMark Adams     const int scr_bytes_fdf = real2_scr_t::shmem_size(Nf_max, Nb);
518dbabbaf5SMark Adams     PetscCall(PetscInfo(plex[0], "df & f shared memory size: %d bytes in level, %d num cells total=%d, team size=%d, vector size=%d, #face=%d, Nf_max=%d\n", scr_bytes_fdf, KOKKOS_SHARED_LEVEL, num_cells_batch * batch_sz, team_size, vector_size, nfaces, Nf_max));
5199371c9d4SSatish Balay     Kokkos::parallel_for(
5209371c9d4SSatish Balay       "f, df", Kokkos::TeamPolicy<>(num_cells_batch * batch_sz, team_size, /* Kokkos::AUTO */ vector_size).set_scratch_size(KOKKOS_SHARED_LEVEL, Kokkos::PerTeam(scr_bytes_fdf)), KOKKOS_LAMBDA(const team_member team) {
5218fdabdddSMark Adams         const PetscInt b_Nelem = d_elem_offset[num_grids], b_elem_idx = team.league_rank() % b_Nelem, b_id = team.league_rank() / b_Nelem, IPf_sz_glb = d_ipf_offset[num_grids];
5228a6f2e61SMark Adams         // find my grid
5238fdabdddSMark Adams         PetscInt       grid = 0;
5248fdabdddSMark Adams         while (b_elem_idx >= d_elem_offset[grid + 1]) grid++;
5258a6f2e61SMark Adams         {
5268fdabdddSMark Adams           const PetscInt loc_nip = d_numCells[grid] * Nq, loc_Nf = d_species_offset[grid + 1] - d_species_offset[grid], loc_elem = b_elem_idx - d_elem_offset[grid];
5278fdabdddSMark Adams           const PetscInt moffset = LAND_MOFFSET(b_id, grid, batch_sz, num_grids, d_mat_offset);
52819be780dSMark Adams           {
52919be780dSMark Adams             real2_scr_t      s_coef_k(team.team_scratch(KOKKOS_SHARED_LEVEL), Nf_max, Nb);
53019be780dSMark Adams             PetscScalar     *coef;
5318fdabdddSMark Adams             const PetscReal *invJe = &d_invJ_k((d_ip_offset[grid] + loc_elem * Nq) * dim * dim);
532a587d139SMark             // un pack IPData
5338a6f2e61SMark Adams             if (!maps[grid]) {
5348fdabdddSMark Adams               coef = &d_vertex_f[b_id * IPf_sz_glb + d_ipf_offset[grid] + loc_elem * Nb * loc_Nf]; // closure and IP indexing are the same
535af0767daSMark Adams             } else {
53619be780dSMark Adams               coef = s_coef_k.data();
53719be780dSMark Adams               Kokkos::parallel_for(Kokkos::TeamThreadRange(team, 0, (int)loc_Nf), [=](int f) {
53819be780dSMark Adams                 //for (int f = 0; f < loc_Nf; ++f) {
53919be780dSMark Adams                 Kokkos::parallel_for(Kokkos::ThreadVectorRange(team, 0, (int)Nb), [=](int b) {
54019be780dSMark Adams                   //for (int b = 0; b < Nb; ++b) {
54119be780dSMark Adams                   LandauIdx idx = maps[grid]->gIdx[loc_elem][f][b];
542af0767daSMark Adams                   if (idx >= 0) {
54319be780dSMark Adams                     coef[f * Nb + b] = d_vertex_f[idx + moffset]; // xarray data, not IP, need raw array to deal with CPU assemble case (not used)
544af0767daSMark Adams                   } else {
545af0767daSMark Adams                     idx              = -idx - 1;
54619be780dSMark Adams                     coef[f * Nb + b] = 0;
5478a6f2e61SMark Adams                     for (int q = 0; q < maps[grid]->num_face; q++) {
5488a6f2e61SMark Adams                       PetscInt    id    = maps[grid]->c_maps[idx][q].gid;
5498a6f2e61SMark Adams                       PetscScalar scale = maps[grid]->c_maps[idx][q].scale;
550f26f10aaSMark Adams                       if (id >= 0) coef[f * Nb + b] += scale * d_vertex_f[id + moffset];
551af0767daSMark Adams                     }
552af0767daSMark Adams                   }
55319be780dSMark Adams                 });
55419be780dSMark Adams               });
555af0767daSMark Adams             }
55619be780dSMark Adams             team.team_barrier();
557a587d139SMark             Kokkos::parallel_for(Kokkos::TeamThreadRange(team, 0, Nq), [=](int myQi) {
5588fdabdddSMark Adams               const PetscReal *const invJ = &invJe[myQi * dim * dim]; // b_elem_idx: batch element index
559a587d139SMark               const PetscReal       *Bq = &d_BB[myQi * Nb], *Dq = &d_DD[myQi * Nb * dim];
5608fdabdddSMark Adams               Kokkos::parallel_for(Kokkos::ThreadVectorRange(team, 0, (int)loc_Nf), [=](int f) {
561a587d139SMark                 PetscInt       b, e, d;
562e8d2b73aSMark Adams                 PetscReal      refSpaceDer[LANDAU_DIM];
5638fdabdddSMark Adams                 const PetscInt idx    = d_ipf_offset[grid] + f * loc_nip + loc_elem * Nq + myQi;
5648fdabdddSMark Adams                 d_fdf_k(b_id, 0, idx) = 0.0;
565a587d139SMark                 for (d = 0; d < LANDAU_DIM; ++d) refSpaceDer[d] = 0.0;
566a587d139SMark                 for (b = 0; b < Nb; ++b) {
56719be780dSMark Adams                   d_fdf_k(b_id, 0, idx) += Bq[b] * PetscRealPart(coef[f * Nb + b]);
56819be780dSMark Adams                   for (d = 0; d < dim; ++d) refSpaceDer[d] += Dq[b * dim + d] * PetscRealPart(coef[f * Nb + b]);
569a587d139SMark                 }
570a587d139SMark                 for (d = 0; d < dim; ++d) {
571ad540459SPierre Jolivet                   for (e = 0, d_fdf_k(b_id, d + 1, idx) = 0.0; e < dim; ++e) d_fdf_k(b_id, d + 1, idx) += invJ[e * dim + d] * refSpaceDer[e];
572a587d139SMark                 }
5738a6f2e61SMark Adams               }); // f
5748a6f2e61SMark Adams             });   // myQi
5758a6f2e61SMark Adams           }
57619be780dSMark Adams           team.team_barrier();
57719be780dSMark Adams         } // 'grid' scope
5788a6f2e61SMark Adams       }); // global elems - fdf
5798a6f2e61SMark Adams     Kokkos::fence();
580bfbbad94Smarkadams4     PetscCall(PetscLogGpuTimeEnd());
5819566063dSJacob Faibussowitsch     PetscCall(PetscLogEventEnd(events[8], 0, 0, 0, 0));
582e6118d12SMark Adams     // Jacobian
583d9008a5dSMark Adams     int maximum_shared_mem_size = 64000;
584*a16fd2c9SJacob Faibussowitsch 
585*a16fd2c9SJacob Faibussowitsch     if (PetscDeviceConfiguredFor_Internal(PETSC_DEVICE_DEFAULT)) {
586*a16fd2c9SJacob Faibussowitsch       // FIXME: remove the configuredfor check once the PETSC_DEVICE_HOST MR is merged in
587*a16fd2c9SJacob Faibussowitsch       PetscDevice device;
588*a16fd2c9SJacob Faibussowitsch 
589*a16fd2c9SJacob Faibussowitsch       PetscCall(PetscDeviceGetDefault_Internal(&device));
590*a16fd2c9SJacob Faibussowitsch       PetscCall(PetscDeviceGetAttribute(device, PETSC_DEVICE_ATTR_SIZE_T_SHARED_MEM_PER_BLOCK, &maximum_shared_mem_size));
591*a16fd2c9SJacob Faibussowitsch     }
592d9008a5dSMark Adams     const int jac_scr_bytes    = 2 * (g2_scr_t::shmem_size(dim, Nf_max, Nq) + g3_scr_t::shmem_size(dim, dim, Nf_max, Nq));
593d9008a5dSMark Adams     const int jac_shared_level = (jac_scr_bytes > maximum_shared_mem_size) ? 1 : KOKKOS_SHARED_LEVEL;
59481451871SMark Adams     auto      jac_lambda       = KOKKOS_LAMBDA(const team_member team) {
5958fdabdddSMark Adams                  const PetscInt b_Nelem = d_elem_offset[num_grids], b_elem_idx = team.league_rank() % b_Nelem, b_id = team.league_rank() / b_Nelem;
5968a6f2e61SMark Adams                  // find my grid
5978fdabdddSMark Adams                  PetscInt       grid = 0;
5988fdabdddSMark Adams                  while (b_elem_idx >= d_elem_offset[grid + 1]) grid++;
5998a6f2e61SMark Adams       {
60019be780dSMark Adams                    const PetscInt loc_Nf = d_species_offset[grid + 1] - d_species_offset[grid], loc_elem = b_elem_idx - d_elem_offset[grid];
6018fdabdddSMark Adams                    const PetscInt moffset = LAND_MOFFSET(b_id, grid, batch_sz, num_grids, d_mat_offset);
602bfbbad94Smarkadams4                    const PetscInt f_off   = d_species_offset[grid];
603bfbbad94Smarkadams4 #ifdef LAND_SUPPORT_CPU_ASS
604bfbbad94Smarkadams4         const PetscInt totDim = loc_Nf * Nq;
605bfbbad94Smarkadams4 #endif
606d9008a5dSMark Adams         g2_scr_t g2(team.team_scratch(jac_shared_level), dim, loc_Nf, Nq);
607d9008a5dSMark Adams         g3_scr_t g3(team.team_scratch(jac_shared_level), dim, dim, loc_Nf, Nq);
608d9008a5dSMark Adams         g2_scr_t gg2(team.team_scratch(jac_shared_level), dim, loc_Nf, Nq);
609d9008a5dSMark Adams         g3_scr_t gg3(team.team_scratch(jac_shared_level), dim, dim, loc_Nf, Nq);
610e0eea495SMark         // get g2[] & g3[]
611e0eea495SMark         Kokkos::parallel_for(Kokkos::TeamThreadRange(team, 0, Nq), [=](int myQi) {
612e0eea495SMark           using Kokkos::parallel_reduce;
6138fdabdddSMark Adams           const PetscInt                    jpidx_glb = d_ip_offset[grid] + loc_elem * Nq + myQi;
6148fdabdddSMark Adams           const PetscReal                  *invJ      = &d_invJ_k(jpidx_glb * dim * dim);
6158fdabdddSMark Adams           const PetscReal                   vj[3] = {d_x[jpidx_glb], d_y[jpidx_glb], d_z ? d_z[jpidx_glb] : 0}, wj = d_w[jpidx_glb];
6168a6f2e61SMark Adams           landau_inner_red::TensorValueType gg_temp; // reduce on part of gg2 and g33 for IP jpidx_g
6179371c9d4SSatish Balay           Kokkos::parallel_reduce(
6189371c9d4SSatish Balay             Kokkos::ThreadVectorRange(team, (int)d_ip_offset[num_grids]),
6199371c9d4SSatish Balay             [=](const int &ipidx, landau_inner_red::TensorValueType &ggg) {
620e8d2b73aSMark Adams               const PetscReal wi = d_w[ipidx], x = d_x[ipidx], y = d_y[ipidx];
62152cdd6eaSMark               PetscReal       temp1[3] = {0, 0, 0}, temp2 = 0;
6228fdabdddSMark Adams               PetscInt        fieldA, d2, d3, f_off_r, grid_r, ipidx_g, nip_loc_r, loc_Nf_r;
623e0eea495SMark #if LANDAU_DIM == 2
6248a6f2e61SMark Adams               PetscReal Ud[2][2], Uk[2][2], mask = (PetscAbs(vj[0] - x) < 100 * PETSC_SQRT_MACHINE_EPSILON && PetscAbs(vj[1] - y) < 100 * PETSC_SQRT_MACHINE_EPSILON) ? 0. : 1.;
6258a6f2e61SMark Adams               LandauTensor2D(vj, x, y, Ud, Uk, mask);
62652cdd6eaSMark #else
6277620afa1SMark Adams                 PetscReal U[3][3], z = d_z[ipidx], mask = (PetscAbs(vj[0]-x) < 100*PETSC_SQRT_MACHINE_EPSILON && PetscAbs(vj[1]-y) < 100*PETSC_SQRT_MACHINE_EPSILON && PetscAbs(vj[2]-z) < 100*PETSC_SQRT_MACHINE_EPSILON) ? 0. : 1.;
6288a6f2e61SMark Adams                 LandauTensor3D(vj, x, y, z, U, mask);
62952cdd6eaSMark #endif
6308a6f2e61SMark Adams               grid_r = 0;
6318a6f2e61SMark Adams               while (ipidx >= d_ip_offset[grid_r + 1]) grid_r++; // yuck search for grid
6328a6f2e61SMark Adams               f_off_r   = d_species_offset[grid_r];
6338a6f2e61SMark Adams               ipidx_g   = ipidx - d_ip_offset[grid_r];
6348a6f2e61SMark Adams               nip_loc_r = d_numCells[grid_r] * Nq;
6358fdabdddSMark Adams               loc_Nf_r  = d_species_offset[grid_r + 1] - d_species_offset[grid_r];
6368fdabdddSMark Adams               for (fieldA = 0; fieldA < loc_Nf_r; ++fieldA) {
6378fdabdddSMark Adams                 const PetscInt idx = d_ipf_offset[grid_r] + fieldA * nip_loc_r + ipidx_g;
6388fdabdddSMark Adams                 temp1[0] += d_fdf_k(b_id, 1, idx) * d_beta[fieldA + f_off_r] * d_invMass[fieldA + f_off_r];
6398fdabdddSMark Adams                 temp1[1] += d_fdf_k(b_id, 2, idx) * d_beta[fieldA + f_off_r] * d_invMass[fieldA + f_off_r];
64052cdd6eaSMark #if LANDAU_DIM == 3
6418fdabdddSMark Adams                 temp1[2] += d_fdf_k(b_id, 3, idx) * d_beta[fieldA + f_off_r] * d_invMass[fieldA + f_off_r];
64252cdd6eaSMark #endif
6438fdabdddSMark Adams                 temp2 += d_fdf_k(b_id, 0, idx) * d_beta[fieldA + f_off_r];
64452cdd6eaSMark               }
64552cdd6eaSMark               temp1[0] *= wi;
64652cdd6eaSMark               temp1[1] *= wi;
64752cdd6eaSMark #if LANDAU_DIM == 3
64852cdd6eaSMark               temp1[2] *= wi;
64952cdd6eaSMark #endif
65052cdd6eaSMark               temp2 *= wi;
65152cdd6eaSMark #if LANDAU_DIM == 2
65252cdd6eaSMark               for (d2 = 0; d2 < 2; d2++) {
653e0eea495SMark                 for (d3 = 0; d3 < 2; ++d3) {
654e0eea495SMark                   /* K = U * grad(f): g2=e: i,A */
65552cdd6eaSMark                   ggg.gg2[d2] += Uk[d2][d3] * temp1[d3];
656e0eea495SMark                   /* D = -U * (I \kron (fx)): g3=f: i,j,A */
65752cdd6eaSMark                   ggg.gg3[d2][d3] += Ud[d2][d3] * temp2;
658e0eea495SMark                 }
659e0eea495SMark               }
660e0eea495SMark #else
661e0eea495SMark                 for (d2 = 0; d2 < 3; ++d2) {
662e0eea495SMark                   for (d3 = 0; d3 < 3; ++d3) {
663e0eea495SMark                     /* K = U * grad(f): g2 = e: i,A */
66452cdd6eaSMark                     ggg.gg2[d2] += U[d2][d3]*temp1[d3];
665e0eea495SMark                     /* D = -U * (I \kron (fx)): g3 = f: i,j,A */
66652cdd6eaSMark                     ggg.gg3[d2][d3] += U[d2][d3]*temp2;
667e0eea495SMark                   }
668e0eea495SMark                 }
669e0eea495SMark #endif
6709371c9d4SSatish Balay             },
6719371c9d4SSatish Balay             Kokkos::Sum<landau_inner_red::TensorValueType>(gg_temp));
67252cdd6eaSMark           // add alpha and put in gg2/3
6738fdabdddSMark Adams           Kokkos::parallel_for(Kokkos::ThreadVectorRange(team, (int)loc_Nf), [&](const int &fieldA) {
67452cdd6eaSMark             PetscInt d2, d3;
67552cdd6eaSMark             for (d2 = 0; d2 < dim; d2++) {
6768a6f2e61SMark Adams               gg2(d2, fieldA, myQi) = gg_temp.gg2[d2] * d_alpha[fieldA + f_off];
677ad540459SPierre Jolivet               for (d3 = 0; d3 < dim; d3++) gg3(d2, d3, fieldA, myQi) = -gg_temp.gg3[d2][d3] * d_alpha[fieldA + f_off] * d_invMass[fieldA + f_off];
67852cdd6eaSMark             }
679e0eea495SMark           });
68052cdd6eaSMark           /* add electric field term once per IP */
6819371c9d4SSatish Balay           Kokkos::parallel_for(Kokkos::ThreadVectorRange(team, (int)loc_Nf), [&](const int &fieldA) { gg2(dim - 1, fieldA, myQi) += d_Eq_m[fieldA + f_off]; });
6828fdabdddSMark Adams           Kokkos::parallel_for(Kokkos::ThreadVectorRange(team, (int)loc_Nf), [=](const int &fieldA) {
683e0eea495SMark             int d, d2, d3, dp;
684e0eea495SMark             /* Jacobian transform - g2, g3 - per thread (2D) */
685e0eea495SMark             for (d = 0; d < dim; ++d) {
68652cdd6eaSMark               g2(d, fieldA, myQi) = 0;
687e0eea495SMark               for (d2 = 0; d2 < dim; ++d2) {
6888fdabdddSMark Adams                 g2(d, fieldA, myQi) += invJ[d * dim + d2] * gg2(d2, fieldA, myQi);
68952cdd6eaSMark                 g3(d, d2, fieldA, myQi) = 0;
690e0eea495SMark                 for (d3 = 0; d3 < dim; ++d3) {
691ad540459SPierre Jolivet                   for (dp = 0; dp < dim; ++dp) g3(d, d2, fieldA, myQi) += invJ[d * dim + d3] * gg3(d3, dp, fieldA, myQi) * invJ[d2 * dim + dp];
692e0eea495SMark                 }
69352cdd6eaSMark                 g3(d, d2, fieldA, myQi) *= wj;
694e0eea495SMark               }
69552cdd6eaSMark               g2(d, fieldA, myQi) *= wj;
696e0eea495SMark             }
697e0eea495SMark           });
69852cdd6eaSMark         }); // Nq
699e0eea495SMark         team.team_barrier();
7001eec90e4SMark Adams         { /* assemble */
7018fdabdddSMark Adams           for (PetscInt fieldA = 0; fieldA < loc_Nf; fieldA++) {
702930e68a5SMark Adams             /* assemble */
7031eec90e4SMark Adams             Kokkos::parallel_for(Kokkos::TeamThreadRange(team, 0, Nb), [=](int f) {
7041eec90e4SMark Adams               Kokkos::parallel_for(Kokkos::ThreadVectorRange(team, 0, Nb), [=](int g) {
7051eec90e4SMark Adams                 PetscScalar t = 0;
7061eec90e4SMark Adams                 for (int qj = 0; qj < Nq; qj++) { // look at others integration points
707e0eea495SMark                   const PetscReal *BJq = &d_BB[qj * Nb], *DIq = &d_DD[qj * Nb * dim];
7081eec90e4SMark Adams                   for (int d = 0; d < dim; ++d) {
7091eec90e4SMark Adams                     t += DIq[f * dim + d] * g2(d, fieldA, qj) * BJq[g];
710ad540459SPierre Jolivet                     for (int d2 = 0; d2 < dim; ++d2) t += DIq[f * dim + d] * g3(d, d2, fieldA, qj) * DIq[g * dim + d2];
711e0eea495SMark                   }
712930e68a5SMark Adams                 }
7138a6f2e61SMark Adams                 if (elem_mat_num_cells_max_grid) { // CPU assembly
714bfbbad94Smarkadams4 #ifdef LAND_SUPPORT_CPU_ASS
7151eec90e4SMark Adams                   const PetscInt fOff                     = (fieldA * Nb + f) * totDim + fieldA * Nb + g;
7168fdabdddSMark Adams                   d_elem_mats(b_id, grid, loc_elem, fOff) = t;
717bfbbad94Smarkadams4 #endif
71819be780dSMark Adams                 } else {
719cada7fc7SMark Adams                   landau_mat_assemble(d_mat, d_coo_vals, t, f, g, Nb, moffset, loc_elem, fieldA, maps[grid], d_coo_elem_offsets, d_coo_elem_fullNb, d_coo_elem_point_offsets, b_elem_idx, b_id * coo_sz_batch);
72019be780dSMark Adams                 }
7211eec90e4SMark Adams               });
7221eec90e4SMark Adams             });
7231eec90e4SMark Adams           }
724a587d139SMark         }
72519be780dSMark Adams       } // scope with 'grid'
72681451871SMark Adams     };
7279566063dSJacob Faibussowitsch     PetscCall(PetscLogEventBegin(events[4], 0, 0, 0, 0));
7289566063dSJacob Faibussowitsch     PetscCall(PetscLogGpuTimeBegin());
729d9008a5dSMark Adams     PetscCall(PetscInfo(plex[0], "Jacobian shared memory size: %d bytes in level %s (max shared=%d), num cells total=%d, team size=%d, vector size=%d, #face=%d, Nf_max=%d\n", jac_scr_bytes, jac_shared_level == 0 ? "local" : "global", maximum_shared_mem_size, num_cells_batch * batch_sz, team_size, vector_size, nfaces, Nf_max));
730d9008a5dSMark Adams     Kokkos::parallel_for("Jacobian", Kokkos::TeamPolicy<>(num_cells_batch * batch_sz, team_size, vector_size).set_scratch_size(jac_shared_level, Kokkos::PerTeam(jac_scr_bytes)), jac_lambda); // Kokkos::LaunchBounds<512,2>
731d9008a5dSMark Adams     Kokkos::fence();
7329566063dSJacob Faibussowitsch     PetscCall(PetscLogGpuTimeEnd());
7339566063dSJacob Faibussowitsch     PetscCall(PetscLogEventEnd(events[4], 0, 0, 0, 0));
73419be780dSMark Adams     if (d_vertex_f_k) delete d_vertex_f_k;
735dbabbaf5SMark Adams   } else { // mass
7369566063dSJacob Faibussowitsch     PetscCall(PetscLogEventBegin(events[16], 0, 0, 0, 0));
7379566063dSJacob Faibussowitsch     PetscCall(PetscLogGpuTimeBegin());
738dbabbaf5SMark Adams     PetscCall(PetscInfo(plex[0], "Mass team size=%d vector size=%d #face=%d Nb=%" PetscInt_FMT ", %s assembly\n", team_size, vector_size, nfaces, Nb, d_coo_vals ? "COO" : "CSR"));
7399371c9d4SSatish Balay     Kokkos::parallel_for(
7409371c9d4SSatish Balay       "Mass", Kokkos::TeamPolicy<>(num_cells_batch * batch_sz, team_size, vector_size), KOKKOS_LAMBDA(const team_member team) { // Kokkos::LaunchBounds<512,4>
7418fdabdddSMark Adams         const PetscInt b_Nelem = d_elem_offset[num_grids], b_elem_idx = team.league_rank() % b_Nelem, b_id = team.league_rank() / b_Nelem;
7428a6f2e61SMark Adams         // find my grid
7438fdabdddSMark Adams         PetscInt       grid = 0;
7448fdabdddSMark Adams         while (b_elem_idx >= d_elem_offset[grid + 1]) grid++;
7458a6f2e61SMark Adams         {
746bfbbad94Smarkadams4           const PetscInt loc_Nf = d_species_offset[grid + 1] - d_species_offset[grid], loc_elem = b_elem_idx - d_elem_offset[grid], jpidx_0 = d_ip_offset[grid] + loc_elem * Nq;
747bfbbad94Smarkadams4 #ifdef LAND_SUPPORT_CPU_ASS
748bfbbad94Smarkadams4           const PetscInt totDim = loc_Nf * Nq;
749bfbbad94Smarkadams4 #endif
7508fdabdddSMark Adams           const PetscInt moffset = LAND_MOFFSET(b_id, grid, batch_sz, num_grids, d_mat_offset);
7518fdabdddSMark Adams           for (int fieldA = 0; fieldA < loc_Nf; fieldA++) {
7521eec90e4SMark Adams             /* assemble */
7531eec90e4SMark Adams             Kokkos::parallel_for(Kokkos::TeamThreadRange(team, 0, Nb), [=](int f) {
7541eec90e4SMark Adams               Kokkos::parallel_for(Kokkos::ThreadVectorRange(team, 0, Nb), [=](int g) {
7551eec90e4SMark Adams                 PetscScalar t = 0;
7561eec90e4SMark Adams                 for (int qj = 0; qj < Nq; qj++) { // look at others integration points
7571eec90e4SMark Adams                   const PetscReal *BJq       = &d_BB[qj * Nb];
7588fdabdddSMark Adams                   const PetscInt   jpidx_glb = jpidx_0 + qj;
7598a6f2e61SMark Adams                   if (dim == 2) {
7608fdabdddSMark Adams                     t += BJq[f] * d_w_k(jpidx_glb) * shift * BJq[g] * 2. * PETSC_PI;
7618a6f2e61SMark Adams                   } else {
7628fdabdddSMark Adams                     t += BJq[f] * d_w_k(jpidx_glb) * shift * BJq[g];
7631eec90e4SMark Adams                   }
7648a6f2e61SMark Adams                 }
7658a6f2e61SMark Adams                 if (elem_mat_num_cells_max_grid) {
766bfbbad94Smarkadams4 #ifdef LAND_SUPPORT_CPU_ASS
7671eec90e4SMark Adams                   const PetscInt fOff                     = (fieldA * Nb + f) * totDim + fieldA * Nb + g;
7688fdabdddSMark Adams                   d_elem_mats(b_id, grid, loc_elem, fOff) = t;
769bfbbad94Smarkadams4 #endif
770ad4b5651SMark Adams                 } else {
771cada7fc7SMark Adams                   landau_mat_assemble(d_mat, d_coo_vals, t, f, g, Nb, moffset, loc_elem, fieldA, maps[grid], d_coo_elem_offsets, d_coo_elem_fullNb, d_coo_elem_point_offsets, b_elem_idx, b_id * coo_sz_batch);
772ad4b5651SMark Adams                 }
773e0eea495SMark               });
774e0eea495SMark             });
77513241b68SMark Adams           } // field
77613241b68SMark Adams         }   // grid
7771eec90e4SMark Adams       });
778d9008a5dSMark Adams     Kokkos::fence();
7799566063dSJacob Faibussowitsch     PetscCall(PetscLogGpuTimeEnd());
7809566063dSJacob Faibussowitsch     PetscCall(PetscLogEventEnd(events[16], 0, 0, 0, 0));
7811eec90e4SMark Adams   }
782bfc784b7SMark Adams   if (d_coo_vals) {
7839566063dSJacob Faibussowitsch     PetscCall(MatSetValuesCOO(JacP, d_coo_vals, ADD_VALUES));
784bfbbad94Smarkadams4 #ifndef LAND_SUPPORT_CPU_ASS
785bfbbad94Smarkadams4     Kokkos::fence(); // for timers
786bfbbad94Smarkadams4 #endif
787bfc784b7SMark Adams   } else if (elem_mat_num_cells_max_grid) { // CPU assembly
788bfbbad94Smarkadams4 #ifdef LAND_SUPPORT_CPU_ASS
7898fdabdddSMark Adams     Kokkos::View<PetscScalar ****, Kokkos::LayoutRight>::HostMirror h_elem_mats = Kokkos::create_mirror_view(d_elem_mats);
790e0eea495SMark     Kokkos::deep_copy(h_elem_mats, d_elem_mats);
791d618d24fSMark Adams     PetscCheck(!container, PETSC_COMM_SELF, PETSC_ERR_PLIB, "?????");
7928fdabdddSMark Adams     for (PetscInt b_id = 0; b_id < batch_sz; b_id++) { // OpenMP (once)
7938a6f2e61SMark Adams       for (PetscInt grid = 0; grid < num_grids; grid++) {
7948a6f2e61SMark Adams         PetscSection       section, globalSection;
7958a6f2e61SMark Adams         PetscInt           cStart, cEnd;
7968fdabdddSMark Adams         Mat                B       = subJ[LAND_PACK_IDX(b_id, grid)];
7978fdabdddSMark Adams         PetscInt           moffset = LAND_MOFFSET(b_id, grid, batch_sz, num_grids, a_mat_offset), nloc, nzl, colbuf[1024], row;
7988fdabdddSMark Adams         const PetscInt    *cols;
7998fdabdddSMark Adams         const PetscScalar *vals;
8009566063dSJacob Faibussowitsch         PetscCall(PetscLogEventBegin(events[5], 0, 0, 0, 0));
8019566063dSJacob Faibussowitsch         PetscCall(DMPlexGetHeightStratum(plex[grid], 0, &cStart, &cEnd));
8029566063dSJacob Faibussowitsch         PetscCall(DMGetLocalSection(plex[grid], &section));
8039566063dSJacob Faibussowitsch         PetscCall(DMGetGlobalSection(plex[grid], &globalSection));
8049566063dSJacob Faibussowitsch         PetscCall(PetscLogEventEnd(events[5], 0, 0, 0, 0));
8059566063dSJacob Faibussowitsch         PetscCall(PetscLogEventBegin(events[6], 0, 0, 0, 0));
8068a6f2e61SMark Adams         for (PetscInt ej = cStart; ej < cEnd; ++ej) {
8078fdabdddSMark Adams           const PetscScalar *elMat = &h_elem_mats(b_id, grid, ej - cStart, 0);
8089566063dSJacob Faibussowitsch           PetscCall(DMPlexMatSetClosure(plex[grid], section, globalSection, B, ej, elMat, ADD_VALUES));
8098a6f2e61SMark Adams           if (grid == 0 && ej == -1) {
8108fdabdddSMark Adams             const PetscInt loc_Nf = a_species_offset[grid + 1] - a_species_offset[grid], totDim = loc_Nf * Nq;
811e0eea495SMark             int            d, f;
8128a6f2e61SMark Adams             PetscPrintf(PETSC_COMM_SELF, "Kokkos Element matrix %d/%d\n", 1, (int)a_numCells[grid]);
813e0eea495SMark             for (d = 0; d < totDim; ++d) {
81452cdd6eaSMark               for (f = 0; f < totDim; ++f) PetscPrintf(PETSC_COMM_SELF, " %12.5e", PetscRealPart(elMat[d * totDim + f]));
81552cdd6eaSMark               PetscPrintf(PETSC_COMM_SELF, "\n");
816e0eea495SMark             }
817e8d2b73aSMark Adams             exit(14);
818e0eea495SMark           }
819e0eea495SMark         }
8208fdabdddSMark Adams         // move nest matrix to global JacP
8219566063dSJacob Faibussowitsch         PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
8229566063dSJacob Faibussowitsch         PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
8239566063dSJacob Faibussowitsch         PetscCall(MatGetSize(B, &nloc, NULL));
8248a6f2e61SMark Adams         for (int i = 0; i < nloc; i++) {
8259566063dSJacob Faibussowitsch           PetscCall(MatGetRow(B, i, &nzl, &cols, &vals));
82663a3b9bcSJacob Faibussowitsch           PetscCheck(nzl <= 1024, PetscObjectComm((PetscObject)B), PETSC_ERR_PLIB, "Row too big: %" PetscInt_FMT, nzl);
8278a6f2e61SMark Adams           for (int j = 0; j < nzl; j++) colbuf[j] = cols[j] + moffset;
8288a6f2e61SMark Adams           row = i + moffset;
8299566063dSJacob Faibussowitsch           PetscCall(MatSetValues(JacP, 1, &row, nzl, colbuf, vals, ADD_VALUES));
8309566063dSJacob Faibussowitsch           PetscCall(MatRestoreRow(B, i, &nzl, &cols, &vals));
8318a6f2e61SMark Adams         }
8329566063dSJacob Faibussowitsch         PetscCall(MatDestroy(&subJ[LAND_PACK_IDX(b_id, grid)]));
8339566063dSJacob Faibussowitsch         PetscCall(PetscLogEventEnd(events[6], 0, 0, 0, 0));
8348a6f2e61SMark Adams       } // grids
835a587d139SMark     }
836bfbbad94Smarkadams4 #else
837bfbbad94Smarkadams4     SETERRQ(PETSC_COMM_SELF, PETSC_ERR_PLIB, "CPU assembly not supported");
838bfbbad94Smarkadams4 #endif
8398fdabdddSMark Adams   }
840e0eea495SMark   PetscFunctionReturn(0);
841e0eea495SMark }
842e0eea495SMark } // extern "C"
843