xref: /petsc/src/ts/utils/dmplexlandau/kokkos/landau.kokkos.cxx (revision a31f605328b198f2b4ecb915de50a3bc471263f4)
1e0eea495SMark /*
2e0eea495SMark   Implements the Kokkos kernel
3e0eea495SMark */
4e0eea495SMark #include <petscconf.h>
511d22bbfSJunchao Zhang #include <petscvec_kokkos.hpp>
6e0eea495SMark #include <petsc/private/dmpleximpl.h>   /*I   "petscdmplex.h"   I*/
7e0eea495SMark #include <petsclandau.h>
8e0eea495SMark #include <petscts.h>
9a587d139SMark 
10e0eea495SMark #include <Kokkos_Core.hpp>
11e0eea495SMark #include <cstdio>
12e0eea495SMark typedef Kokkos::TeamPolicy<>::member_type team_member;
13e0eea495SMark #include "../land_tensors.h"
14a587d139SMark #include <petscaijdevice.h>
15e0eea495SMark 
16e0eea495SMark namespace landau_inner_red {  // namespace helps with name resolution in reduction identity
1752cdd6eaSMark   template< class ScalarType >
18e0eea495SMark   struct array_type {
1952cdd6eaSMark     ScalarType gg2[LANDAU_DIM];
2052cdd6eaSMark     ScalarType gg3[LANDAU_DIM][LANDAU_DIM];
21e0eea495SMark 
22e0eea495SMark     KOKKOS_INLINE_FUNCTION   // Default constructor - Initialize to 0's
23e0eea495SMark     array_type() {
24e0eea495SMark       for (int j = 0; j < LANDAU_DIM; j++) {
2552cdd6eaSMark         gg2[j] = 0;
26e0eea495SMark         for (int k = 0; k < LANDAU_DIM; k++) {
2752cdd6eaSMark           gg3[j][k] = 0;
28e0eea495SMark         }
29e0eea495SMark       }
30e0eea495SMark     }
31e0eea495SMark     KOKKOS_INLINE_FUNCTION   // Copy Constructor
32e0eea495SMark     array_type(const array_type & rhs) {
33e0eea495SMark       for (int j = 0; j < LANDAU_DIM; j++) {
3452cdd6eaSMark         gg2[j] = rhs.gg2[j];
35e0eea495SMark         for (int k = 0; k < LANDAU_DIM; k++) {
3652cdd6eaSMark           gg3[j][k] = rhs.gg3[j][k];
37e0eea495SMark         }
38e0eea495SMark       }
39e0eea495SMark     }
40e0eea495SMark     KOKKOS_INLINE_FUNCTION   // add operator
4170a7d78aSStefano Zampini     array_type& operator += (const array_type& src)
4270a7d78aSStefano Zampini     {
43e0eea495SMark       for (int j = 0; j < LANDAU_DIM; j++) {
4452cdd6eaSMark         gg2[j] += src.gg2[j];
45e0eea495SMark         for (int k = 0; k < LANDAU_DIM; k++) {
4652cdd6eaSMark           gg3[j][k] += src.gg3[j][k];
47e0eea495SMark         }
48e0eea495SMark       }
49e0eea495SMark       return *this;
50e0eea495SMark     }
51e0eea495SMark     KOKKOS_INLINE_FUNCTION   // volatile add operator
5270a7d78aSStefano Zampini     void operator += (const volatile array_type& src) volatile
5370a7d78aSStefano Zampini     {
54e0eea495SMark       for (int j = 0; j < LANDAU_DIM; j++) {
5552cdd6eaSMark         gg2[j] += src.gg2[j];
56e0eea495SMark         for (int k = 0; k < LANDAU_DIM; k++) {
5752cdd6eaSMark           gg3[j][k] += src.gg3[j][k];
58e0eea495SMark         }
59e0eea495SMark       }
60e0eea495SMark     }
61e0eea495SMark   };
6252cdd6eaSMark   typedef array_type<PetscReal> TensorValueType;  // used to simplify code below
63e0eea495SMark }
64e0eea495SMark 
65e0eea495SMark namespace Kokkos { //reduction identity must be defined in Kokkos namespace
66e0eea495SMark   template<>
6752cdd6eaSMark   struct reduction_identity< landau_inner_red::TensorValueType > {
6852cdd6eaSMark     KOKKOS_FORCEINLINE_FUNCTION static landau_inner_red::TensorValueType sum() {
6952cdd6eaSMark       return landau_inner_red::TensorValueType();
70e0eea495SMark     }
71e0eea495SMark   };
72e0eea495SMark }
73e0eea495SMark 
74e0eea495SMark extern "C"  {
758a6f2e61SMark Adams PetscErrorCode LandauKokkosCreateMatMaps(P4estVertexMaps maps[], pointInterpolationP4est (*pointMaps)[LANDAU_MAX_Q_FACE], PetscInt Nf[], PetscInt Nq, PetscInt grid)
76a587d139SMark {
77a587d139SMark   P4estVertexMaps   h_maps;  /* host container */
788a6f2e61SMark Adams   const Kokkos::View<pointInterpolationP4est*[LANDAU_MAX_Q_FACE], Kokkos::LayoutRight, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> >    h_points ((pointInterpolationP4est*)pointMaps, maps[grid].num_reduced);
798a6f2e61SMark Adams   const Kokkos::View< LandauIdx*[LANDAU_MAX_SPECIES][LANDAU_MAX_NQ], Kokkos::LayoutRight, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_gidx ((LandauIdx*)maps[grid].gIdx, maps[grid].num_elements);
808a6f2e61SMark Adams   Kokkos::View<pointInterpolationP4est*[LANDAU_MAX_Q_FACE], Kokkos::LayoutRight>   *d_points = new Kokkos::View<pointInterpolationP4est*[LANDAU_MAX_Q_FACE], Kokkos::LayoutRight>("points", maps[grid].num_reduced);
818a6f2e61SMark Adams   Kokkos::View<LandauIdx*[LANDAU_MAX_SPECIES][LANDAU_MAX_NQ], Kokkos::LayoutRight> *d_gidx = new Kokkos::View<LandauIdx*[LANDAU_MAX_SPECIES][LANDAU_MAX_NQ], Kokkos::LayoutRight>("gIdx", maps[grid].num_elements);
82a587d139SMark 
83a587d139SMark   PetscFunctionBegin;
84a587d139SMark   Kokkos::deep_copy (*d_gidx, h_gidx);
85a587d139SMark   Kokkos::deep_copy (*d_points, h_points);
868a6f2e61SMark Adams   h_maps.num_elements = maps[grid].num_elements;
878a6f2e61SMark Adams   h_maps.num_face = maps[grid].num_face;
888a6f2e61SMark Adams   h_maps.num_reduced = maps[grid].num_reduced;
898a6f2e61SMark Adams   h_maps.deviceType = maps[grid].deviceType;
908a6f2e61SMark Adams   h_maps.numgrids = maps[grid].numgrids;
918a6f2e61SMark Adams   h_maps.Nf = Nf[grid];
92a587d139SMark   h_maps.c_maps = (pointInterpolationP4est (*)[LANDAU_MAX_Q_FACE]) d_points->data();
938a6f2e61SMark Adams   maps[grid].vp1 = (void*)d_points;
94a587d139SMark   h_maps.gIdx = (LandauIdx (*)[LANDAU_MAX_SPECIES][LANDAU_MAX_NQ]) d_gidx->data();
958a6f2e61SMark Adams   maps[grid].vp2 = (void*)d_gidx;
96a587d139SMark   {
97a587d139SMark     Kokkos::View<P4estVertexMaps, Kokkos::HostSpace> h_maps_k(&h_maps);
9811d22bbfSJunchao Zhang     Kokkos::View<P4estVertexMaps>                    *d_maps_k = new Kokkos::View<P4estVertexMaps>(Kokkos::create_mirror(Kokkos::DefaultExecutionSpace::memory_space(),h_maps_k));
99a587d139SMark     Kokkos::deep_copy (*d_maps_k, h_maps_k);
1008a6f2e61SMark Adams     maps[grid].d_self = d_maps_k->data();
1018a6f2e61SMark Adams     maps[grid].vp3 = (void*)d_maps_k;
102a587d139SMark   }
103a587d139SMark   PetscFunctionReturn(0);
104a587d139SMark }
1058a6f2e61SMark Adams PetscErrorCode LandauKokkosDestroyMatMaps(P4estVertexMaps maps[], PetscInt num_grids)
106a587d139SMark {
107362febeeSStefano Zampini   PetscFunctionBegin;
1088a6f2e61SMark Adams   for (PetscInt grid=0;grid<num_grids;grid++) {
1098a6f2e61SMark Adams     auto a = static_cast<Kokkos::View<pointInterpolationP4est*[LANDAU_MAX_Q_FACE], Kokkos::LayoutRight>*>(maps[grid].vp1);
1108a6f2e61SMark Adams     auto b = static_cast<Kokkos::View<LandauIdx*[LANDAU_MAX_SPECIES][LANDAU_MAX_NQ], Kokkos::LayoutRight>*>(maps[grid].vp2);
1118a6f2e61SMark Adams     auto c = static_cast<Kokkos::View<P4estVertexMaps*>*>(maps[grid].vp3);
112a587d139SMark     delete a;  delete b;  delete c;
1138a6f2e61SMark Adams   }
114a587d139SMark   PetscFunctionReturn(0);
115a587d139SMark }
116a587d139SMark 
1178fdabdddSMark Adams PetscErrorCode LandauKokkosStaticDataSet(DM plex, const PetscInt Nq, const PetscInt batch_sz, const PetscInt num_grids,
1188fdabdddSMark Adams                                          PetscInt a_numCells[], PetscInt a_species_offset[], PetscInt a_mat_offset[],
1198a6f2e61SMark Adams                                          PetscReal a_nu_alpha[], PetscReal a_nu_beta[], PetscReal a_invMass[], PetscReal a_invJ[],
1208a6f2e61SMark Adams                                          PetscReal a_x[], PetscReal a_y[], PetscReal a_z[], PetscReal a_w[], LandauStaticData *SData_d)
121e0eea495SMark {
122e0eea495SMark   PetscReal       *BB,*DD;
123e8d2b73aSMark Adams   PetscTabulation *Tf;
1248a6f2e61SMark Adams   PetscInt        dim;
1258a6f2e61SMark Adams   PetscInt        Nb=Nq,ip_offset[LANDAU_MAX_GRIDS+1],ipf_offset[LANDAU_MAX_GRIDS+1],elem_offset[LANDAU_MAX_GRIDS+1],nip,IPf_sz,Nftot;
126e8d2b73aSMark Adams   PetscDS         prob;
127e0eea495SMark 
128e0eea495SMark   PetscFunctionBegin;
1299566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(plex, &dim));
1309566063dSJacob Faibussowitsch   PetscCall(DMGetDS(plex, &prob));
13163a3b9bcSJacob Faibussowitsch   PetscCheck(LANDAU_DIM == dim,PETSC_COMM_WORLD, PETSC_ERR_PLIB, "dim %" PetscInt_FMT " != LANDAU_DIM %d",dim,LANDAU_DIM);
1329566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTabulation(prob, &Tf));
133e8d2b73aSMark Adams   BB   = Tf[0]->T[0]; DD = Tf[0]->T[1];
1348a6f2e61SMark Adams   ip_offset[0] = ipf_offset[0] = elem_offset[0] = 0;
1358a6f2e61SMark Adams   nip = 0;
1368a6f2e61SMark Adams   IPf_sz = 0;
1378a6f2e61SMark Adams   for (PetscInt grid=0 ; grid<num_grids ; grid++) {
1388a6f2e61SMark Adams     PetscInt nfloc = a_species_offset[grid+1] - a_species_offset[grid];
1398a6f2e61SMark Adams     elem_offset[grid+1] = elem_offset[grid] + a_numCells[grid];
1408a6f2e61SMark Adams     nip += a_numCells[grid]*Nq;
1418a6f2e61SMark Adams     ip_offset[grid+1] = nip;
1428a6f2e61SMark Adams     IPf_sz += Nq*nfloc*a_numCells[grid];
1438a6f2e61SMark Adams     ipf_offset[grid+1] = IPf_sz;
1448a6f2e61SMark Adams   }
1458a6f2e61SMark Adams   Nftot = a_species_offset[num_grids];
1469566063dSJacob Faibussowitsch   PetscCall(PetscKokkosInitializeCheck());
147e8d2b73aSMark Adams   {
1488a6f2e61SMark Adams     const Kokkos::View<PetscReal*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_alpha (a_nu_alpha, Nftot);
1498a6f2e61SMark Adams     auto alpha = new Kokkos::View<PetscReal*, Kokkos::LayoutLeft> ("alpha", Nftot);
150e8d2b73aSMark Adams     SData_d->alpha = static_cast<void*>(alpha);
1518a6f2e61SMark Adams     const Kokkos::View<PetscReal*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_beta (a_nu_beta, Nftot);
1528a6f2e61SMark Adams     auto beta = new Kokkos::View<PetscReal*, Kokkos::LayoutLeft> ("beta", Nftot);
153e8d2b73aSMark Adams     SData_d->beta = static_cast<void*>(beta);
1548a6f2e61SMark Adams     const Kokkos::View<PetscReal*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_invMass (a_invMass,Nftot);
1558a6f2e61SMark Adams     auto invMass = new Kokkos::View<PetscReal*, Kokkos::LayoutLeft> ("invMass", Nftot);
156e8d2b73aSMark Adams     SData_d->invMass = static_cast<void*>(invMass);
157e8d2b73aSMark Adams     const Kokkos::View<PetscReal*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_BB (BB,Nq*Nb);
158e8d2b73aSMark Adams     auto B = new Kokkos::View<PetscReal*, Kokkos::LayoutLeft> ("B", Nq*Nb);
159e8d2b73aSMark Adams     SData_d->B = static_cast<void*>(B);
160e8d2b73aSMark Adams     const Kokkos::View<PetscReal*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_DD (DD,Nq*Nb*dim);
161e8d2b73aSMark Adams     auto D = new Kokkos::View<PetscReal*, Kokkos::LayoutLeft> ("D", Nq*Nb*dim);
162e8d2b73aSMark Adams     SData_d->D = static_cast<void*>(D);
163e8d2b73aSMark Adams     const Kokkos::View<PetscReal*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_invJ (a_invJ, nip*dim*dim);
164e8d2b73aSMark Adams     auto invJ = new Kokkos::View<PetscReal*, Kokkos::LayoutLeft> ("invJ", nip*dim*dim);
165e8d2b73aSMark Adams     SData_d->invJ = static_cast<void*>(invJ);
166e8d2b73aSMark Adams     const Kokkos::View<PetscReal*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_x (a_x, nip);
167e8d2b73aSMark Adams     auto x = new Kokkos::View<PetscReal*, Kokkos::LayoutLeft> ("x", nip);
168e8d2b73aSMark Adams     SData_d->x = static_cast<void*>(x);
169e8d2b73aSMark Adams     const Kokkos::View<PetscReal*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_y (a_y, nip);
170e8d2b73aSMark Adams     auto y = new Kokkos::View<PetscReal*, Kokkos::LayoutLeft> ("y", nip);
171e8d2b73aSMark Adams     SData_d->y = static_cast<void*>(y);
172e8d2b73aSMark Adams     const Kokkos::View<PetscReal*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_w (a_w, nip);
173e8d2b73aSMark Adams     auto w = new Kokkos::View<PetscReal*, Kokkos::LayoutLeft> ("w", nip);
174e8d2b73aSMark Adams     SData_d->w = static_cast<void*>(w);
175e8d2b73aSMark Adams 
176e8d2b73aSMark Adams     Kokkos::deep_copy (*alpha, h_alpha);
177e8d2b73aSMark Adams     Kokkos::deep_copy (*beta, h_beta);
178e8d2b73aSMark Adams     Kokkos::deep_copy (*invMass, h_invMass);
179e8d2b73aSMark Adams     Kokkos::deep_copy (*B, h_BB);
180e8d2b73aSMark Adams     Kokkos::deep_copy (*D, h_DD);
181e8d2b73aSMark Adams     Kokkos::deep_copy (*invJ, h_invJ);
182e8d2b73aSMark Adams     Kokkos::deep_copy (*x, h_x);
183e8d2b73aSMark Adams     Kokkos::deep_copy (*y, h_y);
184e8d2b73aSMark Adams     Kokkos::deep_copy (*w, h_w);
185e8d2b73aSMark Adams 
1868a6f2e61SMark Adams     if (dim==3) {
187984ed092SMark Adams       const Kokkos::View<PetscReal*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_z (a_z , nip);
1888a6f2e61SMark Adams       auto z = new Kokkos::View<PetscReal*, Kokkos::LayoutLeft> ("z", nip);
1898a6f2e61SMark Adams       SData_d->z = static_cast<void*>(z);
1908a6f2e61SMark Adams       Kokkos::deep_copy (*z, h_z);
1918a6f2e61SMark Adams     } else SData_d->z = NULL;
1928a6f2e61SMark Adams 
1938a6f2e61SMark Adams     //
1948a6f2e61SMark Adams     const Kokkos::View<PetscInt*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_NCells (a_numCells, num_grids);
1958a6f2e61SMark Adams     auto nc = new Kokkos::View<PetscInt*, Kokkos::LayoutLeft> ("NCells",num_grids);
1968a6f2e61SMark Adams     SData_d->NCells = static_cast<void*>(nc);
1978a6f2e61SMark Adams     Kokkos::deep_copy (*nc, h_NCells);
1988a6f2e61SMark Adams 
1998a6f2e61SMark Adams     const Kokkos::View<PetscInt*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_species_offset (a_species_offset, num_grids+1);
2008a6f2e61SMark Adams     auto soff = new Kokkos::View<PetscInt*, Kokkos::LayoutLeft> ("species_offset",num_grids+1);
2018a6f2e61SMark Adams     SData_d->species_offset = static_cast<void*>(soff);
2028a6f2e61SMark Adams     Kokkos::deep_copy (*soff, h_species_offset);
2038a6f2e61SMark Adams 
2048a6f2e61SMark Adams     const Kokkos::View<PetscInt*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_mat_offset (a_mat_offset, num_grids+1);
2058a6f2e61SMark Adams     auto moff = new Kokkos::View<PetscInt*, Kokkos::LayoutLeft> ("mat_offset",num_grids+1);
2068a6f2e61SMark Adams     SData_d->mat_offset = static_cast<void*>(moff);
2078a6f2e61SMark Adams     Kokkos::deep_copy (*moff, h_mat_offset);
2088a6f2e61SMark Adams 
2098a6f2e61SMark Adams     const Kokkos::View<PetscInt*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_ip_offset (ip_offset, num_grids+1);
2108a6f2e61SMark Adams     auto ipoff = new Kokkos::View<PetscInt*, Kokkos::LayoutLeft> ("ip_offset",num_grids+1);
2118a6f2e61SMark Adams     SData_d->ip_offset = static_cast<void*>(ipoff);
2128a6f2e61SMark Adams     Kokkos::deep_copy (*ipoff,  h_ip_offset);
2138a6f2e61SMark Adams 
2148a6f2e61SMark Adams     const Kokkos::View<PetscInt*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_elem_offset (elem_offset, num_grids+1);
2158a6f2e61SMark Adams     auto eoff = new Kokkos::View<PetscInt*, Kokkos::LayoutLeft> ("elem_offset",num_grids+1);
2168a6f2e61SMark Adams     SData_d->elem_offset = static_cast<void*>(eoff);
2178a6f2e61SMark Adams     Kokkos::deep_copy (*eoff,  h_elem_offset);
2188a6f2e61SMark Adams 
2198a6f2e61SMark Adams     const Kokkos::View<PetscInt*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_ipf_offset (ipf_offset, num_grids+1);
2208a6f2e61SMark Adams     auto ipfoff = new Kokkos::View<PetscInt*, Kokkos::LayoutLeft> ("ipf_offset",num_grids+1);
2218a6f2e61SMark Adams     SData_d->ipf_offset = static_cast<void*>(ipfoff);
2228a6f2e61SMark Adams     Kokkos::deep_copy (*ipfoff,  h_ipf_offset);
2238a6f2e61SMark Adams #if defined(LANDAU_LAYOUT_LEFT) // preallocate dynamic data, no copy
2248fdabdddSMark Adams     auto ipfdf_data =  new Kokkos::View<PetscReal***, Kokkos::LayoutLeft > ("fdf", batch_sz, dim+1, IPf_sz);
2258a6f2e61SMark Adams #else
2268fdabdddSMark Adams     auto ipfdf_data =  new Kokkos::View<PetscReal***, Kokkos::LayoutRight > ("fdf",batch_sz,  dim+1, IPf_sz);
2278a6f2e61SMark Adams #endif
2288a6f2e61SMark Adams     SData_d->ipfdf_data = static_cast<void*>(ipfdf_data);
2298fdabdddSMark Adams     auto Eq_m = new Kokkos::View<PetscReal*, Kokkos::LayoutLeft> ("Eq_m",Nftot); // allocate but do not set, same for whole batch
230e8d2b73aSMark Adams     SData_d->Eq_m = static_cast<void*>(Eq_m);
231cada7fc7SMark Adams     const Kokkos::View<LandauIdx*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_coo_elem_offsets ((LandauIdx*)SData_d->coo_elem_offsets, SData_d->coo_n_cellsTot+1);
232cada7fc7SMark Adams     auto coo_elem_offsets = new Kokkos::View<LandauIdx*, Kokkos::LayoutLeft> ("coo_elem_offsets",SData_d->coo_n_cellsTot+1);
233cada7fc7SMark Adams     const Kokkos::View<LandauIdx*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_coo_elem_fullNb ((LandauIdx*)SData_d->coo_elem_fullNb, SData_d->coo_n_cellsTot);
234cada7fc7SMark Adams     auto coo_elem_fullNb = new Kokkos::View<LandauIdx*, Kokkos::LayoutLeft> ("coo_elem_offsets",SData_d->coo_n_cellsTot);
235cada7fc7SMark Adams     const Kokkos::View<LandauIdx*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_coo_elem_point_offsets ((LandauIdx*)SData_d->coo_elem_point_offsets, SData_d->coo_n_cellsTot*(LANDAU_MAX_NQ+1));
236cada7fc7SMark Adams     auto coo_elem_point_offsets = new Kokkos::View<LandauIdx*, Kokkos::LayoutLeft> ("coo_elem_point_offsets",SData_d->coo_n_cellsTot*(LANDAU_MAX_NQ+1));
237bfc784b7SMark Adams     // assign & copy
238bfc784b7SMark Adams     Kokkos::deep_copy (*coo_elem_offsets,  h_coo_elem_offsets);
239bfc784b7SMark Adams     Kokkos::deep_copy (*coo_elem_fullNb,  h_coo_elem_fullNb);
240bfc784b7SMark Adams     Kokkos::deep_copy (*coo_elem_point_offsets,  h_coo_elem_point_offsets);
241bfc784b7SMark Adams     // need to free this now and use pointer space
2429566063dSJacob Faibussowitsch     PetscCall(PetscFree3(SData_d->coo_elem_offsets,SData_d->coo_elem_fullNb,SData_d->coo_elem_point_offsets));
243cada7fc7SMark Adams     SData_d->coo_elem_offsets       = static_cast<void*>(coo_elem_offsets);
244cada7fc7SMark Adams     SData_d->coo_elem_fullNb        = static_cast<void*>(coo_elem_fullNb);
245cada7fc7SMark Adams     SData_d->coo_elem_point_offsets = static_cast<void*>(coo_elem_point_offsets);
246*a31f6053SMark Adams     auto coo_vals = new Kokkos::View<PetscScalar*, Kokkos::LayoutRight, Kokkos::DefaultExecutionSpace> ("coo_vals", SData_d->coo_size);
247*a31f6053SMark Adams     SData_d->coo_vals = static_cast<void*>(coo_vals);
248e8d2b73aSMark Adams   }
2498a6f2e61SMark Adams   SData_d->maps = NULL; // not used
250e8d2b73aSMark Adams   PetscFunctionReturn(0);
251e8d2b73aSMark Adams }
252e8d2b73aSMark Adams 
2538a6f2e61SMark Adams PetscErrorCode LandauKokkosStaticDataClear(LandauStaticData *SData_d)
254e8d2b73aSMark Adams {
255e8d2b73aSMark Adams   PetscFunctionBegin;
256e8d2b73aSMark Adams   if (SData_d->alpha) {
257e8d2b73aSMark Adams     auto alpha = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->alpha);
258e8d2b73aSMark Adams     delete alpha;
2598a6f2e61SMark Adams     SData_d->alpha = NULL;
260e8d2b73aSMark Adams     auto beta = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->beta);
261e8d2b73aSMark Adams     delete beta;
262e8d2b73aSMark Adams     auto invMass = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->invMass);
263e8d2b73aSMark Adams     delete invMass;
264e8d2b73aSMark Adams     auto B = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->B);
265e8d2b73aSMark Adams     delete B;
266e8d2b73aSMark Adams     auto D = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->D);
267e8d2b73aSMark Adams     delete D;
268e8d2b73aSMark Adams     auto invJ = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->invJ);
269e8d2b73aSMark Adams     delete invJ;
270e8d2b73aSMark Adams     auto x = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->x);
271e8d2b73aSMark Adams     delete x;
272e8d2b73aSMark Adams     auto y = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->y);
273e8d2b73aSMark Adams     delete y;
2748a6f2e61SMark Adams     if (SData_d->z) {
275e8d2b73aSMark Adams       auto z = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->z);
276e8d2b73aSMark Adams       delete z;
2778a6f2e61SMark Adams     }
2788a6f2e61SMark Adams #if defined(LANDAU_LAYOUT_LEFT) // preallocate dynamic data, no copy
2798fdabdddSMark Adams     auto z = static_cast<Kokkos::View<PetscReal***, Kokkos::LayoutLeft>*>(SData_d->ipfdf_data);
2808a6f2e61SMark Adams #else
2818fdabdddSMark Adams     auto z = static_cast<Kokkos::View<PetscReal***, Kokkos::LayoutRight>*>(SData_d->ipfdf_data);
2828a6f2e61SMark Adams #endif
2838a6f2e61SMark Adams     delete z;
284e8d2b73aSMark Adams     auto w = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->w);
285e8d2b73aSMark Adams     delete w;
286e8d2b73aSMark Adams     auto Eq_m = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->Eq_m);
287e8d2b73aSMark Adams     delete Eq_m;
2888a6f2e61SMark Adams     // offset
2898a6f2e61SMark Adams     auto nc = static_cast<Kokkos::View<PetscInt*, Kokkos::LayoutLeft>*>(SData_d->NCells);
2908a6f2e61SMark Adams     delete nc;
2918a6f2e61SMark Adams     auto soff = static_cast<Kokkos::View<PetscInt*, Kokkos::LayoutLeft>*>(SData_d->species_offset);
2928a6f2e61SMark Adams     delete soff;
2938a6f2e61SMark Adams     auto moff = static_cast<Kokkos::View<PetscInt*, Kokkos::LayoutLeft>*>(SData_d->mat_offset);
2948a6f2e61SMark Adams     delete moff;
2958a6f2e61SMark Adams     auto ipoff = static_cast<Kokkos::View<PetscInt*, Kokkos::LayoutLeft>*>(SData_d->ip_offset);
2968a6f2e61SMark Adams     delete ipoff;
2978a6f2e61SMark Adams     auto eoff = static_cast<Kokkos::View<PetscInt*, Kokkos::LayoutLeft>*>(SData_d->elem_offset);
2988a6f2e61SMark Adams     delete eoff;
2998a6f2e61SMark Adams     auto ipfoff = static_cast<Kokkos::View<PetscInt*, Kokkos::LayoutLeft>*>(SData_d->ipf_offset);
3008a6f2e61SMark Adams     delete ipfoff;
301bfc784b7SMark Adams     auto coo_elem_offsets = static_cast<Kokkos::View<LandauIdx*, Kokkos::LayoutLeft>*>((void*)SData_d->coo_elem_offsets);
302bfc784b7SMark Adams     delete coo_elem_offsets;
303bfc784b7SMark Adams     auto coo_elem_fullNb = static_cast<Kokkos::View<LandauIdx*, Kokkos::LayoutLeft>*>((void*)SData_d->coo_elem_fullNb);
304bfc784b7SMark Adams     delete coo_elem_fullNb;
305cada7fc7SMark Adams     auto coo_elem_point_offsets = static_cast<Kokkos::View<LandauIdx*, Kokkos::LayoutLeft>*>((void*)SData_d->coo_elem_point_offsets);
306bfc784b7SMark Adams     delete coo_elem_point_offsets;
307bfc784b7SMark Adams     SData_d->coo_elem_offsets = NULL;
308bfc784b7SMark Adams     SData_d->coo_elem_point_offsets = NULL;
309bfc784b7SMark Adams     SData_d->coo_elem_fullNb = NULL;
310*a31f6053SMark Adams     auto coo_vals = static_cast<Kokkos::View<PetscScalar*, Kokkos::LayoutRight, Kokkos::DefaultExecutionSpace>*>((void*)SData_d->coo_vals);
311*a31f6053SMark Adams     delete coo_vals;
312af0767daSMark Adams   }
313e8d2b73aSMark Adams   PetscFunctionReturn(0);
314e8d2b73aSMark Adams }
315e8d2b73aSMark Adams 
31659118022SMark Adams #define KOKKOS_SHARED_LEVEL 0 // 0 is shared, 1 is global
31759118022SMark Adams 
3188a6f2e61SMark Adams KOKKOS_INLINE_FUNCTION
319bfc784b7SMark Adams PetscErrorCode landau_mat_assemble(PetscSplitCSRDataStructure d_mat, PetscScalar *coo_vals, const PetscScalar Aij, const PetscInt f, const PetscInt g, const PetscInt Nb,
320bfc784b7SMark Adams                                    PetscInt moffset, const PetscInt elem, const PetscInt fieldA, const P4estVertexMaps *d_maps,
321cada7fc7SMark Adams                                    const LandauIdx coo_elem_offsets[], const LandauIdx coo_elem_fullNb[], const LandauIdx (*coo_elem_point_offsets)[LANDAU_MAX_NQ+1],
322bfc784b7SMark Adams                                    const PetscInt glb_elem_idx, const PetscInt bid_coo_sz_batch)
3238a6f2e61SMark Adams {
324ad4b5651SMark Adams   PetscInt               idx,q,nr,nc,d;
3258a6f2e61SMark Adams   const LandauIdx *const Idxs = &d_maps->gIdx[elem][fieldA][0];
326bfc784b7SMark Adams   PetscScalar            row_scale[LANDAU_MAX_Q_FACE]={0},col_scale[LANDAU_MAX_Q_FACE]={0};
327bfc784b7SMark Adams   if (coo_vals) { // mirror (i,j) in CreateStaticGPUData
328bfc784b7SMark Adams     const int fullNb = coo_elem_fullNb[glb_elem_idx],fullNb2=fullNb*fullNb;
329bfc784b7SMark Adams     idx = Idxs[f];
330bfc784b7SMark Adams     if (idx >= 0) {
331bfc784b7SMark Adams       nr = 1;
332bfc784b7SMark Adams       row_scale[0] = 1.;
333bfc784b7SMark Adams     } else {
334bfc784b7SMark Adams       idx = -idx - 1;
335bfc784b7SMark Adams       for (q = 0, nr = 0; q < d_maps->num_face; q++, nr++) {
336bfc784b7SMark Adams         if (d_maps->c_maps[idx][q].gid < 0) break;
337bfc784b7SMark Adams         row_scale[q] = d_maps->c_maps[idx][q].scale;
338bfc784b7SMark Adams       }
339bfc784b7SMark Adams     }
340bfc784b7SMark Adams     idx = Idxs[g];
341bfc784b7SMark Adams     if (idx >= 0) {
342bfc784b7SMark Adams       nc = 1;
343bfc784b7SMark Adams       col_scale[0] = 1.;
344bfc784b7SMark Adams     } else {
345bfc784b7SMark Adams       idx = -idx - 1;
346bfc784b7SMark Adams       nc = d_maps->num_face;
347bfc784b7SMark Adams       for (q = 0, nc = 0; q < d_maps->num_face; q++, nc++) {
348bfc784b7SMark Adams         if (d_maps->c_maps[idx][q].gid < 0) break;
349bfc784b7SMark Adams         col_scale[q] = d_maps->c_maps[idx][q].scale;
350bfc784b7SMark Adams       }
351bfc784b7SMark Adams     }
352cada7fc7SMark Adams     const int idx0 = bid_coo_sz_batch + coo_elem_offsets[glb_elem_idx] + fieldA*fullNb2 + fullNb * coo_elem_point_offsets[glb_elem_idx][f] + nr * coo_elem_point_offsets[glb_elem_idx][g];
353bfc784b7SMark Adams     for (int q = 0, idx2 = idx0; q < nr; q++) {
354bfc784b7SMark Adams       for (int d = 0; d < nc; d++, idx2++) {
355bfc784b7SMark Adams         coo_vals[idx2] = row_scale[q]*col_scale[d]*Aij;
356bfc784b7SMark Adams       }
357bfc784b7SMark Adams     }
358bfc784b7SMark Adams   } else {
359bfc784b7SMark Adams     PetscScalar            vals[LANDAU_MAX_Q_FACE*LANDAU_MAX_Q_FACE]={0};
360ad4b5651SMark Adams     PetscInt               rows[LANDAU_MAX_Q_FACE],cols[LANDAU_MAX_Q_FACE];
361ad4b5651SMark Adams     idx = Idxs[f];
3628a6f2e61SMark Adams     if (idx >= 0) {
3638a6f2e61SMark Adams       nr = 1;
364ad4b5651SMark Adams       rows[0] = idx;
365ad4b5651SMark Adams       row_scale[0] = 1.;
3668a6f2e61SMark Adams     } else {
367ad4b5651SMark Adams       idx = -idx - 1;
368ad4b5651SMark Adams       for (q = 0, nr = 0; q < d_maps->num_face; q++, nr++) {
369ad4b5651SMark Adams         if (d_maps->c_maps[idx][q].gid < 0) break;
370ad4b5651SMark Adams         rows[q]     = d_maps->c_maps[idx][q].gid;
371ad4b5651SMark Adams         row_scale[q] = d_maps->c_maps[idx][q].scale;
3728a6f2e61SMark Adams       }
373ad4b5651SMark Adams     }
374ad4b5651SMark Adams     idx = Idxs[g];
3758a6f2e61SMark Adams     if (idx >= 0) {
3768a6f2e61SMark Adams       nc = 1;
377ad4b5651SMark Adams       cols[0] = idx;
378ad4b5651SMark Adams       col_scale[0] = 1.;
3798a6f2e61SMark Adams     } else {
380ad4b5651SMark Adams       idx = -idx - 1;
381ad4b5651SMark Adams       for (q = 0, nc = 0; q < d_maps->num_face; q++, nc++) {
382ad4b5651SMark Adams         if (d_maps->c_maps[idx][q].gid < 0) break;
383ad4b5651SMark Adams         cols[q]     = d_maps->c_maps[idx][q].gid;
384ad4b5651SMark Adams         col_scale[q] = d_maps->c_maps[idx][q].scale;
3858a6f2e61SMark Adams       }
386ad4b5651SMark Adams     }
387bfc784b7SMark Adams 
388ad4b5651SMark Adams     for (q = 0; q < nr; q++) rows[q] = rows[q] + moffset;
389ad4b5651SMark Adams     for (q = 0; q < nc; q++) cols[q] = cols[q] + moffset;
3908a6f2e61SMark Adams     for (q = 0; q < nr; q++) {
3918a6f2e61SMark Adams       for (d = 0; d < nc; d++) {
392ad4b5651SMark Adams         vals[q*nc + d] = row_scale[q]*col_scale[d]*Aij;
3938a6f2e61SMark Adams       }
3948a6f2e61SMark Adams     }
395ad4b5651SMark Adams     MatSetValuesDevice(d_mat,nr,rows,nc,cols,vals,ADD_VALUES);
396bfc784b7SMark Adams   }
3978a6f2e61SMark Adams   return 0;
3988a6f2e61SMark Adams }
3998a6f2e61SMark Adams 
4008fdabdddSMark Adams PetscErrorCode LandauKokkosJacobian(DM plex[], const PetscInt Nq, const PetscInt batch_sz, const PetscInt num_grids, const PetscInt a_numCells[], PetscReal a_Eq_m[], PetscScalar a_elem_closure[],
401d2319daeSMark Adams                                     const PetscScalar a_xarray[], const LandauStaticData *SData_d, const PetscReal shift,
4028a6f2e61SMark Adams                                     const PetscLogEvent events[], const PetscInt a_mat_offset[], const PetscInt a_species_offset[], Mat subJ[], Mat JacP)
403e8d2b73aSMark Adams {
404e8d2b73aSMark Adams   using scr_mem_t = Kokkos::DefaultExecutionSpace::scratch_memory_space;
40519be780dSMark Adams   using real2_scr_t = Kokkos::View<PetscScalar**, Kokkos::LayoutRight, scr_mem_t>;
406e8d2b73aSMark Adams   using g2_scr_t = Kokkos::View<PetscReal***, Kokkos::LayoutRight, scr_mem_t>;
407e8d2b73aSMark Adams   using g3_scr_t = Kokkos::View<PetscReal****, Kokkos::LayoutRight, scr_mem_t>;
4088fdabdddSMark Adams   PetscInt          Nb=Nq,dim,num_cells_max,Nf_max,num_cells_batch;
409dbabbaf5SMark Adams   int               nfaces=0,vector_size=512/Nq;
410e8d2b73aSMark Adams   LandauCtx         *ctx;
411e8d2b73aSMark Adams   PetscReal         *d_Eq_m=NULL;
4128a6f2e61SMark Adams   PetscScalar       *d_vertex_f=NULL;
4138a6f2e61SMark Adams   P4estVertexMaps   *maps[LANDAU_MAX_GRIDS]; // this gets captured
4148a6f2e61SMark Adams   PetscSplitCSRDataStructure d_mat;
4158fdabdddSMark Adams   PetscContainer    container;
416bd08a171SMark Adams   const int         conc = Kokkos::DefaultExecutionSpace().concurrency(), openmp = !!(conc < 1000), team_size = (openmp==0) ? Nq : 1;
417bfc784b7SMark Adams   const PetscInt    coo_sz_batch = SData_d->coo_size/batch_sz; // capture
418e8d2b73aSMark Adams   auto              d_alpha_k = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->alpha); //static data
419e8d2b73aSMark Adams   const PetscReal   *d_alpha = d_alpha_k->data();
4208a6f2e61SMark Adams   const PetscInt    Nftot = d_alpha_k->size(); // total number of species
421e8d2b73aSMark Adams   auto              d_beta_k = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->beta);
422e8d2b73aSMark Adams   const PetscReal   *d_beta = d_beta_k->data();
423e8d2b73aSMark Adams   auto              d_invMass_k = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->invMass);
424e8d2b73aSMark Adams   const PetscReal   *d_invMass = d_invMass_k->data();
425e8d2b73aSMark Adams   auto              d_B_k = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->B);
426e8d2b73aSMark Adams   const PetscReal   *d_BB = d_B_k->data();
427e8d2b73aSMark Adams   auto              d_D_k = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->D);
428e8d2b73aSMark Adams   const PetscReal   *d_DD = d_D_k->data();
429e8d2b73aSMark Adams   auto              d_invJ_k = *static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->invJ);     // use Kokkos vector in kernels
430e8d2b73aSMark Adams   auto              d_x_k = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->x); //static data
431e8d2b73aSMark Adams   const PetscReal   *d_x = d_x_k->data();
432e8d2b73aSMark Adams   auto              d_y_k = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->y); //static data
433e8d2b73aSMark Adams   const PetscReal   *d_y = d_y_k->data();
434e8d2b73aSMark Adams   auto              d_z_k = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->z); //static data
4358a6f2e61SMark Adams   const PetscReal   *d_z = (LANDAU_DIM==3) ? d_z_k->data() : NULL;
4368a6f2e61SMark Adams   auto              d_w_k = *static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->w); //static data
4378a6f2e61SMark Adams   const PetscReal   *d_w = d_w_k.data();
4388fdabdddSMark Adams   // grid offsets - single vertex grid data
4398a6f2e61SMark Adams   auto              d_numCells_k = static_cast<Kokkos::View<PetscInt*, Kokkos::LayoutLeft>*>(SData_d->NCells);
4408a6f2e61SMark Adams   const PetscInt   *d_numCells = d_numCells_k->data();
4418a6f2e61SMark Adams   auto              d_species_offset_k = static_cast<Kokkos::View<PetscInt*, Kokkos::LayoutLeft>*>(SData_d->species_offset);
4428a6f2e61SMark Adams   const PetscInt   *d_species_offset = d_species_offset_k->data();
4438a6f2e61SMark Adams   auto              d_mat_offset_k = static_cast<Kokkos::View<PetscInt*, Kokkos::LayoutLeft>*>(SData_d->mat_offset);
4448a6f2e61SMark Adams   const PetscInt   *d_mat_offset = d_mat_offset_k->data();
4458a6f2e61SMark Adams   auto              d_ip_offset_k = static_cast<Kokkos::View<PetscInt*, Kokkos::LayoutLeft>*>(SData_d->ip_offset);
4468a6f2e61SMark Adams   const PetscInt   *d_ip_offset = d_ip_offset_k->data();
4478a6f2e61SMark Adams   auto              d_ipf_offset_k = static_cast<Kokkos::View<PetscInt*, Kokkos::LayoutLeft>*>(SData_d->ipf_offset);
4488a6f2e61SMark Adams   const PetscInt   *d_ipf_offset = d_ipf_offset_k->data();
4498a6f2e61SMark Adams   auto              d_elem_offset_k = static_cast<Kokkos::View<PetscInt*, Kokkos::LayoutLeft>*>(SData_d->elem_offset);
4508a6f2e61SMark Adams   const PetscInt   *d_elem_offset = d_elem_offset_k->data();
4518fdabdddSMark Adams #if defined(LANDAU_LAYOUT_LEFT)         // preallocate dynamic data, including batched vertices
4528fdabdddSMark Adams   Kokkos::View<PetscReal***, Kokkos::LayoutLeft > d_fdf_k = *static_cast<Kokkos::View<PetscReal***, Kokkos::LayoutLeft >*>(SData_d->ipfdf_data);
4538a6f2e61SMark Adams #else
4548fdabdddSMark Adams   Kokkos::View<PetscReal***, Kokkos::LayoutRight > d_fdf_k = *static_cast<Kokkos::View<PetscReal***, Kokkos::LayoutRight >*>(SData_d->ipfdf_data);
4558a6f2e61SMark Adams #endif
4568fdabdddSMark Adams   auto              d_Eq_m_k = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->Eq_m); // static storage, dynamci data - E(t), copy later, single vertex
457bfc784b7SMark Adams   // COO
458cada7fc7SMark Adams   auto d_coo_elem_offsets_k       = static_cast<Kokkos::View<LandauIdx*, Kokkos::LayoutLeft>*>(SData_d->coo_elem_offsets);
459cada7fc7SMark Adams   LandauIdx *d_coo_elem_offsets   = (SData_d->coo_size==0) ? NULL : d_coo_elem_offsets_k->data();
460cada7fc7SMark Adams   auto d_coo_elem_fullNb_k        = static_cast<Kokkos::View<LandauIdx*, Kokkos::LayoutLeft>*>(SData_d->coo_elem_fullNb);
461cada7fc7SMark Adams   LandauIdx *d_coo_elem_fullNb    = (SData_d->coo_size==0) ? NULL : d_coo_elem_fullNb_k->data();
462cada7fc7SMark Adams   auto d_coo_elem_point_offsets_k = static_cast<Kokkos::View<LandauIdx*, Kokkos::LayoutLeft>*>(SData_d->coo_elem_point_offsets);
463cada7fc7SMark Adams   LandauIdx (*d_coo_elem_point_offsets)[LANDAU_MAX_NQ+1] = (SData_d->coo_size==0) ? NULL : (LandauIdx (*)[LANDAU_MAX_NQ+1])d_coo_elem_point_offsets_k->data();
464*a31f6053SMark Adams   auto d_coo_vals_k               = static_cast<Kokkos::View<PetscScalar*, Kokkos::LayoutRight>*>(SData_d->coo_vals);
465*a31f6053SMark Adams   PetscScalar *d_coo_vals         = (SData_d->coo_size==0) ? NULL : d_coo_vals_k->data();
4668fdabdddSMark Adams 
467e8d2b73aSMark Adams   PetscFunctionBegin;
468*a31f6053SMark Adams   while (vector_size & (vector_size - 1)) vector_size = vector_size & (vector_size - 1);
469dbabbaf5SMark Adams   if (vector_size>16) vector_size = 16; // printf("DEBUG\n");
4709566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(events[3],0,0,0,0));
4719566063dSJacob Faibussowitsch   PetscCall(DMGetApplicationContext(plex[0], &ctx));
47228b400f6SJacob Faibussowitsch   PetscCheck(ctx,PETSC_COMM_SELF, PETSC_ERR_PLIB, "no context");
4739566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(plex[0], &dim));
47463a3b9bcSJacob Faibussowitsch   PetscCheck(LANDAU_DIM == dim,PETSC_COMM_WORLD, PETSC_ERR_PLIB, "dim %" PetscInt_FMT " != LANDAU_DIM %d",dim,LANDAU_DIM);
475a587d139SMark   if (ctx->gpu_assembly) {
4769566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject) JacP, "assembly_maps", (PetscObject *) &container));
477bfc784b7SMark Adams     if (container) {
478a587d139SMark       P4estVertexMaps   *h_maps=NULL;
4799566063dSJacob Faibussowitsch       PetscCall(PetscContainerGetPointer(container, (void **) &h_maps));
4808a6f2e61SMark Adams       for (PetscInt grid=0 ; grid<num_grids ; grid++) {
4818a6f2e61SMark Adams         if (h_maps[grid].d_self) {
4828a6f2e61SMark Adams           maps[grid] = h_maps[grid].d_self;
4838a6f2e61SMark Adams           nfaces = h_maps[grid].num_face; // nface=0 for CPU assembly
484a587d139SMark         } else {
485a587d139SMark           SETERRQ(PETSC_COMM_SELF, PETSC_ERR_PLIB, "GPU assembly but no metadata in container");
486a587d139SMark         }
4878a6f2e61SMark Adams       }
488bfc784b7SMark Adams       if (!d_coo_vals) {
489a587d139SMark         // this does the setup the first time called
4909566063dSJacob Faibussowitsch         PetscCall(MatKokkosGetDeviceMatWrite(JacP,&d_mat));
491bfc784b7SMark Adams       } else {
4928fdabdddSMark Adams         d_mat = NULL;
493a587d139SMark       }
494bfc784b7SMark Adams     } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_PLIB, "GPU assembly but no metadata in container");
495a587d139SMark   } else {
4968a6f2e61SMark Adams     for (PetscInt grid=0 ; grid<num_grids ; grid++) maps[grid] = NULL;
4978a6f2e61SMark Adams     nfaces = 0;
4988fdabdddSMark Adams     d_mat = NULL;
4998fdabdddSMark Adams     container = NULL;
500a587d139SMark   }
5018fdabdddSMark Adams   num_cells_batch = Nf_max = num_cells_max = 0;
5028a6f2e61SMark Adams   for (PetscInt grid=0 ; grid<num_grids ; grid++) {
5038a6f2e61SMark Adams     int Nfloc = a_species_offset[grid+1] - a_species_offset[grid];
5048a6f2e61SMark Adams     if (Nfloc > Nf_max) Nf_max = Nfloc;
5058a6f2e61SMark Adams     if (a_numCells[grid] > num_cells_max) num_cells_max = a_numCells[grid];
5068fdabdddSMark Adams     num_cells_batch += a_numCells[grid]; // we don't have a host element offset here (but in ctx)
5078a6f2e61SMark Adams   }
5088a6f2e61SMark Adams   const PetscInt totDim_max = Nf_max*Nq, elem_mat_size_max = totDim_max*totDim_max;
5098a6f2e61SMark Adams   const PetscInt elem_mat_num_cells_max_grid = container ? 0 : num_cells_max;
510*a31f6053SMark Adams   Kokkos::View<PetscScalar****, Kokkos::LayoutRight> d_elem_mats("element matrices", batch_sz, num_grids, elem_mat_num_cells_max_grid, elem_mat_size_max); // not used (cpu assembly)
5118a6f2e61SMark Adams   const Kokkos::View<PetscReal*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> >  h_Eq_m_k (a_Eq_m, Nftot);
5128a6f2e61SMark Adams   if (a_elem_closure || a_xarray) {
513e8d2b73aSMark Adams     Kokkos::deep_copy (*d_Eq_m_k, h_Eq_m_k);
514e8d2b73aSMark Adams     d_Eq_m = d_Eq_m_k->data();
5158a6f2e61SMark Adams   } else d_Eq_m = NULL;
5169566063dSJacob Faibussowitsch   PetscCall(PetscKokkosInitializeCheck());
5179566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(events[3],0,0,0,0));
5188a6f2e61SMark Adams   if (a_elem_closure || a_xarray) { // Jacobian, create f & df
5198a6f2e61SMark Adams     Kokkos::View<PetscScalar*, Kokkos::LayoutLeft> *d_vertex_f_k = NULL;
5209566063dSJacob Faibussowitsch     PetscCall(PetscLogEventBegin(events[1],0,0,0,0));
5218a6f2e61SMark Adams     if (a_elem_closure) {
5228a6f2e61SMark Adams       PetscInt closure_sz = 0; // argh, don't have this on the host!!!
5238a6f2e61SMark Adams       for (PetscInt grid=0 ; grid<num_grids ; grid++) {
5248a6f2e61SMark Adams         PetscInt nfloc = a_species_offset[grid+1] - a_species_offset[grid];
5258a6f2e61SMark Adams         closure_sz     += Nq*nfloc*a_numCells[grid];
5268a6f2e61SMark Adams       }
5278fdabdddSMark Adams       closure_sz *= batch_sz;
5288a6f2e61SMark Adams       d_vertex_f_k = new Kokkos::View<PetscScalar*, Kokkos::LayoutLeft> ("closure",closure_sz);
5298a6f2e61SMark Adams       const Kokkos::View<PetscScalar*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_closure_k (a_elem_closure, closure_sz); // Vertex data for each element
5308a6f2e61SMark Adams       Kokkos::deep_copy (*d_vertex_f_k, h_closure_k);
5318a6f2e61SMark Adams       d_vertex_f  = d_vertex_f_k->data();
532af0767daSMark Adams     } else {
5338a6f2e61SMark Adams       d_vertex_f = (PetscScalar*)a_xarray;
534af0767daSMark Adams     }
5359566063dSJacob Faibussowitsch     PetscCall(PetscLogEventEnd(events[1],0,0,0,0));
5369566063dSJacob Faibussowitsch     PetscCall(PetscLogEventBegin(events[8],0,0,0,0));
5379566063dSJacob Faibussowitsch     PetscCall(PetscLogGpuTimeBegin());
53819be780dSMark Adams 
53919be780dSMark Adams     const int scr_bytes_fdf = real2_scr_t::shmem_size(Nf_max,Nb);
540dbabbaf5SMark Adams     PetscCall(PetscInfo(plex[0], "df & f shared memory size: %d bytes in level, %d num cells total=%d, team size=%d, vector size=%d, #face=%d, Nf_max=%d\n",scr_bytes_fdf,KOKKOS_SHARED_LEVEL,num_cells_batch*batch_sz,team_size,vector_size,nfaces,Nf_max));
541dbabbaf5SMark Adams     Kokkos::parallel_for("f, df", Kokkos::TeamPolicy<>(num_cells_batch*batch_sz, team_size, /* Kokkos::AUTO */ vector_size).set_scratch_size(KOKKOS_SHARED_LEVEL, Kokkos::PerTeam(scr_bytes_fdf)), KOKKOS_LAMBDA (const team_member team) {
5428fdabdddSMark Adams         const PetscInt b_Nelem = d_elem_offset[num_grids], b_elem_idx = team.league_rank()%b_Nelem, b_id = team.league_rank()/b_Nelem, IPf_sz_glb = d_ipf_offset[num_grids];
5438a6f2e61SMark Adams         // find my grid
5448fdabdddSMark Adams         PetscInt grid = 0;
5458fdabdddSMark Adams         while (b_elem_idx >= d_elem_offset[grid+1]) grid++;
5468a6f2e61SMark Adams         {
5478fdabdddSMark Adams           const PetscInt     loc_nip = d_numCells[grid]*Nq, loc_Nf = d_species_offset[grid+1] - d_species_offset[grid], loc_elem = b_elem_idx - d_elem_offset[grid];
5488fdabdddSMark Adams           const PetscInt     moffset = LAND_MOFFSET(b_id,grid,batch_sz,num_grids,d_mat_offset);
54919be780dSMark Adams           {
55019be780dSMark Adams             real2_scr_t    s_coef_k(team.team_scratch(KOKKOS_SHARED_LEVEL),Nf_max,Nb);
55119be780dSMark Adams             PetscScalar     *coef;
5528fdabdddSMark Adams             const PetscReal *invJe = &d_invJ_k((d_ip_offset[grid] + loc_elem*Nq)*dim*dim);
553a587d139SMark             // un pack IPData
5548a6f2e61SMark Adams             if (!maps[grid]) {
5558fdabdddSMark Adams               coef = &d_vertex_f[b_id*IPf_sz_glb + d_ipf_offset[grid] + loc_elem*Nb*loc_Nf]; // closure and IP indexing are the same
556af0767daSMark Adams             } else {
55719be780dSMark Adams               coef = s_coef_k.data();
55819be780dSMark Adams               Kokkos::parallel_for(Kokkos::TeamThreadRange(team,0,(int)loc_Nf), [=] (int f) {
55919be780dSMark Adams                   //for (int f = 0; f < loc_Nf; ++f) {
56019be780dSMark Adams                   Kokkos::parallel_for(Kokkos::ThreadVectorRange(team,0,(int)Nb), [=] (int b) {
56119be780dSMark Adams                       //for (int b = 0; b < Nb; ++b) {
56219be780dSMark Adams                       LandauIdx idx = maps[grid]->gIdx[loc_elem][f][b];
563af0767daSMark Adams                       if (idx >= 0) {
56419be780dSMark Adams                         coef[f*Nb+b] = d_vertex_f[idx+moffset]; // xarray data, not IP, need raw array to deal with CPU assemble case (not used)
565af0767daSMark Adams                       } else {
566af0767daSMark Adams                         idx = -idx - 1;
56719be780dSMark Adams                         coef[f*Nb+b] = 0;
5688a6f2e61SMark Adams                         for (int q = 0; q < maps[grid]->num_face; q++) {
5698a6f2e61SMark Adams                           PetscInt    id = maps[grid]->c_maps[idx][q].gid;
5708a6f2e61SMark Adams                           PetscScalar scale = maps[grid]->c_maps[idx][q].scale;
571f26f10aaSMark Adams                           if (id >= 0) coef[f*Nb+b] += scale*d_vertex_f[id+moffset];
572af0767daSMark Adams                         }
573af0767daSMark Adams                       }
57419be780dSMark Adams                     });
57519be780dSMark Adams                 });
576af0767daSMark Adams             }
57719be780dSMark Adams             team.team_barrier();
578a587d139SMark             Kokkos::parallel_for(Kokkos::TeamThreadRange(team,0,Nq), [=] (int myQi) {
5798fdabdddSMark Adams                 const PetscReal *const  invJ = &invJe[myQi*dim*dim]; // b_elem_idx: batch element index
580a587d139SMark                 const PetscReal         *Bq = &d_BB[myQi*Nb], *Dq = &d_DD[myQi*Nb*dim];
5818fdabdddSMark Adams                 Kokkos::parallel_for(Kokkos::ThreadVectorRange(team,0,(int)loc_Nf), [=] (int f) {
582a587d139SMark                     PetscInt   b, e, d;
583e8d2b73aSMark Adams                     PetscReal  refSpaceDer[LANDAU_DIM];
5848fdabdddSMark Adams                     const PetscInt idx = d_ipf_offset[grid] + f*loc_nip + loc_elem*Nq + myQi;
5858fdabdddSMark Adams                     d_fdf_k(b_id,0,idx) = 0.0;
586a587d139SMark                     for (d = 0; d < LANDAU_DIM; ++d) refSpaceDer[d] = 0.0;
587a587d139SMark                     for (b = 0; b < Nb; ++b) {
58819be780dSMark Adams                       d_fdf_k(b_id,0,idx) += Bq[b]*PetscRealPart(coef[f*Nb+b]);
58919be780dSMark Adams                       for (d = 0; d < dim; ++d) refSpaceDer[d] += Dq[b*dim+d]*PetscRealPart(coef[f*Nb+b]);
590a587d139SMark                     }
591a587d139SMark                     for (d = 0; d < dim; ++d) {
5928fdabdddSMark Adams                       for (e = 0, d_fdf_k(b_id,d+1,idx) = 0.0; e < dim; ++e) {
5938fdabdddSMark Adams                         d_fdf_k(b_id,d+1,idx) += invJ[e*dim+d]*refSpaceDer[e];
594a587d139SMark                       }
595a587d139SMark                     }
5968a6f2e61SMark Adams                   }); // f
5978a6f2e61SMark Adams               }); // myQi
5988a6f2e61SMark Adams           }
59919be780dSMark Adams           team.team_barrier();
60019be780dSMark Adams         } // 'grid' scope
6018a6f2e61SMark Adams       }); // global elems - fdf
6028a6f2e61SMark Adams     Kokkos::fence();
6039566063dSJacob Faibussowitsch     PetscCall(PetscLogGpuTimeEnd()); // is this a fence?
6049566063dSJacob Faibussowitsch     PetscCall(PetscLogEventEnd(events[8],0,0,0,0));
605e6118d12SMark Adams     // Jacobian
60681451871SMark Adams     auto jac_lambda = KOKKOS_LAMBDA (const team_member team) {
6078fdabdddSMark Adams       const PetscInt b_Nelem = d_elem_offset[num_grids], b_elem_idx = team.league_rank()%b_Nelem, b_id = team.league_rank()/b_Nelem;
6088a6f2e61SMark Adams       // find my grid
6098fdabdddSMark Adams       PetscInt grid = 0;
6108fdabdddSMark Adams       while (b_elem_idx >= d_elem_offset[grid+1]) grid++;
6118a6f2e61SMark Adams       {
61219be780dSMark Adams         const PetscInt  loc_Nf = d_species_offset[grid+1]-d_species_offset[grid], loc_elem = b_elem_idx - d_elem_offset[grid];
6138fdabdddSMark Adams         const PetscInt  moffset = LAND_MOFFSET(b_id,grid,batch_sz,num_grids,d_mat_offset);
61419be780dSMark Adams         const PetscInt  f_off = d_species_offset[grid], totDim = loc_Nf*Nq;
6158fdabdddSMark Adams         g2_scr_t        g2(team.team_scratch(KOKKOS_SHARED_LEVEL),dim,loc_Nf,Nq);
6168fdabdddSMark Adams         g3_scr_t        g3(team.team_scratch(KOKKOS_SHARED_LEVEL),dim,dim,loc_Nf,Nq);
6178fdabdddSMark Adams         g2_scr_t        gg2(team.team_scratch(KOKKOS_SHARED_LEVEL),dim,loc_Nf,Nq);
6188fdabdddSMark Adams         g3_scr_t        gg3(team.team_scratch(KOKKOS_SHARED_LEVEL),dim,dim,loc_Nf,Nq);
619e0eea495SMark         // get g2[] & g3[]
620e0eea495SMark         Kokkos::parallel_for(Kokkos::TeamThreadRange(team,0,Nq), [=] (int myQi) {
621e0eea495SMark             using Kokkos::parallel_reduce;
6228fdabdddSMark Adams             const PetscInt  jpidx_glb = d_ip_offset[grid] + loc_elem * Nq + myQi;
6238fdabdddSMark Adams             const PetscReal *invJ = &d_invJ_k(jpidx_glb*dim*dim);
6248fdabdddSMark Adams             const PetscReal vj[3] = {d_x[jpidx_glb], d_y[jpidx_glb], d_z ? d_z[jpidx_glb] : 0}, wj = d_w[jpidx_glb];
6258a6f2e61SMark Adams             landau_inner_red::TensorValueType gg_temp; // reduce on part of gg2 and g33 for IP jpidx_g
6268fdabdddSMark Adams             Kokkos::parallel_reduce(Kokkos::ThreadVectorRange (team, (int)d_ip_offset[num_grids]), [=] (const int& ipidx, landau_inner_red::TensorValueType & ggg) {
627e8d2b73aSMark Adams                 const PetscReal wi = d_w[ipidx], x = d_x[ipidx], y = d_y[ipidx];
62852cdd6eaSMark                 PetscReal       temp1[3] = {0, 0, 0}, temp2 = 0;
6298fdabdddSMark Adams                 PetscInt        fieldA,d2,d3,f_off_r,grid_r,ipidx_g,nip_loc_r,loc_Nf_r;
630e0eea495SMark #if LANDAU_DIM==2
6318a6f2e61SMark Adams                 PetscReal Ud[2][2], Uk[2][2], mask = (PetscAbs(vj[0]-x) < 100*PETSC_SQRT_MACHINE_EPSILON && PetscAbs(vj[1]-y) < 100*PETSC_SQRT_MACHINE_EPSILON) ? 0. : 1.;
6328a6f2e61SMark Adams                 LandauTensor2D(vj, x, y, Ud, Uk, mask);
63352cdd6eaSMark #else
6347620afa1SMark Adams                 PetscReal U[3][3], z = d_z[ipidx], mask = (PetscAbs(vj[0]-x) < 100*PETSC_SQRT_MACHINE_EPSILON && PetscAbs(vj[1]-y) < 100*PETSC_SQRT_MACHINE_EPSILON && PetscAbs(vj[2]-z) < 100*PETSC_SQRT_MACHINE_EPSILON) ? 0. : 1.;
6358a6f2e61SMark Adams                 LandauTensor3D(vj, x, y, z, U, mask);
63652cdd6eaSMark #endif
6378a6f2e61SMark Adams                 grid_r = 0;
6388a6f2e61SMark Adams                 while (ipidx >= d_ip_offset[grid_r+1]) grid_r++; // yuck search for grid
6398a6f2e61SMark Adams                 f_off_r = d_species_offset[grid_r];
6408a6f2e61SMark Adams                 ipidx_g = ipidx - d_ip_offset[grid_r];
6418a6f2e61SMark Adams                 nip_loc_r = d_numCells[grid_r]*Nq;
6428fdabdddSMark Adams                 loc_Nf_r = d_species_offset[grid_r+1] - d_species_offset[grid_r];
6438fdabdddSMark Adams                 for (fieldA = 0; fieldA < loc_Nf_r; ++fieldA) {
6448fdabdddSMark Adams                   const PetscInt idx = d_ipf_offset[grid_r] + fieldA*nip_loc_r + ipidx_g;
6458fdabdddSMark Adams                   temp1[0] += d_fdf_k(b_id,1,idx)*d_beta[fieldA+f_off_r]*d_invMass[fieldA+f_off_r];
6468fdabdddSMark Adams                   temp1[1] += d_fdf_k(b_id,2,idx)*d_beta[fieldA+f_off_r]*d_invMass[fieldA+f_off_r];
64752cdd6eaSMark #if LANDAU_DIM==3
6488fdabdddSMark Adams                   temp1[2] += d_fdf_k(b_id,3,idx)*d_beta[fieldA+f_off_r]*d_invMass[fieldA+f_off_r];
64952cdd6eaSMark #endif
6508fdabdddSMark Adams                   temp2    += d_fdf_k(b_id,0,idx)*d_beta[fieldA+f_off_r];
65152cdd6eaSMark                 }
65252cdd6eaSMark                 temp1[0] *= wi;
65352cdd6eaSMark                 temp1[1] *= wi;
65452cdd6eaSMark #if LANDAU_DIM==3
65552cdd6eaSMark                 temp1[2] *= wi;
65652cdd6eaSMark #endif
65752cdd6eaSMark                 temp2    *= wi;
65852cdd6eaSMark #if LANDAU_DIM==2
65952cdd6eaSMark                 for (d2 = 0; d2 < 2; d2++) {
660e0eea495SMark                   for (d3 = 0; d3 < 2; ++d3) {
661e0eea495SMark                     /* K = U * grad(f): g2=e: i,A */
66252cdd6eaSMark                     ggg.gg2[d2] += Uk[d2][d3]*temp1[d3];
663e0eea495SMark                     /* D = -U * (I \kron (fx)): g3=f: i,j,A */
66452cdd6eaSMark                     ggg.gg3[d2][d3] += Ud[d2][d3]*temp2;
665e0eea495SMark                   }
666e0eea495SMark                 }
667e0eea495SMark #else
668e0eea495SMark                 for (d2 = 0; d2 < 3; ++d2) {
669e0eea495SMark                   for (d3 = 0; d3 < 3; ++d3) {
670e0eea495SMark                     /* K = U * grad(f): g2 = e: i,A */
67152cdd6eaSMark                     ggg.gg2[d2] += U[d2][d3]*temp1[d3];
672e0eea495SMark                     /* D = -U * (I \kron (fx)): g3 = f: i,j,A */
67352cdd6eaSMark                     ggg.gg3[d2][d3] += U[d2][d3]*temp2;
674e0eea495SMark                   }
675e0eea495SMark                 }
676e0eea495SMark #endif
67752cdd6eaSMark               }, Kokkos::Sum<landau_inner_red::TensorValueType>(gg_temp));
67852cdd6eaSMark             // add alpha and put in gg2/3
6798fdabdddSMark Adams             Kokkos::parallel_for(Kokkos::ThreadVectorRange (team, (int)loc_Nf), [&] (const int& fieldA) {
68052cdd6eaSMark                 PetscInt d2,d3;
68152cdd6eaSMark                 for (d2 = 0; d2 < dim; d2++) {
6828a6f2e61SMark Adams                   gg2(d2,fieldA,myQi) = gg_temp.gg2[d2]*d_alpha[fieldA+f_off];
68352cdd6eaSMark                   for (d3 = 0; d3 < dim; d3++) {
6848a6f2e61SMark Adams                     gg3(d2,d3,fieldA,myQi) = -gg_temp.gg3[d2][d3]*d_alpha[fieldA+f_off]*d_invMass[fieldA+f_off];
68552cdd6eaSMark                   }
68652cdd6eaSMark                 }
687e0eea495SMark               });
68852cdd6eaSMark             /* add electric field term once per IP */
6898fdabdddSMark Adams             Kokkos::parallel_for(Kokkos::ThreadVectorRange (team, (int)loc_Nf), [&] (const int& fieldA) {
6908a6f2e61SMark Adams                 gg2(dim-1,fieldA,myQi) += d_Eq_m[fieldA+f_off];
69152cdd6eaSMark               });
6928fdabdddSMark Adams             Kokkos::parallel_for(Kokkos::ThreadVectorRange (team, (int)loc_Nf), [=] (const int& fieldA) {
693e0eea495SMark                 int d,d2,d3,dp;
694e0eea495SMark                 /* Jacobian transform - g2, g3 - per thread (2D) */
695e0eea495SMark                 for (d = 0; d < dim; ++d) {
69652cdd6eaSMark                   g2(d,fieldA,myQi) = 0;
697e0eea495SMark                   for (d2 = 0; d2 < dim; ++d2) {
6988fdabdddSMark Adams                     g2(d,fieldA,myQi) += invJ[d*dim+d2]*gg2(d2,fieldA,myQi);
69952cdd6eaSMark                     g3(d,d2,fieldA,myQi) = 0;
700e0eea495SMark                     for (d3 = 0; d3 < dim; ++d3) {
701e0eea495SMark                       for (dp = 0; dp < dim; ++dp) {
7028fdabdddSMark Adams                         g3(d,d2,fieldA,myQi) += invJ[d*dim + d3]*gg3(d3,dp,fieldA,myQi)*invJ[d2*dim + dp];
703e0eea495SMark                       }
704e0eea495SMark                     }
70552cdd6eaSMark                     g3(d,d2,fieldA,myQi) *= wj;
706e0eea495SMark                   }
70752cdd6eaSMark                   g2(d,fieldA,myQi) *= wj;
708e0eea495SMark                 }
709e0eea495SMark               });
71052cdd6eaSMark           }); // Nq
711e0eea495SMark         team.team_barrier();
7121eec90e4SMark Adams         { /* assemble */
7138fdabdddSMark Adams           for (PetscInt fieldA = 0; fieldA < loc_Nf; fieldA++) {
714930e68a5SMark Adams             /* assemble */
7151eec90e4SMark Adams             Kokkos::parallel_for(Kokkos::TeamThreadRange(team,0,Nb), [=] (int f) {
7161eec90e4SMark Adams                 Kokkos::parallel_for(Kokkos::ThreadVectorRange(team,0,Nb), [=] (int g) {
7171eec90e4SMark Adams                     PetscScalar t = 0;
7181eec90e4SMark Adams                     for (int qj = 0 ; qj < Nq ; qj++) { // look at others integration points
719e0eea495SMark                       const PetscReal *BJq = &d_BB[qj*Nb], *DIq = &d_DD[qj*Nb*dim];
7201eec90e4SMark Adams                       for (int d = 0; d < dim; ++d) {
7211eec90e4SMark Adams                         t += DIq[f*dim+d]*g2(d,fieldA,qj)*BJq[g];
7221eec90e4SMark Adams                         for (int d2 = 0; d2 < dim; ++d2) {
7231eec90e4SMark Adams                           t += DIq[f*dim + d]*g3(d,d2,fieldA,qj)*DIq[g*dim + d2];
724e0eea495SMark                         }
725e0eea495SMark                       }
726930e68a5SMark Adams                     }
7278a6f2e61SMark Adams                     if (elem_mat_num_cells_max_grid) { // CPU assembly
7281eec90e4SMark Adams                       const PetscInt fOff = (fieldA*Nb + f)*totDim + fieldA*Nb + g;
7298fdabdddSMark Adams                       d_elem_mats(b_id,grid,loc_elem,fOff) = t;
73019be780dSMark Adams                     } else {
731cada7fc7SMark Adams                       landau_mat_assemble (d_mat, d_coo_vals, t, f, g, Nb, moffset, loc_elem, fieldA, maps[grid], d_coo_elem_offsets, d_coo_elem_fullNb, d_coo_elem_point_offsets, b_elem_idx, b_id*coo_sz_batch);
73219be780dSMark Adams                     }
7331eec90e4SMark Adams                   });
7341eec90e4SMark Adams               });
7351eec90e4SMark Adams           }
736a587d139SMark         }
73719be780dSMark Adams       } // scope with 'grid'
73881451871SMark Adams     };
7399566063dSJacob Faibussowitsch     PetscCall(PetscLogEventBegin(events[4],0,0,0,0));
7409566063dSJacob Faibussowitsch     PetscCall(PetscLogGpuTimeBegin());
741ad4b5651SMark Adams     const int scr_bytes = 2*(g2_scr_t::shmem_size(dim,Nf_max,Nq) + g3_scr_t::shmem_size(dim,dim,Nf_max,Nq));
742dbabbaf5SMark Adams     PetscCall(PetscInfo(plex[0], "Jacobian shared memory size: %d bytes in level %d num cells total=%d team size=%d vector size=%d #face=%d Nf_max=%d\n",scr_bytes,KOKKOS_SHARED_LEVEL,num_cells_batch*batch_sz,team_size,vector_size,nfaces,Nf_max));
743dbabbaf5SMark Adams     Kokkos::parallel_for("Jacobian", Kokkos::TeamPolicy<>(num_cells_batch*batch_sz, team_size, vector_size).set_scratch_size(KOKKOS_SHARED_LEVEL, Kokkos::PerTeam(scr_bytes)), jac_lambda);
7449566063dSJacob Faibussowitsch     PetscCall(PetscLogGpuTimeEnd());
7459566063dSJacob Faibussowitsch     PetscCall(PetscLogEventEnd(events[4],0,0,0,0));
74619be780dSMark Adams     if (d_vertex_f_k) delete d_vertex_f_k;
747dbabbaf5SMark Adams   } else { // mass
7489566063dSJacob Faibussowitsch     PetscCall(PetscLogEventBegin(events[16],0,0,0,0));
7499566063dSJacob Faibussowitsch     PetscCall(PetscLogGpuTimeBegin());
750dbabbaf5SMark Adams     PetscCall(PetscInfo(plex[0], "Mass team size=%d vector size=%d #face=%d Nb=%" PetscInt_FMT ", %s assembly\n",team_size,vector_size,nfaces,Nb, d_coo_vals ? "COO" : "CSR"));
751*a31f6053SMark Adams     Kokkos::parallel_for("Mass", Kokkos::TeamPolicy<>(num_cells_batch*batch_sz, team_size, vector_size), KOKKOS_LAMBDA (const team_member team) {
7528fdabdddSMark Adams         const PetscInt  b_Nelem = d_elem_offset[num_grids], b_elem_idx = team.league_rank()%b_Nelem, b_id = team.league_rank()/b_Nelem;
7538a6f2e61SMark Adams         // find my grid
7548fdabdddSMark Adams         PetscInt grid = 0;
7558fdabdddSMark Adams         while (b_elem_idx >= d_elem_offset[grid+1]) grid++;
7568a6f2e61SMark Adams         {
7578fdabdddSMark Adams           const PetscInt loc_Nf = d_species_offset[grid+1]-d_species_offset[grid], loc_elem = b_elem_idx - d_elem_offset[grid], totDim = loc_Nf*Nq, jpidx_0 = d_ip_offset[grid] + loc_elem * Nq;
7588fdabdddSMark Adams           const PetscInt moffset = LAND_MOFFSET(b_id,grid,batch_sz,num_grids,d_mat_offset);
7598fdabdddSMark Adams           for (int fieldA = 0; fieldA < loc_Nf; fieldA++) {
7601eec90e4SMark Adams             /* assemble */
7611eec90e4SMark Adams             Kokkos::parallel_for(Kokkos::TeamThreadRange(team,0,Nb), [=] (int f) {
7621eec90e4SMark Adams                 Kokkos::parallel_for(Kokkos::ThreadVectorRange(team,0,Nb), [=] (int g) {
7631eec90e4SMark Adams                     PetscScalar    t = 0;
7641eec90e4SMark Adams                     for (int qj = 0 ; qj < Nq ; qj++) { // look at others integration points
7651eec90e4SMark Adams                       const PetscReal *BJq = &d_BB[qj*Nb];
7668fdabdddSMark Adams                       const PetscInt jpidx_glb = jpidx_0 + qj;
7678a6f2e61SMark Adams                       if (dim==2) {
7688fdabdddSMark Adams                         t += BJq[f] * d_w_k(jpidx_glb) * shift * BJq[g] * 2. * PETSC_PI;
7698a6f2e61SMark Adams                       } else {
7708fdabdddSMark Adams                         t += BJq[f] * d_w_k(jpidx_glb) * shift * BJq[g];
7711eec90e4SMark Adams                       }
7728a6f2e61SMark Adams                     }
7738a6f2e61SMark Adams                     if (elem_mat_num_cells_max_grid) {
7741eec90e4SMark Adams                       const PetscInt fOff = (fieldA*Nb + f)*totDim + fieldA*Nb + g;
7758fdabdddSMark Adams                       d_elem_mats(b_id,grid,loc_elem,fOff) = t;
776ad4b5651SMark Adams                     } else {
777cada7fc7SMark Adams                       landau_mat_assemble (d_mat, d_coo_vals, t, f, g, Nb, moffset, loc_elem, fieldA, maps[grid], d_coo_elem_offsets, d_coo_elem_fullNb, d_coo_elem_point_offsets, b_elem_idx, b_id*coo_sz_batch);
778ad4b5651SMark Adams                     }
779e0eea495SMark                   });
780e0eea495SMark               });
78113241b68SMark Adams           } // field
78213241b68SMark Adams         } // grid
7831eec90e4SMark Adams       });
7849566063dSJacob Faibussowitsch     PetscCall(PetscLogGpuTimeEnd());
7859566063dSJacob Faibussowitsch     PetscCall(PetscLogEventEnd(events[16],0,0,0,0));
7861eec90e4SMark Adams   }
787e8d2b73aSMark Adams   Kokkos::fence();
788bfc784b7SMark Adams   if (d_coo_vals) {
7899566063dSJacob Faibussowitsch     PetscCall(MatSetValuesCOO(JacP,d_coo_vals,ADD_VALUES));
790bfc784b7SMark Adams   } else if (elem_mat_num_cells_max_grid) { // CPU assembly
7918fdabdddSMark Adams     Kokkos::View<PetscScalar****, Kokkos::LayoutRight>::HostMirror h_elem_mats = Kokkos::create_mirror_view(d_elem_mats);
792e0eea495SMark     Kokkos::deep_copy (h_elem_mats, d_elem_mats);
793d618d24fSMark Adams      PetscCheck(!container,PETSC_COMM_SELF, PETSC_ERR_PLIB, "?????");
7948fdabdddSMark Adams     for (PetscInt b_id = 0 ; b_id < batch_sz ; b_id++) { // OpenMP (once)
7958a6f2e61SMark Adams       for (PetscInt grid=0 ; grid<num_grids ; grid++) {
7968a6f2e61SMark Adams         PetscSection      section, globalSection;
7978a6f2e61SMark Adams         PetscInt          cStart,cEnd;
7988fdabdddSMark Adams         Mat               B = subJ[ LAND_PACK_IDX(b_id,grid) ];
7998fdabdddSMark Adams         PetscInt          moffset = LAND_MOFFSET(b_id,grid,batch_sz,num_grids,a_mat_offset), nloc, nzl, colbuf[1024], row;
8008fdabdddSMark Adams         const PetscInt    *cols;
8018fdabdddSMark Adams         const PetscScalar *vals;
8029566063dSJacob Faibussowitsch         PetscCall(PetscLogEventBegin(events[5],0,0,0,0));
8039566063dSJacob Faibussowitsch         PetscCall(DMPlexGetHeightStratum(plex[grid],0,&cStart,&cEnd));
8049566063dSJacob Faibussowitsch         PetscCall(DMGetLocalSection(plex[grid], &section));
8059566063dSJacob Faibussowitsch         PetscCall(DMGetGlobalSection(plex[grid], &globalSection));
8069566063dSJacob Faibussowitsch         PetscCall(PetscLogEventEnd(events[5],0,0,0,0));
8079566063dSJacob Faibussowitsch         PetscCall(PetscLogEventBegin(events[6],0,0,0,0));
8088a6f2e61SMark Adams         for (PetscInt ej = cStart ; ej < cEnd; ++ej) {
8098fdabdddSMark Adams           const PetscScalar *elMat = &h_elem_mats(b_id,grid,ej-cStart,0);
8109566063dSJacob Faibussowitsch           PetscCall(DMPlexMatSetClosure(plex[grid], section, globalSection, B, ej, elMat, ADD_VALUES));
8118a6f2e61SMark Adams           if (grid==0 && ej==-1) {
8128fdabdddSMark Adams             const PetscInt  loc_Nf = a_species_offset[grid+1]-a_species_offset[grid], totDim = loc_Nf*Nq;
813e0eea495SMark             int d,f;
8148a6f2e61SMark Adams             PetscPrintf(PETSC_COMM_SELF,"Kokkos Element matrix %d/%d\n",1,(int)a_numCells[grid]);
815e0eea495SMark             for (d = 0; d < totDim; ++d){
81652cdd6eaSMark               for (f = 0; f < totDim; ++f) PetscPrintf(PETSC_COMM_SELF," %12.5e",  PetscRealPart(elMat[d*totDim + f]));
81752cdd6eaSMark               PetscPrintf(PETSC_COMM_SELF,"\n");
818e0eea495SMark             }
819e8d2b73aSMark Adams             exit(14);
820e0eea495SMark           }
821e0eea495SMark         }
8228fdabdddSMark Adams         // move nest matrix to global JacP
8239566063dSJacob Faibussowitsch         PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
8249566063dSJacob Faibussowitsch         PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
8259566063dSJacob Faibussowitsch         PetscCall(MatGetSize(B, &nloc, NULL));
8268a6f2e61SMark Adams         for (int i=0 ; i<nloc ; i++) {
8279566063dSJacob Faibussowitsch           PetscCall(MatGetRow(B,i,&nzl,&cols,&vals));
82863a3b9bcSJacob Faibussowitsch           PetscCheck(nzl<=1024,PetscObjectComm((PetscObject) B), PETSC_ERR_PLIB, "Row too big: %" PetscInt_FMT,nzl);
8298a6f2e61SMark Adams           for (int j=0; j<nzl; j++) colbuf[j] = cols[j] + moffset;
8308a6f2e61SMark Adams           row = i + moffset;
8319566063dSJacob Faibussowitsch           PetscCall(MatSetValues(JacP,1,&row,nzl,colbuf,vals,ADD_VALUES));
8329566063dSJacob Faibussowitsch           PetscCall(MatRestoreRow(B,i,&nzl,&cols,&vals));
8338a6f2e61SMark Adams         }
8349566063dSJacob Faibussowitsch         PetscCall(MatDestroy(&subJ[ LAND_PACK_IDX(b_id,grid) ]));
8359566063dSJacob Faibussowitsch         PetscCall(PetscLogEventEnd(events[6],0,0,0,0));
8368a6f2e61SMark Adams       } // grids
837a587d139SMark     }
8388fdabdddSMark Adams   }
839e0eea495SMark   PetscFunctionReturn(0);
840e0eea495SMark }
841e0eea495SMark } // extern "C"
842