1e0eea495SMark /* 2e0eea495SMark Implements the Kokkos kernel 3e0eea495SMark */ 4e0eea495SMark #include <petscconf.h> 511d22bbfSJunchao Zhang #include <petscvec_kokkos.hpp> 6e0eea495SMark #include <petsc/private/dmpleximpl.h> /*I "petscdmplex.h" I*/ 7e0eea495SMark #include <petsclandau.h> 8e0eea495SMark #include <petscts.h> 9a587d139SMark 10e0eea495SMark #include <Kokkos_Core.hpp> 11e0eea495SMark #include <cstdio> 12e0eea495SMark typedef Kokkos::TeamPolicy<>::member_type team_member; 13e0eea495SMark #include "../land_tensors.h" 14a587d139SMark #include <petscaijdevice.h> 15e0eea495SMark 16e0eea495SMark namespace landau_inner_red { // namespace helps with name resolution in reduction identity 1752cdd6eaSMark template< class ScalarType > 18e0eea495SMark struct array_type { 1952cdd6eaSMark ScalarType gg2[LANDAU_DIM]; 2052cdd6eaSMark ScalarType gg3[LANDAU_DIM][LANDAU_DIM]; 21e0eea495SMark 22e0eea495SMark KOKKOS_INLINE_FUNCTION // Default constructor - Initialize to 0's 23e0eea495SMark array_type() { 24e0eea495SMark for (int j = 0; j < LANDAU_DIM; j++) { 2552cdd6eaSMark gg2[j] = 0; 26e0eea495SMark for (int k = 0; k < LANDAU_DIM; k++) { 2752cdd6eaSMark gg3[j][k] = 0; 28e0eea495SMark } 29e0eea495SMark } 30e0eea495SMark } 31e0eea495SMark KOKKOS_INLINE_FUNCTION // Copy Constructor 32e0eea495SMark array_type(const array_type & rhs) { 33e0eea495SMark for (int j = 0; j < LANDAU_DIM; j++) { 3452cdd6eaSMark gg2[j] = rhs.gg2[j]; 35e0eea495SMark for (int k = 0; k < LANDAU_DIM; k++) { 3652cdd6eaSMark gg3[j][k] = rhs.gg3[j][k]; 37e0eea495SMark } 38e0eea495SMark } 39e0eea495SMark } 40e0eea495SMark KOKKOS_INLINE_FUNCTION // add operator 4170a7d78aSStefano Zampini array_type& operator += (const array_type& src) 4270a7d78aSStefano Zampini { 43e0eea495SMark for (int j = 0; j < LANDAU_DIM; j++) { 4452cdd6eaSMark gg2[j] += src.gg2[j]; 45e0eea495SMark for (int k = 0; k < LANDAU_DIM; k++) { 4652cdd6eaSMark gg3[j][k] += src.gg3[j][k]; 47e0eea495SMark } 48e0eea495SMark } 49e0eea495SMark return *this; 50e0eea495SMark } 51e0eea495SMark KOKKOS_INLINE_FUNCTION // volatile add operator 5270a7d78aSStefano Zampini void operator += (const volatile array_type& src) volatile 5370a7d78aSStefano Zampini { 54e0eea495SMark for (int j = 0; j < LANDAU_DIM; j++) { 5552cdd6eaSMark gg2[j] += src.gg2[j]; 56e0eea495SMark for (int k = 0; k < LANDAU_DIM; k++) { 5752cdd6eaSMark gg3[j][k] += src.gg3[j][k]; 58e0eea495SMark } 59e0eea495SMark } 60e0eea495SMark } 61e0eea495SMark }; 6252cdd6eaSMark typedef array_type<PetscReal> TensorValueType; // used to simplify code below 63e0eea495SMark } 64e0eea495SMark 65e0eea495SMark namespace Kokkos { //reduction identity must be defined in Kokkos namespace 66e0eea495SMark template<> 6752cdd6eaSMark struct reduction_identity< landau_inner_red::TensorValueType > { 6852cdd6eaSMark KOKKOS_FORCEINLINE_FUNCTION static landau_inner_red::TensorValueType sum() { 6952cdd6eaSMark return landau_inner_red::TensorValueType(); 70e0eea495SMark } 71e0eea495SMark }; 72e0eea495SMark } 73e0eea495SMark 74e0eea495SMark extern "C" { 758a6f2e61SMark Adams PetscErrorCode LandauKokkosCreateMatMaps(P4estVertexMaps maps[], pointInterpolationP4est (*pointMaps)[LANDAU_MAX_Q_FACE], PetscInt Nf[], PetscInt Nq, PetscInt grid) 76a587d139SMark { 77a587d139SMark P4estVertexMaps h_maps; /* host container */ 788a6f2e61SMark Adams const Kokkos::View<pointInterpolationP4est*[LANDAU_MAX_Q_FACE], Kokkos::LayoutRight, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_points ((pointInterpolationP4est*)pointMaps, maps[grid].num_reduced); 798a6f2e61SMark Adams const Kokkos::View< LandauIdx*[LANDAU_MAX_SPECIES][LANDAU_MAX_NQ], Kokkos::LayoutRight, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_gidx ((LandauIdx*)maps[grid].gIdx, maps[grid].num_elements); 808a6f2e61SMark Adams Kokkos::View<pointInterpolationP4est*[LANDAU_MAX_Q_FACE], Kokkos::LayoutRight> *d_points = new Kokkos::View<pointInterpolationP4est*[LANDAU_MAX_Q_FACE], Kokkos::LayoutRight>("points", maps[grid].num_reduced); 818a6f2e61SMark Adams Kokkos::View<LandauIdx*[LANDAU_MAX_SPECIES][LANDAU_MAX_NQ], Kokkos::LayoutRight> *d_gidx = new Kokkos::View<LandauIdx*[LANDAU_MAX_SPECIES][LANDAU_MAX_NQ], Kokkos::LayoutRight>("gIdx", maps[grid].num_elements); 82a587d139SMark 83a587d139SMark PetscFunctionBegin; 84a587d139SMark Kokkos::deep_copy (*d_gidx, h_gidx); 85a587d139SMark Kokkos::deep_copy (*d_points, h_points); 868a6f2e61SMark Adams h_maps.num_elements = maps[grid].num_elements; 878a6f2e61SMark Adams h_maps.num_face = maps[grid].num_face; 888a6f2e61SMark Adams h_maps.num_reduced = maps[grid].num_reduced; 898a6f2e61SMark Adams h_maps.deviceType = maps[grid].deviceType; 908a6f2e61SMark Adams h_maps.numgrids = maps[grid].numgrids; 918a6f2e61SMark Adams h_maps.Nf = Nf[grid]; 92a587d139SMark h_maps.Nq = Nq; 93a587d139SMark h_maps.c_maps = (pointInterpolationP4est (*)[LANDAU_MAX_Q_FACE]) d_points->data(); 948a6f2e61SMark Adams maps[grid].vp1 = (void*)d_points; 95a587d139SMark h_maps.gIdx = (LandauIdx (*)[LANDAU_MAX_SPECIES][LANDAU_MAX_NQ]) d_gidx->data(); 968a6f2e61SMark Adams maps[grid].vp2 = (void*)d_gidx; 97a587d139SMark { 98a587d139SMark Kokkos::View<P4estVertexMaps, Kokkos::HostSpace> h_maps_k(&h_maps); 9911d22bbfSJunchao Zhang Kokkos::View<P4estVertexMaps> *d_maps_k = new Kokkos::View<P4estVertexMaps>(Kokkos::create_mirror(Kokkos::DefaultExecutionSpace::memory_space(),h_maps_k)); 100a587d139SMark Kokkos::deep_copy (*d_maps_k, h_maps_k); 1018a6f2e61SMark Adams maps[grid].d_self = d_maps_k->data(); 1028a6f2e61SMark Adams maps[grid].vp3 = (void*)d_maps_k; 103a587d139SMark } 104a587d139SMark PetscFunctionReturn(0); 105a587d139SMark } 1068a6f2e61SMark Adams PetscErrorCode LandauKokkosDestroyMatMaps(P4estVertexMaps maps[], PetscInt num_grids) 107a587d139SMark { 108362febeeSStefano Zampini PetscFunctionBegin; 1098a6f2e61SMark Adams for (PetscInt grid=0;grid<num_grids;grid++) { 1108a6f2e61SMark Adams auto a = static_cast<Kokkos::View<pointInterpolationP4est*[LANDAU_MAX_Q_FACE], Kokkos::LayoutRight>*>(maps[grid].vp1); 1118a6f2e61SMark Adams auto b = static_cast<Kokkos::View<LandauIdx*[LANDAU_MAX_SPECIES][LANDAU_MAX_NQ], Kokkos::LayoutRight>*>(maps[grid].vp2); 1128a6f2e61SMark Adams auto c = static_cast<Kokkos::View<P4estVertexMaps*>*>(maps[grid].vp3); 113a587d139SMark delete a; delete b; delete c; 1148a6f2e61SMark Adams } 115a587d139SMark PetscFunctionReturn(0); 116a587d139SMark } 117a587d139SMark 1188fdabdddSMark Adams PetscErrorCode LandauKokkosStaticDataSet(DM plex, const PetscInt Nq, const PetscInt batch_sz, const PetscInt num_grids, 1198fdabdddSMark Adams PetscInt a_numCells[], PetscInt a_species_offset[], PetscInt a_mat_offset[], 1208a6f2e61SMark Adams PetscReal a_nu_alpha[], PetscReal a_nu_beta[], PetscReal a_invMass[], PetscReal a_invJ[], 1218a6f2e61SMark Adams PetscReal a_x[], PetscReal a_y[], PetscReal a_z[], PetscReal a_w[], LandauStaticData *SData_d) 122e0eea495SMark { 123e0eea495SMark PetscReal *BB,*DD; 124e8d2b73aSMark Adams PetscErrorCode ierr; 125e8d2b73aSMark Adams PetscTabulation *Tf; 1268a6f2e61SMark Adams PetscInt dim; 1278a6f2e61SMark Adams PetscInt Nb=Nq,ip_offset[LANDAU_MAX_GRIDS+1],ipf_offset[LANDAU_MAX_GRIDS+1],elem_offset[LANDAU_MAX_GRIDS+1],nip,IPf_sz,Nftot; 128e8d2b73aSMark Adams PetscDS prob; 129e0eea495SMark 130e0eea495SMark PetscFunctionBegin; 131e0eea495SMark ierr = DMGetDimension(plex, &dim);CHKERRQ(ierr); 132e0eea495SMark ierr = DMGetDS(plex, &prob);CHKERRQ(ierr); 1332c71b3e2SJacob Faibussowitsch PetscCheckFalse(LANDAU_DIM != dim,PETSC_COMM_WORLD, PETSC_ERR_PLIB, "dim %D != LANDAU_DIM %d",dim,LANDAU_DIM); 134e0eea495SMark ierr = PetscDSGetTabulation(prob, &Tf);CHKERRQ(ierr); 135e8d2b73aSMark Adams BB = Tf[0]->T[0]; DD = Tf[0]->T[1]; 1368a6f2e61SMark Adams ip_offset[0] = ipf_offset[0] = elem_offset[0] = 0; 1378a6f2e61SMark Adams nip = 0; 1388a6f2e61SMark Adams IPf_sz = 0; 1398a6f2e61SMark Adams for (PetscInt grid=0 ; grid<num_grids ; grid++) { 1408a6f2e61SMark Adams PetscInt nfloc = a_species_offset[grid+1] - a_species_offset[grid]; 1418a6f2e61SMark Adams elem_offset[grid+1] = elem_offset[grid] + a_numCells[grid]; 1428a6f2e61SMark Adams nip += a_numCells[grid]*Nq; 1438a6f2e61SMark Adams ip_offset[grid+1] = nip; 1448a6f2e61SMark Adams IPf_sz += Nq*nfloc*a_numCells[grid]; 1458a6f2e61SMark Adams ipf_offset[grid+1] = IPf_sz; 1468a6f2e61SMark Adams } 1478a6f2e61SMark Adams Nftot = a_species_offset[num_grids]; 148e8d2b73aSMark Adams ierr = PetscKokkosInitializeCheck();CHKERRQ(ierr); 149e8d2b73aSMark Adams { 1508a6f2e61SMark Adams const Kokkos::View<PetscReal*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_alpha (a_nu_alpha, Nftot); 1518a6f2e61SMark Adams auto alpha = new Kokkos::View<PetscReal*, Kokkos::LayoutLeft> ("alpha", Nftot); 152e8d2b73aSMark Adams SData_d->alpha = static_cast<void*>(alpha); 1538a6f2e61SMark Adams const Kokkos::View<PetscReal*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_beta (a_nu_beta, Nftot); 1548a6f2e61SMark Adams auto beta = new Kokkos::View<PetscReal*, Kokkos::LayoutLeft> ("beta", Nftot); 155e8d2b73aSMark Adams SData_d->beta = static_cast<void*>(beta); 1568a6f2e61SMark Adams const Kokkos::View<PetscReal*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_invMass (a_invMass,Nftot); 1578a6f2e61SMark Adams auto invMass = new Kokkos::View<PetscReal*, Kokkos::LayoutLeft> ("invMass", Nftot); 158e8d2b73aSMark Adams SData_d->invMass = static_cast<void*>(invMass); 159e8d2b73aSMark Adams const Kokkos::View<PetscReal*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_BB (BB,Nq*Nb); 160e8d2b73aSMark Adams auto B = new Kokkos::View<PetscReal*, Kokkos::LayoutLeft> ("B", Nq*Nb); 161e8d2b73aSMark Adams SData_d->B = static_cast<void*>(B); 162e8d2b73aSMark Adams const Kokkos::View<PetscReal*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_DD (DD,Nq*Nb*dim); 163e8d2b73aSMark Adams auto D = new Kokkos::View<PetscReal*, Kokkos::LayoutLeft> ("D", Nq*Nb*dim); 164e8d2b73aSMark Adams SData_d->D = static_cast<void*>(D); 165e8d2b73aSMark Adams const Kokkos::View<PetscReal*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_invJ (a_invJ, nip*dim*dim); 166e8d2b73aSMark Adams auto invJ = new Kokkos::View<PetscReal*, Kokkos::LayoutLeft> ("invJ", nip*dim*dim); 167e8d2b73aSMark Adams SData_d->invJ = static_cast<void*>(invJ); 168e8d2b73aSMark Adams const Kokkos::View<PetscReal*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_x (a_x, nip); 169e8d2b73aSMark Adams auto x = new Kokkos::View<PetscReal*, Kokkos::LayoutLeft> ("x", nip); 170e8d2b73aSMark Adams SData_d->x = static_cast<void*>(x); 171e8d2b73aSMark Adams const Kokkos::View<PetscReal*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_y (a_y, nip); 172e8d2b73aSMark Adams auto y = new Kokkos::View<PetscReal*, Kokkos::LayoutLeft> ("y", nip); 173e8d2b73aSMark Adams SData_d->y = static_cast<void*>(y); 174e8d2b73aSMark Adams const Kokkos::View<PetscReal*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_w (a_w, nip); 175e8d2b73aSMark Adams auto w = new Kokkos::View<PetscReal*, Kokkos::LayoutLeft> ("w", nip); 176e8d2b73aSMark Adams SData_d->w = static_cast<void*>(w); 177e8d2b73aSMark Adams 178e8d2b73aSMark Adams Kokkos::deep_copy (*alpha, h_alpha); 179e8d2b73aSMark Adams Kokkos::deep_copy (*beta, h_beta); 180e8d2b73aSMark Adams Kokkos::deep_copy (*invMass, h_invMass); 181e8d2b73aSMark Adams Kokkos::deep_copy (*B, h_BB); 182e8d2b73aSMark Adams Kokkos::deep_copy (*D, h_DD); 183e8d2b73aSMark Adams Kokkos::deep_copy (*invJ, h_invJ); 184e8d2b73aSMark Adams Kokkos::deep_copy (*x, h_x); 185e8d2b73aSMark Adams Kokkos::deep_copy (*y, h_y); 186e8d2b73aSMark Adams Kokkos::deep_copy (*w, h_w); 187e8d2b73aSMark Adams 1888a6f2e61SMark Adams if (dim==3) { 1898a6f2e61SMark Adams const Kokkos::View<PetscReal*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_z (a_z , dim==3 ? nip : 0); 1908a6f2e61SMark Adams auto z = new Kokkos::View<PetscReal*, Kokkos::LayoutLeft> ("z", nip); 1918a6f2e61SMark Adams SData_d->z = static_cast<void*>(z); 1928a6f2e61SMark Adams Kokkos::deep_copy (*z, h_z); 1938a6f2e61SMark Adams } else SData_d->z = NULL; 1948a6f2e61SMark Adams 1958a6f2e61SMark Adams // 1968a6f2e61SMark Adams const Kokkos::View<PetscInt*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_NCells (a_numCells, num_grids); 1978a6f2e61SMark Adams auto nc = new Kokkos::View<PetscInt*, Kokkos::LayoutLeft> ("NCells",num_grids); 1988a6f2e61SMark Adams SData_d->NCells = static_cast<void*>(nc); 1998a6f2e61SMark Adams Kokkos::deep_copy (*nc, h_NCells); 2008a6f2e61SMark Adams 2018a6f2e61SMark Adams const Kokkos::View<PetscInt*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_species_offset (a_species_offset, num_grids+1); 2028a6f2e61SMark Adams auto soff = new Kokkos::View<PetscInt*, Kokkos::LayoutLeft> ("species_offset",num_grids+1); 2038a6f2e61SMark Adams SData_d->species_offset = static_cast<void*>(soff); 2048a6f2e61SMark Adams Kokkos::deep_copy (*soff, h_species_offset); 2058a6f2e61SMark Adams 2068a6f2e61SMark Adams const Kokkos::View<PetscInt*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_mat_offset (a_mat_offset, num_grids+1); 2078a6f2e61SMark Adams auto moff = new Kokkos::View<PetscInt*, Kokkos::LayoutLeft> ("mat_offset",num_grids+1); 2088a6f2e61SMark Adams SData_d->mat_offset = static_cast<void*>(moff); 2098a6f2e61SMark Adams Kokkos::deep_copy (*moff, h_mat_offset); 2108a6f2e61SMark Adams 2118a6f2e61SMark Adams const Kokkos::View<PetscInt*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_ip_offset (ip_offset, num_grids+1); 2128a6f2e61SMark Adams auto ipoff = new Kokkos::View<PetscInt*, Kokkos::LayoutLeft> ("ip_offset",num_grids+1); 2138a6f2e61SMark Adams SData_d->ip_offset = static_cast<void*>(ipoff); 2148a6f2e61SMark Adams Kokkos::deep_copy (*ipoff, h_ip_offset); 2158a6f2e61SMark Adams 2168a6f2e61SMark Adams const Kokkos::View<PetscInt*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_elem_offset (elem_offset, num_grids+1); 2178a6f2e61SMark Adams auto eoff = new Kokkos::View<PetscInt*, Kokkos::LayoutLeft> ("elem_offset",num_grids+1); 2188a6f2e61SMark Adams SData_d->elem_offset = static_cast<void*>(eoff); 2198a6f2e61SMark Adams Kokkos::deep_copy (*eoff, h_elem_offset); 2208a6f2e61SMark Adams 2218a6f2e61SMark Adams const Kokkos::View<PetscInt*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_ipf_offset (ipf_offset, num_grids+1); 2228a6f2e61SMark Adams auto ipfoff = new Kokkos::View<PetscInt*, Kokkos::LayoutLeft> ("ipf_offset",num_grids+1); 2238a6f2e61SMark Adams SData_d->ipf_offset = static_cast<void*>(ipfoff); 2248a6f2e61SMark Adams Kokkos::deep_copy (*ipfoff, h_ipf_offset); 2258a6f2e61SMark Adams #if defined(LANDAU_LAYOUT_LEFT) // preallocate dynamic data, no copy 2268fdabdddSMark Adams auto ipfdf_data = new Kokkos::View<PetscReal***, Kokkos::LayoutLeft > ("fdf", batch_sz, dim+1, IPf_sz); 2278a6f2e61SMark Adams #else 2288fdabdddSMark Adams auto ipfdf_data = new Kokkos::View<PetscReal***, Kokkos::LayoutRight > ("fdf",batch_sz, dim+1, IPf_sz); 2298a6f2e61SMark Adams #endif 2308a6f2e61SMark Adams SData_d->ipfdf_data = static_cast<void*>(ipfdf_data); 2318fdabdddSMark Adams auto Eq_m = new Kokkos::View<PetscReal*, Kokkos::LayoutLeft> ("Eq_m",Nftot); // allocate but do not set, same for whole batch 232e8d2b73aSMark Adams SData_d->Eq_m = static_cast<void*>(Eq_m); 233e8d2b73aSMark Adams } 2348a6f2e61SMark Adams SData_d->maps = NULL; // not used 235e8d2b73aSMark Adams PetscFunctionReturn(0); 236e8d2b73aSMark Adams } 237e8d2b73aSMark Adams 2388a6f2e61SMark Adams PetscErrorCode LandauKokkosStaticDataClear(LandauStaticData *SData_d) 239e8d2b73aSMark Adams { 240e8d2b73aSMark Adams PetscFunctionBegin; 241e8d2b73aSMark Adams if (SData_d->alpha) { 242e8d2b73aSMark Adams auto alpha = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->alpha); 243e8d2b73aSMark Adams delete alpha; 2448a6f2e61SMark Adams SData_d->alpha = NULL; 245e8d2b73aSMark Adams auto beta = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->beta); 246e8d2b73aSMark Adams delete beta; 247e8d2b73aSMark Adams auto invMass = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->invMass); 248e8d2b73aSMark Adams delete invMass; 249e8d2b73aSMark Adams auto B = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->B); 250e8d2b73aSMark Adams delete B; 251e8d2b73aSMark Adams auto D = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->D); 252e8d2b73aSMark Adams delete D; 253e8d2b73aSMark Adams auto invJ = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->invJ); 254e8d2b73aSMark Adams delete invJ; 255e8d2b73aSMark Adams auto x = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->x); 256e8d2b73aSMark Adams delete x; 257e8d2b73aSMark Adams auto y = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->y); 258e8d2b73aSMark Adams delete y; 2598a6f2e61SMark Adams if (SData_d->z) { 260e8d2b73aSMark Adams auto z = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->z); 261e8d2b73aSMark Adams delete z; 2628a6f2e61SMark Adams } 2638a6f2e61SMark Adams #if defined(LANDAU_LAYOUT_LEFT) // preallocate dynamic data, no copy 2648fdabdddSMark Adams auto z = static_cast<Kokkos::View<PetscReal***, Kokkos::LayoutLeft>*>(SData_d->ipfdf_data); 2658a6f2e61SMark Adams #else 2668fdabdddSMark Adams auto z = static_cast<Kokkos::View<PetscReal***, Kokkos::LayoutRight>*>(SData_d->ipfdf_data); 2678a6f2e61SMark Adams #endif 2688a6f2e61SMark Adams delete z; 269e8d2b73aSMark Adams auto w = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->w); 270e8d2b73aSMark Adams delete w; 271e8d2b73aSMark Adams auto Eq_m = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->Eq_m); 272e8d2b73aSMark Adams delete Eq_m; 2738a6f2e61SMark Adams // offset 2748a6f2e61SMark Adams auto nc = static_cast<Kokkos::View<PetscInt*, Kokkos::LayoutLeft>*>(SData_d->NCells); 2758a6f2e61SMark Adams delete nc; 2768a6f2e61SMark Adams auto soff = static_cast<Kokkos::View<PetscInt*, Kokkos::LayoutLeft>*>(SData_d->species_offset); 2778a6f2e61SMark Adams delete soff; 2788a6f2e61SMark Adams auto moff = static_cast<Kokkos::View<PetscInt*, Kokkos::LayoutLeft>*>(SData_d->mat_offset); 2798a6f2e61SMark Adams delete moff; 2808a6f2e61SMark Adams auto ipoff = static_cast<Kokkos::View<PetscInt*, Kokkos::LayoutLeft>*>(SData_d->ip_offset); 2818a6f2e61SMark Adams delete ipoff; 2828a6f2e61SMark Adams auto eoff = static_cast<Kokkos::View<PetscInt*, Kokkos::LayoutLeft>*>(SData_d->elem_offset); 2838a6f2e61SMark Adams delete eoff; 2848a6f2e61SMark Adams auto ipfoff = static_cast<Kokkos::View<PetscInt*, Kokkos::LayoutLeft>*>(SData_d->ipf_offset); 2858a6f2e61SMark Adams delete ipfoff; 286af0767daSMark Adams } 287e8d2b73aSMark Adams PetscFunctionReturn(0); 288e8d2b73aSMark Adams } 289e8d2b73aSMark Adams 2908a6f2e61SMark Adams #define KOKKOS_SHARED_LEVEL 1 2918a6f2e61SMark Adams KOKKOS_INLINE_FUNCTION 292*ad4b5651SMark Adams PetscErrorCode landau_mat_assemble(PetscSplitCSRDataStructure d_mat, const PetscScalar Aij, const PetscInt f, const PetscInt g, const PetscInt Nb, 293*ad4b5651SMark Adams PetscInt moffset, const PetscInt elem, const PetscInt fieldA, const P4estVertexMaps *d_maps) 2948a6f2e61SMark Adams { 295*ad4b5651SMark Adams PetscInt idx,q,nr,nc,d; 2968a6f2e61SMark Adams const LandauIdx *const Idxs = &d_maps->gIdx[elem][fieldA][0]; 297*ad4b5651SMark Adams PetscScalar vals[LANDAU_MAX_Q_FACE*LANDAU_MAX_Q_FACE]={0},row_scale[LANDAU_MAX_Q_FACE]={0},col_scale[LANDAU_MAX_Q_FACE]={0}; 298*ad4b5651SMark Adams PetscInt rows[LANDAU_MAX_Q_FACE],cols[LANDAU_MAX_Q_FACE]; 299*ad4b5651SMark Adams idx = Idxs[f]; 3008a6f2e61SMark Adams if (idx >= 0) { 3018a6f2e61SMark Adams nr = 1; 302*ad4b5651SMark Adams rows[0] = idx; 303*ad4b5651SMark Adams row_scale[0] = 1.; 3048a6f2e61SMark Adams } else { 305*ad4b5651SMark Adams idx = -idx - 1; 306*ad4b5651SMark Adams for (q = 0, nr = 0; q < d_maps->num_face; q++, nr++) { 307*ad4b5651SMark Adams if (d_maps->c_maps[idx][q].gid < 0) break; 308*ad4b5651SMark Adams rows[q] = d_maps->c_maps[idx][q].gid; 309*ad4b5651SMark Adams row_scale[q] = d_maps->c_maps[idx][q].scale; 3108a6f2e61SMark Adams } 311*ad4b5651SMark Adams } 312*ad4b5651SMark Adams idx = Idxs[g]; 3138a6f2e61SMark Adams if (idx >= 0) { 3148a6f2e61SMark Adams nc = 1; 315*ad4b5651SMark Adams cols[0] = idx; 316*ad4b5651SMark Adams col_scale[0] = 1.; 3178a6f2e61SMark Adams } else { 318*ad4b5651SMark Adams idx = -idx - 1; 319*ad4b5651SMark Adams nc = d_maps->num_face; 320*ad4b5651SMark Adams for (q = 0, nc = 0; q < d_maps->num_face; q++, nc++) { 321*ad4b5651SMark Adams if (d_maps->c_maps[idx][q].gid < 0) break; 322*ad4b5651SMark Adams cols[q] = d_maps->c_maps[idx][q].gid; 323*ad4b5651SMark Adams col_scale[q] = d_maps->c_maps[idx][q].scale; 3248a6f2e61SMark Adams } 325*ad4b5651SMark Adams } 326*ad4b5651SMark Adams for (q = 0; q < nr; q++) rows[q] = rows[q] + moffset; 327*ad4b5651SMark Adams for (q = 0; q < nc; q++) cols[q] = cols[q] + moffset; 3288a6f2e61SMark Adams for (q = 0; q < nr; q++) { 3298a6f2e61SMark Adams for (d = 0; d < nc; d++) { 330*ad4b5651SMark Adams vals[q*nc + d] = row_scale[q]*col_scale[d]*Aij; 3318a6f2e61SMark Adams } 3328a6f2e61SMark Adams } 333*ad4b5651SMark Adams MatSetValuesDevice(d_mat,nr,rows,nc,cols,vals,ADD_VALUES); 334*ad4b5651SMark Adams 3358a6f2e61SMark Adams return 0; 3368a6f2e61SMark Adams } 3378a6f2e61SMark Adams 3388fdabdddSMark Adams PetscErrorCode LandauKokkosJacobian(DM plex[], const PetscInt Nq, const PetscInt batch_sz, const PetscInt num_grids, const PetscInt a_numCells[], PetscReal a_Eq_m[], PetscScalar a_elem_closure[], 339a82411e9SMark Adams const PetscScalar a_xarray[], const LandauStaticData *SData_d, const PetscInt num_sub_blocks, const PetscReal shift, 3408a6f2e61SMark Adams const PetscLogEvent events[], const PetscInt a_mat_offset[], const PetscInt a_species_offset[], Mat subJ[], Mat JacP) 341e8d2b73aSMark Adams { 342e8d2b73aSMark Adams using scr_mem_t = Kokkos::DefaultExecutionSpace::scratch_memory_space; 34319be780dSMark Adams using real2_scr_t = Kokkos::View<PetscScalar**, Kokkos::LayoutRight, scr_mem_t>; 344e8d2b73aSMark Adams using g2_scr_t = Kokkos::View<PetscReal***, Kokkos::LayoutRight, scr_mem_t>; 345e8d2b73aSMark Adams using g3_scr_t = Kokkos::View<PetscReal****, Kokkos::LayoutRight, scr_mem_t>; 346e8d2b73aSMark Adams PetscErrorCode ierr; 3478fdabdddSMark Adams PetscInt Nb=Nq,dim,num_cells_max,Nf_max,num_cells_batch; 3488a6f2e61SMark Adams int nfaces=0; 349e8d2b73aSMark Adams LandauCtx *ctx; 350e8d2b73aSMark Adams PetscReal *d_Eq_m=NULL; 3518a6f2e61SMark Adams PetscScalar *d_vertex_f=NULL; 3528a6f2e61SMark Adams P4estVertexMaps *maps[LANDAU_MAX_GRIDS]; // this gets captured 3538a6f2e61SMark Adams PetscSplitCSRDataStructure d_mat; 3548fdabdddSMark Adams PetscContainer container; 355bd08a171SMark Adams const int conc = Kokkos::DefaultExecutionSpace().concurrency(), openmp = !!(conc < 1000), team_size = (openmp==0) ? Nq : 1; 356e8d2b73aSMark Adams auto d_alpha_k = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->alpha); //static data 357e8d2b73aSMark Adams const PetscReal *d_alpha = d_alpha_k->data(); 3588a6f2e61SMark Adams const PetscInt Nftot = d_alpha_k->size(); // total number of species 359e8d2b73aSMark Adams auto d_beta_k = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->beta); 360e8d2b73aSMark Adams const PetscReal *d_beta = d_beta_k->data(); 361e8d2b73aSMark Adams auto d_invMass_k = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->invMass); 362e8d2b73aSMark Adams const PetscReal *d_invMass = d_invMass_k->data(); 363e8d2b73aSMark Adams auto d_B_k = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->B); 364e8d2b73aSMark Adams const PetscReal *d_BB = d_B_k->data(); 365e8d2b73aSMark Adams auto d_D_k = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->D); 366e8d2b73aSMark Adams const PetscReal *d_DD = d_D_k->data(); 367e8d2b73aSMark Adams auto d_invJ_k = *static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->invJ); // use Kokkos vector in kernels 368e8d2b73aSMark Adams auto d_x_k = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->x); //static data 369e8d2b73aSMark Adams const PetscReal *d_x = d_x_k->data(); 370e8d2b73aSMark Adams auto d_y_k = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->y); //static data 371e8d2b73aSMark Adams const PetscReal *d_y = d_y_k->data(); 372e8d2b73aSMark Adams auto d_z_k = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->z); //static data 3738a6f2e61SMark Adams const PetscReal *d_z = (LANDAU_DIM==3) ? d_z_k->data() : NULL; 3748a6f2e61SMark Adams auto d_w_k = *static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->w); //static data 3758a6f2e61SMark Adams const PetscReal *d_w = d_w_k.data(); 3768fdabdddSMark Adams // grid offsets - single vertex grid data 3778a6f2e61SMark Adams auto d_numCells_k = static_cast<Kokkos::View<PetscInt*, Kokkos::LayoutLeft>*>(SData_d->NCells); 3788a6f2e61SMark Adams const PetscInt *d_numCells = d_numCells_k->data(); 3798a6f2e61SMark Adams auto d_species_offset_k = static_cast<Kokkos::View<PetscInt*, Kokkos::LayoutLeft>*>(SData_d->species_offset); 3808a6f2e61SMark Adams const PetscInt *d_species_offset = d_species_offset_k->data(); 3818a6f2e61SMark Adams auto d_mat_offset_k = static_cast<Kokkos::View<PetscInt*, Kokkos::LayoutLeft>*>(SData_d->mat_offset); 3828a6f2e61SMark Adams const PetscInt *d_mat_offset = d_mat_offset_k->data(); 3838a6f2e61SMark Adams auto d_ip_offset_k = static_cast<Kokkos::View<PetscInt*, Kokkos::LayoutLeft>*>(SData_d->ip_offset); 3848a6f2e61SMark Adams const PetscInt *d_ip_offset = d_ip_offset_k->data(); 3858a6f2e61SMark Adams auto d_ipf_offset_k = static_cast<Kokkos::View<PetscInt*, Kokkos::LayoutLeft>*>(SData_d->ipf_offset); 3868a6f2e61SMark Adams const PetscInt *d_ipf_offset = d_ipf_offset_k->data(); 3878a6f2e61SMark Adams auto d_elem_offset_k = static_cast<Kokkos::View<PetscInt*, Kokkos::LayoutLeft>*>(SData_d->elem_offset); 3888a6f2e61SMark Adams const PetscInt *d_elem_offset = d_elem_offset_k->data(); 3898fdabdddSMark Adams #if defined(LANDAU_LAYOUT_LEFT) // preallocate dynamic data, including batched vertices 3908fdabdddSMark Adams Kokkos::View<PetscReal***, Kokkos::LayoutLeft > d_fdf_k = *static_cast<Kokkos::View<PetscReal***, Kokkos::LayoutLeft >*>(SData_d->ipfdf_data); 3918a6f2e61SMark Adams #else 3928fdabdddSMark Adams Kokkos::View<PetscReal***, Kokkos::LayoutRight > d_fdf_k = *static_cast<Kokkos::View<PetscReal***, Kokkos::LayoutRight >*>(SData_d->ipfdf_data); 3938a6f2e61SMark Adams #endif 3948fdabdddSMark Adams auto d_Eq_m_k = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->Eq_m); // static storage, dynamci data - E(t), copy later, single vertex 3958fdabdddSMark Adams 396e8d2b73aSMark Adams PetscFunctionBegin; 397e8d2b73aSMark Adams ierr = PetscLogEventBegin(events[3],0,0,0,0);CHKERRQ(ierr); 3988a6f2e61SMark Adams ierr = DMGetApplicationContext(plex[0], &ctx);CHKERRQ(ierr); 3992c71b3e2SJacob Faibussowitsch PetscCheckFalse(!ctx,PETSC_COMM_SELF, PETSC_ERR_PLIB, "no context"); 4008a6f2e61SMark Adams ierr = DMGetDimension(plex[0], &dim);CHKERRQ(ierr); 4012c71b3e2SJacob Faibussowitsch PetscCheckFalse(LANDAU_DIM != dim,PETSC_COMM_WORLD, PETSC_ERR_PLIB, "dim %D != LANDAU_DIM %d",dim,LANDAU_DIM); 402a587d139SMark if (ctx->gpu_assembly) { 403a587d139SMark ierr = PetscObjectQuery((PetscObject) JacP, "assembly_maps", (PetscObject *) &container);CHKERRQ(ierr); 404a587d139SMark if (container) { // not here first call 405a587d139SMark P4estVertexMaps *h_maps=NULL; 406a587d139SMark ierr = PetscContainerGetPointer(container, (void **) &h_maps);CHKERRQ(ierr); 4078a6f2e61SMark Adams for (PetscInt grid=0 ; grid<num_grids ; grid++) { 4088a6f2e61SMark Adams if (h_maps[grid].d_self) { 4098a6f2e61SMark Adams maps[grid] = h_maps[grid].d_self; 4108a6f2e61SMark Adams nfaces = h_maps[grid].num_face; // nface=0 for CPU assembly 411a587d139SMark } else { 412a587d139SMark SETERRQ(PETSC_COMM_SELF, PETSC_ERR_PLIB, "GPU assembly but no metadata in container"); 413a587d139SMark } 4148a6f2e61SMark Adams } 415a587d139SMark // this does the setup the first time called 416a587d139SMark ierr = MatKokkosGetDeviceMatWrite(JacP,&d_mat);CHKERRQ(ierr); 417a587d139SMark } else { // kernel output - first call assembled on device 4188a6f2e61SMark Adams for (PetscInt grid=0 ; grid<num_grids ; grid++) maps[grid] = NULL; 4198a6f2e61SMark Adams nfaces = 0; 4208fdabdddSMark Adams d_mat = NULL; 421a587d139SMark } 422a587d139SMark } else { 4238a6f2e61SMark Adams for (PetscInt grid=0 ; grid<num_grids ; grid++) maps[grid] = NULL; 4248a6f2e61SMark Adams nfaces = 0; 4258fdabdddSMark Adams d_mat = NULL; 4268fdabdddSMark Adams container = NULL; 427a587d139SMark } 4288fdabdddSMark Adams num_cells_batch = Nf_max = num_cells_max = 0; 4298a6f2e61SMark Adams for (PetscInt grid=0 ; grid<num_grids ; grid++) { 4308a6f2e61SMark Adams int Nfloc = a_species_offset[grid+1] - a_species_offset[grid]; 4318a6f2e61SMark Adams if (Nfloc > Nf_max) Nf_max = Nfloc; 4328a6f2e61SMark Adams if (a_numCells[grid] > num_cells_max) num_cells_max = a_numCells[grid]; 4338fdabdddSMark Adams num_cells_batch += a_numCells[grid]; // we don't have a host element offset here (but in ctx) 4348a6f2e61SMark Adams } 4358a6f2e61SMark Adams const PetscInt totDim_max = Nf_max*Nq, elem_mat_size_max = totDim_max*totDim_max; 4368a6f2e61SMark Adams const PetscInt elem_mat_num_cells_max_grid = container ? 0 : num_cells_max; 4378fdabdddSMark Adams Kokkos::View<PetscScalar****, Kokkos::LayoutRight> d_elem_mats("element matrices", batch_sz, num_grids, elem_mat_num_cells_max_grid, elem_mat_size_max); // first call have large set of global (Jac) element matrices 4388a6f2e61SMark Adams const Kokkos::View<PetscReal*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_Eq_m_k (a_Eq_m, Nftot); 4398a6f2e61SMark Adams if (a_elem_closure || a_xarray) { 440e8d2b73aSMark Adams Kokkos::deep_copy (*d_Eq_m_k, h_Eq_m_k); 441e8d2b73aSMark Adams d_Eq_m = d_Eq_m_k->data(); 4428a6f2e61SMark Adams } else d_Eq_m = NULL; 4438a6f2e61SMark Adams ierr = PetscKokkosInitializeCheck();CHKERRQ(ierr); 4448a6f2e61SMark Adams ierr = PetscLogEventEnd(events[3],0,0,0,0);CHKERRQ(ierr); 4458a6f2e61SMark Adams if (a_elem_closure || a_xarray) { // Jacobian, create f & df 4468a6f2e61SMark Adams Kokkos::View<PetscScalar*, Kokkos::LayoutLeft> *d_vertex_f_k = NULL; 4471eec90e4SMark Adams ierr = PetscLogEventBegin(events[1],0,0,0,0);CHKERRQ(ierr); 4488a6f2e61SMark Adams if (a_elem_closure) { 4498a6f2e61SMark Adams PetscInt closure_sz = 0; // argh, don't have this on the host!!! 4508a6f2e61SMark Adams for (PetscInt grid=0 ; grid<num_grids ; grid++) { 4518a6f2e61SMark Adams PetscInt nfloc = a_species_offset[grid+1] - a_species_offset[grid]; 4528a6f2e61SMark Adams closure_sz += Nq*nfloc*a_numCells[grid]; 4538a6f2e61SMark Adams } 4548fdabdddSMark Adams closure_sz *= batch_sz; 4558a6f2e61SMark Adams d_vertex_f_k = new Kokkos::View<PetscScalar*, Kokkos::LayoutLeft> ("closure",closure_sz); 4568a6f2e61SMark Adams const Kokkos::View<PetscScalar*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_closure_k (a_elem_closure, closure_sz); // Vertex data for each element 4578a6f2e61SMark Adams Kokkos::deep_copy (*d_vertex_f_k, h_closure_k); 4588a6f2e61SMark Adams d_vertex_f = d_vertex_f_k->data(); 459af0767daSMark Adams } else { 4608a6f2e61SMark Adams d_vertex_f = (PetscScalar*)a_xarray; 461af0767daSMark Adams } 462e8d2b73aSMark Adams ierr = PetscLogEventEnd(events[1],0,0,0,0);CHKERRQ(ierr); 463930e68a5SMark Adams ierr = PetscLogEventBegin(events[8],0,0,0,0);CHKERRQ(ierr); 464e6118d12SMark Adams ierr = PetscLogGpuTimeBegin();CHKERRQ(ierr); 46519be780dSMark Adams 46619be780dSMark Adams const int scr_bytes_fdf = real2_scr_t::shmem_size(Nf_max,Nb); 4677d3de750SJacob Faibussowitsch ierr = PetscInfo(plex[0], "Jacobian shared memory size: %d bytes in level %d num cells total=%D team size=%D #face=%D Nf_max=%D\n",scr_bytes_fdf,KOKKOS_SHARED_LEVEL,num_cells_batch*batch_sz,team_size,nfaces,Nf_max);CHKERRQ(ierr); 46819be780dSMark Adams Kokkos::parallel_for("f, df", Kokkos::TeamPolicy<>(num_cells_batch*batch_sz, team_size, /* Kokkos::AUTO */ 16).set_scratch_size(KOKKOS_SHARED_LEVEL, Kokkos::PerTeam(scr_bytes_fdf)), KOKKOS_LAMBDA (const team_member team) { 4698fdabdddSMark Adams const PetscInt b_Nelem = d_elem_offset[num_grids], b_elem_idx = team.league_rank()%b_Nelem, b_id = team.league_rank()/b_Nelem, IPf_sz_glb = d_ipf_offset[num_grids]; 4708a6f2e61SMark Adams // find my grid 4718fdabdddSMark Adams PetscInt grid = 0; 4728fdabdddSMark Adams while (b_elem_idx >= d_elem_offset[grid+1]) grid++; 4738a6f2e61SMark Adams { 4748fdabdddSMark Adams const PetscInt loc_nip = d_numCells[grid]*Nq, loc_Nf = d_species_offset[grid+1] - d_species_offset[grid], loc_elem = b_elem_idx - d_elem_offset[grid]; 4758fdabdddSMark Adams const PetscInt moffset = LAND_MOFFSET(b_id,grid,batch_sz,num_grids,d_mat_offset); 47619be780dSMark Adams { 47719be780dSMark Adams real2_scr_t s_coef_k(team.team_scratch(KOKKOS_SHARED_LEVEL),Nf_max,Nb); 47819be780dSMark Adams PetscScalar *coef; 4798fdabdddSMark Adams const PetscReal *invJe = &d_invJ_k((d_ip_offset[grid] + loc_elem*Nq)*dim*dim); 480a587d139SMark // un pack IPData 4818a6f2e61SMark Adams if (!maps[grid]) { 4828fdabdddSMark Adams coef = &d_vertex_f[b_id*IPf_sz_glb + d_ipf_offset[grid] + loc_elem*Nb*loc_Nf]; // closure and IP indexing are the same 483af0767daSMark Adams } else { 48419be780dSMark Adams coef = s_coef_k.data(); 48519be780dSMark Adams Kokkos::parallel_for(Kokkos::TeamThreadRange(team,0,(int)loc_Nf), [=] (int f) { 48619be780dSMark Adams //for (int f = 0; f < loc_Nf; ++f) { 48719be780dSMark Adams Kokkos::parallel_for(Kokkos::ThreadVectorRange(team,0,(int)Nb), [=] (int b) { 48819be780dSMark Adams //for (int b = 0; b < Nb; ++b) { 48919be780dSMark Adams LandauIdx idx = maps[grid]->gIdx[loc_elem][f][b]; 490af0767daSMark Adams if (idx >= 0) { 49119be780dSMark Adams coef[f*Nb+b] = d_vertex_f[idx+moffset]; // xarray data, not IP, need raw array to deal with CPU assemble case (not used) 492af0767daSMark Adams } else { 493af0767daSMark Adams idx = -idx - 1; 49419be780dSMark Adams coef[f*Nb+b] = 0; 4958a6f2e61SMark Adams for (int q = 0; q < maps[grid]->num_face; q++) { 4968a6f2e61SMark Adams PetscInt id = maps[grid]->c_maps[idx][q].gid; 4978a6f2e61SMark Adams PetscScalar scale = maps[grid]->c_maps[idx][q].scale; 498f26f10aaSMark Adams if (id >= 0) coef[f*Nb+b] += scale*d_vertex_f[id+moffset]; 499af0767daSMark Adams } 500af0767daSMark Adams } 50119be780dSMark Adams }); 50219be780dSMark Adams }); 503af0767daSMark Adams } 50419be780dSMark Adams team.team_barrier(); 505a587d139SMark Kokkos::parallel_for(Kokkos::TeamThreadRange(team,0,Nq), [=] (int myQi) { 5068fdabdddSMark Adams const PetscReal *const invJ = &invJe[myQi*dim*dim]; // b_elem_idx: batch element index 507a587d139SMark const PetscReal *Bq = &d_BB[myQi*Nb], *Dq = &d_DD[myQi*Nb*dim]; 5088fdabdddSMark Adams Kokkos::parallel_for(Kokkos::ThreadVectorRange(team,0,(int)loc_Nf), [=] (int f) { 509a587d139SMark PetscInt b, e, d; 510e8d2b73aSMark Adams PetscReal refSpaceDer[LANDAU_DIM]; 5118fdabdddSMark Adams const PetscInt idx = d_ipf_offset[grid] + f*loc_nip + loc_elem*Nq + myQi; 5128fdabdddSMark Adams d_fdf_k(b_id,0,idx) = 0.0; 513a587d139SMark for (d = 0; d < LANDAU_DIM; ++d) refSpaceDer[d] = 0.0; 514a587d139SMark for (b = 0; b < Nb; ++b) { 51519be780dSMark Adams d_fdf_k(b_id,0,idx) += Bq[b]*PetscRealPart(coef[f*Nb+b]); 51619be780dSMark Adams for (d = 0; d < dim; ++d) refSpaceDer[d] += Dq[b*dim+d]*PetscRealPart(coef[f*Nb+b]); 517a587d139SMark } 518a587d139SMark for (d = 0; d < dim; ++d) { 5198fdabdddSMark Adams for (e = 0, d_fdf_k(b_id,d+1,idx) = 0.0; e < dim; ++e) { 5208fdabdddSMark Adams d_fdf_k(b_id,d+1,idx) += invJ[e*dim+d]*refSpaceDer[e]; 521a587d139SMark } 522a587d139SMark } 5238a6f2e61SMark Adams }); // f 5248a6f2e61SMark Adams }); // myQi 5258a6f2e61SMark Adams } 52619be780dSMark Adams team.team_barrier(); 52719be780dSMark Adams } // 'grid' scope 5288a6f2e61SMark Adams }); // global elems - fdf 5298a6f2e61SMark Adams Kokkos::fence(); 5308a6f2e61SMark Adams ierr = PetscLogGpuTimeEnd();CHKERRQ(ierr); // is this a fence? 531930e68a5SMark Adams ierr = PetscLogEventEnd(events[8],0,0,0,0);CHKERRQ(ierr); 532e6118d12SMark Adams // Jacobian 53381451871SMark Adams auto jac_lambda = KOKKOS_LAMBDA (const team_member team) { 5348fdabdddSMark Adams const PetscInt b_Nelem = d_elem_offset[num_grids], b_elem_idx = team.league_rank()%b_Nelem, b_id = team.league_rank()/b_Nelem; 5358a6f2e61SMark Adams // find my grid 5368fdabdddSMark Adams PetscInt grid = 0; 5378fdabdddSMark Adams while (b_elem_idx >= d_elem_offset[grid+1]) grid++; 5388a6f2e61SMark Adams { 53919be780dSMark Adams const PetscInt loc_Nf = d_species_offset[grid+1]-d_species_offset[grid], loc_elem = b_elem_idx - d_elem_offset[grid]; 5408fdabdddSMark Adams const PetscInt moffset = LAND_MOFFSET(b_id,grid,batch_sz,num_grids,d_mat_offset); 54119be780dSMark Adams const PetscInt f_off = d_species_offset[grid], totDim = loc_Nf*Nq; 5428fdabdddSMark Adams g2_scr_t g2(team.team_scratch(KOKKOS_SHARED_LEVEL),dim,loc_Nf,Nq); 5438fdabdddSMark Adams g3_scr_t g3(team.team_scratch(KOKKOS_SHARED_LEVEL),dim,dim,loc_Nf,Nq); 5448fdabdddSMark Adams g2_scr_t gg2(team.team_scratch(KOKKOS_SHARED_LEVEL),dim,loc_Nf,Nq); 5458fdabdddSMark Adams g3_scr_t gg3(team.team_scratch(KOKKOS_SHARED_LEVEL),dim,dim,loc_Nf,Nq); 546e0eea495SMark // get g2[] & g3[] 547e0eea495SMark Kokkos::parallel_for(Kokkos::TeamThreadRange(team,0,Nq), [=] (int myQi) { 548e0eea495SMark using Kokkos::parallel_reduce; 5498fdabdddSMark Adams const PetscInt jpidx_glb = d_ip_offset[grid] + loc_elem * Nq + myQi; 5508fdabdddSMark Adams const PetscReal *invJ = &d_invJ_k(jpidx_glb*dim*dim); 5518fdabdddSMark Adams const PetscReal vj[3] = {d_x[jpidx_glb], d_y[jpidx_glb], d_z ? d_z[jpidx_glb] : 0}, wj = d_w[jpidx_glb]; 5528a6f2e61SMark Adams landau_inner_red::TensorValueType gg_temp; // reduce on part of gg2 and g33 for IP jpidx_g 5538fdabdddSMark Adams Kokkos::parallel_reduce(Kokkos::ThreadVectorRange (team, (int)d_ip_offset[num_grids]), [=] (const int& ipidx, landau_inner_red::TensorValueType & ggg) { 554e8d2b73aSMark Adams const PetscReal wi = d_w[ipidx], x = d_x[ipidx], y = d_y[ipidx]; 55552cdd6eaSMark PetscReal temp1[3] = {0, 0, 0}, temp2 = 0; 5568fdabdddSMark Adams PetscInt fieldA,d2,d3,f_off_r,grid_r,ipidx_g,nip_loc_r,loc_Nf_r; 557e0eea495SMark #if LANDAU_DIM==2 5588a6f2e61SMark Adams PetscReal Ud[2][2], Uk[2][2], mask = (PetscAbs(vj[0]-x) < 100*PETSC_SQRT_MACHINE_EPSILON && PetscAbs(vj[1]-y) < 100*PETSC_SQRT_MACHINE_EPSILON) ? 0. : 1.; 5598a6f2e61SMark Adams LandauTensor2D(vj, x, y, Ud, Uk, mask); 56052cdd6eaSMark #else 5617620afa1SMark Adams PetscReal U[3][3], z = d_z[ipidx], mask = (PetscAbs(vj[0]-x) < 100*PETSC_SQRT_MACHINE_EPSILON && PetscAbs(vj[1]-y) < 100*PETSC_SQRT_MACHINE_EPSILON && PetscAbs(vj[2]-z) < 100*PETSC_SQRT_MACHINE_EPSILON) ? 0. : 1.; 5628a6f2e61SMark Adams LandauTensor3D(vj, x, y, z, U, mask); 56352cdd6eaSMark #endif 5648a6f2e61SMark Adams grid_r = 0; 5658a6f2e61SMark Adams while (ipidx >= d_ip_offset[grid_r+1]) grid_r++; // yuck search for grid 5668a6f2e61SMark Adams f_off_r = d_species_offset[grid_r]; 5678a6f2e61SMark Adams ipidx_g = ipidx - d_ip_offset[grid_r]; 5688a6f2e61SMark Adams nip_loc_r = d_numCells[grid_r]*Nq; 5698fdabdddSMark Adams loc_Nf_r = d_species_offset[grid_r+1] - d_species_offset[grid_r]; 5708fdabdddSMark Adams for (fieldA = 0; fieldA < loc_Nf_r; ++fieldA) { 5718fdabdddSMark Adams const PetscInt idx = d_ipf_offset[grid_r] + fieldA*nip_loc_r + ipidx_g; 5728fdabdddSMark Adams temp1[0] += d_fdf_k(b_id,1,idx)*d_beta[fieldA+f_off_r]*d_invMass[fieldA+f_off_r]; 5738fdabdddSMark Adams temp1[1] += d_fdf_k(b_id,2,idx)*d_beta[fieldA+f_off_r]*d_invMass[fieldA+f_off_r]; 57452cdd6eaSMark #if LANDAU_DIM==3 5758fdabdddSMark Adams temp1[2] += d_fdf_k(b_id,3,idx)*d_beta[fieldA+f_off_r]*d_invMass[fieldA+f_off_r]; 57652cdd6eaSMark #endif 5778fdabdddSMark Adams temp2 += d_fdf_k(b_id,0,idx)*d_beta[fieldA+f_off_r]; 57852cdd6eaSMark } 57952cdd6eaSMark temp1[0] *= wi; 58052cdd6eaSMark temp1[1] *= wi; 58152cdd6eaSMark #if LANDAU_DIM==3 58252cdd6eaSMark temp1[2] *= wi; 58352cdd6eaSMark #endif 58452cdd6eaSMark temp2 *= wi; 58552cdd6eaSMark #if LANDAU_DIM==2 58652cdd6eaSMark for (d2 = 0; d2 < 2; d2++) { 587e0eea495SMark for (d3 = 0; d3 < 2; ++d3) { 588e0eea495SMark /* K = U * grad(f): g2=e: i,A */ 58952cdd6eaSMark ggg.gg2[d2] += Uk[d2][d3]*temp1[d3]; 590e0eea495SMark /* D = -U * (I \kron (fx)): g3=f: i,j,A */ 59152cdd6eaSMark ggg.gg3[d2][d3] += Ud[d2][d3]*temp2; 592e0eea495SMark } 593e0eea495SMark } 594e0eea495SMark #else 595e0eea495SMark for (d2 = 0; d2 < 3; ++d2) { 596e0eea495SMark for (d3 = 0; d3 < 3; ++d3) { 597e0eea495SMark /* K = U * grad(f): g2 = e: i,A */ 59852cdd6eaSMark ggg.gg2[d2] += U[d2][d3]*temp1[d3]; 599e0eea495SMark /* D = -U * (I \kron (fx)): g3 = f: i,j,A */ 60052cdd6eaSMark ggg.gg3[d2][d3] += U[d2][d3]*temp2; 601e0eea495SMark } 602e0eea495SMark } 603e0eea495SMark #endif 60452cdd6eaSMark }, Kokkos::Sum<landau_inner_red::TensorValueType>(gg_temp)); 60552cdd6eaSMark // add alpha and put in gg2/3 6068fdabdddSMark Adams Kokkos::parallel_for(Kokkos::ThreadVectorRange (team, (int)loc_Nf), [&] (const int& fieldA) { 60752cdd6eaSMark PetscInt d2,d3; 60852cdd6eaSMark for (d2 = 0; d2 < dim; d2++) { 6098a6f2e61SMark Adams gg2(d2,fieldA,myQi) = gg_temp.gg2[d2]*d_alpha[fieldA+f_off]; 61052cdd6eaSMark for (d3 = 0; d3 < dim; d3++) { 6118a6f2e61SMark Adams gg3(d2,d3,fieldA,myQi) = -gg_temp.gg3[d2][d3]*d_alpha[fieldA+f_off]*d_invMass[fieldA+f_off]; 61252cdd6eaSMark } 61352cdd6eaSMark } 614e0eea495SMark }); 61552cdd6eaSMark /* add electric field term once per IP */ 6168fdabdddSMark Adams Kokkos::parallel_for(Kokkos::ThreadVectorRange (team, (int)loc_Nf), [&] (const int& fieldA) { 6178a6f2e61SMark Adams gg2(dim-1,fieldA,myQi) += d_Eq_m[fieldA+f_off]; 61852cdd6eaSMark }); 6198fdabdddSMark Adams Kokkos::parallel_for(Kokkos::ThreadVectorRange (team, (int)loc_Nf), [=] (const int& fieldA) { 620e0eea495SMark int d,d2,d3,dp; 621e0eea495SMark /* Jacobian transform - g2, g3 - per thread (2D) */ 622e0eea495SMark for (d = 0; d < dim; ++d) { 62352cdd6eaSMark g2(d,fieldA,myQi) = 0; 624e0eea495SMark for (d2 = 0; d2 < dim; ++d2) { 6258fdabdddSMark Adams g2(d,fieldA,myQi) += invJ[d*dim+d2]*gg2(d2,fieldA,myQi); 62652cdd6eaSMark g3(d,d2,fieldA,myQi) = 0; 627e0eea495SMark for (d3 = 0; d3 < dim; ++d3) { 628e0eea495SMark for (dp = 0; dp < dim; ++dp) { 6298fdabdddSMark Adams g3(d,d2,fieldA,myQi) += invJ[d*dim + d3]*gg3(d3,dp,fieldA,myQi)*invJ[d2*dim + dp]; 630e0eea495SMark } 631e0eea495SMark } 63252cdd6eaSMark g3(d,d2,fieldA,myQi) *= wj; 633e0eea495SMark } 63452cdd6eaSMark g2(d,fieldA,myQi) *= wj; 635e0eea495SMark } 636e0eea495SMark }); 63752cdd6eaSMark }); // Nq 638e0eea495SMark team.team_barrier(); 6391eec90e4SMark Adams { /* assemble */ 6408fdabdddSMark Adams for (PetscInt fieldA = 0; fieldA < loc_Nf; fieldA++) { 641930e68a5SMark Adams /* assemble */ 6421eec90e4SMark Adams Kokkos::parallel_for(Kokkos::TeamThreadRange(team,0,Nb), [=] (int f) { 6431eec90e4SMark Adams Kokkos::parallel_for(Kokkos::ThreadVectorRange(team,0,Nb), [=] (int g) { 6441eec90e4SMark Adams PetscScalar t = 0; 6451eec90e4SMark Adams for (int qj = 0 ; qj < Nq ; qj++) { // look at others integration points 646e0eea495SMark const PetscReal *BJq = &d_BB[qj*Nb], *DIq = &d_DD[qj*Nb*dim]; 6471eec90e4SMark Adams for (int d = 0; d < dim; ++d) { 6481eec90e4SMark Adams t += DIq[f*dim+d]*g2(d,fieldA,qj)*BJq[g]; 6491eec90e4SMark Adams for (int d2 = 0; d2 < dim; ++d2) { 6501eec90e4SMark Adams t += DIq[f*dim + d]*g3(d,d2,fieldA,qj)*DIq[g*dim + d2]; 651e0eea495SMark } 652e0eea495SMark } 653930e68a5SMark Adams } 6548a6f2e61SMark Adams if (elem_mat_num_cells_max_grid) { // CPU assembly 6551eec90e4SMark Adams const PetscInt fOff = (fieldA*Nb + f)*totDim + fieldA*Nb + g; 6568fdabdddSMark Adams d_elem_mats(b_id,grid,loc_elem,fOff) = t; 65719be780dSMark Adams } else { 658*ad4b5651SMark Adams landau_mat_assemble (d_mat, t, f, g, Nb, moffset, loc_elem, fieldA, maps[grid]); 65919be780dSMark Adams } 6601eec90e4SMark Adams }); 6611eec90e4SMark Adams }); 6621eec90e4SMark Adams } 663a587d139SMark } 66419be780dSMark Adams } // scope with 'grid' 66581451871SMark Adams }; 66681451871SMark Adams ierr = PetscLogEventBegin(events[4],0,0,0,0);CHKERRQ(ierr); 66781451871SMark Adams ierr = PetscLogGpuTimeBegin();CHKERRQ(ierr); 668*ad4b5651SMark Adams const int scr_bytes = 2*(g2_scr_t::shmem_size(dim,Nf_max,Nq) + g3_scr_t::shmem_size(dim,dim,Nf_max,Nq)); 66981451871SMark Adams Kokkos::parallel_for("Jacobian", Kokkos::TeamPolicy<Kokkos::LaunchBounds<512,1>>(num_cells_batch*batch_sz, team_size, /* Kokkos::AUTO */ 16).set_scratch_size(KOKKOS_SHARED_LEVEL, Kokkos::PerTeam(scr_bytes)), jac_lambda); 670e6118d12SMark Adams ierr = PetscLogGpuTimeEnd();CHKERRQ(ierr); 6711eec90e4SMark Adams ierr = PetscLogEventEnd(events[4],0,0,0,0);CHKERRQ(ierr); 67219be780dSMark Adams if (d_vertex_f_k) delete d_vertex_f_k; 6731eec90e4SMark Adams } else { // mass 674e607c864SMark Adams ierr = PetscLogEventBegin(events[16],0,0,0,0);CHKERRQ(ierr); 675e6118d12SMark Adams ierr = PetscLogGpuTimeBegin();CHKERRQ(ierr); 676*ad4b5651SMark Adams ierr = PetscInfo(plex[0], "Mass shared memory size: level %d conc=%D team size=%D #face=%D Nb=%D\n",KOKKOS_SHARED_LEVEL,conc,team_size,nfaces,Nb);CHKERRQ(ierr); 677*ad4b5651SMark Adams Kokkos::parallel_for("Mass", Kokkos::TeamPolicy<>(num_cells_batch*batch_sz, team_size, /* Kokkos::AUTO */ 16), KOKKOS_LAMBDA (const team_member team) { 6788fdabdddSMark Adams const PetscInt b_Nelem = d_elem_offset[num_grids], b_elem_idx = team.league_rank()%b_Nelem, b_id = team.league_rank()/b_Nelem; 6798a6f2e61SMark Adams // find my grid 6808fdabdddSMark Adams PetscInt grid = 0; 6818fdabdddSMark Adams while (b_elem_idx >= d_elem_offset[grid+1]) grid++; 6828a6f2e61SMark Adams { 6838fdabdddSMark Adams const PetscInt loc_Nf = d_species_offset[grid+1]-d_species_offset[grid], loc_elem = b_elem_idx - d_elem_offset[grid], totDim = loc_Nf*Nq, jpidx_0 = d_ip_offset[grid] + loc_elem * Nq; 6848fdabdddSMark Adams const PetscInt moffset = LAND_MOFFSET(b_id,grid,batch_sz,num_grids,d_mat_offset); 6858fdabdddSMark Adams for (int fieldA = 0; fieldA < loc_Nf; fieldA++) { 6861eec90e4SMark Adams /* assemble */ 6871eec90e4SMark Adams Kokkos::parallel_for(Kokkos::TeamThreadRange(team,0,Nb), [=] (int f) { 6881eec90e4SMark Adams Kokkos::parallel_for(Kokkos::ThreadVectorRange(team,0,Nb), [=] (int g) { 6891eec90e4SMark Adams PetscScalar t = 0; 6901eec90e4SMark Adams for (int qj = 0 ; qj < Nq ; qj++) { // look at others integration points 6911eec90e4SMark Adams const PetscReal *BJq = &d_BB[qj*Nb]; 6928fdabdddSMark Adams const PetscInt jpidx_glb = jpidx_0 + qj; 6938a6f2e61SMark Adams if (dim==2) { 6948fdabdddSMark Adams t += BJq[f] * d_w_k(jpidx_glb) * shift * BJq[g] * 2. * PETSC_PI; 6958a6f2e61SMark Adams } else { 6968fdabdddSMark Adams t += BJq[f] * d_w_k(jpidx_glb) * shift * BJq[g]; 6971eec90e4SMark Adams } 6988a6f2e61SMark Adams } 6998a6f2e61SMark Adams if (elem_mat_num_cells_max_grid) { 7001eec90e4SMark Adams const PetscInt fOff = (fieldA*Nb + f)*totDim + fieldA*Nb + g; 7018fdabdddSMark Adams d_elem_mats(b_id,grid,loc_elem,fOff) = t; 702*ad4b5651SMark Adams } else { 703*ad4b5651SMark Adams landau_mat_assemble (d_mat, t, f, g, Nb, moffset, loc_elem, fieldA, maps[grid]); 704*ad4b5651SMark Adams } 705e0eea495SMark }); 706e0eea495SMark }); 7071eec90e4SMark Adams } 7081eec90e4SMark Adams } 7091eec90e4SMark Adams }); 710e6118d12SMark Adams ierr = PetscLogGpuTimeEnd();CHKERRQ(ierr); 711e607c864SMark Adams ierr = PetscLogEventEnd(events[16],0,0,0,0);CHKERRQ(ierr); 7121eec90e4SMark Adams } 713e8d2b73aSMark Adams Kokkos::fence(); 7148a6f2e61SMark Adams if (elem_mat_num_cells_max_grid) { // CPU assembly 7158fdabdddSMark Adams Kokkos::View<PetscScalar****, Kokkos::LayoutRight>::HostMirror h_elem_mats = Kokkos::create_mirror_view(d_elem_mats); 716e0eea495SMark Kokkos::deep_copy (h_elem_mats, d_elem_mats); 7172c71b3e2SJacob Faibussowitsch PetscCheckFalse(container,PETSC_COMM_SELF, PETSC_ERR_PLIB, "?????"); 7188fdabdddSMark Adams for (PetscInt b_id = 0 ; b_id < batch_sz ; b_id++) { // OpenMP (once) 7198a6f2e61SMark Adams for (PetscInt grid=0 ; grid<num_grids ; grid++) { 7208a6f2e61SMark Adams PetscSection section, globalSection; 7218a6f2e61SMark Adams PetscInt cStart,cEnd; 7228fdabdddSMark Adams Mat B = subJ[ LAND_PACK_IDX(b_id,grid) ]; 7238fdabdddSMark Adams PetscInt moffset = LAND_MOFFSET(b_id,grid,batch_sz,num_grids,a_mat_offset), nloc, nzl, colbuf[1024], row; 7248fdabdddSMark Adams const PetscInt *cols; 7258fdabdddSMark Adams const PetscScalar *vals; 7268a6f2e61SMark Adams ierr = PetscLogEventBegin(events[5],0,0,0,0);CHKERRQ(ierr); 7278a6f2e61SMark Adams ierr = DMPlexGetHeightStratum(plex[grid],0,&cStart,&cEnd);CHKERRQ(ierr); 7288a6f2e61SMark Adams ierr = DMGetLocalSection(plex[grid], §ion);CHKERRQ(ierr); 7298a6f2e61SMark Adams ierr = DMGetGlobalSection(plex[grid], &globalSection);CHKERRQ(ierr); 730e0eea495SMark ierr = PetscLogEventEnd(events[5],0,0,0,0);CHKERRQ(ierr); 731e0eea495SMark ierr = PetscLogEventBegin(events[6],0,0,0,0);CHKERRQ(ierr); 7328a6f2e61SMark Adams for (PetscInt ej = cStart ; ej < cEnd; ++ej) { 7338fdabdddSMark Adams const PetscScalar *elMat = &h_elem_mats(b_id,grid,ej-cStart,0); 7348fdabdddSMark Adams ierr = DMPlexMatSetClosure(plex[grid], section, globalSection, B, ej, elMat, ADD_VALUES);CHKERRQ(ierr); 7358a6f2e61SMark Adams if (grid==0 && ej==-1) { 7368fdabdddSMark Adams const PetscInt loc_Nf = a_species_offset[grid+1]-a_species_offset[grid], totDim = loc_Nf*Nq; 737e0eea495SMark int d,f; 7388a6f2e61SMark Adams PetscPrintf(PETSC_COMM_SELF,"Kokkos Element matrix %d/%d\n",1,(int)a_numCells[grid]); 739e0eea495SMark for (d = 0; d < totDim; ++d){ 74052cdd6eaSMark for (f = 0; f < totDim; ++f) PetscPrintf(PETSC_COMM_SELF," %12.5e", PetscRealPart(elMat[d*totDim + f])); 74152cdd6eaSMark PetscPrintf(PETSC_COMM_SELF,"\n"); 742e0eea495SMark } 743e8d2b73aSMark Adams exit(14); 744e0eea495SMark } 745e0eea495SMark } 7468fdabdddSMark Adams // move nest matrix to global JacP 7478a6f2e61SMark Adams ierr = MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 7488a6f2e61SMark Adams ierr = MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY);CHKERRQ(ierr); 7498a6f2e61SMark Adams ierr = MatGetSize(B, &nloc, NULL);CHKERRQ(ierr); 7508a6f2e61SMark Adams for (int i=0 ; i<nloc ; i++) { 7518a6f2e61SMark Adams ierr = MatGetRow(B,i,&nzl,&cols,&vals);CHKERRQ(ierr); 7522c71b3e2SJacob Faibussowitsch PetscCheckFalse(nzl>1024,PetscObjectComm((PetscObject) B), PETSC_ERR_PLIB, "Row too big: %D",nzl); 7538a6f2e61SMark Adams for (int j=0; j<nzl; j++) colbuf[j] = cols[j] + moffset; 7548a6f2e61SMark Adams row = i + moffset; 7558a6f2e61SMark Adams ierr = MatSetValues(JacP,1,&row,nzl,colbuf,vals,ADD_VALUES);CHKERRQ(ierr); 7568a6f2e61SMark Adams ierr = MatRestoreRow(B,i,&nzl,&cols,&vals);CHKERRQ(ierr); 7578a6f2e61SMark Adams } 7588fdabdddSMark Adams ierr = MatDestroy(&subJ[ LAND_PACK_IDX(b_id,grid) ]);CHKERRQ(ierr); 7598a6f2e61SMark Adams ierr = PetscLogEventEnd(events[6],0,0,0,0);CHKERRQ(ierr); 7608a6f2e61SMark Adams } // grids 761a587d139SMark } 7628fdabdddSMark Adams } 763e0eea495SMark PetscFunctionReturn(0); 764e0eea495SMark } 765e0eea495SMark } // extern "C" 766