xref: /petsc/src/ts/utils/dmplexlandau/kokkos/landau.kokkos.cxx (revision ae6bf4a87da0f350541e74dbf99ff8f3b2482744)
1e0eea495SMark /*
2e0eea495SMark   Implements the Kokkos kernel
3e0eea495SMark */
4e0eea495SMark #include <petscconf.h>
58d80707aSStefano Zampini #if defined(PETSC_HAVE_CUDA_CLANG)
68d80707aSStefano Zampini   #include <petsclandau.h>
78d80707aSStefano Zampini   #define LANDAU_NOT_IMPLEMENTED SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Not supported with CLANG")
8ffb3bc9aSStefano Zampini PetscErrorCode LandauKokkosJacobian(DM[], const PetscInt, const PetscInt, const PetscInt, const PetscInt[], PetscReal[], PetscScalar[], const PetscScalar[], const LandauStaticData *, const PetscReal, const PetscLogEvent[], const PetscInt[], const PetscInt[], Mat[], Mat)
98d80707aSStefano Zampini {
108d80707aSStefano Zampini   LANDAU_NOT_IMPLEMENTED;
118d80707aSStefano Zampini }
12ffb3bc9aSStefano Zampini PetscErrorCode LandauKokkosCreateMatMaps(P4estVertexMaps *, pointInterpolationP4est (*)[LANDAU_MAX_Q_FACE], PetscInt[], PetscInt, PetscInt)
138d80707aSStefano Zampini {
148d80707aSStefano Zampini   LANDAU_NOT_IMPLEMENTED;
158d80707aSStefano Zampini }
16ffb3bc9aSStefano Zampini PetscErrorCode LandauKokkosDestroyMatMaps(P4estVertexMaps *, PetscInt)
178d80707aSStefano Zampini {
188d80707aSStefano Zampini   LANDAU_NOT_IMPLEMENTED;
198d80707aSStefano Zampini }
20ffb3bc9aSStefano Zampini PetscErrorCode LandauKokkosStaticDataSet(DM, const PetscInt, const PetscInt, const PetscInt, PetscInt[], PetscInt[], PetscInt[], PetscReal[], PetscReal[], PetscReal[], PetscReal[], PetscReal[], PetscReal[], PetscReal[], PetscReal[], LandauStaticData *)
218d80707aSStefano Zampini {
228d80707aSStefano Zampini   LANDAU_NOT_IMPLEMENTED;
238d80707aSStefano Zampini }
24ffb3bc9aSStefano Zampini PetscErrorCode LandauKokkosStaticDataClear(LandauStaticData *)
258d80707aSStefano Zampini {
268d80707aSStefano Zampini   LANDAU_NOT_IMPLEMENTED;
278d80707aSStefano Zampini }
288d80707aSStefano Zampini #else
2911d22bbfSJunchao Zhang   #include <petscvec_kokkos.hpp>
308d80707aSStefano Zampini   #include <petsclandau.h>
31e0eea495SMark   #include <petsc/private/dmpleximpl.h> /*I   "petscdmplex.h"   I*/
32a16fd2c9SJacob Faibussowitsch   #include <petsc/private/deviceimpl.h>
33e0eea495SMark   #include <petscts.h>
34a587d139SMark 
35e0eea495SMark   #include <Kokkos_Core.hpp>
36e0eea495SMark   #include <cstdio>
37e0eea495SMark typedef Kokkos::TeamPolicy<>::member_type team_member;
38e0eea495SMark   #include "../land_tensors.h"
39a587d139SMark   #include <petscaijdevice.h>
40e0eea495SMark 
41d71ae5a4SJacob Faibussowitsch namespace landau_inner_red
42d71ae5a4SJacob Faibussowitsch { // namespace helps with name resolution in reduction identity
4352cdd6eaSMark template <class ScalarType>
44e0eea495SMark struct array_type {
4552cdd6eaSMark   ScalarType gg2[LANDAU_DIM];
4652cdd6eaSMark   ScalarType gg3[LANDAU_DIM][LANDAU_DIM];
47e0eea495SMark 
48e0eea495SMark   KOKKOS_INLINE_FUNCTION // Default constructor - Initialize to 0's
49d71ae5a4SJacob Faibussowitsch   array_type()
50d71ae5a4SJacob Faibussowitsch   {
51e0eea495SMark     for (int j = 0; j < LANDAU_DIM; j++) {
5252cdd6eaSMark       gg2[j] = 0;
53ad540459SPierre Jolivet       for (int k = 0; k < LANDAU_DIM; k++) gg3[j][k] = 0;
54e0eea495SMark     }
55e0eea495SMark   }
56e0eea495SMark   KOKKOS_INLINE_FUNCTION // Copy Constructor
57d71ae5a4SJacob Faibussowitsch   array_type(const array_type &rhs)
58d71ae5a4SJacob Faibussowitsch   {
59e0eea495SMark     for (int j = 0; j < LANDAU_DIM; j++) {
6052cdd6eaSMark       gg2[j] = rhs.gg2[j];
61ad540459SPierre Jolivet       for (int k = 0; k < LANDAU_DIM; k++) gg3[j][k] = rhs.gg3[j][k];
62e0eea495SMark     }
63e0eea495SMark   }
64e0eea495SMark   KOKKOS_INLINE_FUNCTION // add operator
659371c9d4SSatish Balay     array_type &
66d71ae5a4SJacob Faibussowitsch     operator+=(const array_type &src)
67d71ae5a4SJacob Faibussowitsch   {
68e0eea495SMark     for (int j = 0; j < LANDAU_DIM; j++) {
6952cdd6eaSMark       gg2[j] += src.gg2[j];
70ad540459SPierre Jolivet       for (int k = 0; k < LANDAU_DIM; k++) gg3[j][k] += src.gg3[j][k];
71e0eea495SMark     }
72e0eea495SMark     return *this;
73e0eea495SMark   }
74e0eea495SMark   KOKKOS_INLINE_FUNCTION // volatile add operator
759371c9d4SSatish Balay     void
76d71ae5a4SJacob Faibussowitsch     operator+=(const volatile array_type &src) volatile
77d71ae5a4SJacob Faibussowitsch   {
78e0eea495SMark     for (int j = 0; j < LANDAU_DIM; j++) {
7952cdd6eaSMark       gg2[j] += src.gg2[j];
80ad540459SPierre Jolivet       for (int k = 0; k < LANDAU_DIM; k++) gg3[j][k] += src.gg3[j][k];
81e0eea495SMark     }
82e0eea495SMark   }
83e0eea495SMark };
8452cdd6eaSMark typedef array_type<PetscReal> TensorValueType; // used to simplify code below
859371c9d4SSatish Balay } // namespace landau_inner_red
86e0eea495SMark 
87d71ae5a4SJacob Faibussowitsch namespace Kokkos
88d71ae5a4SJacob Faibussowitsch { //reduction identity must be defined in Kokkos namespace
89e0eea495SMark template <>
9052cdd6eaSMark struct reduction_identity<landau_inner_red::TensorValueType> {
919371c9d4SSatish Balay   KOKKOS_FORCEINLINE_FUNCTION static landau_inner_red::TensorValueType sum() { return landau_inner_red::TensorValueType(); }
92e0eea495SMark };
939371c9d4SSatish Balay } // namespace Kokkos
94e0eea495SMark 
95e0eea495SMark extern "C" {
96d71ae5a4SJacob Faibussowitsch PetscErrorCode LandauKokkosCreateMatMaps(P4estVertexMaps maps[], pointInterpolationP4est (*pointMaps)[LANDAU_MAX_Q_FACE], PetscInt Nf[], PetscInt Nq, PetscInt grid)
97d71ae5a4SJacob Faibussowitsch {
98a587d139SMark   P4estVertexMaps                                                                                                                                     h_maps; /* host container */
998a6f2e61SMark Adams   const Kokkos::View<pointInterpolationP4est *[LANDAU_MAX_Q_FACE], Kokkos::LayoutRight, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>>   h_points((pointInterpolationP4est *)pointMaps, maps[grid].num_reduced);
1008a6f2e61SMark Adams   const Kokkos::View<LandauIdx *[LANDAU_MAX_SPECIES][LANDAU_MAX_NQ], Kokkos::LayoutRight, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_gidx((LandauIdx *)maps[grid].gIdx, maps[grid].num_elements);
1018a6f2e61SMark Adams   Kokkos::View<pointInterpolationP4est *[LANDAU_MAX_Q_FACE], Kokkos::LayoutRight>   *d_points = new Kokkos::View<pointInterpolationP4est *[LANDAU_MAX_Q_FACE], Kokkos::LayoutRight>("points", maps[grid].num_reduced);
1028a6f2e61SMark Adams   Kokkos::View<LandauIdx *[LANDAU_MAX_SPECIES][LANDAU_MAX_NQ], Kokkos::LayoutRight> *d_gidx   = new Kokkos::View<LandauIdx *[LANDAU_MAX_SPECIES][LANDAU_MAX_NQ], Kokkos::LayoutRight>("gIdx", maps[grid].num_elements);
103a587d139SMark 
104a587d139SMark   PetscFunctionBegin;
105a587d139SMark   Kokkos::deep_copy(*d_gidx, h_gidx);
106a587d139SMark   Kokkos::deep_copy(*d_points, h_points);
1078a6f2e61SMark Adams   h_maps.num_elements = maps[grid].num_elements;
1088a6f2e61SMark Adams   h_maps.num_face     = maps[grid].num_face;
1098a6f2e61SMark Adams   h_maps.num_reduced  = maps[grid].num_reduced;
1108a6f2e61SMark Adams   h_maps.deviceType   = maps[grid].deviceType;
1118a6f2e61SMark Adams   h_maps.numgrids     = maps[grid].numgrids;
1128a6f2e61SMark Adams   h_maps.Nf           = Nf[grid];
113a587d139SMark   h_maps.c_maps       = (pointInterpolationP4est(*)[LANDAU_MAX_Q_FACE])d_points->data();
1148a6f2e61SMark Adams   maps[grid].vp1      = (void *)d_points;
115a587d139SMark   h_maps.gIdx         = (LandauIdx(*)[LANDAU_MAX_SPECIES][LANDAU_MAX_NQ])d_gidx->data();
1168a6f2e61SMark Adams   maps[grid].vp2      = (void *)d_gidx;
117a587d139SMark   {
118a587d139SMark     Kokkos::View<P4estVertexMaps, Kokkos::HostSpace> h_maps_k(&h_maps);
11911d22bbfSJunchao Zhang     Kokkos::View<P4estVertexMaps>                   *d_maps_k = new Kokkos::View<P4estVertexMaps>(Kokkos::create_mirror(Kokkos::DefaultExecutionSpace::memory_space(), h_maps_k));
120a587d139SMark     Kokkos::deep_copy(*d_maps_k, h_maps_k);
1218a6f2e61SMark Adams     maps[grid].d_self = d_maps_k->data();
1228a6f2e61SMark Adams     maps[grid].vp3    = (void *)d_maps_k;
123a587d139SMark   }
1243ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
125a587d139SMark }
126d71ae5a4SJacob Faibussowitsch PetscErrorCode LandauKokkosDestroyMatMaps(P4estVertexMaps maps[], PetscInt num_grids)
127d71ae5a4SJacob Faibussowitsch {
128362febeeSStefano Zampini   PetscFunctionBegin;
1298a6f2e61SMark Adams   for (PetscInt grid = 0; grid < num_grids; grid++) {
1308a6f2e61SMark Adams     auto a = static_cast<Kokkos::View<pointInterpolationP4est *[LANDAU_MAX_Q_FACE], Kokkos::LayoutRight> *>(maps[grid].vp1);
1318a6f2e61SMark Adams     auto b = static_cast<Kokkos::View<LandauIdx *[LANDAU_MAX_SPECIES][LANDAU_MAX_NQ], Kokkos::LayoutRight> *>(maps[grid].vp2);
1328a6f2e61SMark Adams     auto c = static_cast<Kokkos::View<P4estVertexMaps *> *>(maps[grid].vp3);
1339371c9d4SSatish Balay     delete a;
1349371c9d4SSatish Balay     delete b;
1359371c9d4SSatish Balay     delete c;
1368a6f2e61SMark Adams   }
1373ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
138a587d139SMark }
139a587d139SMark 
140*ae6bf4a8Smarkadams4 PetscErrorCode LandauKokkosStaticDataSet(DM plex, const PetscInt Nq, const PetscInt batch_sz, const PetscInt num_grids, PetscInt a_numCells[], PetscInt a_species_offset[], PetscInt a_mat_offset[], PetscReal a_nu_alpha[], PetscReal a_nu_beta[], PetscReal a_invMass[], PetscReal a_lambdas[], PetscReal a_invJ[], PetscReal a_x[], PetscReal a_y[], PetscReal a_z[], PetscReal a_w[], LandauStaticData *SData_d)
141d71ae5a4SJacob Faibussowitsch {
142e0eea495SMark   PetscReal       *BB, *DD;
143e8d2b73aSMark Adams   PetscTabulation *Tf;
1448a6f2e61SMark Adams   PetscInt         dim;
1458a6f2e61SMark Adams   PetscInt         Nb = Nq, ip_offset[LANDAU_MAX_GRIDS + 1], ipf_offset[LANDAU_MAX_GRIDS + 1], elem_offset[LANDAU_MAX_GRIDS + 1], nip, IPf_sz, Nftot;
146e8d2b73aSMark Adams   PetscDS          prob;
147e0eea495SMark 
148e0eea495SMark   PetscFunctionBegin;
1499566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(plex, &dim));
1509566063dSJacob Faibussowitsch   PetscCall(DMGetDS(plex, &prob));
15163a3b9bcSJacob Faibussowitsch   PetscCheck(LANDAU_DIM == dim, PETSC_COMM_WORLD, PETSC_ERR_PLIB, "dim %" PetscInt_FMT " != LANDAU_DIM %d", dim, LANDAU_DIM);
1529566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTabulation(prob, &Tf));
1539371c9d4SSatish Balay   BB           = Tf[0]->T[0];
1549371c9d4SSatish Balay   DD           = Tf[0]->T[1];
1558a6f2e61SMark Adams   ip_offset[0] = ipf_offset[0] = elem_offset[0] = 0;
1568a6f2e61SMark Adams   nip                                           = 0;
1578a6f2e61SMark Adams   IPf_sz                                        = 0;
1588a6f2e61SMark Adams   for (PetscInt grid = 0; grid < num_grids; grid++) {
1598a6f2e61SMark Adams     PetscInt nfloc        = a_species_offset[grid + 1] - a_species_offset[grid];
1608a6f2e61SMark Adams     elem_offset[grid + 1] = elem_offset[grid] + a_numCells[grid];
1618a6f2e61SMark Adams     nip += a_numCells[grid] * Nq;
1628a6f2e61SMark Adams     ip_offset[grid + 1] = nip;
1638a6f2e61SMark Adams     IPf_sz += Nq * nfloc * a_numCells[grid];
1648a6f2e61SMark Adams     ipf_offset[grid + 1] = IPf_sz;
1658a6f2e61SMark Adams   }
1668a6f2e61SMark Adams   Nftot = a_species_offset[num_grids];
1679566063dSJacob Faibussowitsch   PetscCall(PetscKokkosInitializeCheck());
168e8d2b73aSMark Adams   {
1698a6f2e61SMark Adams     const Kokkos::View<PetscReal *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_alpha(a_nu_alpha, Nftot);
1708a6f2e61SMark Adams     auto                                                                                                            alpha = new Kokkos::View<PetscReal *, Kokkos::LayoutLeft>("alpha", Nftot);
171e8d2b73aSMark Adams     SData_d->alpha                                                                                                        = static_cast<void *>(alpha);
1728a6f2e61SMark Adams     const Kokkos::View<PetscReal *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_beta(a_nu_beta, Nftot);
1738a6f2e61SMark Adams     auto                                                                                                            beta = new Kokkos::View<PetscReal *, Kokkos::LayoutLeft>("beta", Nftot);
174e8d2b73aSMark Adams     SData_d->beta                                                                                                        = static_cast<void *>(beta);
1758a6f2e61SMark Adams     const Kokkos::View<PetscReal *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_invMass(a_invMass, Nftot);
1768a6f2e61SMark Adams     auto                                                                                                            invMass = new Kokkos::View<PetscReal *, Kokkos::LayoutLeft>("invMass", Nftot);
177e8d2b73aSMark Adams     SData_d->invMass                                                                                                        = static_cast<void *>(invMass);
178*ae6bf4a8Smarkadams4     const Kokkos::View<PetscReal *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_lambdas(a_lambdas, LANDAU_MAX_GRIDS * LANDAU_MAX_GRIDS);
179*ae6bf4a8Smarkadams4     auto                                                                                                            lambdas = new Kokkos::View<PetscReal *, Kokkos::LayoutLeft>("lambdas", LANDAU_MAX_GRIDS * LANDAU_MAX_GRIDS);
180*ae6bf4a8Smarkadams4     SData_d->lambdas                                                                                                        = static_cast<void *>(lambdas);
181e8d2b73aSMark Adams     const Kokkos::View<PetscReal *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_BB(BB, Nq * Nb);
182e8d2b73aSMark Adams     auto                                                                                                            B = new Kokkos::View<PetscReal *, Kokkos::LayoutLeft>("B", Nq * Nb);
183e8d2b73aSMark Adams     SData_d->B                                                                                                        = static_cast<void *>(B);
184e8d2b73aSMark Adams     const Kokkos::View<PetscReal *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_DD(DD, Nq * Nb * dim);
185e8d2b73aSMark Adams     auto                                                                                                            D = new Kokkos::View<PetscReal *, Kokkos::LayoutLeft>("D", Nq * Nb * dim);
186e8d2b73aSMark Adams     SData_d->D                                                                                                        = static_cast<void *>(D);
187e8d2b73aSMark Adams     const Kokkos::View<PetscReal *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_invJ(a_invJ, nip * dim * dim);
188e8d2b73aSMark Adams     auto                                                                                                            invJ = new Kokkos::View<PetscReal *, Kokkos::LayoutLeft>("invJ", nip * dim * dim);
189e8d2b73aSMark Adams     SData_d->invJ                                                                                                        = static_cast<void *>(invJ);
190e8d2b73aSMark Adams     const Kokkos::View<PetscReal *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_x(a_x, nip);
191e8d2b73aSMark Adams     auto                                                                                                            x = new Kokkos::View<PetscReal *, Kokkos::LayoutLeft>("x", nip);
192e8d2b73aSMark Adams     SData_d->x                                                                                                        = static_cast<void *>(x);
193e8d2b73aSMark Adams     const Kokkos::View<PetscReal *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_y(a_y, nip);
194e8d2b73aSMark Adams     auto                                                                                                            y = new Kokkos::View<PetscReal *, Kokkos::LayoutLeft>("y", nip);
195e8d2b73aSMark Adams     SData_d->y                                                                                                        = static_cast<void *>(y);
196e8d2b73aSMark Adams     const Kokkos::View<PetscReal *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_w(a_w, nip);
197e8d2b73aSMark Adams     auto                                                                                                            w = new Kokkos::View<PetscReal *, Kokkos::LayoutLeft>("w", nip);
198e8d2b73aSMark Adams     SData_d->w                                                                                                        = static_cast<void *>(w);
199e8d2b73aSMark Adams 
200e8d2b73aSMark Adams     Kokkos::deep_copy(*alpha, h_alpha);
201e8d2b73aSMark Adams     Kokkos::deep_copy(*beta, h_beta);
202e8d2b73aSMark Adams     Kokkos::deep_copy(*invMass, h_invMass);
203*ae6bf4a8Smarkadams4     Kokkos::deep_copy(*lambdas, h_lambdas);
204e8d2b73aSMark Adams     Kokkos::deep_copy(*B, h_BB);
205e8d2b73aSMark Adams     Kokkos::deep_copy(*D, h_DD);
206e8d2b73aSMark Adams     Kokkos::deep_copy(*invJ, h_invJ);
207e8d2b73aSMark Adams     Kokkos::deep_copy(*x, h_x);
208e8d2b73aSMark Adams     Kokkos::deep_copy(*y, h_y);
209e8d2b73aSMark Adams     Kokkos::deep_copy(*w, h_w);
210e8d2b73aSMark Adams 
2118a6f2e61SMark Adams     if (dim == 3) {
212984ed092SMark Adams       const Kokkos::View<PetscReal *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_z(a_z, nip);
2138a6f2e61SMark Adams       auto                                                                                                            z = new Kokkos::View<PetscReal *, Kokkos::LayoutLeft>("z", nip);
2148a6f2e61SMark Adams       SData_d->z                                                                                                        = static_cast<void *>(z);
2158a6f2e61SMark Adams       Kokkos::deep_copy(*z, h_z);
2168a6f2e61SMark Adams     } else SData_d->z = NULL;
2178a6f2e61SMark Adams 
2188a6f2e61SMark Adams     //
2198a6f2e61SMark Adams     const Kokkos::View<PetscInt *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_NCells(a_numCells, num_grids);
2208a6f2e61SMark Adams     auto                                                                                                           nc = new Kokkos::View<PetscInt *, Kokkos::LayoutLeft>("NCells", num_grids);
2218a6f2e61SMark Adams     SData_d->NCells                                                                                                   = static_cast<void *>(nc);
2228a6f2e61SMark Adams     Kokkos::deep_copy(*nc, h_NCells);
2238a6f2e61SMark Adams 
2248a6f2e61SMark Adams     const Kokkos::View<PetscInt *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_species_offset(a_species_offset, num_grids + 1);
2258a6f2e61SMark Adams     auto                                                                                                           soff = new Kokkos::View<PetscInt *, Kokkos::LayoutLeft>("species_offset", num_grids + 1);
2268a6f2e61SMark Adams     SData_d->species_offset                                                                                             = static_cast<void *>(soff);
2278a6f2e61SMark Adams     Kokkos::deep_copy(*soff, h_species_offset);
2288a6f2e61SMark Adams 
2298a6f2e61SMark Adams     const Kokkos::View<PetscInt *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_mat_offset(a_mat_offset, num_grids + 1);
2308a6f2e61SMark Adams     auto                                                                                                           moff = new Kokkos::View<PetscInt *, Kokkos::LayoutLeft>("mat_offset", num_grids + 1);
2318a6f2e61SMark Adams     SData_d->mat_offset                                                                                                 = static_cast<void *>(moff);
2328a6f2e61SMark Adams     Kokkos::deep_copy(*moff, h_mat_offset);
2338a6f2e61SMark Adams 
2348a6f2e61SMark Adams     const Kokkos::View<PetscInt *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_ip_offset(ip_offset, num_grids + 1);
2358a6f2e61SMark Adams     auto                                                                                                           ipoff = new Kokkos::View<PetscInt *, Kokkos::LayoutLeft>("ip_offset", num_grids + 1);
2368a6f2e61SMark Adams     SData_d->ip_offset                                                                                                   = static_cast<void *>(ipoff);
2378a6f2e61SMark Adams     Kokkos::deep_copy(*ipoff, h_ip_offset);
2388a6f2e61SMark Adams 
2398a6f2e61SMark Adams     const Kokkos::View<PetscInt *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_elem_offset(elem_offset, num_grids + 1);
2408a6f2e61SMark Adams     auto                                                                                                           eoff = new Kokkos::View<PetscInt *, Kokkos::LayoutLeft>("elem_offset", num_grids + 1);
2418a6f2e61SMark Adams     SData_d->elem_offset                                                                                                = static_cast<void *>(eoff);
2428a6f2e61SMark Adams     Kokkos::deep_copy(*eoff, h_elem_offset);
2438a6f2e61SMark Adams 
2448a6f2e61SMark Adams     const Kokkos::View<PetscInt *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_ipf_offset(ipf_offset, num_grids + 1);
2458a6f2e61SMark Adams     auto                                                                                                           ipfoff = new Kokkos::View<PetscInt *, Kokkos::LayoutLeft>("ipf_offset", num_grids + 1);
2468a6f2e61SMark Adams     SData_d->ipf_offset                                                                                                   = static_cast<void *>(ipfoff);
2478a6f2e61SMark Adams     Kokkos::deep_copy(*ipfoff, h_ipf_offset);
2488a6f2e61SMark Adams   #if defined(LANDAU_LAYOUT_LEFT) // preallocate dynamic data, no copy
2498fdabdddSMark Adams     auto ipfdf_data     = new Kokkos::View<PetscReal ***, Kokkos::LayoutLeft>("fdf", batch_sz, dim + 1, IPf_sz);
2508a6f2e61SMark Adams   #else
2518fdabdddSMark Adams     auto ipfdf_data = new Kokkos::View<PetscReal ***, Kokkos::LayoutRight>("fdf", batch_sz, dim + 1, IPf_sz);
2528a6f2e61SMark Adams   #endif
2538a6f2e61SMark Adams     SData_d->ipfdf_data = static_cast<void *>(ipfdf_data);
2548fdabdddSMark Adams     auto Eq_m           = new Kokkos::View<PetscReal *, Kokkos::LayoutLeft>("Eq_m", Nftot); // allocate but do not set, same for whole batch
255e8d2b73aSMark Adams     SData_d->Eq_m       = static_cast<void *>(Eq_m);
256cada7fc7SMark Adams     const Kokkos::View<LandauIdx *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_coo_elem_offsets((LandauIdx *)SData_d->coo_elem_offsets, SData_d->coo_n_cellsTot + 1);
257cada7fc7SMark Adams     auto                                                                                                            coo_elem_offsets = new Kokkos::View<LandauIdx *, Kokkos::LayoutLeft>("coo_elem_offsets", SData_d->coo_n_cellsTot + 1);
258cada7fc7SMark Adams     const Kokkos::View<LandauIdx *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_coo_elem_fullNb((LandauIdx *)SData_d->coo_elem_fullNb, SData_d->coo_n_cellsTot);
259cada7fc7SMark Adams     auto                                                                                                            coo_elem_fullNb = new Kokkos::View<LandauIdx *, Kokkos::LayoutLeft>("coo_elem_offsets", SData_d->coo_n_cellsTot);
260cada7fc7SMark Adams     const Kokkos::View<LandauIdx *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_coo_elem_point_offsets((LandauIdx *)SData_d->coo_elem_point_offsets, SData_d->coo_n_cellsTot * (LANDAU_MAX_NQ + 1));
261cada7fc7SMark Adams     auto coo_elem_point_offsets = new Kokkos::View<LandauIdx *, Kokkos::LayoutLeft>("coo_elem_point_offsets", SData_d->coo_n_cellsTot * (LANDAU_MAX_NQ + 1));
262bfc784b7SMark Adams     // assign & copy
263bfc784b7SMark Adams     Kokkos::deep_copy(*coo_elem_offsets, h_coo_elem_offsets);
264bfc784b7SMark Adams     Kokkos::deep_copy(*coo_elem_fullNb, h_coo_elem_fullNb);
265bfc784b7SMark Adams     Kokkos::deep_copy(*coo_elem_point_offsets, h_coo_elem_point_offsets);
266bfc784b7SMark Adams     // need to free this now and use pointer space
2679566063dSJacob Faibussowitsch     PetscCall(PetscFree3(SData_d->coo_elem_offsets, SData_d->coo_elem_fullNb, SData_d->coo_elem_point_offsets));
268cada7fc7SMark Adams     SData_d->coo_elem_offsets       = static_cast<void *>(coo_elem_offsets);
269cada7fc7SMark Adams     SData_d->coo_elem_fullNb        = static_cast<void *>(coo_elem_fullNb);
270cada7fc7SMark Adams     SData_d->coo_elem_point_offsets = static_cast<void *>(coo_elem_point_offsets);
271a31f6053SMark Adams     auto coo_vals                   = new Kokkos::View<PetscScalar *, Kokkos::LayoutRight, Kokkos::DefaultExecutionSpace>("coo_vals", SData_d->coo_size);
272a31f6053SMark Adams     SData_d->coo_vals               = static_cast<void *>(coo_vals);
273e8d2b73aSMark Adams   }
2748a6f2e61SMark Adams   SData_d->maps = NULL; // not used
2753ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
276e8d2b73aSMark Adams }
277e8d2b73aSMark Adams 
278d71ae5a4SJacob Faibussowitsch PetscErrorCode LandauKokkosStaticDataClear(LandauStaticData *SData_d)
279d71ae5a4SJacob Faibussowitsch {
280e8d2b73aSMark Adams   PetscFunctionBegin;
281e8d2b73aSMark Adams   if (SData_d->alpha) {
282e8d2b73aSMark Adams     auto alpha = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->alpha);
283e8d2b73aSMark Adams     delete alpha;
2848a6f2e61SMark Adams     SData_d->alpha = NULL;
285e8d2b73aSMark Adams     auto beta      = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->beta);
286e8d2b73aSMark Adams     delete beta;
287e8d2b73aSMark Adams     auto invMass = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->invMass);
288e8d2b73aSMark Adams     delete invMass;
289*ae6bf4a8Smarkadams4     auto lambdas = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->lambdas);
290*ae6bf4a8Smarkadams4     delete lambdas;
291e8d2b73aSMark Adams     auto B = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->B);
292e8d2b73aSMark Adams     delete B;
293e8d2b73aSMark Adams     auto D = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->D);
294e8d2b73aSMark Adams     delete D;
295e8d2b73aSMark Adams     auto invJ = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->invJ);
296e8d2b73aSMark Adams     delete invJ;
297e8d2b73aSMark Adams     auto x = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->x);
298e8d2b73aSMark Adams     delete x;
299e8d2b73aSMark Adams     auto y = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->y);
300e8d2b73aSMark Adams     delete y;
3018a6f2e61SMark Adams     if (SData_d->z) {
302e8d2b73aSMark Adams       auto z = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->z);
303e8d2b73aSMark Adams       delete z;
3048a6f2e61SMark Adams     }
3058a6f2e61SMark Adams   #if defined(LANDAU_LAYOUT_LEFT) // preallocate dynamic data, no copy
3068fdabdddSMark Adams     auto z = static_cast<Kokkos::View<PetscReal ***, Kokkos::LayoutLeft> *>(SData_d->ipfdf_data);
3078a6f2e61SMark Adams   #else
3088fdabdddSMark Adams     auto z          = static_cast<Kokkos::View<PetscReal ***, Kokkos::LayoutRight> *>(SData_d->ipfdf_data);
3098a6f2e61SMark Adams   #endif
3108a6f2e61SMark Adams     delete z;
311e8d2b73aSMark Adams     auto w = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->w);
312e8d2b73aSMark Adams     delete w;
313e8d2b73aSMark Adams     auto Eq_m = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->Eq_m);
314e8d2b73aSMark Adams     delete Eq_m;
3158a6f2e61SMark Adams     // offset
3168a6f2e61SMark Adams     auto nc = static_cast<Kokkos::View<PetscInt *, Kokkos::LayoutLeft> *>(SData_d->NCells);
3178a6f2e61SMark Adams     delete nc;
3188a6f2e61SMark Adams     auto soff = static_cast<Kokkos::View<PetscInt *, Kokkos::LayoutLeft> *>(SData_d->species_offset);
3198a6f2e61SMark Adams     delete soff;
3208a6f2e61SMark Adams     auto moff = static_cast<Kokkos::View<PetscInt *, Kokkos::LayoutLeft> *>(SData_d->mat_offset);
3218a6f2e61SMark Adams     delete moff;
3228a6f2e61SMark Adams     auto ipoff = static_cast<Kokkos::View<PetscInt *, Kokkos::LayoutLeft> *>(SData_d->ip_offset);
3238a6f2e61SMark Adams     delete ipoff;
3248a6f2e61SMark Adams     auto eoff = static_cast<Kokkos::View<PetscInt *, Kokkos::LayoutLeft> *>(SData_d->elem_offset);
3258a6f2e61SMark Adams     delete eoff;
3268a6f2e61SMark Adams     auto ipfoff = static_cast<Kokkos::View<PetscInt *, Kokkos::LayoutLeft> *>(SData_d->ipf_offset);
3278a6f2e61SMark Adams     delete ipfoff;
328bfc784b7SMark Adams     auto coo_elem_offsets = static_cast<Kokkos::View<LandauIdx *, Kokkos::LayoutLeft> *>((void *)SData_d->coo_elem_offsets);
329bfc784b7SMark Adams     delete coo_elem_offsets;
330bfc784b7SMark Adams     auto coo_elem_fullNb = static_cast<Kokkos::View<LandauIdx *, Kokkos::LayoutLeft> *>((void *)SData_d->coo_elem_fullNb);
331bfc784b7SMark Adams     delete coo_elem_fullNb;
332cada7fc7SMark Adams     auto coo_elem_point_offsets = static_cast<Kokkos::View<LandauIdx *, Kokkos::LayoutLeft> *>((void *)SData_d->coo_elem_point_offsets);
333bfc784b7SMark Adams     delete coo_elem_point_offsets;
334bfc784b7SMark Adams     SData_d->coo_elem_offsets       = NULL;
335bfc784b7SMark Adams     SData_d->coo_elem_point_offsets = NULL;
336bfc784b7SMark Adams     SData_d->coo_elem_fullNb        = NULL;
337a31f6053SMark Adams     auto coo_vals                   = static_cast<Kokkos::View<PetscScalar *, Kokkos::LayoutRight, Kokkos::DefaultExecutionSpace> *>((void *)SData_d->coo_vals);
338a31f6053SMark Adams     delete coo_vals;
339af0767daSMark Adams   }
3403ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
341e8d2b73aSMark Adams }
342e8d2b73aSMark Adams 
34359118022SMark Adams   #define KOKKOS_SHARED_LEVEL 0   // 0 is shared, 1 is global
34459118022SMark Adams 
3458a6f2e61SMark Adams KOKKOS_INLINE_FUNCTION
346d71ae5a4SJacob Faibussowitsch PetscErrorCode landau_mat_assemble(PetscSplitCSRDataStructure d_mat, PetscScalar *coo_vals, const PetscScalar Aij, const PetscInt f, const PetscInt g, const PetscInt Nb, PetscInt moffset, const PetscInt elem, const PetscInt fieldA, const P4estVertexMaps *d_maps, const LandauIdx coo_elem_offsets[], const LandauIdx coo_elem_fullNb[], const LandauIdx (*coo_elem_point_offsets)[LANDAU_MAX_NQ + 1], const PetscInt glb_elem_idx, const PetscInt bid_coo_sz_batch)
347d71ae5a4SJacob Faibussowitsch {
348ad4b5651SMark Adams   PetscInt               idx, q, nr, nc, d;
3498a6f2e61SMark Adams   const LandauIdx *const Idxs                         = &d_maps->gIdx[elem][fieldA][0];
350bfc784b7SMark Adams   PetscScalar            row_scale[LANDAU_MAX_Q_FACE] = {0}, col_scale[LANDAU_MAX_Q_FACE] = {0};
351bfc784b7SMark Adams   if (coo_vals) { // mirror (i,j) in CreateStaticGPUData
352bfc784b7SMark Adams     const int fullNb = coo_elem_fullNb[glb_elem_idx], fullNb2 = fullNb * fullNb;
353bfc784b7SMark Adams     idx = Idxs[f];
354bfc784b7SMark Adams     if (idx >= 0) {
355bfc784b7SMark Adams       nr           = 1;
356bfc784b7SMark Adams       row_scale[0] = 1.;
357bfc784b7SMark Adams     } else {
358bfc784b7SMark Adams       idx = -idx - 1;
359bfc784b7SMark Adams       for (q = 0, nr = 0; q < d_maps->num_face; q++, nr++) {
360bfc784b7SMark Adams         if (d_maps->c_maps[idx][q].gid < 0) break;
361bfc784b7SMark Adams         row_scale[q] = d_maps->c_maps[idx][q].scale;
362bfc784b7SMark Adams       }
363bfc784b7SMark Adams     }
364bfc784b7SMark Adams     idx = Idxs[g];
365bfc784b7SMark Adams     if (idx >= 0) {
366bfc784b7SMark Adams       nc           = 1;
367bfc784b7SMark Adams       col_scale[0] = 1.;
368bfc784b7SMark Adams     } else {
369bfc784b7SMark Adams       idx = -idx - 1;
370bfc784b7SMark Adams       nc  = d_maps->num_face;
371bfc784b7SMark Adams       for (q = 0, nc = 0; q < d_maps->num_face; q++, nc++) {
372bfc784b7SMark Adams         if (d_maps->c_maps[idx][q].gid < 0) break;
373bfc784b7SMark Adams         col_scale[q] = d_maps->c_maps[idx][q].scale;
374bfc784b7SMark Adams       }
375bfc784b7SMark Adams     }
376cada7fc7SMark Adams     const int idx0 = bid_coo_sz_batch + coo_elem_offsets[glb_elem_idx] + fieldA * fullNb2 + fullNb * coo_elem_point_offsets[glb_elem_idx][f] + nr * coo_elem_point_offsets[glb_elem_idx][g];
377bfc784b7SMark Adams     for (int q = 0, idx2 = idx0; q < nr; q++) {
378ad540459SPierre Jolivet       for (int d = 0; d < nc; d++, idx2++) coo_vals[idx2] = row_scale[q] * col_scale[d] * Aij;
379bfc784b7SMark Adams     }
380bfc784b7SMark Adams   } else {
381bfc784b7SMark Adams     PetscScalar vals[LANDAU_MAX_Q_FACE * LANDAU_MAX_Q_FACE] = {0};
382ad4b5651SMark Adams     PetscInt    rows[LANDAU_MAX_Q_FACE], cols[LANDAU_MAX_Q_FACE];
383ad4b5651SMark Adams     idx = Idxs[f];
3848a6f2e61SMark Adams     if (idx >= 0) {
3858a6f2e61SMark Adams       nr           = 1;
386ad4b5651SMark Adams       rows[0]      = idx;
387ad4b5651SMark Adams       row_scale[0] = 1.;
3888a6f2e61SMark Adams     } else {
389ad4b5651SMark Adams       idx = -idx - 1;
390ad4b5651SMark Adams       for (q = 0, nr = 0; q < d_maps->num_face; q++, nr++) {
391ad4b5651SMark Adams         if (d_maps->c_maps[idx][q].gid < 0) break;
392ad4b5651SMark Adams         rows[q]      = d_maps->c_maps[idx][q].gid;
393ad4b5651SMark Adams         row_scale[q] = d_maps->c_maps[idx][q].scale;
3948a6f2e61SMark Adams       }
395ad4b5651SMark Adams     }
396ad4b5651SMark Adams     idx = Idxs[g];
3978a6f2e61SMark Adams     if (idx >= 0) {
3988a6f2e61SMark Adams       nc           = 1;
399ad4b5651SMark Adams       cols[0]      = idx;
400ad4b5651SMark Adams       col_scale[0] = 1.;
4018a6f2e61SMark Adams     } else {
402ad4b5651SMark Adams       idx = -idx - 1;
403ad4b5651SMark Adams       for (q = 0, nc = 0; q < d_maps->num_face; q++, nc++) {
404ad4b5651SMark Adams         if (d_maps->c_maps[idx][q].gid < 0) break;
405ad4b5651SMark Adams         cols[q]      = d_maps->c_maps[idx][q].gid;
406ad4b5651SMark Adams         col_scale[q] = d_maps->c_maps[idx][q].scale;
4078a6f2e61SMark Adams       }
408ad4b5651SMark Adams     }
409bfc784b7SMark Adams 
410ad4b5651SMark Adams     for (q = 0; q < nr; q++) rows[q] = rows[q] + moffset;
411ad4b5651SMark Adams     for (q = 0; q < nc; q++) cols[q] = cols[q] + moffset;
4128a6f2e61SMark Adams     for (q = 0; q < nr; q++) {
413ad540459SPierre Jolivet       for (d = 0; d < nc; d++) vals[q * nc + d] = row_scale[q] * col_scale[d] * Aij;
4148a6f2e61SMark Adams     }
4153ba16761SJacob Faibussowitsch     static_cast<void>(MatSetValuesDevice(d_mat, nr, rows, nc, cols, vals, ADD_VALUES));
416bfc784b7SMark Adams   }
4173ba16761SJacob Faibussowitsch   return PETSC_SUCCESS;
4188a6f2e61SMark Adams }
4198a6f2e61SMark Adams 
420d71ae5a4SJacob Faibussowitsch PetscErrorCode LandauKokkosJacobian(DM plex[], const PetscInt Nq, const PetscInt batch_sz, const PetscInt num_grids, const PetscInt a_numCells[], PetscReal a_Eq_m[], PetscScalar a_elem_closure[], const PetscScalar a_xarray[], const LandauStaticData *SData_d, const PetscReal shift, const PetscLogEvent events[], const PetscInt a_mat_offset[], const PetscInt a_species_offset[], Mat subJ[], Mat JacP)
421d71ae5a4SJacob Faibussowitsch {
422e8d2b73aSMark Adams   using scr_mem_t                   = Kokkos::DefaultExecutionSpace::scratch_memory_space;
42319be780dSMark Adams   using real2_scr_t                 = Kokkos::View<PetscScalar **, Kokkos::LayoutRight, scr_mem_t>;
424e8d2b73aSMark Adams   using g2_scr_t                    = Kokkos::View<PetscReal ***, Kokkos::LayoutRight, scr_mem_t>;
425e8d2b73aSMark Adams   using g3_scr_t                    = Kokkos::View<PetscReal ****, Kokkos::LayoutRight, scr_mem_t>;
4268fdabdddSMark Adams   PetscInt                   Nb     = Nq, dim, num_cells_max, Nf_max, num_cells_batch;
427dbabbaf5SMark Adams   int                        nfaces = 0, vector_size = 512 / Nq;
428e8d2b73aSMark Adams   LandauCtx                 *ctx;
429e8d2b73aSMark Adams   PetscReal                 *d_Eq_m     = NULL;
4308a6f2e61SMark Adams   PetscScalar               *d_vertex_f = NULL;
4318a6f2e61SMark Adams   P4estVertexMaps           *maps[LANDAU_MAX_GRIDS]; // this gets captured
4328a6f2e61SMark Adams   PetscSplitCSRDataStructure d_mat;
4338fdabdddSMark Adams   PetscContainer             container;
434bd08a171SMark Adams   const int                  conc = Kokkos::DefaultExecutionSpace().concurrency(), openmp = !!(conc < 1000), team_size = (openmp == 0) ? Nq : 1;
435bfc784b7SMark Adams   const PetscInt             coo_sz_batch = SData_d->coo_size / batch_sz;                                                 // capture
436e8d2b73aSMark Adams   auto                       d_alpha_k    = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->alpha); //static data
437e8d2b73aSMark Adams   const PetscReal           *d_alpha      = d_alpha_k->data();
4388a6f2e61SMark Adams   const PetscInt             Nftot        = d_alpha_k->size(); // total number of species
439e8d2b73aSMark Adams   auto                       d_beta_k     = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->beta);
440e8d2b73aSMark Adams   const PetscReal           *d_beta       = d_beta_k->data();
441e8d2b73aSMark Adams   auto                       d_invMass_k  = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->invMass);
442e8d2b73aSMark Adams   const PetscReal           *d_invMass    = d_invMass_k->data();
443*ae6bf4a8Smarkadams4   auto                       d_lambdas_k  = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->lambdas);
444*ae6bf4a8Smarkadams4   const PetscReal           *d_lambdas    = d_lambdas_k->data();
445e8d2b73aSMark Adams   auto                       d_B_k        = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->B);
446e8d2b73aSMark Adams   const PetscReal           *d_BB         = d_B_k->data();
447e8d2b73aSMark Adams   auto                       d_D_k        = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->D);
448e8d2b73aSMark Adams   const PetscReal           *d_DD         = d_D_k->data();
449e8d2b73aSMark Adams   auto                       d_invJ_k     = *static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->invJ); // use Kokkos vector in kernels
450e8d2b73aSMark Adams   auto                       d_x_k        = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->x);     //static data
451e8d2b73aSMark Adams   const PetscReal           *d_x          = d_x_k->data();
452e8d2b73aSMark Adams   auto                       d_y_k        = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->y); //static data
453e8d2b73aSMark Adams   const PetscReal           *d_y          = d_y_k->data();
454e8d2b73aSMark Adams   auto                       d_z_k        = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->z); //static data
4558a6f2e61SMark Adams   const PetscReal           *d_z          = (LANDAU_DIM == 3) ? d_z_k->data() : NULL;
4568a6f2e61SMark Adams   auto                       d_w_k        = *static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->w); //static data
4578a6f2e61SMark Adams   const PetscReal           *d_w          = d_w_k.data();
4588fdabdddSMark Adams   // grid offsets - single vertex grid data
4598a6f2e61SMark Adams   auto                                            d_numCells_k       = static_cast<Kokkos::View<PetscInt *, Kokkos::LayoutLeft> *>(SData_d->NCells);
4608a6f2e61SMark Adams   const PetscInt                                 *d_numCells         = d_numCells_k->data();
4618a6f2e61SMark Adams   auto                                            d_species_offset_k = static_cast<Kokkos::View<PetscInt *, Kokkos::LayoutLeft> *>(SData_d->species_offset);
4628a6f2e61SMark Adams   const PetscInt                                 *d_species_offset   = d_species_offset_k->data();
4638a6f2e61SMark Adams   auto                                            d_mat_offset_k     = static_cast<Kokkos::View<PetscInt *, Kokkos::LayoutLeft> *>(SData_d->mat_offset);
4648a6f2e61SMark Adams   const PetscInt                                 *d_mat_offset       = d_mat_offset_k->data();
4658a6f2e61SMark Adams   auto                                            d_ip_offset_k      = static_cast<Kokkos::View<PetscInt *, Kokkos::LayoutLeft> *>(SData_d->ip_offset);
4668a6f2e61SMark Adams   const PetscInt                                 *d_ip_offset        = d_ip_offset_k->data();
4678a6f2e61SMark Adams   auto                                            d_ipf_offset_k     = static_cast<Kokkos::View<PetscInt *, Kokkos::LayoutLeft> *>(SData_d->ipf_offset);
4688a6f2e61SMark Adams   const PetscInt                                 *d_ipf_offset       = d_ipf_offset_k->data();
4698a6f2e61SMark Adams   auto                                            d_elem_offset_k    = static_cast<Kokkos::View<PetscInt *, Kokkos::LayoutLeft> *>(SData_d->elem_offset);
4708a6f2e61SMark Adams   const PetscInt                                 *d_elem_offset      = d_elem_offset_k->data();
4718fdabdddSMark Adams   #if defined(LANDAU_LAYOUT_LEFT) // preallocate dynamic data, including batched vertices
4728fdabdddSMark Adams   Kokkos::View<PetscReal ***, Kokkos::LayoutLeft> d_fdf_k            = *static_cast<Kokkos::View<PetscReal ***, Kokkos::LayoutLeft> *>(SData_d->ipfdf_data);
4738a6f2e61SMark Adams   #else
4748fdabdddSMark Adams   Kokkos::View<PetscReal ***, Kokkos::LayoutRight> d_fdf_k = *static_cast<Kokkos::View<PetscReal ***, Kokkos::LayoutRight> *>(SData_d->ipfdf_data);
4758a6f2e61SMark Adams   #endif
4768fdabdddSMark Adams   auto                                            d_Eq_m_k           = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->Eq_m); // static storage, dynamci data - E(t), copy later, single vertex
477bfc784b7SMark Adams   // COO
478cada7fc7SMark Adams   auto       d_coo_elem_offsets_k                         = static_cast<Kokkos::View<LandauIdx *, Kokkos::LayoutLeft> *>(SData_d->coo_elem_offsets);
479cada7fc7SMark Adams   LandauIdx *d_coo_elem_offsets                           = (SData_d->coo_size == 0) ? NULL : d_coo_elem_offsets_k->data();
480cada7fc7SMark Adams   auto       d_coo_elem_fullNb_k                          = static_cast<Kokkos::View<LandauIdx *, Kokkos::LayoutLeft> *>(SData_d->coo_elem_fullNb);
481cada7fc7SMark Adams   LandauIdx *d_coo_elem_fullNb                            = (SData_d->coo_size == 0) ? NULL : d_coo_elem_fullNb_k->data();
482cada7fc7SMark Adams   auto       d_coo_elem_point_offsets_k                   = static_cast<Kokkos::View<LandauIdx *, Kokkos::LayoutLeft> *>(SData_d->coo_elem_point_offsets);
483cada7fc7SMark Adams   LandauIdx(*d_coo_elem_point_offsets)[LANDAU_MAX_NQ + 1] = (SData_d->coo_size == 0) ? NULL : (LandauIdx(*)[LANDAU_MAX_NQ + 1]) d_coo_elem_point_offsets_k->data();
484a31f6053SMark Adams   auto         d_coo_vals_k                               = static_cast<Kokkos::View<PetscScalar *, Kokkos::LayoutRight> *>(SData_d->coo_vals);
485a31f6053SMark Adams   PetscScalar *d_coo_vals                                 = (SData_d->coo_size == 0) ? NULL : d_coo_vals_k->data();
4868fdabdddSMark Adams 
487e8d2b73aSMark Adams   PetscFunctionBegin;
488a31f6053SMark Adams   while (vector_size & (vector_size - 1)) vector_size = vector_size & (vector_size - 1);
489dbabbaf5SMark Adams   if (vector_size > 16) vector_size = 16; // printf("DEBUG\n");
4909566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(events[3], 0, 0, 0, 0));
4919566063dSJacob Faibussowitsch   PetscCall(DMGetApplicationContext(plex[0], &ctx));
49228b400f6SJacob Faibussowitsch   PetscCheck(ctx, PETSC_COMM_SELF, PETSC_ERR_PLIB, "no context");
4939566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(plex[0], &dim));
49463a3b9bcSJacob Faibussowitsch   PetscCheck(LANDAU_DIM == dim, PETSC_COMM_WORLD, PETSC_ERR_PLIB, "dim %" PetscInt_FMT " != LANDAU_DIM %d", dim, LANDAU_DIM);
495a587d139SMark   if (ctx->gpu_assembly) {
4969566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)JacP, "assembly_maps", (PetscObject *)&container));
497bfc784b7SMark Adams     if (container) {
498a587d139SMark       P4estVertexMaps *h_maps = NULL;
4999566063dSJacob Faibussowitsch       PetscCall(PetscContainerGetPointer(container, (void **)&h_maps));
5008a6f2e61SMark Adams       for (PetscInt grid = 0; grid < num_grids; grid++) {
5018a6f2e61SMark Adams         if (h_maps[grid].d_self) {
5028a6f2e61SMark Adams           maps[grid] = h_maps[grid].d_self;
5038a6f2e61SMark Adams           nfaces     = h_maps[grid].num_face; // nface=0 for CPU assembly
504a587d139SMark         } else {
505a587d139SMark           SETERRQ(PETSC_COMM_SELF, PETSC_ERR_PLIB, "GPU assembly but no metadata in container");
506a587d139SMark         }
5078a6f2e61SMark Adams       }
508bfc784b7SMark Adams       if (!d_coo_vals) {
509a587d139SMark         // this does the setup the first time called
5109566063dSJacob Faibussowitsch         PetscCall(MatKokkosGetDeviceMatWrite(JacP, &d_mat));
511bfc784b7SMark Adams       } else {
5128fdabdddSMark Adams         d_mat = NULL;
513a587d139SMark       }
514bfc784b7SMark Adams     } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_PLIB, "GPU assembly but no metadata in container");
515a587d139SMark   } else {
5168a6f2e61SMark Adams     for (PetscInt grid = 0; grid < num_grids; grid++) maps[grid] = NULL;
5178a6f2e61SMark Adams     nfaces    = 0;
5188fdabdddSMark Adams     d_mat     = NULL;
5198fdabdddSMark Adams     container = NULL;
520a587d139SMark   }
5218fdabdddSMark Adams   num_cells_batch = Nf_max = num_cells_max = 0;
5228a6f2e61SMark Adams   for (PetscInt grid = 0; grid < num_grids; grid++) {
5238a6f2e61SMark Adams     int Nfloc = a_species_offset[grid + 1] - a_species_offset[grid];
5248a6f2e61SMark Adams     if (Nfloc > Nf_max) Nf_max = Nfloc;
5258a6f2e61SMark Adams     if (a_numCells[grid] > num_cells_max) num_cells_max = a_numCells[grid];
5268fdabdddSMark Adams     num_cells_batch += a_numCells[grid]; // we don't have a host element offset here (but in ctx)
5278a6f2e61SMark Adams   }
528d9008a5dSMark Adams   const int                                                                                                       elem_mat_num_cells_max_grid = container ? 0 : num_cells_max;
529bfbbad94Smarkadams4   #ifdef LAND_SUPPORT_CPU_ASS
530bfbbad94Smarkadams4   const int                                                                                                       totDim_max = Nf_max * Nq, elem_mat_size_max = totDim_max * totDim_max;
531a31f6053SMark Adams   Kokkos::View<PetscScalar ****, Kokkos::LayoutRight>                                                             d_elem_mats("element matrices", batch_sz, num_grids, elem_mat_num_cells_max_grid, elem_mat_size_max); // not used (cpu assembly)
532bfbbad94Smarkadams4   #endif
5338a6f2e61SMark Adams   const Kokkos::View<PetscReal *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_Eq_m_k(a_Eq_m, Nftot);
5348a6f2e61SMark Adams   if (a_elem_closure || a_xarray) {
535e8d2b73aSMark Adams     Kokkos::deep_copy(*d_Eq_m_k, h_Eq_m_k);
536e8d2b73aSMark Adams     d_Eq_m = d_Eq_m_k->data();
5378a6f2e61SMark Adams   } else d_Eq_m = NULL;
5389566063dSJacob Faibussowitsch   PetscCall(PetscKokkosInitializeCheck());
5399566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(events[3], 0, 0, 0, 0));
5408a6f2e61SMark Adams   if (a_elem_closure || a_xarray) { // Jacobian, create f & df
5418a6f2e61SMark Adams     Kokkos::View<PetscScalar *, Kokkos::LayoutLeft> *d_vertex_f_k = NULL;
5429566063dSJacob Faibussowitsch     PetscCall(PetscLogEventBegin(events[1], 0, 0, 0, 0));
5438a6f2e61SMark Adams     if (a_elem_closure) {
5448a6f2e61SMark Adams       PetscInt closure_sz = 0; // argh, don't have this on the host!!!
5458a6f2e61SMark Adams       for (PetscInt grid = 0; grid < num_grids; grid++) {
5468a6f2e61SMark Adams         PetscInt nfloc = a_species_offset[grid + 1] - a_species_offset[grid];
5478a6f2e61SMark Adams         closure_sz += Nq * nfloc * a_numCells[grid];
5488a6f2e61SMark Adams       }
5498fdabdddSMark Adams       closure_sz *= batch_sz;
5508a6f2e61SMark Adams       d_vertex_f_k = new Kokkos::View<PetscScalar *, Kokkos::LayoutLeft>("closure", closure_sz);
5518a6f2e61SMark Adams       const Kokkos::View<PetscScalar *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_closure_k(a_elem_closure, closure_sz); // Vertex data for each element
5528a6f2e61SMark Adams       Kokkos::deep_copy(*d_vertex_f_k, h_closure_k);
5538a6f2e61SMark Adams       d_vertex_f = d_vertex_f_k->data();
554af0767daSMark Adams     } else {
5558a6f2e61SMark Adams       d_vertex_f = (PetscScalar *)a_xarray;
556af0767daSMark Adams     }
5579566063dSJacob Faibussowitsch     PetscCall(PetscLogEventEnd(events[1], 0, 0, 0, 0));
5589566063dSJacob Faibussowitsch     PetscCall(PetscLogEventBegin(events[8], 0, 0, 0, 0));
5599566063dSJacob Faibussowitsch     PetscCall(PetscLogGpuTimeBegin());
56019be780dSMark Adams 
56119be780dSMark Adams     const int scr_bytes_fdf = real2_scr_t::shmem_size(Nf_max, Nb);
562dbabbaf5SMark Adams     PetscCall(PetscInfo(plex[0], "df & f shared memory size: %d bytes in level, %d num cells total=%d, team size=%d, vector size=%d, #face=%d, Nf_max=%d\n", scr_bytes_fdf, KOKKOS_SHARED_LEVEL, num_cells_batch * batch_sz, team_size, vector_size, nfaces, Nf_max));
5639371c9d4SSatish Balay     Kokkos::parallel_for(
5649371c9d4SSatish Balay       "f, df", Kokkos::TeamPolicy<>(num_cells_batch * batch_sz, team_size, /* Kokkos::AUTO */ vector_size).set_scratch_size(KOKKOS_SHARED_LEVEL, Kokkos::PerTeam(scr_bytes_fdf)), KOKKOS_LAMBDA(const team_member team) {
5658fdabdddSMark Adams         const PetscInt b_Nelem = d_elem_offset[num_grids], b_elem_idx = team.league_rank() % b_Nelem, b_id = team.league_rank() / b_Nelem, IPf_sz_glb = d_ipf_offset[num_grids];
5668a6f2e61SMark Adams         // find my grid
5678fdabdddSMark Adams         PetscInt grid = 0;
5688fdabdddSMark Adams         while (b_elem_idx >= d_elem_offset[grid + 1]) grid++;
5698a6f2e61SMark Adams         {
5708fdabdddSMark Adams           const PetscInt loc_nip = d_numCells[grid] * Nq, loc_Nf = d_species_offset[grid + 1] - d_species_offset[grid], loc_elem = b_elem_idx - d_elem_offset[grid];
5718fdabdddSMark Adams           const PetscInt moffset = LAND_MOFFSET(b_id, grid, batch_sz, num_grids, d_mat_offset);
57219be780dSMark Adams           {
57319be780dSMark Adams             real2_scr_t      s_coef_k(team.team_scratch(KOKKOS_SHARED_LEVEL), Nf_max, Nb);
57419be780dSMark Adams             PetscScalar     *coef;
5758fdabdddSMark Adams             const PetscReal *invJe = &d_invJ_k((d_ip_offset[grid] + loc_elem * Nq) * dim * dim);
576a587d139SMark             // un pack IPData
5778a6f2e61SMark Adams             if (!maps[grid]) {
5788fdabdddSMark Adams               coef = &d_vertex_f[b_id * IPf_sz_glb + d_ipf_offset[grid] + loc_elem * Nb * loc_Nf]; // closure and IP indexing are the same
579af0767daSMark Adams             } else {
58019be780dSMark Adams               coef = s_coef_k.data();
58119be780dSMark Adams               Kokkos::parallel_for(Kokkos::TeamThreadRange(team, 0, (int)loc_Nf), [=](int f) {
58219be780dSMark Adams                 //for (int f = 0; f < loc_Nf; ++f) {
58319be780dSMark Adams                 Kokkos::parallel_for(Kokkos::ThreadVectorRange(team, 0, (int)Nb), [=](int b) {
58419be780dSMark Adams                   //for (int b = 0; b < Nb; ++b) {
58519be780dSMark Adams                   LandauIdx idx = maps[grid]->gIdx[loc_elem][f][b];
586af0767daSMark Adams                   if (idx >= 0) {
58719be780dSMark Adams                     coef[f * Nb + b] = d_vertex_f[idx + moffset]; // xarray data, not IP, need raw array to deal with CPU assemble case (not used)
588af0767daSMark Adams                   } else {
589af0767daSMark Adams                     idx              = -idx - 1;
59019be780dSMark Adams                     coef[f * Nb + b] = 0;
5918a6f2e61SMark Adams                     for (int q = 0; q < maps[grid]->num_face; q++) {
5928a6f2e61SMark Adams                       PetscInt    id    = maps[grid]->c_maps[idx][q].gid;
5938a6f2e61SMark Adams                       PetscScalar scale = maps[grid]->c_maps[idx][q].scale;
594f26f10aaSMark Adams                       if (id >= 0) coef[f * Nb + b] += scale * d_vertex_f[id + moffset];
595af0767daSMark Adams                     }
596af0767daSMark Adams                   }
59719be780dSMark Adams                 });
59819be780dSMark Adams               });
599af0767daSMark Adams             }
60019be780dSMark Adams             team.team_barrier();
601a587d139SMark             Kokkos::parallel_for(Kokkos::TeamThreadRange(team, 0, Nq), [=](int myQi) {
6028fdabdddSMark Adams               const PetscReal *const invJ = &invJe[myQi * dim * dim]; // b_elem_idx: batch element index
603a587d139SMark               const PetscReal       *Bq = &d_BB[myQi * Nb], *Dq = &d_DD[myQi * Nb * dim];
6048fdabdddSMark Adams               Kokkos::parallel_for(Kokkos::ThreadVectorRange(team, 0, (int)loc_Nf), [=](int f) {
605a587d139SMark                 PetscInt       b, e, d;
606e8d2b73aSMark Adams                 PetscReal      refSpaceDer[LANDAU_DIM];
6078fdabdddSMark Adams                 const PetscInt idx    = d_ipf_offset[grid] + f * loc_nip + loc_elem * Nq + myQi;
6088fdabdddSMark Adams                 d_fdf_k(b_id, 0, idx) = 0.0;
609a587d139SMark                 for (d = 0; d < LANDAU_DIM; ++d) refSpaceDer[d] = 0.0;
610a587d139SMark                 for (b = 0; b < Nb; ++b) {
61119be780dSMark Adams                   d_fdf_k(b_id, 0, idx) += Bq[b] * PetscRealPart(coef[f * Nb + b]);
61219be780dSMark Adams                   for (d = 0; d < dim; ++d) refSpaceDer[d] += Dq[b * dim + d] * PetscRealPart(coef[f * Nb + b]);
613a587d139SMark                 }
614a587d139SMark                 for (d = 0; d < dim; ++d) {
615ad540459SPierre Jolivet                   for (e = 0, d_fdf_k(b_id, d + 1, idx) = 0.0; e < dim; ++e) d_fdf_k(b_id, d + 1, idx) += invJ[e * dim + d] * refSpaceDer[e];
616a587d139SMark                 }
6178a6f2e61SMark Adams               }); // f
6188a6f2e61SMark Adams             });   // myQi
6198a6f2e61SMark Adams           }
62019be780dSMark Adams           team.team_barrier();
62119be780dSMark Adams         } // 'grid' scope
6228a6f2e61SMark Adams       }); // global elems - fdf
6238a6f2e61SMark Adams     Kokkos::fence();
624bfbbad94Smarkadams4     PetscCall(PetscLogGpuTimeEnd());
6259566063dSJacob Faibussowitsch     PetscCall(PetscLogEventEnd(events[8], 0, 0, 0, 0));
626e6118d12SMark Adams     // Jacobian
627d9008a5dSMark Adams     int         maximum_shared_mem_size = 64000;
628a16fd2c9SJacob Faibussowitsch     PetscDevice device;
629a16fd2c9SJacob Faibussowitsch 
630a16fd2c9SJacob Faibussowitsch     PetscCall(PetscDeviceGetDefault_Internal(&device));
631a16fd2c9SJacob Faibussowitsch     PetscCall(PetscDeviceGetAttribute(device, PETSC_DEVICE_ATTR_SIZE_T_SHARED_MEM_PER_BLOCK, &maximum_shared_mem_size));
632d9008a5dSMark Adams     const int jac_scr_bytes    = 2 * (g2_scr_t::shmem_size(dim, Nf_max, Nq) + g3_scr_t::shmem_size(dim, dim, Nf_max, Nq));
633d9008a5dSMark Adams     const int jac_shared_level = (jac_scr_bytes > maximum_shared_mem_size) ? 1 : KOKKOS_SHARED_LEVEL;
634*ae6bf4a8Smarkadams4     // device function/lambda
635d71ae5a4SJacob Faibussowitsch     auto jac_lambda = KOKKOS_LAMBDA(const team_member team)
636d71ae5a4SJacob Faibussowitsch     {
6378fdabdddSMark Adams       const PetscInt b_Nelem = d_elem_offset[num_grids], b_elem_idx = team.league_rank() % b_Nelem, b_id = team.league_rank() / b_Nelem;
6388a6f2e61SMark Adams       // find my grid
6398fdabdddSMark Adams       PetscInt grid = 0;
6408fdabdddSMark Adams       while (b_elem_idx >= d_elem_offset[grid + 1]) grid++;
6418a6f2e61SMark Adams       {
64219be780dSMark Adams         const PetscInt loc_Nf = d_species_offset[grid + 1] - d_species_offset[grid], loc_elem = b_elem_idx - d_elem_offset[grid];
6438fdabdddSMark Adams         const PetscInt moffset = LAND_MOFFSET(b_id, grid, batch_sz, num_grids, d_mat_offset);
644bfbbad94Smarkadams4         const PetscInt f_off   = d_species_offset[grid];
645bfbbad94Smarkadams4   #ifdef LAND_SUPPORT_CPU_ASS
646bfbbad94Smarkadams4         const PetscInt totDim  = loc_Nf * Nq;
647bfbbad94Smarkadams4   #endif
648d9008a5dSMark Adams         g2_scr_t       g2(team.team_scratch(jac_shared_level), dim, loc_Nf, Nq);
649d9008a5dSMark Adams         g3_scr_t       g3(team.team_scratch(jac_shared_level), dim, dim, loc_Nf, Nq);
650d9008a5dSMark Adams         g2_scr_t       gg2(team.team_scratch(jac_shared_level), dim, loc_Nf, Nq);
651d9008a5dSMark Adams         g3_scr_t       gg3(team.team_scratch(jac_shared_level), dim, dim, loc_Nf, Nq);
652e0eea495SMark         // get g2[] & g3[]
653e0eea495SMark         Kokkos::parallel_for(Kokkos::TeamThreadRange(team, 0, Nq), [=](int myQi) {
654e0eea495SMark           using Kokkos::parallel_reduce;
6558fdabdddSMark Adams           const PetscInt                    jpidx_glb = d_ip_offset[grid] + loc_elem * Nq + myQi;
6568fdabdddSMark Adams           const PetscReal                  *invJ      = &d_invJ_k(jpidx_glb * dim * dim);
6578fdabdddSMark Adams           const PetscReal                   vj[3] = {d_x[jpidx_glb], d_y[jpidx_glb], d_z ? d_z[jpidx_glb] : 0}, wj = d_w[jpidx_glb];
6588a6f2e61SMark Adams           landau_inner_red::TensorValueType gg_temp; // reduce on part of gg2 and g33 for IP jpidx_g
6599371c9d4SSatish Balay           Kokkos::parallel_reduce(
6609371c9d4SSatish Balay             Kokkos::ThreadVectorRange(team, (int)d_ip_offset[num_grids]),
6619371c9d4SSatish Balay             [=](const int &ipidx, landau_inner_red::TensorValueType &ggg) {
662e8d2b73aSMark Adams               const PetscReal wi = d_w[ipidx], x = d_x[ipidx], y = d_y[ipidx];
66352cdd6eaSMark               PetscReal       temp1[3] = {0, 0, 0}, temp2 = 0;
6646b664d00Smarkadams4               PetscInt        fieldB, d2, d3, f_off_r, grid_r, ipidx_g, nip_loc_r, loc_Nf_r;
665e0eea495SMark   #if LANDAU_DIM == 2
6668a6f2e61SMark Adams               PetscReal       Ud[2][2], Uk[2][2], mask = (PetscAbs(vj[0] - x) < 100 * PETSC_SQRT_MACHINE_EPSILON && PetscAbs(vj[1] - y) < 100 * PETSC_SQRT_MACHINE_EPSILON) ? 0. : 1.;
6678a6f2e61SMark Adams               LandauTensor2D(vj, x, y, Ud, Uk, mask);
66852cdd6eaSMark   #else
6697620afa1SMark Adams                 PetscReal U[3][3], z = d_z[ipidx], mask = (PetscAbs(vj[0]-x) < 100*PETSC_SQRT_MACHINE_EPSILON && PetscAbs(vj[1]-y) < 100*PETSC_SQRT_MACHINE_EPSILON && PetscAbs(vj[2]-z) < 100*PETSC_SQRT_MACHINE_EPSILON) ? 0. : 1.;
6708a6f2e61SMark Adams                 LandauTensor3D(vj, x, y, z, U, mask);
67152cdd6eaSMark   #endif
6728a6f2e61SMark Adams               grid_r = 0;
6738a6f2e61SMark Adams               while (ipidx >= d_ip_offset[grid_r + 1]) grid_r++; // yuck search for grid
6748a6f2e61SMark Adams               f_off_r   = d_species_offset[grid_r];
6758a6f2e61SMark Adams               ipidx_g   = ipidx - d_ip_offset[grid_r];
6768a6f2e61SMark Adams               nip_loc_r = d_numCells[grid_r] * Nq;
6778fdabdddSMark Adams               loc_Nf_r  = d_species_offset[grid_r + 1] - d_species_offset[grid_r];
678*ae6bf4a8Smarkadams4               for (fieldB = 0; fieldB < loc_Nf_r; ++fieldB) { // fieldB is \beta  d_lambdas[grid][grid_r]
6796b664d00Smarkadams4                 const PetscInt idx = d_ipf_offset[grid_r] + fieldB * nip_loc_r + ipidx_g;
680*ae6bf4a8Smarkadams4                 temp1[0] += d_fdf_k(b_id, 1, idx) * d_beta[fieldB + f_off_r] * d_invMass[fieldB + f_off_r] * d_lambdas[LANDAU_MAX_GRIDS * grid + grid_r];
681*ae6bf4a8Smarkadams4                 temp1[1] += d_fdf_k(b_id, 2, idx) * d_beta[fieldB + f_off_r] * d_invMass[fieldB + f_off_r] * d_lambdas[LANDAU_MAX_GRIDS * grid + grid_r];
68252cdd6eaSMark   #if LANDAU_DIM == 3
683*ae6bf4a8Smarkadams4                 temp1[2] += d_fdf_k(b_id, 3, idx) * d_beta[fieldB + f_off_r] * d_invMass[fieldB + f_off_r] * d_lambdas[LANDAU_MAX_GRIDS * grid + grid_r];
68452cdd6eaSMark   #endif
685*ae6bf4a8Smarkadams4                 temp2 += d_fdf_k(b_id, 0, idx) * d_beta[fieldB + f_off_r] * d_lambdas[LANDAU_MAX_GRIDS * grid + grid_r];
68652cdd6eaSMark               }
68752cdd6eaSMark               temp1[0] *= wi;
68852cdd6eaSMark               temp1[1] *= wi;
68952cdd6eaSMark   #if LANDAU_DIM == 3
69052cdd6eaSMark               temp1[2] *= wi;
69152cdd6eaSMark   #endif
69252cdd6eaSMark               temp2 *= wi;
69352cdd6eaSMark   #if LANDAU_DIM == 2
69452cdd6eaSMark               for (d2 = 0; d2 < 2; d2++) {
695e0eea495SMark                 for (d3 = 0; d3 < 2; ++d3) {
696e0eea495SMark                   /* K = U * grad(f): g2=e: i,A */
69752cdd6eaSMark                   ggg.gg2[d2] += Uk[d2][d3] * temp1[d3];
698e0eea495SMark                   /* D = -U * (I \kron (fx)): g3=f: i,j,A */
69952cdd6eaSMark                   ggg.gg3[d2][d3] += Ud[d2][d3] * temp2;
700e0eea495SMark                 }
701e0eea495SMark               }
702e0eea495SMark   #else
703e0eea495SMark                 for (d2 = 0; d2 < 3; ++d2) {
704e0eea495SMark                   for (d3 = 0; d3 < 3; ++d3) {
705e0eea495SMark                     /* K = U * grad(f): g2 = e: i,A */
70652cdd6eaSMark                     ggg.gg2[d2] += U[d2][d3]*temp1[d3];
707e0eea495SMark                     /* D = -U * (I \kron (fx)): g3 = f: i,j,A */
70852cdd6eaSMark                     ggg.gg3[d2][d3] += U[d2][d3]*temp2;
709e0eea495SMark                   }
710e0eea495SMark                 }
711e0eea495SMark   #endif
7129371c9d4SSatish Balay             },
7139371c9d4SSatish Balay             Kokkos::Sum<landau_inner_red::TensorValueType>(gg_temp));
71452cdd6eaSMark           // add alpha and put in gg2/3
7156b664d00Smarkadams4           Kokkos::parallel_for(Kokkos::ThreadVectorRange(team, (int)loc_Nf), [&](const int &fieldA) { // \alpha
71652cdd6eaSMark             PetscInt d2, d3;
71752cdd6eaSMark             for (d2 = 0; d2 < dim; d2++) {
7188a6f2e61SMark Adams               gg2(d2, fieldA, myQi) = gg_temp.gg2[d2] * d_alpha[fieldA + f_off];
719ad540459SPierre Jolivet               for (d3 = 0; d3 < dim; d3++) gg3(d2, d3, fieldA, myQi) = -gg_temp.gg3[d2][d3] * d_alpha[fieldA + f_off] * d_invMass[fieldA + f_off];
72052cdd6eaSMark             }
721e0eea495SMark           });
72252cdd6eaSMark           /* add electric field term once per IP */
7239371c9d4SSatish Balay           Kokkos::parallel_for(Kokkos::ThreadVectorRange(team, (int)loc_Nf), [&](const int &fieldA) { gg2(dim - 1, fieldA, myQi) += d_Eq_m[fieldA + f_off]; });
7248fdabdddSMark Adams           Kokkos::parallel_for(Kokkos::ThreadVectorRange(team, (int)loc_Nf), [=](const int &fieldA) {
725e0eea495SMark             int d, d2, d3, dp;
726e0eea495SMark             /* Jacobian transform - g2, g3 - per thread (2D) */
727e0eea495SMark             for (d = 0; d < dim; ++d) {
72852cdd6eaSMark               g2(d, fieldA, myQi) = 0;
729e0eea495SMark               for (d2 = 0; d2 < dim; ++d2) {
7308fdabdddSMark Adams                 g2(d, fieldA, myQi) += invJ[d * dim + d2] * gg2(d2, fieldA, myQi);
73152cdd6eaSMark                 g3(d, d2, fieldA, myQi) = 0;
732e0eea495SMark                 for (d3 = 0; d3 < dim; ++d3) {
733ad540459SPierre Jolivet                   for (dp = 0; dp < dim; ++dp) g3(d, d2, fieldA, myQi) += invJ[d * dim + d3] * gg3(d3, dp, fieldA, myQi) * invJ[d2 * dim + dp];
734e0eea495SMark                 }
73552cdd6eaSMark                 g3(d, d2, fieldA, myQi) *= wj;
736e0eea495SMark               }
73752cdd6eaSMark               g2(d, fieldA, myQi) *= wj;
738e0eea495SMark             }
739e0eea495SMark           });
74052cdd6eaSMark         }); // Nq
741e0eea495SMark         team.team_barrier();
7421eec90e4SMark Adams         { /* assemble */
7438fdabdddSMark Adams           for (PetscInt fieldA = 0; fieldA < loc_Nf; fieldA++) {
744930e68a5SMark Adams             /* assemble */
7451eec90e4SMark Adams             Kokkos::parallel_for(Kokkos::TeamThreadRange(team, 0, Nb), [=](int f) {
7461eec90e4SMark Adams               Kokkos::parallel_for(Kokkos::ThreadVectorRange(team, 0, Nb), [=](int g) {
7471eec90e4SMark Adams                 PetscScalar t = 0;
7481eec90e4SMark Adams                 for (int qj = 0; qj < Nq; qj++) { // look at others integration points
749e0eea495SMark                   const PetscReal *BJq = &d_BB[qj * Nb], *DIq = &d_DD[qj * Nb * dim];
7501eec90e4SMark Adams                   for (int d = 0; d < dim; ++d) {
7511eec90e4SMark Adams                     t += DIq[f * dim + d] * g2(d, fieldA, qj) * BJq[g];
752ad540459SPierre Jolivet                     for (int d2 = 0; d2 < dim; ++d2) t += DIq[f * dim + d] * g3(d, d2, fieldA, qj) * DIq[g * dim + d2];
753e0eea495SMark                   }
754930e68a5SMark Adams                 }
7558a6f2e61SMark Adams                 if (elem_mat_num_cells_max_grid) { // CPU assembly
756bfbbad94Smarkadams4   #ifdef LAND_SUPPORT_CPU_ASS
7571eec90e4SMark Adams                   const PetscInt fOff                     = (fieldA * Nb + f) * totDim + fieldA * Nb + g;
7588fdabdddSMark Adams                   d_elem_mats(b_id, grid, loc_elem, fOff) = t;
759bfbbad94Smarkadams4   #endif
76019be780dSMark Adams                 } else {
7613ba16761SJacob Faibussowitsch                   static_cast<void>(landau_mat_assemble(d_mat, d_coo_vals, t, f, g, Nb, moffset, loc_elem, fieldA, maps[grid], d_coo_elem_offsets, d_coo_elem_fullNb, d_coo_elem_point_offsets, b_elem_idx, b_id * coo_sz_batch));
76219be780dSMark Adams                 }
7631eec90e4SMark Adams               });
7641eec90e4SMark Adams             });
7651eec90e4SMark Adams           }
766a587d139SMark         }
76719be780dSMark Adams       } // scope with 'grid'
76881451871SMark Adams     };
7699566063dSJacob Faibussowitsch     PetscCall(PetscLogEventBegin(events[4], 0, 0, 0, 0));
7709566063dSJacob Faibussowitsch     PetscCall(PetscLogGpuTimeBegin());
771d9008a5dSMark Adams     PetscCall(PetscInfo(plex[0], "Jacobian shared memory size: %d bytes in level %s (max shared=%d), num cells total=%d, team size=%d, vector size=%d, #face=%d, Nf_max=%d\n", jac_scr_bytes, jac_shared_level == 0 ? "local" : "global", maximum_shared_mem_size, num_cells_batch * batch_sz, team_size, vector_size, nfaces, Nf_max));
772d9008a5dSMark Adams     Kokkos::parallel_for("Jacobian", Kokkos::TeamPolicy<>(num_cells_batch * batch_sz, team_size, vector_size).set_scratch_size(jac_shared_level, Kokkos::PerTeam(jac_scr_bytes)), jac_lambda); // Kokkos::LaunchBounds<512,2>
773d9008a5dSMark Adams     Kokkos::fence();
7749566063dSJacob Faibussowitsch     PetscCall(PetscLogGpuTimeEnd());
7759566063dSJacob Faibussowitsch     PetscCall(PetscLogEventEnd(events[4], 0, 0, 0, 0));
77619be780dSMark Adams     if (d_vertex_f_k) delete d_vertex_f_k;
777dbabbaf5SMark Adams   } else { // mass
7789566063dSJacob Faibussowitsch     PetscCall(PetscLogEventBegin(events[16], 0, 0, 0, 0));
7799566063dSJacob Faibussowitsch     PetscCall(PetscLogGpuTimeBegin());
780dbabbaf5SMark Adams     PetscCall(PetscInfo(plex[0], "Mass team size=%d vector size=%d #face=%d Nb=%" PetscInt_FMT ", %s assembly\n", team_size, vector_size, nfaces, Nb, d_coo_vals ? "COO" : "CSR"));
7819371c9d4SSatish Balay     Kokkos::parallel_for(
7829371c9d4SSatish Balay       "Mass", Kokkos::TeamPolicy<>(num_cells_batch * batch_sz, team_size, vector_size), KOKKOS_LAMBDA(const team_member team) { // Kokkos::LaunchBounds<512,4>
7838fdabdddSMark Adams         const PetscInt b_Nelem = d_elem_offset[num_grids], b_elem_idx = team.league_rank() % b_Nelem, b_id = team.league_rank() / b_Nelem;
7848a6f2e61SMark Adams         // find my grid
7858fdabdddSMark Adams         PetscInt grid = 0;
7868fdabdddSMark Adams         while (b_elem_idx >= d_elem_offset[grid + 1]) grid++;
7878a6f2e61SMark Adams         {
788bfbbad94Smarkadams4           const PetscInt loc_Nf = d_species_offset[grid + 1] - d_species_offset[grid], loc_elem = b_elem_idx - d_elem_offset[grid], jpidx_0 = d_ip_offset[grid] + loc_elem * Nq;
789bfbbad94Smarkadams4   #ifdef LAND_SUPPORT_CPU_ASS
790bfbbad94Smarkadams4           const PetscInt totDim  = loc_Nf * Nq;
791bfbbad94Smarkadams4   #endif
7928fdabdddSMark Adams           const PetscInt moffset = LAND_MOFFSET(b_id, grid, batch_sz, num_grids, d_mat_offset);
7938fdabdddSMark Adams           for (int fieldA = 0; fieldA < loc_Nf; fieldA++) {
7941eec90e4SMark Adams             /* assemble */
7951eec90e4SMark Adams             Kokkos::parallel_for(Kokkos::TeamThreadRange(team, 0, Nb), [=](int f) {
7961eec90e4SMark Adams               Kokkos::parallel_for(Kokkos::ThreadVectorRange(team, 0, Nb), [=](int g) {
7971eec90e4SMark Adams                 PetscScalar t = 0;
7981eec90e4SMark Adams                 for (int qj = 0; qj < Nq; qj++) { // look at others integration points
7991eec90e4SMark Adams                   const PetscReal *BJq       = &d_BB[qj * Nb];
8008fdabdddSMark Adams                   const PetscInt   jpidx_glb = jpidx_0 + qj;
8018a6f2e61SMark Adams                   if (dim == 2) {
8028fdabdddSMark Adams                     t += BJq[f] * d_w_k(jpidx_glb) * shift * BJq[g] * 2. * PETSC_PI;
8038a6f2e61SMark Adams                   } else {
8048fdabdddSMark Adams                     t += BJq[f] * d_w_k(jpidx_glb) * shift * BJq[g];
8051eec90e4SMark Adams                   }
8068a6f2e61SMark Adams                 }
8078a6f2e61SMark Adams                 if (elem_mat_num_cells_max_grid) {
808bfbbad94Smarkadams4   #ifdef LAND_SUPPORT_CPU_ASS
8091eec90e4SMark Adams                   const PetscInt fOff                     = (fieldA * Nb + f) * totDim + fieldA * Nb + g;
8108fdabdddSMark Adams                   d_elem_mats(b_id, grid, loc_elem, fOff) = t;
811bfbbad94Smarkadams4   #endif
812ad4b5651SMark Adams                 } else {
8133ba16761SJacob Faibussowitsch                   static_cast<void>(landau_mat_assemble(d_mat, d_coo_vals, t, f, g, Nb, moffset, loc_elem, fieldA, maps[grid], d_coo_elem_offsets, d_coo_elem_fullNb, d_coo_elem_point_offsets, b_elem_idx, b_id * coo_sz_batch));
814ad4b5651SMark Adams                 }
815e0eea495SMark               });
816e0eea495SMark             });
81713241b68SMark Adams           } // field
81813241b68SMark Adams         }   // grid
8191eec90e4SMark Adams       });
820d9008a5dSMark Adams     Kokkos::fence();
8219566063dSJacob Faibussowitsch     PetscCall(PetscLogGpuTimeEnd());
8229566063dSJacob Faibussowitsch     PetscCall(PetscLogEventEnd(events[16], 0, 0, 0, 0));
8231eec90e4SMark Adams   }
824bfc784b7SMark Adams   if (d_coo_vals) {
8259566063dSJacob Faibussowitsch     PetscCall(MatSetValuesCOO(JacP, d_coo_vals, ADD_VALUES));
826bfbbad94Smarkadams4   #ifndef LAND_SUPPORT_CPU_ASS
827bfbbad94Smarkadams4     Kokkos::fence();                        // for timers
828bfbbad94Smarkadams4   #endif
829bfc784b7SMark Adams   } else if (elem_mat_num_cells_max_grid) { // CPU assembly
830bfbbad94Smarkadams4   #ifdef LAND_SUPPORT_CPU_ASS
8318fdabdddSMark Adams     Kokkos::View<PetscScalar ****, Kokkos::LayoutRight>::HostMirror h_elem_mats = Kokkos::create_mirror_view(d_elem_mats);
832e0eea495SMark     Kokkos::deep_copy(h_elem_mats, d_elem_mats);
833d618d24fSMark Adams     PetscCheck(!container, PETSC_COMM_SELF, PETSC_ERR_PLIB, "?????");
8348fdabdddSMark Adams     for (PetscInt b_id = 0; b_id < batch_sz; b_id++) { // OpenMP (once)
8358a6f2e61SMark Adams       for (PetscInt grid = 0; grid < num_grids; grid++) {
8368a6f2e61SMark Adams         PetscSection       section, globalSection;
8378a6f2e61SMark Adams         PetscInt           cStart, cEnd;
8388fdabdddSMark Adams         Mat                B       = subJ[LAND_PACK_IDX(b_id, grid)];
8398fdabdddSMark Adams         PetscInt           moffset = LAND_MOFFSET(b_id, grid, batch_sz, num_grids, a_mat_offset), nloc, nzl, colbuf[1024], row;
8408fdabdddSMark Adams         const PetscInt    *cols;
8418fdabdddSMark Adams         const PetscScalar *vals;
8429566063dSJacob Faibussowitsch         PetscCall(PetscLogEventBegin(events[5], 0, 0, 0, 0));
8439566063dSJacob Faibussowitsch         PetscCall(DMPlexGetHeightStratum(plex[grid], 0, &cStart, &cEnd));
8449566063dSJacob Faibussowitsch         PetscCall(DMGetLocalSection(plex[grid], &section));
8459566063dSJacob Faibussowitsch         PetscCall(DMGetGlobalSection(plex[grid], &globalSection));
8469566063dSJacob Faibussowitsch         PetscCall(PetscLogEventEnd(events[5], 0, 0, 0, 0));
8479566063dSJacob Faibussowitsch         PetscCall(PetscLogEventBegin(events[6], 0, 0, 0, 0));
8488a6f2e61SMark Adams         for (PetscInt ej = cStart; ej < cEnd; ++ej) {
8498fdabdddSMark Adams           const PetscScalar *elMat = &h_elem_mats(b_id, grid, ej - cStart, 0);
8509566063dSJacob Faibussowitsch           PetscCall(DMPlexMatSetClosure(plex[grid], section, globalSection, B, ej, elMat, ADD_VALUES));
8518a6f2e61SMark Adams           if (grid == 0 && ej == -1) {
8528fdabdddSMark Adams             const PetscInt loc_Nf = a_species_offset[grid + 1] - a_species_offset[grid], totDim = loc_Nf * Nq;
853e0eea495SMark             int            d, f;
8548a6f2e61SMark Adams             PetscPrintf(PETSC_COMM_SELF, "Kokkos Element matrix %d/%d\n", 1, (int)a_numCells[grid]);
855e0eea495SMark             for (d = 0; d < totDim; ++d) {
85652cdd6eaSMark               for (f = 0; f < totDim; ++f) PetscPrintf(PETSC_COMM_SELF, " %12.5e", PetscRealPart(elMat[d * totDim + f]));
85752cdd6eaSMark               PetscPrintf(PETSC_COMM_SELF, "\n");
858e0eea495SMark             }
859e8d2b73aSMark Adams             exit(14);
860e0eea495SMark           }
861e0eea495SMark         }
8628fdabdddSMark Adams         // move nest matrix to global JacP
8639566063dSJacob Faibussowitsch         PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
8649566063dSJacob Faibussowitsch         PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
8659566063dSJacob Faibussowitsch         PetscCall(MatGetSize(B, &nloc, NULL));
8668a6f2e61SMark Adams         for (int i = 0; i < nloc; i++) {
8679566063dSJacob Faibussowitsch           PetscCall(MatGetRow(B, i, &nzl, &cols, &vals));
86863a3b9bcSJacob Faibussowitsch           PetscCheck(nzl <= 1024, PetscObjectComm((PetscObject)B), PETSC_ERR_PLIB, "Row too big: %" PetscInt_FMT, nzl);
8698a6f2e61SMark Adams           for (int j = 0; j < nzl; j++) colbuf[j] = cols[j] + moffset;
8708a6f2e61SMark Adams           row = i + moffset;
8719566063dSJacob Faibussowitsch           PetscCall(MatSetValues(JacP, 1, &row, nzl, colbuf, vals, ADD_VALUES));
8729566063dSJacob Faibussowitsch           PetscCall(MatRestoreRow(B, i, &nzl, &cols, &vals));
8738a6f2e61SMark Adams         }
8749566063dSJacob Faibussowitsch         PetscCall(MatDestroy(&subJ[LAND_PACK_IDX(b_id, grid)]));
8759566063dSJacob Faibussowitsch         PetscCall(PetscLogEventEnd(events[6], 0, 0, 0, 0));
8768a6f2e61SMark Adams       } // grids
877a587d139SMark     }
878bfbbad94Smarkadams4   #else
879bfbbad94Smarkadams4     SETERRQ(PETSC_COMM_SELF, PETSC_ERR_PLIB, "CPU assembly not supported");
880bfbbad94Smarkadams4   #endif
8818fdabdddSMark Adams   }
8823ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
883e0eea495SMark }
884e0eea495SMark } // extern "C"
8858d80707aSStefano Zampini #endif
886