1e0eea495SMark /* 2e0eea495SMark Implements the Kokkos kernel 3e0eea495SMark */ 4e0eea495SMark #include <petscconf.h> 58d80707aSStefano Zampini #if defined(PETSC_HAVE_CUDA_CLANG) 68d80707aSStefano Zampini #include <petsclandau.h> 78d80707aSStefano Zampini #define LANDAU_NOT_IMPLEMENTED SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Not supported with CLANG") 8ffb3bc9aSStefano Zampini PetscErrorCode LandauKokkosJacobian(DM[], const PetscInt, const PetscInt, const PetscInt, const PetscInt[], PetscReal[], PetscScalar[], const PetscScalar[], const LandauStaticData *, const PetscReal, const PetscLogEvent[], const PetscInt[], const PetscInt[], Mat[], Mat) 98d80707aSStefano Zampini { 108d80707aSStefano Zampini LANDAU_NOT_IMPLEMENTED; 118d80707aSStefano Zampini } 12ffb3bc9aSStefano Zampini PetscErrorCode LandauKokkosCreateMatMaps(P4estVertexMaps *, pointInterpolationP4est (*)[LANDAU_MAX_Q_FACE], PetscInt[], PetscInt, PetscInt) 138d80707aSStefano Zampini { 148d80707aSStefano Zampini LANDAU_NOT_IMPLEMENTED; 158d80707aSStefano Zampini } 16ffb3bc9aSStefano Zampini PetscErrorCode LandauKokkosDestroyMatMaps(P4estVertexMaps *, PetscInt) 178d80707aSStefano Zampini { 188d80707aSStefano Zampini LANDAU_NOT_IMPLEMENTED; 198d80707aSStefano Zampini } 20ffb3bc9aSStefano Zampini PetscErrorCode LandauKokkosStaticDataSet(DM, const PetscInt, const PetscInt, const PetscInt, PetscInt[], PetscInt[], PetscInt[], PetscReal[], PetscReal[], PetscReal[], PetscReal[], PetscReal[], PetscReal[], PetscReal[], PetscReal[], LandauStaticData *) 218d80707aSStefano Zampini { 228d80707aSStefano Zampini LANDAU_NOT_IMPLEMENTED; 238d80707aSStefano Zampini } 24ffb3bc9aSStefano Zampini PetscErrorCode LandauKokkosStaticDataClear(LandauStaticData *) 258d80707aSStefano Zampini { 268d80707aSStefano Zampini LANDAU_NOT_IMPLEMENTED; 278d80707aSStefano Zampini } 288d80707aSStefano Zampini #else 2911d22bbfSJunchao Zhang #include <petscvec_kokkos.hpp> 308d80707aSStefano Zampini #include <petsclandau.h> 31e0eea495SMark #include <petsc/private/dmpleximpl.h> /*I "petscdmplex.h" I*/ 32a16fd2c9SJacob Faibussowitsch #include <petsc/private/deviceimpl.h> 33e0eea495SMark #include <petscts.h> 34a587d139SMark 35e0eea495SMark #include <Kokkos_Core.hpp> 36e0eea495SMark #include <cstdio> 37e0eea495SMark typedef Kokkos::TeamPolicy<>::member_type team_member; 38e0eea495SMark #include "../land_tensors.h" 39a587d139SMark #include <petscaijdevice.h> 40e0eea495SMark 41d71ae5a4SJacob Faibussowitsch namespace landau_inner_red 42d71ae5a4SJacob Faibussowitsch { // namespace helps with name resolution in reduction identity 4352cdd6eaSMark template <class ScalarType> 44e0eea495SMark struct array_type { 4552cdd6eaSMark ScalarType gg2[LANDAU_DIM]; 4652cdd6eaSMark ScalarType gg3[LANDAU_DIM][LANDAU_DIM]; 47e0eea495SMark 48e0eea495SMark KOKKOS_INLINE_FUNCTION // Default constructor - Initialize to 0's 49d71ae5a4SJacob Faibussowitsch array_type() 50d71ae5a4SJacob Faibussowitsch { 51e0eea495SMark for (int j = 0; j < LANDAU_DIM; j++) { 5252cdd6eaSMark gg2[j] = 0; 53ad540459SPierre Jolivet for (int k = 0; k < LANDAU_DIM; k++) gg3[j][k] = 0; 54e0eea495SMark } 55e0eea495SMark } 56e0eea495SMark KOKKOS_INLINE_FUNCTION // Copy Constructor 57d71ae5a4SJacob Faibussowitsch array_type(const array_type &rhs) 58d71ae5a4SJacob Faibussowitsch { 59e0eea495SMark for (int j = 0; j < LANDAU_DIM; j++) { 6052cdd6eaSMark gg2[j] = rhs.gg2[j]; 61ad540459SPierre Jolivet for (int k = 0; k < LANDAU_DIM; k++) gg3[j][k] = rhs.gg3[j][k]; 62e0eea495SMark } 63e0eea495SMark } 64e0eea495SMark KOKKOS_INLINE_FUNCTION // add operator 659371c9d4SSatish Balay array_type & 66d71ae5a4SJacob Faibussowitsch operator+=(const array_type &src) 67d71ae5a4SJacob Faibussowitsch { 68e0eea495SMark for (int j = 0; j < LANDAU_DIM; j++) { 6952cdd6eaSMark gg2[j] += src.gg2[j]; 70ad540459SPierre Jolivet for (int k = 0; k < LANDAU_DIM; k++) gg3[j][k] += src.gg3[j][k]; 71e0eea495SMark } 72e0eea495SMark return *this; 73e0eea495SMark } 74e0eea495SMark KOKKOS_INLINE_FUNCTION // volatile add operator 759371c9d4SSatish Balay void 76d71ae5a4SJacob Faibussowitsch operator+=(const volatile array_type &src) volatile 77d71ae5a4SJacob Faibussowitsch { 78e0eea495SMark for (int j = 0; j < LANDAU_DIM; j++) { 7952cdd6eaSMark gg2[j] += src.gg2[j]; 80ad540459SPierre Jolivet for (int k = 0; k < LANDAU_DIM; k++) gg3[j][k] += src.gg3[j][k]; 81e0eea495SMark } 82e0eea495SMark } 83e0eea495SMark }; 8452cdd6eaSMark typedef array_type<PetscReal> TensorValueType; // used to simplify code below 859371c9d4SSatish Balay } // namespace landau_inner_red 86e0eea495SMark 87d71ae5a4SJacob Faibussowitsch namespace Kokkos 88d71ae5a4SJacob Faibussowitsch { //reduction identity must be defined in Kokkos namespace 89e0eea495SMark template <> 9052cdd6eaSMark struct reduction_identity<landau_inner_red::TensorValueType> { 919371c9d4SSatish Balay KOKKOS_FORCEINLINE_FUNCTION static landau_inner_red::TensorValueType sum() { return landau_inner_red::TensorValueType(); } 92e0eea495SMark }; 939371c9d4SSatish Balay } // namespace Kokkos 94e0eea495SMark 95e0eea495SMark extern "C" { 96d71ae5a4SJacob Faibussowitsch PetscErrorCode LandauKokkosCreateMatMaps(P4estVertexMaps maps[], pointInterpolationP4est (*pointMaps)[LANDAU_MAX_Q_FACE], PetscInt Nf[], PetscInt Nq, PetscInt grid) 97d71ae5a4SJacob Faibussowitsch { 98a587d139SMark P4estVertexMaps h_maps; /* host container */ 998a6f2e61SMark Adams const Kokkos::View<pointInterpolationP4est *[LANDAU_MAX_Q_FACE], Kokkos::LayoutRight, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_points((pointInterpolationP4est *)pointMaps, maps[grid].num_reduced); 1008a6f2e61SMark Adams const Kokkos::View<LandauIdx *[LANDAU_MAX_SPECIES][LANDAU_MAX_NQ], Kokkos::LayoutRight, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_gidx((LandauIdx *)maps[grid].gIdx, maps[grid].num_elements); 1018a6f2e61SMark Adams Kokkos::View<pointInterpolationP4est *[LANDAU_MAX_Q_FACE], Kokkos::LayoutRight> *d_points = new Kokkos::View<pointInterpolationP4est *[LANDAU_MAX_Q_FACE], Kokkos::LayoutRight>("points", maps[grid].num_reduced); 1028a6f2e61SMark Adams Kokkos::View<LandauIdx *[LANDAU_MAX_SPECIES][LANDAU_MAX_NQ], Kokkos::LayoutRight> *d_gidx = new Kokkos::View<LandauIdx *[LANDAU_MAX_SPECIES][LANDAU_MAX_NQ], Kokkos::LayoutRight>("gIdx", maps[grid].num_elements); 103a587d139SMark 104a587d139SMark PetscFunctionBegin; 105a587d139SMark Kokkos::deep_copy(*d_gidx, h_gidx); 106a587d139SMark Kokkos::deep_copy(*d_points, h_points); 1078a6f2e61SMark Adams h_maps.num_elements = maps[grid].num_elements; 1088a6f2e61SMark Adams h_maps.num_face = maps[grid].num_face; 1098a6f2e61SMark Adams h_maps.num_reduced = maps[grid].num_reduced; 1108a6f2e61SMark Adams h_maps.deviceType = maps[grid].deviceType; 1118a6f2e61SMark Adams h_maps.numgrids = maps[grid].numgrids; 1128a6f2e61SMark Adams h_maps.Nf = Nf[grid]; 113a587d139SMark h_maps.c_maps = (pointInterpolationP4est(*)[LANDAU_MAX_Q_FACE])d_points->data(); 1148a6f2e61SMark Adams maps[grid].vp1 = (void *)d_points; 115a587d139SMark h_maps.gIdx = (LandauIdx(*)[LANDAU_MAX_SPECIES][LANDAU_MAX_NQ])d_gidx->data(); 1168a6f2e61SMark Adams maps[grid].vp2 = (void *)d_gidx; 117a587d139SMark { 118a587d139SMark Kokkos::View<P4estVertexMaps, Kokkos::HostSpace> h_maps_k(&h_maps); 11911d22bbfSJunchao Zhang Kokkos::View<P4estVertexMaps> *d_maps_k = new Kokkos::View<P4estVertexMaps>(Kokkos::create_mirror(Kokkos::DefaultExecutionSpace::memory_space(), h_maps_k)); 120a587d139SMark Kokkos::deep_copy(*d_maps_k, h_maps_k); 1218a6f2e61SMark Adams maps[grid].d_self = d_maps_k->data(); 1228a6f2e61SMark Adams maps[grid].vp3 = (void *)d_maps_k; 123a587d139SMark } 1243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 125a587d139SMark } 126d71ae5a4SJacob Faibussowitsch PetscErrorCode LandauKokkosDestroyMatMaps(P4estVertexMaps maps[], PetscInt num_grids) 127d71ae5a4SJacob Faibussowitsch { 128362febeeSStefano Zampini PetscFunctionBegin; 1298a6f2e61SMark Adams for (PetscInt grid = 0; grid < num_grids; grid++) { 1308a6f2e61SMark Adams auto a = static_cast<Kokkos::View<pointInterpolationP4est *[LANDAU_MAX_Q_FACE], Kokkos::LayoutRight> *>(maps[grid].vp1); 1318a6f2e61SMark Adams auto b = static_cast<Kokkos::View<LandauIdx *[LANDAU_MAX_SPECIES][LANDAU_MAX_NQ], Kokkos::LayoutRight> *>(maps[grid].vp2); 1328a6f2e61SMark Adams auto c = static_cast<Kokkos::View<P4estVertexMaps *> *>(maps[grid].vp3); 1339371c9d4SSatish Balay delete a; 1349371c9d4SSatish Balay delete b; 1359371c9d4SSatish Balay delete c; 1368a6f2e61SMark Adams } 1373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 138a587d139SMark } 139a587d139SMark 140*ae6bf4a8Smarkadams4 PetscErrorCode LandauKokkosStaticDataSet(DM plex, const PetscInt Nq, const PetscInt batch_sz, const PetscInt num_grids, PetscInt a_numCells[], PetscInt a_species_offset[], PetscInt a_mat_offset[], PetscReal a_nu_alpha[], PetscReal a_nu_beta[], PetscReal a_invMass[], PetscReal a_lambdas[], PetscReal a_invJ[], PetscReal a_x[], PetscReal a_y[], PetscReal a_z[], PetscReal a_w[], LandauStaticData *SData_d) 141d71ae5a4SJacob Faibussowitsch { 142e0eea495SMark PetscReal *BB, *DD; 143e8d2b73aSMark Adams PetscTabulation *Tf; 1448a6f2e61SMark Adams PetscInt dim; 1458a6f2e61SMark Adams PetscInt Nb = Nq, ip_offset[LANDAU_MAX_GRIDS + 1], ipf_offset[LANDAU_MAX_GRIDS + 1], elem_offset[LANDAU_MAX_GRIDS + 1], nip, IPf_sz, Nftot; 146e8d2b73aSMark Adams PetscDS prob; 147e0eea495SMark 148e0eea495SMark PetscFunctionBegin; 1499566063dSJacob Faibussowitsch PetscCall(DMGetDimension(plex, &dim)); 1509566063dSJacob Faibussowitsch PetscCall(DMGetDS(plex, &prob)); 15163a3b9bcSJacob Faibussowitsch PetscCheck(LANDAU_DIM == dim, PETSC_COMM_WORLD, PETSC_ERR_PLIB, "dim %" PetscInt_FMT " != LANDAU_DIM %d", dim, LANDAU_DIM); 1529566063dSJacob Faibussowitsch PetscCall(PetscDSGetTabulation(prob, &Tf)); 1539371c9d4SSatish Balay BB = Tf[0]->T[0]; 1549371c9d4SSatish Balay DD = Tf[0]->T[1]; 1558a6f2e61SMark Adams ip_offset[0] = ipf_offset[0] = elem_offset[0] = 0; 1568a6f2e61SMark Adams nip = 0; 1578a6f2e61SMark Adams IPf_sz = 0; 1588a6f2e61SMark Adams for (PetscInt grid = 0; grid < num_grids; grid++) { 1598a6f2e61SMark Adams PetscInt nfloc = a_species_offset[grid + 1] - a_species_offset[grid]; 1608a6f2e61SMark Adams elem_offset[grid + 1] = elem_offset[grid] + a_numCells[grid]; 1618a6f2e61SMark Adams nip += a_numCells[grid] * Nq; 1628a6f2e61SMark Adams ip_offset[grid + 1] = nip; 1638a6f2e61SMark Adams IPf_sz += Nq * nfloc * a_numCells[grid]; 1648a6f2e61SMark Adams ipf_offset[grid + 1] = IPf_sz; 1658a6f2e61SMark Adams } 1668a6f2e61SMark Adams Nftot = a_species_offset[num_grids]; 1679566063dSJacob Faibussowitsch PetscCall(PetscKokkosInitializeCheck()); 168e8d2b73aSMark Adams { 1698a6f2e61SMark Adams const Kokkos::View<PetscReal *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_alpha(a_nu_alpha, Nftot); 1708a6f2e61SMark Adams auto alpha = new Kokkos::View<PetscReal *, Kokkos::LayoutLeft>("alpha", Nftot); 171e8d2b73aSMark Adams SData_d->alpha = static_cast<void *>(alpha); 1728a6f2e61SMark Adams const Kokkos::View<PetscReal *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_beta(a_nu_beta, Nftot); 1738a6f2e61SMark Adams auto beta = new Kokkos::View<PetscReal *, Kokkos::LayoutLeft>("beta", Nftot); 174e8d2b73aSMark Adams SData_d->beta = static_cast<void *>(beta); 1758a6f2e61SMark Adams const Kokkos::View<PetscReal *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_invMass(a_invMass, Nftot); 1768a6f2e61SMark Adams auto invMass = new Kokkos::View<PetscReal *, Kokkos::LayoutLeft>("invMass", Nftot); 177e8d2b73aSMark Adams SData_d->invMass = static_cast<void *>(invMass); 178*ae6bf4a8Smarkadams4 const Kokkos::View<PetscReal *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_lambdas(a_lambdas, LANDAU_MAX_GRIDS * LANDAU_MAX_GRIDS); 179*ae6bf4a8Smarkadams4 auto lambdas = new Kokkos::View<PetscReal *, Kokkos::LayoutLeft>("lambdas", LANDAU_MAX_GRIDS * LANDAU_MAX_GRIDS); 180*ae6bf4a8Smarkadams4 SData_d->lambdas = static_cast<void *>(lambdas); 181e8d2b73aSMark Adams const Kokkos::View<PetscReal *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_BB(BB, Nq * Nb); 182e8d2b73aSMark Adams auto B = new Kokkos::View<PetscReal *, Kokkos::LayoutLeft>("B", Nq * Nb); 183e8d2b73aSMark Adams SData_d->B = static_cast<void *>(B); 184e8d2b73aSMark Adams const Kokkos::View<PetscReal *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_DD(DD, Nq * Nb * dim); 185e8d2b73aSMark Adams auto D = new Kokkos::View<PetscReal *, Kokkos::LayoutLeft>("D", Nq * Nb * dim); 186e8d2b73aSMark Adams SData_d->D = static_cast<void *>(D); 187e8d2b73aSMark Adams const Kokkos::View<PetscReal *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_invJ(a_invJ, nip * dim * dim); 188e8d2b73aSMark Adams auto invJ = new Kokkos::View<PetscReal *, Kokkos::LayoutLeft>("invJ", nip * dim * dim); 189e8d2b73aSMark Adams SData_d->invJ = static_cast<void *>(invJ); 190e8d2b73aSMark Adams const Kokkos::View<PetscReal *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_x(a_x, nip); 191e8d2b73aSMark Adams auto x = new Kokkos::View<PetscReal *, Kokkos::LayoutLeft>("x", nip); 192e8d2b73aSMark Adams SData_d->x = static_cast<void *>(x); 193e8d2b73aSMark Adams const Kokkos::View<PetscReal *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_y(a_y, nip); 194e8d2b73aSMark Adams auto y = new Kokkos::View<PetscReal *, Kokkos::LayoutLeft>("y", nip); 195e8d2b73aSMark Adams SData_d->y = static_cast<void *>(y); 196e8d2b73aSMark Adams const Kokkos::View<PetscReal *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_w(a_w, nip); 197e8d2b73aSMark Adams auto w = new Kokkos::View<PetscReal *, Kokkos::LayoutLeft>("w", nip); 198e8d2b73aSMark Adams SData_d->w = static_cast<void *>(w); 199e8d2b73aSMark Adams 200e8d2b73aSMark Adams Kokkos::deep_copy(*alpha, h_alpha); 201e8d2b73aSMark Adams Kokkos::deep_copy(*beta, h_beta); 202e8d2b73aSMark Adams Kokkos::deep_copy(*invMass, h_invMass); 203*ae6bf4a8Smarkadams4 Kokkos::deep_copy(*lambdas, h_lambdas); 204e8d2b73aSMark Adams Kokkos::deep_copy(*B, h_BB); 205e8d2b73aSMark Adams Kokkos::deep_copy(*D, h_DD); 206e8d2b73aSMark Adams Kokkos::deep_copy(*invJ, h_invJ); 207e8d2b73aSMark Adams Kokkos::deep_copy(*x, h_x); 208e8d2b73aSMark Adams Kokkos::deep_copy(*y, h_y); 209e8d2b73aSMark Adams Kokkos::deep_copy(*w, h_w); 210e8d2b73aSMark Adams 2118a6f2e61SMark Adams if (dim == 3) { 212984ed092SMark Adams const Kokkos::View<PetscReal *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_z(a_z, nip); 2138a6f2e61SMark Adams auto z = new Kokkos::View<PetscReal *, Kokkos::LayoutLeft>("z", nip); 2148a6f2e61SMark Adams SData_d->z = static_cast<void *>(z); 2158a6f2e61SMark Adams Kokkos::deep_copy(*z, h_z); 2168a6f2e61SMark Adams } else SData_d->z = NULL; 2178a6f2e61SMark Adams 2188a6f2e61SMark Adams // 2198a6f2e61SMark Adams const Kokkos::View<PetscInt *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_NCells(a_numCells, num_grids); 2208a6f2e61SMark Adams auto nc = new Kokkos::View<PetscInt *, Kokkos::LayoutLeft>("NCells", num_grids); 2218a6f2e61SMark Adams SData_d->NCells = static_cast<void *>(nc); 2228a6f2e61SMark Adams Kokkos::deep_copy(*nc, h_NCells); 2238a6f2e61SMark Adams 2248a6f2e61SMark Adams const Kokkos::View<PetscInt *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_species_offset(a_species_offset, num_grids + 1); 2258a6f2e61SMark Adams auto soff = new Kokkos::View<PetscInt *, Kokkos::LayoutLeft>("species_offset", num_grids + 1); 2268a6f2e61SMark Adams SData_d->species_offset = static_cast<void *>(soff); 2278a6f2e61SMark Adams Kokkos::deep_copy(*soff, h_species_offset); 2288a6f2e61SMark Adams 2298a6f2e61SMark Adams const Kokkos::View<PetscInt *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_mat_offset(a_mat_offset, num_grids + 1); 2308a6f2e61SMark Adams auto moff = new Kokkos::View<PetscInt *, Kokkos::LayoutLeft>("mat_offset", num_grids + 1); 2318a6f2e61SMark Adams SData_d->mat_offset = static_cast<void *>(moff); 2328a6f2e61SMark Adams Kokkos::deep_copy(*moff, h_mat_offset); 2338a6f2e61SMark Adams 2348a6f2e61SMark Adams const Kokkos::View<PetscInt *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_ip_offset(ip_offset, num_grids + 1); 2358a6f2e61SMark Adams auto ipoff = new Kokkos::View<PetscInt *, Kokkos::LayoutLeft>("ip_offset", num_grids + 1); 2368a6f2e61SMark Adams SData_d->ip_offset = static_cast<void *>(ipoff); 2378a6f2e61SMark Adams Kokkos::deep_copy(*ipoff, h_ip_offset); 2388a6f2e61SMark Adams 2398a6f2e61SMark Adams const Kokkos::View<PetscInt *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_elem_offset(elem_offset, num_grids + 1); 2408a6f2e61SMark Adams auto eoff = new Kokkos::View<PetscInt *, Kokkos::LayoutLeft>("elem_offset", num_grids + 1); 2418a6f2e61SMark Adams SData_d->elem_offset = static_cast<void *>(eoff); 2428a6f2e61SMark Adams Kokkos::deep_copy(*eoff, h_elem_offset); 2438a6f2e61SMark Adams 2448a6f2e61SMark Adams const Kokkos::View<PetscInt *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_ipf_offset(ipf_offset, num_grids + 1); 2458a6f2e61SMark Adams auto ipfoff = new Kokkos::View<PetscInt *, Kokkos::LayoutLeft>("ipf_offset", num_grids + 1); 2468a6f2e61SMark Adams SData_d->ipf_offset = static_cast<void *>(ipfoff); 2478a6f2e61SMark Adams Kokkos::deep_copy(*ipfoff, h_ipf_offset); 2488a6f2e61SMark Adams #if defined(LANDAU_LAYOUT_LEFT) // preallocate dynamic data, no copy 2498fdabdddSMark Adams auto ipfdf_data = new Kokkos::View<PetscReal ***, Kokkos::LayoutLeft>("fdf", batch_sz, dim + 1, IPf_sz); 2508a6f2e61SMark Adams #else 2518fdabdddSMark Adams auto ipfdf_data = new Kokkos::View<PetscReal ***, Kokkos::LayoutRight>("fdf", batch_sz, dim + 1, IPf_sz); 2528a6f2e61SMark Adams #endif 2538a6f2e61SMark Adams SData_d->ipfdf_data = static_cast<void *>(ipfdf_data); 2548fdabdddSMark Adams auto Eq_m = new Kokkos::View<PetscReal *, Kokkos::LayoutLeft>("Eq_m", Nftot); // allocate but do not set, same for whole batch 255e8d2b73aSMark Adams SData_d->Eq_m = static_cast<void *>(Eq_m); 256cada7fc7SMark Adams const Kokkos::View<LandauIdx *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_coo_elem_offsets((LandauIdx *)SData_d->coo_elem_offsets, SData_d->coo_n_cellsTot + 1); 257cada7fc7SMark Adams auto coo_elem_offsets = new Kokkos::View<LandauIdx *, Kokkos::LayoutLeft>("coo_elem_offsets", SData_d->coo_n_cellsTot + 1); 258cada7fc7SMark Adams const Kokkos::View<LandauIdx *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_coo_elem_fullNb((LandauIdx *)SData_d->coo_elem_fullNb, SData_d->coo_n_cellsTot); 259cada7fc7SMark Adams auto coo_elem_fullNb = new Kokkos::View<LandauIdx *, Kokkos::LayoutLeft>("coo_elem_offsets", SData_d->coo_n_cellsTot); 260cada7fc7SMark Adams const Kokkos::View<LandauIdx *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_coo_elem_point_offsets((LandauIdx *)SData_d->coo_elem_point_offsets, SData_d->coo_n_cellsTot * (LANDAU_MAX_NQ + 1)); 261cada7fc7SMark Adams auto coo_elem_point_offsets = new Kokkos::View<LandauIdx *, Kokkos::LayoutLeft>("coo_elem_point_offsets", SData_d->coo_n_cellsTot * (LANDAU_MAX_NQ + 1)); 262bfc784b7SMark Adams // assign & copy 263bfc784b7SMark Adams Kokkos::deep_copy(*coo_elem_offsets, h_coo_elem_offsets); 264bfc784b7SMark Adams Kokkos::deep_copy(*coo_elem_fullNb, h_coo_elem_fullNb); 265bfc784b7SMark Adams Kokkos::deep_copy(*coo_elem_point_offsets, h_coo_elem_point_offsets); 266bfc784b7SMark Adams // need to free this now and use pointer space 2679566063dSJacob Faibussowitsch PetscCall(PetscFree3(SData_d->coo_elem_offsets, SData_d->coo_elem_fullNb, SData_d->coo_elem_point_offsets)); 268cada7fc7SMark Adams SData_d->coo_elem_offsets = static_cast<void *>(coo_elem_offsets); 269cada7fc7SMark Adams SData_d->coo_elem_fullNb = static_cast<void *>(coo_elem_fullNb); 270cada7fc7SMark Adams SData_d->coo_elem_point_offsets = static_cast<void *>(coo_elem_point_offsets); 271a31f6053SMark Adams auto coo_vals = new Kokkos::View<PetscScalar *, Kokkos::LayoutRight, Kokkos::DefaultExecutionSpace>("coo_vals", SData_d->coo_size); 272a31f6053SMark Adams SData_d->coo_vals = static_cast<void *>(coo_vals); 273e8d2b73aSMark Adams } 2748a6f2e61SMark Adams SData_d->maps = NULL; // not used 2753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 276e8d2b73aSMark Adams } 277e8d2b73aSMark Adams 278d71ae5a4SJacob Faibussowitsch PetscErrorCode LandauKokkosStaticDataClear(LandauStaticData *SData_d) 279d71ae5a4SJacob Faibussowitsch { 280e8d2b73aSMark Adams PetscFunctionBegin; 281e8d2b73aSMark Adams if (SData_d->alpha) { 282e8d2b73aSMark Adams auto alpha = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->alpha); 283e8d2b73aSMark Adams delete alpha; 2848a6f2e61SMark Adams SData_d->alpha = NULL; 285e8d2b73aSMark Adams auto beta = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->beta); 286e8d2b73aSMark Adams delete beta; 287e8d2b73aSMark Adams auto invMass = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->invMass); 288e8d2b73aSMark Adams delete invMass; 289*ae6bf4a8Smarkadams4 auto lambdas = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->lambdas); 290*ae6bf4a8Smarkadams4 delete lambdas; 291e8d2b73aSMark Adams auto B = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->B); 292e8d2b73aSMark Adams delete B; 293e8d2b73aSMark Adams auto D = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->D); 294e8d2b73aSMark Adams delete D; 295e8d2b73aSMark Adams auto invJ = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->invJ); 296e8d2b73aSMark Adams delete invJ; 297e8d2b73aSMark Adams auto x = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->x); 298e8d2b73aSMark Adams delete x; 299e8d2b73aSMark Adams auto y = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->y); 300e8d2b73aSMark Adams delete y; 3018a6f2e61SMark Adams if (SData_d->z) { 302e8d2b73aSMark Adams auto z = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->z); 303e8d2b73aSMark Adams delete z; 3048a6f2e61SMark Adams } 3058a6f2e61SMark Adams #if defined(LANDAU_LAYOUT_LEFT) // preallocate dynamic data, no copy 3068fdabdddSMark Adams auto z = static_cast<Kokkos::View<PetscReal ***, Kokkos::LayoutLeft> *>(SData_d->ipfdf_data); 3078a6f2e61SMark Adams #else 3088fdabdddSMark Adams auto z = static_cast<Kokkos::View<PetscReal ***, Kokkos::LayoutRight> *>(SData_d->ipfdf_data); 3098a6f2e61SMark Adams #endif 3108a6f2e61SMark Adams delete z; 311e8d2b73aSMark Adams auto w = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->w); 312e8d2b73aSMark Adams delete w; 313e8d2b73aSMark Adams auto Eq_m = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->Eq_m); 314e8d2b73aSMark Adams delete Eq_m; 3158a6f2e61SMark Adams // offset 3168a6f2e61SMark Adams auto nc = static_cast<Kokkos::View<PetscInt *, Kokkos::LayoutLeft> *>(SData_d->NCells); 3178a6f2e61SMark Adams delete nc; 3188a6f2e61SMark Adams auto soff = static_cast<Kokkos::View<PetscInt *, Kokkos::LayoutLeft> *>(SData_d->species_offset); 3198a6f2e61SMark Adams delete soff; 3208a6f2e61SMark Adams auto moff = static_cast<Kokkos::View<PetscInt *, Kokkos::LayoutLeft> *>(SData_d->mat_offset); 3218a6f2e61SMark Adams delete moff; 3228a6f2e61SMark Adams auto ipoff = static_cast<Kokkos::View<PetscInt *, Kokkos::LayoutLeft> *>(SData_d->ip_offset); 3238a6f2e61SMark Adams delete ipoff; 3248a6f2e61SMark Adams auto eoff = static_cast<Kokkos::View<PetscInt *, Kokkos::LayoutLeft> *>(SData_d->elem_offset); 3258a6f2e61SMark Adams delete eoff; 3268a6f2e61SMark Adams auto ipfoff = static_cast<Kokkos::View<PetscInt *, Kokkos::LayoutLeft> *>(SData_d->ipf_offset); 3278a6f2e61SMark Adams delete ipfoff; 328bfc784b7SMark Adams auto coo_elem_offsets = static_cast<Kokkos::View<LandauIdx *, Kokkos::LayoutLeft> *>((void *)SData_d->coo_elem_offsets); 329bfc784b7SMark Adams delete coo_elem_offsets; 330bfc784b7SMark Adams auto coo_elem_fullNb = static_cast<Kokkos::View<LandauIdx *, Kokkos::LayoutLeft> *>((void *)SData_d->coo_elem_fullNb); 331bfc784b7SMark Adams delete coo_elem_fullNb; 332cada7fc7SMark Adams auto coo_elem_point_offsets = static_cast<Kokkos::View<LandauIdx *, Kokkos::LayoutLeft> *>((void *)SData_d->coo_elem_point_offsets); 333bfc784b7SMark Adams delete coo_elem_point_offsets; 334bfc784b7SMark Adams SData_d->coo_elem_offsets = NULL; 335bfc784b7SMark Adams SData_d->coo_elem_point_offsets = NULL; 336bfc784b7SMark Adams SData_d->coo_elem_fullNb = NULL; 337a31f6053SMark Adams auto coo_vals = static_cast<Kokkos::View<PetscScalar *, Kokkos::LayoutRight, Kokkos::DefaultExecutionSpace> *>((void *)SData_d->coo_vals); 338a31f6053SMark Adams delete coo_vals; 339af0767daSMark Adams } 3403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 341e8d2b73aSMark Adams } 342e8d2b73aSMark Adams 34359118022SMark Adams #define KOKKOS_SHARED_LEVEL 0 // 0 is shared, 1 is global 34459118022SMark Adams 3458a6f2e61SMark Adams KOKKOS_INLINE_FUNCTION 346d71ae5a4SJacob Faibussowitsch PetscErrorCode landau_mat_assemble(PetscSplitCSRDataStructure d_mat, PetscScalar *coo_vals, const PetscScalar Aij, const PetscInt f, const PetscInt g, const PetscInt Nb, PetscInt moffset, const PetscInt elem, const PetscInt fieldA, const P4estVertexMaps *d_maps, const LandauIdx coo_elem_offsets[], const LandauIdx coo_elem_fullNb[], const LandauIdx (*coo_elem_point_offsets)[LANDAU_MAX_NQ + 1], const PetscInt glb_elem_idx, const PetscInt bid_coo_sz_batch) 347d71ae5a4SJacob Faibussowitsch { 348ad4b5651SMark Adams PetscInt idx, q, nr, nc, d; 3498a6f2e61SMark Adams const LandauIdx *const Idxs = &d_maps->gIdx[elem][fieldA][0]; 350bfc784b7SMark Adams PetscScalar row_scale[LANDAU_MAX_Q_FACE] = {0}, col_scale[LANDAU_MAX_Q_FACE] = {0}; 351bfc784b7SMark Adams if (coo_vals) { // mirror (i,j) in CreateStaticGPUData 352bfc784b7SMark Adams const int fullNb = coo_elem_fullNb[glb_elem_idx], fullNb2 = fullNb * fullNb; 353bfc784b7SMark Adams idx = Idxs[f]; 354bfc784b7SMark Adams if (idx >= 0) { 355bfc784b7SMark Adams nr = 1; 356bfc784b7SMark Adams row_scale[0] = 1.; 357bfc784b7SMark Adams } else { 358bfc784b7SMark Adams idx = -idx - 1; 359bfc784b7SMark Adams for (q = 0, nr = 0; q < d_maps->num_face; q++, nr++) { 360bfc784b7SMark Adams if (d_maps->c_maps[idx][q].gid < 0) break; 361bfc784b7SMark Adams row_scale[q] = d_maps->c_maps[idx][q].scale; 362bfc784b7SMark Adams } 363bfc784b7SMark Adams } 364bfc784b7SMark Adams idx = Idxs[g]; 365bfc784b7SMark Adams if (idx >= 0) { 366bfc784b7SMark Adams nc = 1; 367bfc784b7SMark Adams col_scale[0] = 1.; 368bfc784b7SMark Adams } else { 369bfc784b7SMark Adams idx = -idx - 1; 370bfc784b7SMark Adams nc = d_maps->num_face; 371bfc784b7SMark Adams for (q = 0, nc = 0; q < d_maps->num_face; q++, nc++) { 372bfc784b7SMark Adams if (d_maps->c_maps[idx][q].gid < 0) break; 373bfc784b7SMark Adams col_scale[q] = d_maps->c_maps[idx][q].scale; 374bfc784b7SMark Adams } 375bfc784b7SMark Adams } 376cada7fc7SMark Adams const int idx0 = bid_coo_sz_batch + coo_elem_offsets[glb_elem_idx] + fieldA * fullNb2 + fullNb * coo_elem_point_offsets[glb_elem_idx][f] + nr * coo_elem_point_offsets[glb_elem_idx][g]; 377bfc784b7SMark Adams for (int q = 0, idx2 = idx0; q < nr; q++) { 378ad540459SPierre Jolivet for (int d = 0; d < nc; d++, idx2++) coo_vals[idx2] = row_scale[q] * col_scale[d] * Aij; 379bfc784b7SMark Adams } 380bfc784b7SMark Adams } else { 381bfc784b7SMark Adams PetscScalar vals[LANDAU_MAX_Q_FACE * LANDAU_MAX_Q_FACE] = {0}; 382ad4b5651SMark Adams PetscInt rows[LANDAU_MAX_Q_FACE], cols[LANDAU_MAX_Q_FACE]; 383ad4b5651SMark Adams idx = Idxs[f]; 3848a6f2e61SMark Adams if (idx >= 0) { 3858a6f2e61SMark Adams nr = 1; 386ad4b5651SMark Adams rows[0] = idx; 387ad4b5651SMark Adams row_scale[0] = 1.; 3888a6f2e61SMark Adams } else { 389ad4b5651SMark Adams idx = -idx - 1; 390ad4b5651SMark Adams for (q = 0, nr = 0; q < d_maps->num_face; q++, nr++) { 391ad4b5651SMark Adams if (d_maps->c_maps[idx][q].gid < 0) break; 392ad4b5651SMark Adams rows[q] = d_maps->c_maps[idx][q].gid; 393ad4b5651SMark Adams row_scale[q] = d_maps->c_maps[idx][q].scale; 3948a6f2e61SMark Adams } 395ad4b5651SMark Adams } 396ad4b5651SMark Adams idx = Idxs[g]; 3978a6f2e61SMark Adams if (idx >= 0) { 3988a6f2e61SMark Adams nc = 1; 399ad4b5651SMark Adams cols[0] = idx; 400ad4b5651SMark Adams col_scale[0] = 1.; 4018a6f2e61SMark Adams } else { 402ad4b5651SMark Adams idx = -idx - 1; 403ad4b5651SMark Adams for (q = 0, nc = 0; q < d_maps->num_face; q++, nc++) { 404ad4b5651SMark Adams if (d_maps->c_maps[idx][q].gid < 0) break; 405ad4b5651SMark Adams cols[q] = d_maps->c_maps[idx][q].gid; 406ad4b5651SMark Adams col_scale[q] = d_maps->c_maps[idx][q].scale; 4078a6f2e61SMark Adams } 408ad4b5651SMark Adams } 409bfc784b7SMark Adams 410ad4b5651SMark Adams for (q = 0; q < nr; q++) rows[q] = rows[q] + moffset; 411ad4b5651SMark Adams for (q = 0; q < nc; q++) cols[q] = cols[q] + moffset; 4128a6f2e61SMark Adams for (q = 0; q < nr; q++) { 413ad540459SPierre Jolivet for (d = 0; d < nc; d++) vals[q * nc + d] = row_scale[q] * col_scale[d] * Aij; 4148a6f2e61SMark Adams } 4153ba16761SJacob Faibussowitsch static_cast<void>(MatSetValuesDevice(d_mat, nr, rows, nc, cols, vals, ADD_VALUES)); 416bfc784b7SMark Adams } 4173ba16761SJacob Faibussowitsch return PETSC_SUCCESS; 4188a6f2e61SMark Adams } 4198a6f2e61SMark Adams 420d71ae5a4SJacob Faibussowitsch PetscErrorCode LandauKokkosJacobian(DM plex[], const PetscInt Nq, const PetscInt batch_sz, const PetscInt num_grids, const PetscInt a_numCells[], PetscReal a_Eq_m[], PetscScalar a_elem_closure[], const PetscScalar a_xarray[], const LandauStaticData *SData_d, const PetscReal shift, const PetscLogEvent events[], const PetscInt a_mat_offset[], const PetscInt a_species_offset[], Mat subJ[], Mat JacP) 421d71ae5a4SJacob Faibussowitsch { 422e8d2b73aSMark Adams using scr_mem_t = Kokkos::DefaultExecutionSpace::scratch_memory_space; 42319be780dSMark Adams using real2_scr_t = Kokkos::View<PetscScalar **, Kokkos::LayoutRight, scr_mem_t>; 424e8d2b73aSMark Adams using g2_scr_t = Kokkos::View<PetscReal ***, Kokkos::LayoutRight, scr_mem_t>; 425e8d2b73aSMark Adams using g3_scr_t = Kokkos::View<PetscReal ****, Kokkos::LayoutRight, scr_mem_t>; 4268fdabdddSMark Adams PetscInt Nb = Nq, dim, num_cells_max, Nf_max, num_cells_batch; 427dbabbaf5SMark Adams int nfaces = 0, vector_size = 512 / Nq; 428e8d2b73aSMark Adams LandauCtx *ctx; 429e8d2b73aSMark Adams PetscReal *d_Eq_m = NULL; 4308a6f2e61SMark Adams PetscScalar *d_vertex_f = NULL; 4318a6f2e61SMark Adams P4estVertexMaps *maps[LANDAU_MAX_GRIDS]; // this gets captured 4328a6f2e61SMark Adams PetscSplitCSRDataStructure d_mat; 4338fdabdddSMark Adams PetscContainer container; 434bd08a171SMark Adams const int conc = Kokkos::DefaultExecutionSpace().concurrency(), openmp = !!(conc < 1000), team_size = (openmp == 0) ? Nq : 1; 435bfc784b7SMark Adams const PetscInt coo_sz_batch = SData_d->coo_size / batch_sz; // capture 436e8d2b73aSMark Adams auto d_alpha_k = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->alpha); //static data 437e8d2b73aSMark Adams const PetscReal *d_alpha = d_alpha_k->data(); 4388a6f2e61SMark Adams const PetscInt Nftot = d_alpha_k->size(); // total number of species 439e8d2b73aSMark Adams auto d_beta_k = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->beta); 440e8d2b73aSMark Adams const PetscReal *d_beta = d_beta_k->data(); 441e8d2b73aSMark Adams auto d_invMass_k = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->invMass); 442e8d2b73aSMark Adams const PetscReal *d_invMass = d_invMass_k->data(); 443*ae6bf4a8Smarkadams4 auto d_lambdas_k = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->lambdas); 444*ae6bf4a8Smarkadams4 const PetscReal *d_lambdas = d_lambdas_k->data(); 445e8d2b73aSMark Adams auto d_B_k = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->B); 446e8d2b73aSMark Adams const PetscReal *d_BB = d_B_k->data(); 447e8d2b73aSMark Adams auto d_D_k = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->D); 448e8d2b73aSMark Adams const PetscReal *d_DD = d_D_k->data(); 449e8d2b73aSMark Adams auto d_invJ_k = *static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->invJ); // use Kokkos vector in kernels 450e8d2b73aSMark Adams auto d_x_k = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->x); //static data 451e8d2b73aSMark Adams const PetscReal *d_x = d_x_k->data(); 452e8d2b73aSMark Adams auto d_y_k = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->y); //static data 453e8d2b73aSMark Adams const PetscReal *d_y = d_y_k->data(); 454e8d2b73aSMark Adams auto d_z_k = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->z); //static data 4558a6f2e61SMark Adams const PetscReal *d_z = (LANDAU_DIM == 3) ? d_z_k->data() : NULL; 4568a6f2e61SMark Adams auto d_w_k = *static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->w); //static data 4578a6f2e61SMark Adams const PetscReal *d_w = d_w_k.data(); 4588fdabdddSMark Adams // grid offsets - single vertex grid data 4598a6f2e61SMark Adams auto d_numCells_k = static_cast<Kokkos::View<PetscInt *, Kokkos::LayoutLeft> *>(SData_d->NCells); 4608a6f2e61SMark Adams const PetscInt *d_numCells = d_numCells_k->data(); 4618a6f2e61SMark Adams auto d_species_offset_k = static_cast<Kokkos::View<PetscInt *, Kokkos::LayoutLeft> *>(SData_d->species_offset); 4628a6f2e61SMark Adams const PetscInt *d_species_offset = d_species_offset_k->data(); 4638a6f2e61SMark Adams auto d_mat_offset_k = static_cast<Kokkos::View<PetscInt *, Kokkos::LayoutLeft> *>(SData_d->mat_offset); 4648a6f2e61SMark Adams const PetscInt *d_mat_offset = d_mat_offset_k->data(); 4658a6f2e61SMark Adams auto d_ip_offset_k = static_cast<Kokkos::View<PetscInt *, Kokkos::LayoutLeft> *>(SData_d->ip_offset); 4668a6f2e61SMark Adams const PetscInt *d_ip_offset = d_ip_offset_k->data(); 4678a6f2e61SMark Adams auto d_ipf_offset_k = static_cast<Kokkos::View<PetscInt *, Kokkos::LayoutLeft> *>(SData_d->ipf_offset); 4688a6f2e61SMark Adams const PetscInt *d_ipf_offset = d_ipf_offset_k->data(); 4698a6f2e61SMark Adams auto d_elem_offset_k = static_cast<Kokkos::View<PetscInt *, Kokkos::LayoutLeft> *>(SData_d->elem_offset); 4708a6f2e61SMark Adams const PetscInt *d_elem_offset = d_elem_offset_k->data(); 4718fdabdddSMark Adams #if defined(LANDAU_LAYOUT_LEFT) // preallocate dynamic data, including batched vertices 4728fdabdddSMark Adams Kokkos::View<PetscReal ***, Kokkos::LayoutLeft> d_fdf_k = *static_cast<Kokkos::View<PetscReal ***, Kokkos::LayoutLeft> *>(SData_d->ipfdf_data); 4738a6f2e61SMark Adams #else 4748fdabdddSMark Adams Kokkos::View<PetscReal ***, Kokkos::LayoutRight> d_fdf_k = *static_cast<Kokkos::View<PetscReal ***, Kokkos::LayoutRight> *>(SData_d->ipfdf_data); 4758a6f2e61SMark Adams #endif 4768fdabdddSMark Adams auto d_Eq_m_k = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->Eq_m); // static storage, dynamci data - E(t), copy later, single vertex 477bfc784b7SMark Adams // COO 478cada7fc7SMark Adams auto d_coo_elem_offsets_k = static_cast<Kokkos::View<LandauIdx *, Kokkos::LayoutLeft> *>(SData_d->coo_elem_offsets); 479cada7fc7SMark Adams LandauIdx *d_coo_elem_offsets = (SData_d->coo_size == 0) ? NULL : d_coo_elem_offsets_k->data(); 480cada7fc7SMark Adams auto d_coo_elem_fullNb_k = static_cast<Kokkos::View<LandauIdx *, Kokkos::LayoutLeft> *>(SData_d->coo_elem_fullNb); 481cada7fc7SMark Adams LandauIdx *d_coo_elem_fullNb = (SData_d->coo_size == 0) ? NULL : d_coo_elem_fullNb_k->data(); 482cada7fc7SMark Adams auto d_coo_elem_point_offsets_k = static_cast<Kokkos::View<LandauIdx *, Kokkos::LayoutLeft> *>(SData_d->coo_elem_point_offsets); 483cada7fc7SMark Adams LandauIdx(*d_coo_elem_point_offsets)[LANDAU_MAX_NQ + 1] = (SData_d->coo_size == 0) ? NULL : (LandauIdx(*)[LANDAU_MAX_NQ + 1]) d_coo_elem_point_offsets_k->data(); 484a31f6053SMark Adams auto d_coo_vals_k = static_cast<Kokkos::View<PetscScalar *, Kokkos::LayoutRight> *>(SData_d->coo_vals); 485a31f6053SMark Adams PetscScalar *d_coo_vals = (SData_d->coo_size == 0) ? NULL : d_coo_vals_k->data(); 4868fdabdddSMark Adams 487e8d2b73aSMark Adams PetscFunctionBegin; 488a31f6053SMark Adams while (vector_size & (vector_size - 1)) vector_size = vector_size & (vector_size - 1); 489dbabbaf5SMark Adams if (vector_size > 16) vector_size = 16; // printf("DEBUG\n"); 4909566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(events[3], 0, 0, 0, 0)); 4919566063dSJacob Faibussowitsch PetscCall(DMGetApplicationContext(plex[0], &ctx)); 49228b400f6SJacob Faibussowitsch PetscCheck(ctx, PETSC_COMM_SELF, PETSC_ERR_PLIB, "no context"); 4939566063dSJacob Faibussowitsch PetscCall(DMGetDimension(plex[0], &dim)); 49463a3b9bcSJacob Faibussowitsch PetscCheck(LANDAU_DIM == dim, PETSC_COMM_WORLD, PETSC_ERR_PLIB, "dim %" PetscInt_FMT " != LANDAU_DIM %d", dim, LANDAU_DIM); 495a587d139SMark if (ctx->gpu_assembly) { 4969566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)JacP, "assembly_maps", (PetscObject *)&container)); 497bfc784b7SMark Adams if (container) { 498a587d139SMark P4estVertexMaps *h_maps = NULL; 4999566063dSJacob Faibussowitsch PetscCall(PetscContainerGetPointer(container, (void **)&h_maps)); 5008a6f2e61SMark Adams for (PetscInt grid = 0; grid < num_grids; grid++) { 5018a6f2e61SMark Adams if (h_maps[grid].d_self) { 5028a6f2e61SMark Adams maps[grid] = h_maps[grid].d_self; 5038a6f2e61SMark Adams nfaces = h_maps[grid].num_face; // nface=0 for CPU assembly 504a587d139SMark } else { 505a587d139SMark SETERRQ(PETSC_COMM_SELF, PETSC_ERR_PLIB, "GPU assembly but no metadata in container"); 506a587d139SMark } 5078a6f2e61SMark Adams } 508bfc784b7SMark Adams if (!d_coo_vals) { 509a587d139SMark // this does the setup the first time called 5109566063dSJacob Faibussowitsch PetscCall(MatKokkosGetDeviceMatWrite(JacP, &d_mat)); 511bfc784b7SMark Adams } else { 5128fdabdddSMark Adams d_mat = NULL; 513a587d139SMark } 514bfc784b7SMark Adams } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_PLIB, "GPU assembly but no metadata in container"); 515a587d139SMark } else { 5168a6f2e61SMark Adams for (PetscInt grid = 0; grid < num_grids; grid++) maps[grid] = NULL; 5178a6f2e61SMark Adams nfaces = 0; 5188fdabdddSMark Adams d_mat = NULL; 5198fdabdddSMark Adams container = NULL; 520a587d139SMark } 5218fdabdddSMark Adams num_cells_batch = Nf_max = num_cells_max = 0; 5228a6f2e61SMark Adams for (PetscInt grid = 0; grid < num_grids; grid++) { 5238a6f2e61SMark Adams int Nfloc = a_species_offset[grid + 1] - a_species_offset[grid]; 5248a6f2e61SMark Adams if (Nfloc > Nf_max) Nf_max = Nfloc; 5258a6f2e61SMark Adams if (a_numCells[grid] > num_cells_max) num_cells_max = a_numCells[grid]; 5268fdabdddSMark Adams num_cells_batch += a_numCells[grid]; // we don't have a host element offset here (but in ctx) 5278a6f2e61SMark Adams } 528d9008a5dSMark Adams const int elem_mat_num_cells_max_grid = container ? 0 : num_cells_max; 529bfbbad94Smarkadams4 #ifdef LAND_SUPPORT_CPU_ASS 530bfbbad94Smarkadams4 const int totDim_max = Nf_max * Nq, elem_mat_size_max = totDim_max * totDim_max; 531a31f6053SMark Adams Kokkos::View<PetscScalar ****, Kokkos::LayoutRight> d_elem_mats("element matrices", batch_sz, num_grids, elem_mat_num_cells_max_grid, elem_mat_size_max); // not used (cpu assembly) 532bfbbad94Smarkadams4 #endif 5338a6f2e61SMark Adams const Kokkos::View<PetscReal *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_Eq_m_k(a_Eq_m, Nftot); 5348a6f2e61SMark Adams if (a_elem_closure || a_xarray) { 535e8d2b73aSMark Adams Kokkos::deep_copy(*d_Eq_m_k, h_Eq_m_k); 536e8d2b73aSMark Adams d_Eq_m = d_Eq_m_k->data(); 5378a6f2e61SMark Adams } else d_Eq_m = NULL; 5389566063dSJacob Faibussowitsch PetscCall(PetscKokkosInitializeCheck()); 5399566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(events[3], 0, 0, 0, 0)); 5408a6f2e61SMark Adams if (a_elem_closure || a_xarray) { // Jacobian, create f & df 5418a6f2e61SMark Adams Kokkos::View<PetscScalar *, Kokkos::LayoutLeft> *d_vertex_f_k = NULL; 5429566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(events[1], 0, 0, 0, 0)); 5438a6f2e61SMark Adams if (a_elem_closure) { 5448a6f2e61SMark Adams PetscInt closure_sz = 0; // argh, don't have this on the host!!! 5458a6f2e61SMark Adams for (PetscInt grid = 0; grid < num_grids; grid++) { 5468a6f2e61SMark Adams PetscInt nfloc = a_species_offset[grid + 1] - a_species_offset[grid]; 5478a6f2e61SMark Adams closure_sz += Nq * nfloc * a_numCells[grid]; 5488a6f2e61SMark Adams } 5498fdabdddSMark Adams closure_sz *= batch_sz; 5508a6f2e61SMark Adams d_vertex_f_k = new Kokkos::View<PetscScalar *, Kokkos::LayoutLeft>("closure", closure_sz); 5518a6f2e61SMark Adams const Kokkos::View<PetscScalar *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_closure_k(a_elem_closure, closure_sz); // Vertex data for each element 5528a6f2e61SMark Adams Kokkos::deep_copy(*d_vertex_f_k, h_closure_k); 5538a6f2e61SMark Adams d_vertex_f = d_vertex_f_k->data(); 554af0767daSMark Adams } else { 5558a6f2e61SMark Adams d_vertex_f = (PetscScalar *)a_xarray; 556af0767daSMark Adams } 5579566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(events[1], 0, 0, 0, 0)); 5589566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(events[8], 0, 0, 0, 0)); 5599566063dSJacob Faibussowitsch PetscCall(PetscLogGpuTimeBegin()); 56019be780dSMark Adams 56119be780dSMark Adams const int scr_bytes_fdf = real2_scr_t::shmem_size(Nf_max, Nb); 562dbabbaf5SMark Adams PetscCall(PetscInfo(plex[0], "df & f shared memory size: %d bytes in level, %d num cells total=%d, team size=%d, vector size=%d, #face=%d, Nf_max=%d\n", scr_bytes_fdf, KOKKOS_SHARED_LEVEL, num_cells_batch * batch_sz, team_size, vector_size, nfaces, Nf_max)); 5639371c9d4SSatish Balay Kokkos::parallel_for( 5649371c9d4SSatish Balay "f, df", Kokkos::TeamPolicy<>(num_cells_batch * batch_sz, team_size, /* Kokkos::AUTO */ vector_size).set_scratch_size(KOKKOS_SHARED_LEVEL, Kokkos::PerTeam(scr_bytes_fdf)), KOKKOS_LAMBDA(const team_member team) { 5658fdabdddSMark Adams const PetscInt b_Nelem = d_elem_offset[num_grids], b_elem_idx = team.league_rank() % b_Nelem, b_id = team.league_rank() / b_Nelem, IPf_sz_glb = d_ipf_offset[num_grids]; 5668a6f2e61SMark Adams // find my grid 5678fdabdddSMark Adams PetscInt grid = 0; 5688fdabdddSMark Adams while (b_elem_idx >= d_elem_offset[grid + 1]) grid++; 5698a6f2e61SMark Adams { 5708fdabdddSMark Adams const PetscInt loc_nip = d_numCells[grid] * Nq, loc_Nf = d_species_offset[grid + 1] - d_species_offset[grid], loc_elem = b_elem_idx - d_elem_offset[grid]; 5718fdabdddSMark Adams const PetscInt moffset = LAND_MOFFSET(b_id, grid, batch_sz, num_grids, d_mat_offset); 57219be780dSMark Adams { 57319be780dSMark Adams real2_scr_t s_coef_k(team.team_scratch(KOKKOS_SHARED_LEVEL), Nf_max, Nb); 57419be780dSMark Adams PetscScalar *coef; 5758fdabdddSMark Adams const PetscReal *invJe = &d_invJ_k((d_ip_offset[grid] + loc_elem * Nq) * dim * dim); 576a587d139SMark // un pack IPData 5778a6f2e61SMark Adams if (!maps[grid]) { 5788fdabdddSMark Adams coef = &d_vertex_f[b_id * IPf_sz_glb + d_ipf_offset[grid] + loc_elem * Nb * loc_Nf]; // closure and IP indexing are the same 579af0767daSMark Adams } else { 58019be780dSMark Adams coef = s_coef_k.data(); 58119be780dSMark Adams Kokkos::parallel_for(Kokkos::TeamThreadRange(team, 0, (int)loc_Nf), [=](int f) { 58219be780dSMark Adams //for (int f = 0; f < loc_Nf; ++f) { 58319be780dSMark Adams Kokkos::parallel_for(Kokkos::ThreadVectorRange(team, 0, (int)Nb), [=](int b) { 58419be780dSMark Adams //for (int b = 0; b < Nb; ++b) { 58519be780dSMark Adams LandauIdx idx = maps[grid]->gIdx[loc_elem][f][b]; 586af0767daSMark Adams if (idx >= 0) { 58719be780dSMark Adams coef[f * Nb + b] = d_vertex_f[idx + moffset]; // xarray data, not IP, need raw array to deal with CPU assemble case (not used) 588af0767daSMark Adams } else { 589af0767daSMark Adams idx = -idx - 1; 59019be780dSMark Adams coef[f * Nb + b] = 0; 5918a6f2e61SMark Adams for (int q = 0; q < maps[grid]->num_face; q++) { 5928a6f2e61SMark Adams PetscInt id = maps[grid]->c_maps[idx][q].gid; 5938a6f2e61SMark Adams PetscScalar scale = maps[grid]->c_maps[idx][q].scale; 594f26f10aaSMark Adams if (id >= 0) coef[f * Nb + b] += scale * d_vertex_f[id + moffset]; 595af0767daSMark Adams } 596af0767daSMark Adams } 59719be780dSMark Adams }); 59819be780dSMark Adams }); 599af0767daSMark Adams } 60019be780dSMark Adams team.team_barrier(); 601a587d139SMark Kokkos::parallel_for(Kokkos::TeamThreadRange(team, 0, Nq), [=](int myQi) { 6028fdabdddSMark Adams const PetscReal *const invJ = &invJe[myQi * dim * dim]; // b_elem_idx: batch element index 603a587d139SMark const PetscReal *Bq = &d_BB[myQi * Nb], *Dq = &d_DD[myQi * Nb * dim]; 6048fdabdddSMark Adams Kokkos::parallel_for(Kokkos::ThreadVectorRange(team, 0, (int)loc_Nf), [=](int f) { 605a587d139SMark PetscInt b, e, d; 606e8d2b73aSMark Adams PetscReal refSpaceDer[LANDAU_DIM]; 6078fdabdddSMark Adams const PetscInt idx = d_ipf_offset[grid] + f * loc_nip + loc_elem * Nq + myQi; 6088fdabdddSMark Adams d_fdf_k(b_id, 0, idx) = 0.0; 609a587d139SMark for (d = 0; d < LANDAU_DIM; ++d) refSpaceDer[d] = 0.0; 610a587d139SMark for (b = 0; b < Nb; ++b) { 61119be780dSMark Adams d_fdf_k(b_id, 0, idx) += Bq[b] * PetscRealPart(coef[f * Nb + b]); 61219be780dSMark Adams for (d = 0; d < dim; ++d) refSpaceDer[d] += Dq[b * dim + d] * PetscRealPart(coef[f * Nb + b]); 613a587d139SMark } 614a587d139SMark for (d = 0; d < dim; ++d) { 615ad540459SPierre Jolivet for (e = 0, d_fdf_k(b_id, d + 1, idx) = 0.0; e < dim; ++e) d_fdf_k(b_id, d + 1, idx) += invJ[e * dim + d] * refSpaceDer[e]; 616a587d139SMark } 6178a6f2e61SMark Adams }); // f 6188a6f2e61SMark Adams }); // myQi 6198a6f2e61SMark Adams } 62019be780dSMark Adams team.team_barrier(); 62119be780dSMark Adams } // 'grid' scope 6228a6f2e61SMark Adams }); // global elems - fdf 6238a6f2e61SMark Adams Kokkos::fence(); 624bfbbad94Smarkadams4 PetscCall(PetscLogGpuTimeEnd()); 6259566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(events[8], 0, 0, 0, 0)); 626e6118d12SMark Adams // Jacobian 627d9008a5dSMark Adams int maximum_shared_mem_size = 64000; 628a16fd2c9SJacob Faibussowitsch PetscDevice device; 629a16fd2c9SJacob Faibussowitsch 630a16fd2c9SJacob Faibussowitsch PetscCall(PetscDeviceGetDefault_Internal(&device)); 631a16fd2c9SJacob Faibussowitsch PetscCall(PetscDeviceGetAttribute(device, PETSC_DEVICE_ATTR_SIZE_T_SHARED_MEM_PER_BLOCK, &maximum_shared_mem_size)); 632d9008a5dSMark Adams const int jac_scr_bytes = 2 * (g2_scr_t::shmem_size(dim, Nf_max, Nq) + g3_scr_t::shmem_size(dim, dim, Nf_max, Nq)); 633d9008a5dSMark Adams const int jac_shared_level = (jac_scr_bytes > maximum_shared_mem_size) ? 1 : KOKKOS_SHARED_LEVEL; 634*ae6bf4a8Smarkadams4 // device function/lambda 635d71ae5a4SJacob Faibussowitsch auto jac_lambda = KOKKOS_LAMBDA(const team_member team) 636d71ae5a4SJacob Faibussowitsch { 6378fdabdddSMark Adams const PetscInt b_Nelem = d_elem_offset[num_grids], b_elem_idx = team.league_rank() % b_Nelem, b_id = team.league_rank() / b_Nelem; 6388a6f2e61SMark Adams // find my grid 6398fdabdddSMark Adams PetscInt grid = 0; 6408fdabdddSMark Adams while (b_elem_idx >= d_elem_offset[grid + 1]) grid++; 6418a6f2e61SMark Adams { 64219be780dSMark Adams const PetscInt loc_Nf = d_species_offset[grid + 1] - d_species_offset[grid], loc_elem = b_elem_idx - d_elem_offset[grid]; 6438fdabdddSMark Adams const PetscInt moffset = LAND_MOFFSET(b_id, grid, batch_sz, num_grids, d_mat_offset); 644bfbbad94Smarkadams4 const PetscInt f_off = d_species_offset[grid]; 645bfbbad94Smarkadams4 #ifdef LAND_SUPPORT_CPU_ASS 646bfbbad94Smarkadams4 const PetscInt totDim = loc_Nf * Nq; 647bfbbad94Smarkadams4 #endif 648d9008a5dSMark Adams g2_scr_t g2(team.team_scratch(jac_shared_level), dim, loc_Nf, Nq); 649d9008a5dSMark Adams g3_scr_t g3(team.team_scratch(jac_shared_level), dim, dim, loc_Nf, Nq); 650d9008a5dSMark Adams g2_scr_t gg2(team.team_scratch(jac_shared_level), dim, loc_Nf, Nq); 651d9008a5dSMark Adams g3_scr_t gg3(team.team_scratch(jac_shared_level), dim, dim, loc_Nf, Nq); 652e0eea495SMark // get g2[] & g3[] 653e0eea495SMark Kokkos::parallel_for(Kokkos::TeamThreadRange(team, 0, Nq), [=](int myQi) { 654e0eea495SMark using Kokkos::parallel_reduce; 6558fdabdddSMark Adams const PetscInt jpidx_glb = d_ip_offset[grid] + loc_elem * Nq + myQi; 6568fdabdddSMark Adams const PetscReal *invJ = &d_invJ_k(jpidx_glb * dim * dim); 6578fdabdddSMark Adams const PetscReal vj[3] = {d_x[jpidx_glb], d_y[jpidx_glb], d_z ? d_z[jpidx_glb] : 0}, wj = d_w[jpidx_glb]; 6588a6f2e61SMark Adams landau_inner_red::TensorValueType gg_temp; // reduce on part of gg2 and g33 for IP jpidx_g 6599371c9d4SSatish Balay Kokkos::parallel_reduce( 6609371c9d4SSatish Balay Kokkos::ThreadVectorRange(team, (int)d_ip_offset[num_grids]), 6619371c9d4SSatish Balay [=](const int &ipidx, landau_inner_red::TensorValueType &ggg) { 662e8d2b73aSMark Adams const PetscReal wi = d_w[ipidx], x = d_x[ipidx], y = d_y[ipidx]; 66352cdd6eaSMark PetscReal temp1[3] = {0, 0, 0}, temp2 = 0; 6646b664d00Smarkadams4 PetscInt fieldB, d2, d3, f_off_r, grid_r, ipidx_g, nip_loc_r, loc_Nf_r; 665e0eea495SMark #if LANDAU_DIM == 2 6668a6f2e61SMark Adams PetscReal Ud[2][2], Uk[2][2], mask = (PetscAbs(vj[0] - x) < 100 * PETSC_SQRT_MACHINE_EPSILON && PetscAbs(vj[1] - y) < 100 * PETSC_SQRT_MACHINE_EPSILON) ? 0. : 1.; 6678a6f2e61SMark Adams LandauTensor2D(vj, x, y, Ud, Uk, mask); 66852cdd6eaSMark #else 6697620afa1SMark Adams PetscReal U[3][3], z = d_z[ipidx], mask = (PetscAbs(vj[0]-x) < 100*PETSC_SQRT_MACHINE_EPSILON && PetscAbs(vj[1]-y) < 100*PETSC_SQRT_MACHINE_EPSILON && PetscAbs(vj[2]-z) < 100*PETSC_SQRT_MACHINE_EPSILON) ? 0. : 1.; 6708a6f2e61SMark Adams LandauTensor3D(vj, x, y, z, U, mask); 67152cdd6eaSMark #endif 6728a6f2e61SMark Adams grid_r = 0; 6738a6f2e61SMark Adams while (ipidx >= d_ip_offset[grid_r + 1]) grid_r++; // yuck search for grid 6748a6f2e61SMark Adams f_off_r = d_species_offset[grid_r]; 6758a6f2e61SMark Adams ipidx_g = ipidx - d_ip_offset[grid_r]; 6768a6f2e61SMark Adams nip_loc_r = d_numCells[grid_r] * Nq; 6778fdabdddSMark Adams loc_Nf_r = d_species_offset[grid_r + 1] - d_species_offset[grid_r]; 678*ae6bf4a8Smarkadams4 for (fieldB = 0; fieldB < loc_Nf_r; ++fieldB) { // fieldB is \beta d_lambdas[grid][grid_r] 6796b664d00Smarkadams4 const PetscInt idx = d_ipf_offset[grid_r] + fieldB * nip_loc_r + ipidx_g; 680*ae6bf4a8Smarkadams4 temp1[0] += d_fdf_k(b_id, 1, idx) * d_beta[fieldB + f_off_r] * d_invMass[fieldB + f_off_r] * d_lambdas[LANDAU_MAX_GRIDS * grid + grid_r]; 681*ae6bf4a8Smarkadams4 temp1[1] += d_fdf_k(b_id, 2, idx) * d_beta[fieldB + f_off_r] * d_invMass[fieldB + f_off_r] * d_lambdas[LANDAU_MAX_GRIDS * grid + grid_r]; 68252cdd6eaSMark #if LANDAU_DIM == 3 683*ae6bf4a8Smarkadams4 temp1[2] += d_fdf_k(b_id, 3, idx) * d_beta[fieldB + f_off_r] * d_invMass[fieldB + f_off_r] * d_lambdas[LANDAU_MAX_GRIDS * grid + grid_r]; 68452cdd6eaSMark #endif 685*ae6bf4a8Smarkadams4 temp2 += d_fdf_k(b_id, 0, idx) * d_beta[fieldB + f_off_r] * d_lambdas[LANDAU_MAX_GRIDS * grid + grid_r]; 68652cdd6eaSMark } 68752cdd6eaSMark temp1[0] *= wi; 68852cdd6eaSMark temp1[1] *= wi; 68952cdd6eaSMark #if LANDAU_DIM == 3 69052cdd6eaSMark temp1[2] *= wi; 69152cdd6eaSMark #endif 69252cdd6eaSMark temp2 *= wi; 69352cdd6eaSMark #if LANDAU_DIM == 2 69452cdd6eaSMark for (d2 = 0; d2 < 2; d2++) { 695e0eea495SMark for (d3 = 0; d3 < 2; ++d3) { 696e0eea495SMark /* K = U * grad(f): g2=e: i,A */ 69752cdd6eaSMark ggg.gg2[d2] += Uk[d2][d3] * temp1[d3]; 698e0eea495SMark /* D = -U * (I \kron (fx)): g3=f: i,j,A */ 69952cdd6eaSMark ggg.gg3[d2][d3] += Ud[d2][d3] * temp2; 700e0eea495SMark } 701e0eea495SMark } 702e0eea495SMark #else 703e0eea495SMark for (d2 = 0; d2 < 3; ++d2) { 704e0eea495SMark for (d3 = 0; d3 < 3; ++d3) { 705e0eea495SMark /* K = U * grad(f): g2 = e: i,A */ 70652cdd6eaSMark ggg.gg2[d2] += U[d2][d3]*temp1[d3]; 707e0eea495SMark /* D = -U * (I \kron (fx)): g3 = f: i,j,A */ 70852cdd6eaSMark ggg.gg3[d2][d3] += U[d2][d3]*temp2; 709e0eea495SMark } 710e0eea495SMark } 711e0eea495SMark #endif 7129371c9d4SSatish Balay }, 7139371c9d4SSatish Balay Kokkos::Sum<landau_inner_red::TensorValueType>(gg_temp)); 71452cdd6eaSMark // add alpha and put in gg2/3 7156b664d00Smarkadams4 Kokkos::parallel_for(Kokkos::ThreadVectorRange(team, (int)loc_Nf), [&](const int &fieldA) { // \alpha 71652cdd6eaSMark PetscInt d2, d3; 71752cdd6eaSMark for (d2 = 0; d2 < dim; d2++) { 7188a6f2e61SMark Adams gg2(d2, fieldA, myQi) = gg_temp.gg2[d2] * d_alpha[fieldA + f_off]; 719ad540459SPierre Jolivet for (d3 = 0; d3 < dim; d3++) gg3(d2, d3, fieldA, myQi) = -gg_temp.gg3[d2][d3] * d_alpha[fieldA + f_off] * d_invMass[fieldA + f_off]; 72052cdd6eaSMark } 721e0eea495SMark }); 72252cdd6eaSMark /* add electric field term once per IP */ 7239371c9d4SSatish Balay Kokkos::parallel_for(Kokkos::ThreadVectorRange(team, (int)loc_Nf), [&](const int &fieldA) { gg2(dim - 1, fieldA, myQi) += d_Eq_m[fieldA + f_off]; }); 7248fdabdddSMark Adams Kokkos::parallel_for(Kokkos::ThreadVectorRange(team, (int)loc_Nf), [=](const int &fieldA) { 725e0eea495SMark int d, d2, d3, dp; 726e0eea495SMark /* Jacobian transform - g2, g3 - per thread (2D) */ 727e0eea495SMark for (d = 0; d < dim; ++d) { 72852cdd6eaSMark g2(d, fieldA, myQi) = 0; 729e0eea495SMark for (d2 = 0; d2 < dim; ++d2) { 7308fdabdddSMark Adams g2(d, fieldA, myQi) += invJ[d * dim + d2] * gg2(d2, fieldA, myQi); 73152cdd6eaSMark g3(d, d2, fieldA, myQi) = 0; 732e0eea495SMark for (d3 = 0; d3 < dim; ++d3) { 733ad540459SPierre Jolivet for (dp = 0; dp < dim; ++dp) g3(d, d2, fieldA, myQi) += invJ[d * dim + d3] * gg3(d3, dp, fieldA, myQi) * invJ[d2 * dim + dp]; 734e0eea495SMark } 73552cdd6eaSMark g3(d, d2, fieldA, myQi) *= wj; 736e0eea495SMark } 73752cdd6eaSMark g2(d, fieldA, myQi) *= wj; 738e0eea495SMark } 739e0eea495SMark }); 74052cdd6eaSMark }); // Nq 741e0eea495SMark team.team_barrier(); 7421eec90e4SMark Adams { /* assemble */ 7438fdabdddSMark Adams for (PetscInt fieldA = 0; fieldA < loc_Nf; fieldA++) { 744930e68a5SMark Adams /* assemble */ 7451eec90e4SMark Adams Kokkos::parallel_for(Kokkos::TeamThreadRange(team, 0, Nb), [=](int f) { 7461eec90e4SMark Adams Kokkos::parallel_for(Kokkos::ThreadVectorRange(team, 0, Nb), [=](int g) { 7471eec90e4SMark Adams PetscScalar t = 0; 7481eec90e4SMark Adams for (int qj = 0; qj < Nq; qj++) { // look at others integration points 749e0eea495SMark const PetscReal *BJq = &d_BB[qj * Nb], *DIq = &d_DD[qj * Nb * dim]; 7501eec90e4SMark Adams for (int d = 0; d < dim; ++d) { 7511eec90e4SMark Adams t += DIq[f * dim + d] * g2(d, fieldA, qj) * BJq[g]; 752ad540459SPierre Jolivet for (int d2 = 0; d2 < dim; ++d2) t += DIq[f * dim + d] * g3(d, d2, fieldA, qj) * DIq[g * dim + d2]; 753e0eea495SMark } 754930e68a5SMark Adams } 7558a6f2e61SMark Adams if (elem_mat_num_cells_max_grid) { // CPU assembly 756bfbbad94Smarkadams4 #ifdef LAND_SUPPORT_CPU_ASS 7571eec90e4SMark Adams const PetscInt fOff = (fieldA * Nb + f) * totDim + fieldA * Nb + g; 7588fdabdddSMark Adams d_elem_mats(b_id, grid, loc_elem, fOff) = t; 759bfbbad94Smarkadams4 #endif 76019be780dSMark Adams } else { 7613ba16761SJacob Faibussowitsch static_cast<void>(landau_mat_assemble(d_mat, d_coo_vals, t, f, g, Nb, moffset, loc_elem, fieldA, maps[grid], d_coo_elem_offsets, d_coo_elem_fullNb, d_coo_elem_point_offsets, b_elem_idx, b_id * coo_sz_batch)); 76219be780dSMark Adams } 7631eec90e4SMark Adams }); 7641eec90e4SMark Adams }); 7651eec90e4SMark Adams } 766a587d139SMark } 76719be780dSMark Adams } // scope with 'grid' 76881451871SMark Adams }; 7699566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(events[4], 0, 0, 0, 0)); 7709566063dSJacob Faibussowitsch PetscCall(PetscLogGpuTimeBegin()); 771d9008a5dSMark Adams PetscCall(PetscInfo(plex[0], "Jacobian shared memory size: %d bytes in level %s (max shared=%d), num cells total=%d, team size=%d, vector size=%d, #face=%d, Nf_max=%d\n", jac_scr_bytes, jac_shared_level == 0 ? "local" : "global", maximum_shared_mem_size, num_cells_batch * batch_sz, team_size, vector_size, nfaces, Nf_max)); 772d9008a5dSMark Adams Kokkos::parallel_for("Jacobian", Kokkos::TeamPolicy<>(num_cells_batch * batch_sz, team_size, vector_size).set_scratch_size(jac_shared_level, Kokkos::PerTeam(jac_scr_bytes)), jac_lambda); // Kokkos::LaunchBounds<512,2> 773d9008a5dSMark Adams Kokkos::fence(); 7749566063dSJacob Faibussowitsch PetscCall(PetscLogGpuTimeEnd()); 7759566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(events[4], 0, 0, 0, 0)); 77619be780dSMark Adams if (d_vertex_f_k) delete d_vertex_f_k; 777dbabbaf5SMark Adams } else { // mass 7789566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(events[16], 0, 0, 0, 0)); 7799566063dSJacob Faibussowitsch PetscCall(PetscLogGpuTimeBegin()); 780dbabbaf5SMark Adams PetscCall(PetscInfo(plex[0], "Mass team size=%d vector size=%d #face=%d Nb=%" PetscInt_FMT ", %s assembly\n", team_size, vector_size, nfaces, Nb, d_coo_vals ? "COO" : "CSR")); 7819371c9d4SSatish Balay Kokkos::parallel_for( 7829371c9d4SSatish Balay "Mass", Kokkos::TeamPolicy<>(num_cells_batch * batch_sz, team_size, vector_size), KOKKOS_LAMBDA(const team_member team) { // Kokkos::LaunchBounds<512,4> 7838fdabdddSMark Adams const PetscInt b_Nelem = d_elem_offset[num_grids], b_elem_idx = team.league_rank() % b_Nelem, b_id = team.league_rank() / b_Nelem; 7848a6f2e61SMark Adams // find my grid 7858fdabdddSMark Adams PetscInt grid = 0; 7868fdabdddSMark Adams while (b_elem_idx >= d_elem_offset[grid + 1]) grid++; 7878a6f2e61SMark Adams { 788bfbbad94Smarkadams4 const PetscInt loc_Nf = d_species_offset[grid + 1] - d_species_offset[grid], loc_elem = b_elem_idx - d_elem_offset[grid], jpidx_0 = d_ip_offset[grid] + loc_elem * Nq; 789bfbbad94Smarkadams4 #ifdef LAND_SUPPORT_CPU_ASS 790bfbbad94Smarkadams4 const PetscInt totDim = loc_Nf * Nq; 791bfbbad94Smarkadams4 #endif 7928fdabdddSMark Adams const PetscInt moffset = LAND_MOFFSET(b_id, grid, batch_sz, num_grids, d_mat_offset); 7938fdabdddSMark Adams for (int fieldA = 0; fieldA < loc_Nf; fieldA++) { 7941eec90e4SMark Adams /* assemble */ 7951eec90e4SMark Adams Kokkos::parallel_for(Kokkos::TeamThreadRange(team, 0, Nb), [=](int f) { 7961eec90e4SMark Adams Kokkos::parallel_for(Kokkos::ThreadVectorRange(team, 0, Nb), [=](int g) { 7971eec90e4SMark Adams PetscScalar t = 0; 7981eec90e4SMark Adams for (int qj = 0; qj < Nq; qj++) { // look at others integration points 7991eec90e4SMark Adams const PetscReal *BJq = &d_BB[qj * Nb]; 8008fdabdddSMark Adams const PetscInt jpidx_glb = jpidx_0 + qj; 8018a6f2e61SMark Adams if (dim == 2) { 8028fdabdddSMark Adams t += BJq[f] * d_w_k(jpidx_glb) * shift * BJq[g] * 2. * PETSC_PI; 8038a6f2e61SMark Adams } else { 8048fdabdddSMark Adams t += BJq[f] * d_w_k(jpidx_glb) * shift * BJq[g]; 8051eec90e4SMark Adams } 8068a6f2e61SMark Adams } 8078a6f2e61SMark Adams if (elem_mat_num_cells_max_grid) { 808bfbbad94Smarkadams4 #ifdef LAND_SUPPORT_CPU_ASS 8091eec90e4SMark Adams const PetscInt fOff = (fieldA * Nb + f) * totDim + fieldA * Nb + g; 8108fdabdddSMark Adams d_elem_mats(b_id, grid, loc_elem, fOff) = t; 811bfbbad94Smarkadams4 #endif 812ad4b5651SMark Adams } else { 8133ba16761SJacob Faibussowitsch static_cast<void>(landau_mat_assemble(d_mat, d_coo_vals, t, f, g, Nb, moffset, loc_elem, fieldA, maps[grid], d_coo_elem_offsets, d_coo_elem_fullNb, d_coo_elem_point_offsets, b_elem_idx, b_id * coo_sz_batch)); 814ad4b5651SMark Adams } 815e0eea495SMark }); 816e0eea495SMark }); 81713241b68SMark Adams } // field 81813241b68SMark Adams } // grid 8191eec90e4SMark Adams }); 820d9008a5dSMark Adams Kokkos::fence(); 8219566063dSJacob Faibussowitsch PetscCall(PetscLogGpuTimeEnd()); 8229566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(events[16], 0, 0, 0, 0)); 8231eec90e4SMark Adams } 824bfc784b7SMark Adams if (d_coo_vals) { 8259566063dSJacob Faibussowitsch PetscCall(MatSetValuesCOO(JacP, d_coo_vals, ADD_VALUES)); 826bfbbad94Smarkadams4 #ifndef LAND_SUPPORT_CPU_ASS 827bfbbad94Smarkadams4 Kokkos::fence(); // for timers 828bfbbad94Smarkadams4 #endif 829bfc784b7SMark Adams } else if (elem_mat_num_cells_max_grid) { // CPU assembly 830bfbbad94Smarkadams4 #ifdef LAND_SUPPORT_CPU_ASS 8318fdabdddSMark Adams Kokkos::View<PetscScalar ****, Kokkos::LayoutRight>::HostMirror h_elem_mats = Kokkos::create_mirror_view(d_elem_mats); 832e0eea495SMark Kokkos::deep_copy(h_elem_mats, d_elem_mats); 833d618d24fSMark Adams PetscCheck(!container, PETSC_COMM_SELF, PETSC_ERR_PLIB, "?????"); 8348fdabdddSMark Adams for (PetscInt b_id = 0; b_id < batch_sz; b_id++) { // OpenMP (once) 8358a6f2e61SMark Adams for (PetscInt grid = 0; grid < num_grids; grid++) { 8368a6f2e61SMark Adams PetscSection section, globalSection; 8378a6f2e61SMark Adams PetscInt cStart, cEnd; 8388fdabdddSMark Adams Mat B = subJ[LAND_PACK_IDX(b_id, grid)]; 8398fdabdddSMark Adams PetscInt moffset = LAND_MOFFSET(b_id, grid, batch_sz, num_grids, a_mat_offset), nloc, nzl, colbuf[1024], row; 8408fdabdddSMark Adams const PetscInt *cols; 8418fdabdddSMark Adams const PetscScalar *vals; 8429566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(events[5], 0, 0, 0, 0)); 8439566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(plex[grid], 0, &cStart, &cEnd)); 8449566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(plex[grid], §ion)); 8459566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(plex[grid], &globalSection)); 8469566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(events[5], 0, 0, 0, 0)); 8479566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(events[6], 0, 0, 0, 0)); 8488a6f2e61SMark Adams for (PetscInt ej = cStart; ej < cEnd; ++ej) { 8498fdabdddSMark Adams const PetscScalar *elMat = &h_elem_mats(b_id, grid, ej - cStart, 0); 8509566063dSJacob Faibussowitsch PetscCall(DMPlexMatSetClosure(plex[grid], section, globalSection, B, ej, elMat, ADD_VALUES)); 8518a6f2e61SMark Adams if (grid == 0 && ej == -1) { 8528fdabdddSMark Adams const PetscInt loc_Nf = a_species_offset[grid + 1] - a_species_offset[grid], totDim = loc_Nf * Nq; 853e0eea495SMark int d, f; 8548a6f2e61SMark Adams PetscPrintf(PETSC_COMM_SELF, "Kokkos Element matrix %d/%d\n", 1, (int)a_numCells[grid]); 855e0eea495SMark for (d = 0; d < totDim; ++d) { 85652cdd6eaSMark for (f = 0; f < totDim; ++f) PetscPrintf(PETSC_COMM_SELF, " %12.5e", PetscRealPart(elMat[d * totDim + f])); 85752cdd6eaSMark PetscPrintf(PETSC_COMM_SELF, "\n"); 858e0eea495SMark } 859e8d2b73aSMark Adams exit(14); 860e0eea495SMark } 861e0eea495SMark } 8628fdabdddSMark Adams // move nest matrix to global JacP 8639566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 8649566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 8659566063dSJacob Faibussowitsch PetscCall(MatGetSize(B, &nloc, NULL)); 8668a6f2e61SMark Adams for (int i = 0; i < nloc; i++) { 8679566063dSJacob Faibussowitsch PetscCall(MatGetRow(B, i, &nzl, &cols, &vals)); 86863a3b9bcSJacob Faibussowitsch PetscCheck(nzl <= 1024, PetscObjectComm((PetscObject)B), PETSC_ERR_PLIB, "Row too big: %" PetscInt_FMT, nzl); 8698a6f2e61SMark Adams for (int j = 0; j < nzl; j++) colbuf[j] = cols[j] + moffset; 8708a6f2e61SMark Adams row = i + moffset; 8719566063dSJacob Faibussowitsch PetscCall(MatSetValues(JacP, 1, &row, nzl, colbuf, vals, ADD_VALUES)); 8729566063dSJacob Faibussowitsch PetscCall(MatRestoreRow(B, i, &nzl, &cols, &vals)); 8738a6f2e61SMark Adams } 8749566063dSJacob Faibussowitsch PetscCall(MatDestroy(&subJ[LAND_PACK_IDX(b_id, grid)])); 8759566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(events[6], 0, 0, 0, 0)); 8768a6f2e61SMark Adams } // grids 877a587d139SMark } 878bfbbad94Smarkadams4 #else 879bfbbad94Smarkadams4 SETERRQ(PETSC_COMM_SELF, PETSC_ERR_PLIB, "CPU assembly not supported"); 880bfbbad94Smarkadams4 #endif 8818fdabdddSMark Adams } 8823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 883e0eea495SMark } 884e0eea495SMark } // extern "C" 8858d80707aSStefano Zampini #endif 886