xref: /petsc/src/ts/utils/dmplexlandau/kokkos/landau.kokkos.cxx (revision bd08a17192682af971916e4fe1c86b58629c8c47)
1e0eea495SMark /*
2e0eea495SMark   Implements the Kokkos kernel
3e0eea495SMark */
4e0eea495SMark #define PETSC_SKIP_CXX_COMPLEX_FIX
5e0eea495SMark #include <petscconf.h>
6e0eea495SMark #include <petsc/private/dmpleximpl.h>   /*I   "petscdmplex.h"   I*/
7e0eea495SMark #include <petsclandau.h>
8e0eea495SMark #include <petscts.h>
9a587d139SMark #include <petscveckokkos.hpp>
10a587d139SMark 
11e0eea495SMark #include <Kokkos_Core.hpp>
12e0eea495SMark #include <cstdio>
13e0eea495SMark typedef Kokkos::TeamPolicy<>::member_type team_member;
14e0eea495SMark #define PETSC_DEVICE_FUNC_DECL KOKKOS_INLINE_FUNCTION
15e0eea495SMark #include "../land_tensors.h"
16a587d139SMark #define atomicAdd(e, f) Kokkos::atomic_fetch_add(e, f)
17a587d139SMark #include <petscaijdevice.h>
18a587d139SMark #undef atomicAdd
19e0eea495SMark 
20e0eea495SMark namespace landau_inner_red {  // namespace helps with name resolution in reduction identity
2152cdd6eaSMark   template< class ScalarType >
22e0eea495SMark   struct array_type {
2352cdd6eaSMark     ScalarType gg2[LANDAU_DIM];
2452cdd6eaSMark     ScalarType gg3[LANDAU_DIM][LANDAU_DIM];
25e0eea495SMark 
26e0eea495SMark     KOKKOS_INLINE_FUNCTION   // Default constructor - Initialize to 0's
27e0eea495SMark     array_type() {
28e0eea495SMark       for (int j = 0; j < LANDAU_DIM; j++){
2952cdd6eaSMark         gg2[j] = 0;
30e0eea495SMark         for (int k = 0; k < LANDAU_DIM; k++){
3152cdd6eaSMark           gg3[j][k] = 0;
32e0eea495SMark         }
33e0eea495SMark       }
34e0eea495SMark     }
35e0eea495SMark     KOKKOS_INLINE_FUNCTION   // Copy Constructor
36e0eea495SMark     array_type(const array_type & rhs) {
37e0eea495SMark       for (int j = 0; j < LANDAU_DIM; j++){
3852cdd6eaSMark         gg2[j] = rhs.gg2[j];
39e0eea495SMark         for (int k = 0; k < LANDAU_DIM; k++){
4052cdd6eaSMark           gg3[j][k] = rhs.gg3[j][k];
41e0eea495SMark         }
42e0eea495SMark       }
43e0eea495SMark     }
44e0eea495SMark     KOKKOS_INLINE_FUNCTION   // add operator
45e0eea495SMark     array_type& operator += (const array_type& src) {
46e0eea495SMark       for (int j = 0; j < LANDAU_DIM; j++){
4752cdd6eaSMark         gg2[j] += src.gg2[j];
48e0eea495SMark         for (int k = 0; k < LANDAU_DIM; k++){
4952cdd6eaSMark           gg3[j][k] += src.gg3[j][k];
50e0eea495SMark         }
51e0eea495SMark       }
52e0eea495SMark       return *this;
53e0eea495SMark     }
54e0eea495SMark     KOKKOS_INLINE_FUNCTION   // volatile add operator
55e0eea495SMark     void operator += (const volatile array_type& src) volatile {
56e0eea495SMark       for (int j = 0; j < LANDAU_DIM; j++){
5752cdd6eaSMark         gg2[j] += src.gg2[j];
58e0eea495SMark         for (int k = 0; k < LANDAU_DIM; k++){
5952cdd6eaSMark           gg3[j][k] += src.gg3[j][k];
60e0eea495SMark         }
61e0eea495SMark       }
62e0eea495SMark     }
63e0eea495SMark   };
6452cdd6eaSMark   typedef array_type<PetscReal> TensorValueType;  // used to simplify code below
65e0eea495SMark }
66e0eea495SMark 
67e0eea495SMark namespace Kokkos { //reduction identity must be defined in Kokkos namespace
68e0eea495SMark   template<>
6952cdd6eaSMark   struct reduction_identity< landau_inner_red::TensorValueType > {
7052cdd6eaSMark     KOKKOS_FORCEINLINE_FUNCTION static landau_inner_red::TensorValueType sum() {
7152cdd6eaSMark       return landau_inner_red::TensorValueType();
72e0eea495SMark     }
73e0eea495SMark   };
74e0eea495SMark }
75e0eea495SMark 
76e0eea495SMark extern "C"  {
77a587d139SMark   PetscErrorCode LandauKokkosCreateMatMaps(P4estVertexMaps *maps, pointInterpolationP4est (*pointMaps)[LANDAU_MAX_Q_FACE], PetscInt Nf, PetscInt Nq)
78a587d139SMark   {
79a587d139SMark     P4estVertexMaps   h_maps;  /* host container */
80a587d139SMark     const Kokkos::View<pointInterpolationP4est*[LANDAU_MAX_Q_FACE], Kokkos::LayoutRight, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> >    h_points ((pointInterpolationP4est*)pointMaps, maps->num_reduced);
81a587d139SMark     const Kokkos::View< LandauIdx*[LANDAU_MAX_SPECIES][LANDAU_MAX_NQ], Kokkos::LayoutRight, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_gidx ((LandauIdx*)maps->gIdx, maps->num_elements);
82a587d139SMark     Kokkos::View<pointInterpolationP4est*[LANDAU_MAX_Q_FACE], Kokkos::LayoutRight>   *d_points = new Kokkos::View<pointInterpolationP4est*[LANDAU_MAX_Q_FACE], Kokkos::LayoutRight>("points", maps->num_reduced);
83a587d139SMark     Kokkos::View<LandauIdx*[LANDAU_MAX_SPECIES][LANDAU_MAX_NQ], Kokkos::LayoutRight> *d_gidx = new Kokkos::View<LandauIdx*[LANDAU_MAX_SPECIES][LANDAU_MAX_NQ], Kokkos::LayoutRight>("gIdx", maps->num_elements);
84a587d139SMark 
85a587d139SMark     PetscFunctionBegin;
86a587d139SMark     Kokkos::deep_copy (*d_gidx, h_gidx);
87a587d139SMark     Kokkos::deep_copy (*d_points, h_points);
88a587d139SMark     h_maps.num_elements = maps->num_elements;
89a587d139SMark     h_maps.num_face = maps->num_face;
90a587d139SMark     h_maps.num_reduced = maps->num_reduced;
91a587d139SMark     h_maps.deviceType = maps->deviceType;
92a587d139SMark     h_maps.Nf = Nf;
93a587d139SMark     h_maps.Nq = Nq;
94a587d139SMark     h_maps.c_maps = (pointInterpolationP4est (*)[LANDAU_MAX_Q_FACE]) d_points->data();
95a587d139SMark     maps->vp1 = (void*)d_points;
96a587d139SMark     h_maps.gIdx = (LandauIdx (*)[LANDAU_MAX_SPECIES][LANDAU_MAX_NQ]) d_gidx->data();
97a587d139SMark     maps->vp2 = (void*)d_gidx;
98a587d139SMark     {
99a587d139SMark       Kokkos::View<P4estVertexMaps, Kokkos::HostSpace> h_maps_k(&h_maps);
100a587d139SMark       Kokkos::View<P4estVertexMaps>                    *d_maps_k = new Kokkos::View<P4estVertexMaps>(Kokkos::create_mirror(DeviceMemorySpace(),h_maps_k));
101a587d139SMark       Kokkos::deep_copy (*d_maps_k, h_maps_k);
102a587d139SMark       maps->data = d_maps_k->data();
103a587d139SMark       maps->vp3 = (void*)d_maps_k;
104a587d139SMark     }
105a587d139SMark     PetscFunctionReturn(0);
106a587d139SMark   }
107a587d139SMark   PetscErrorCode LandauKokkosDestroyMatMaps(P4estVertexMaps *maps)
108a587d139SMark   {
109a587d139SMark     Kokkos::View<pointInterpolationP4est*[LANDAU_MAX_Q_FACE], Kokkos::LayoutRight>  *a = (Kokkos::View<pointInterpolationP4est*[LANDAU_MAX_Q_FACE], Kokkos::LayoutRight>*)maps->vp1;
110a587d139SMark     Kokkos::View<LandauIdx*[LANDAU_MAX_SPECIES][LANDAU_MAX_NQ], Kokkos::LayoutRight>*b = (Kokkos::View<LandauIdx*[LANDAU_MAX_SPECIES][LANDAU_MAX_NQ], Kokkos::LayoutRight>*)maps->vp2;
111a587d139SMark     Kokkos::View<P4estVertexMaps*>                                                  *c = (Kokkos::View<P4estVertexMaps*>*)maps->vp3;
112a587d139SMark     delete a;  delete b;  delete c;
113a587d139SMark     PetscFunctionReturn(0);
114a587d139SMark   }
115a587d139SMark 
116e8d2b73aSMark Adams   PetscErrorCode LandauKokkosStaticDataSet(DM plex, const PetscInt Nq, PetscReal nu_alpha[], PetscReal nu_beta[], PetscReal a_invMass[], PetscReal a_invJ[], PetscReal a_mass_w[],
117e8d2b73aSMark Adams                                            PetscReal a_x[], PetscReal a_y[], PetscReal a_z[], PetscReal a_w[], LandauGeomData *SData_d)
118e0eea495SMark   {
119e0eea495SMark     PetscReal       *BB,*DD;
120e8d2b73aSMark Adams     PetscErrorCode  ierr;
121e8d2b73aSMark Adams     PetscTabulation *Tf;
122e0eea495SMark     LandauCtx       *ctx;
123e8d2b73aSMark Adams     PetscInt        *Nbf,dim,Nf,Nb,nip,cStart,cEnd;
124e8d2b73aSMark Adams     PetscDS         prob;
125e0eea495SMark 
126e0eea495SMark     PetscFunctionBegin;
127e0eea495SMark     ierr = DMGetApplicationContext(plex, &ctx);CHKERRQ(ierr);
128e0eea495SMark     if (!ctx) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_PLIB, "no context");
129e0eea495SMark     ierr = DMGetDimension(plex, &dim);CHKERRQ(ierr);
130e0eea495SMark     ierr = DMPlexGetHeightStratum(plex,0,&cStart,&cEnd);CHKERRQ(ierr);
131e8d2b73aSMark Adams     nip = (cEnd - cStart)*Nq;
132e0eea495SMark     ierr = DMGetDS(plex, &prob);CHKERRQ(ierr);
133e0eea495SMark     ierr = PetscDSGetNumFields(prob, &Nf);CHKERRQ(ierr);
134e0eea495SMark     ierr = PetscDSGetDimensions(prob, &Nbf);CHKERRQ(ierr); Nb = Nbf[0];
135e0eea495SMark     if (Nq != Nb) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Nq != Nb. %D  %D",Nq,Nb);
13652cdd6eaSMark     if (LANDAU_DIM != dim) SETERRQ2(PETSC_COMM_WORLD, PETSC_ERR_PLIB, "dim %D != LANDAU_DIM %d",dim,LANDAU_DIM);
137e0eea495SMark     ierr = PetscDSGetTabulation(prob, &Tf);CHKERRQ(ierr);
138e8d2b73aSMark Adams     BB   = Tf[0]->T[0]; DD = Tf[0]->T[1];
139e8d2b73aSMark Adams     ierr = PetscKokkosInitializeCheck();CHKERRQ(ierr);
140e8d2b73aSMark Adams     {
141e8d2b73aSMark Adams       const Kokkos::View<PetscReal*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_alpha (nu_alpha, Nf);
142e8d2b73aSMark Adams       auto alpha = new Kokkos::View<PetscReal*, Kokkos::LayoutLeft> ("alpha", Nf);
143e8d2b73aSMark Adams       SData_d->alpha = static_cast<void*>(alpha);
144e8d2b73aSMark Adams       const Kokkos::View<PetscReal*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_beta (nu_beta, Nf);
145e8d2b73aSMark Adams       auto beta = new Kokkos::View<PetscReal*, Kokkos::LayoutLeft> ("beta", Nf);
146e8d2b73aSMark Adams       SData_d->beta = static_cast<void*>(beta);
147e8d2b73aSMark Adams       const Kokkos::View<PetscReal*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_invMass (a_invMass,Nf);
148e8d2b73aSMark Adams       auto invMass = new Kokkos::View<PetscReal*, Kokkos::LayoutLeft> ("invMass", Nf);
149e8d2b73aSMark Adams       SData_d->invMass = static_cast<void*>(invMass);
150e8d2b73aSMark Adams       const Kokkos::View<PetscReal*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_BB (BB,Nq*Nb);
151e8d2b73aSMark Adams       auto B = new Kokkos::View<PetscReal*, Kokkos::LayoutLeft> ("B", Nq*Nb);
152e8d2b73aSMark Adams       SData_d->B = static_cast<void*>(B);
153e8d2b73aSMark Adams       const Kokkos::View<PetscReal*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_DD (DD,Nq*Nb*dim);
154e8d2b73aSMark Adams       auto D = new Kokkos::View<PetscReal*, Kokkos::LayoutLeft> ("D", Nq*Nb*dim);
155e8d2b73aSMark Adams       SData_d->D = static_cast<void*>(D);
156e8d2b73aSMark Adams       const Kokkos::View<PetscReal*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_mass_w (a_mass_w, nip);
157e8d2b73aSMark Adams       auto mass_w = new Kokkos::View<PetscReal*, Kokkos::LayoutLeft> ("mass_w", nip);
158e8d2b73aSMark Adams       SData_d->mass_w = static_cast<void*>(mass_w);
159e8d2b73aSMark Adams       const Kokkos::View<PetscReal*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_invJ (a_invJ, nip*dim*dim);
160e8d2b73aSMark Adams       auto invJ = new Kokkos::View<PetscReal*, Kokkos::LayoutLeft> ("invJ", nip*dim*dim);
161e8d2b73aSMark Adams       SData_d->invJ = static_cast<void*>(invJ);
162e8d2b73aSMark Adams       const Kokkos::View<PetscReal*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_x (a_x, nip);
163e8d2b73aSMark Adams       auto x = new Kokkos::View<PetscReal*, Kokkos::LayoutLeft> ("x", nip);
164e8d2b73aSMark Adams       SData_d->x = static_cast<void*>(x);
165e8d2b73aSMark Adams       const Kokkos::View<PetscReal*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_y (a_y, nip);
166e8d2b73aSMark Adams       auto y = new Kokkos::View<PetscReal*, Kokkos::LayoutLeft> ("y", nip);
167e8d2b73aSMark Adams       SData_d->y = static_cast<void*>(y);
168e8d2b73aSMark Adams       const Kokkos::View<PetscReal*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_w (a_w, nip);
169e8d2b73aSMark Adams       auto w = new Kokkos::View<PetscReal*, Kokkos::LayoutLeft> ("w", nip);
170e8d2b73aSMark Adams       SData_d->w = static_cast<void*>(w);
171e8d2b73aSMark Adams       const Kokkos::View<PetscReal*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_z (a_z , dim==3 ? nip : 0);
172e8d2b73aSMark Adams       auto z = new Kokkos::View<PetscReal*, Kokkos::LayoutLeft> ("z", dim==3 ? nip : 0);
173e8d2b73aSMark Adams       SData_d->z = static_cast<void*>(z);
174e8d2b73aSMark Adams 
175e8d2b73aSMark Adams       Kokkos::deep_copy (*mass_w, h_mass_w);
176e8d2b73aSMark Adams       Kokkos::deep_copy (*alpha, h_alpha);
177e8d2b73aSMark Adams       Kokkos::deep_copy (*beta, h_beta);
178e8d2b73aSMark Adams       Kokkos::deep_copy (*invMass, h_invMass);
179e8d2b73aSMark Adams       Kokkos::deep_copy (*B, h_BB);
180e8d2b73aSMark Adams       Kokkos::deep_copy (*D, h_DD);
181e8d2b73aSMark Adams       Kokkos::deep_copy (*invJ, h_invJ);
182e8d2b73aSMark Adams       Kokkos::deep_copy (*x, h_x);
183e8d2b73aSMark Adams       Kokkos::deep_copy (*y, h_y);
184e8d2b73aSMark Adams       Kokkos::deep_copy (*z, h_z);
185e8d2b73aSMark Adams       Kokkos::deep_copy (*w, h_w);
186e8d2b73aSMark Adams 
187e8d2b73aSMark Adams       auto Eq_m = new Kokkos::View<PetscReal*, Kokkos::LayoutLeft> ("Eq_m",Nf);
188e8d2b73aSMark Adams       SData_d->Eq_m = static_cast<void*>(Eq_m);
189e8d2b73aSMark Adams       auto IPf = new Kokkos::View<PetscScalar*, Kokkos::LayoutLeft> ("IPf",nip*Nf); // Nq==Nb
190e8d2b73aSMark Adams       SData_d->IPf = static_cast<void*>(IPf);
191e8d2b73aSMark Adams     }
192e8d2b73aSMark Adams     PetscFunctionReturn(0);
193e8d2b73aSMark Adams   }
194e8d2b73aSMark Adams 
195e8d2b73aSMark Adams   PetscErrorCode LandauKokkosStaticDataClear(LandauGeomData *SData_d)
196e8d2b73aSMark Adams   {
197e8d2b73aSMark Adams     PetscFunctionBegin;
198e8d2b73aSMark Adams     if (SData_d->alpha) {
199e8d2b73aSMark Adams       auto alpha = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->alpha);
200e8d2b73aSMark Adams       delete alpha;
201e8d2b73aSMark Adams       auto beta = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->beta);
202e8d2b73aSMark Adams       delete beta;
203e8d2b73aSMark Adams       auto invMass = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->invMass);
204e8d2b73aSMark Adams       delete invMass;
205e8d2b73aSMark Adams       auto B = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->B);
206e8d2b73aSMark Adams       delete B;
207e8d2b73aSMark Adams       auto D = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->D);
208e8d2b73aSMark Adams       delete D;
209e8d2b73aSMark Adams       auto mass_w = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->mass_w);
210e8d2b73aSMark Adams       delete mass_w;
211e8d2b73aSMark Adams       auto invJ = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->invJ);
212e8d2b73aSMark Adams       delete invJ;
213e8d2b73aSMark Adams       auto x = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->x);
214e8d2b73aSMark Adams       delete x;
215e8d2b73aSMark Adams       auto y = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->y);
216e8d2b73aSMark Adams       delete y;
217e8d2b73aSMark Adams       auto z = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->z);
218e8d2b73aSMark Adams       delete z;
219e8d2b73aSMark Adams       auto w = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->w);
220e8d2b73aSMark Adams       delete w;
221e8d2b73aSMark Adams       auto Eq_m = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->Eq_m);
222e8d2b73aSMark Adams       delete Eq_m;
223e8d2b73aSMark Adams       auto IPf = static_cast<Kokkos::View<PetscScalar*, Kokkos::LayoutLeft>*>(SData_d->IPf);
224e8d2b73aSMark Adams       delete IPf;
225e8d2b73aSMark Adams     }
226e8d2b73aSMark Adams     PetscFunctionReturn(0);
227e8d2b73aSMark Adams   }
228e8d2b73aSMark Adams 
229e8d2b73aSMark Adams   PetscErrorCode LandauKokkosJacobian(DM plex, const PetscInt Nq, PetscReal a_Eq_m[], PetscScalar a_IPf[], LandauGeomData *SData_d, const PetscInt num_sub_blocks, PetscReal shift,
230e8d2b73aSMark Adams                                       const PetscLogEvent events[], Mat JacP)
231e8d2b73aSMark Adams   {
232e8d2b73aSMark Adams     using scr_mem_t = Kokkos::DefaultExecutionSpace::scratch_memory_space;
233e8d2b73aSMark Adams     using g2_scr_t = Kokkos::View<PetscReal***, Kokkos::LayoutRight, scr_mem_t>;
234e8d2b73aSMark Adams     using g3_scr_t = Kokkos::View<PetscReal****, Kokkos::LayoutRight, scr_mem_t>;
235e8d2b73aSMark Adams     PetscErrorCode    ierr;
236e8d2b73aSMark Adams     PetscInt          *Nbf,Nb,cStart,cEnd,Nf,dim,numCells,totDim,global_elem_mat_sz,nip;
237e8d2b73aSMark Adams     PetscDS           prob;
238e8d2b73aSMark Adams     LandauCtx         *ctx;
239e8d2b73aSMark Adams     PetscReal         *d_Eq_m=NULL;
240e8d2b73aSMark Adams     PetscScalar       *d_IPf=NULL;
241e8d2b73aSMark Adams     P4estVertexMaps   *d_maps=NULL;
242e8d2b73aSMark Adams     PetscSplitCSRDataStructure *d_mat=NULL;
243*bd08a171SMark Adams     const int         conc = Kokkos::DefaultExecutionSpace().concurrency(), openmp = !!(conc < 1000), team_size = (openmp==0) ? Nq : 1;
244*bd08a171SMark Adams     int               scr_bytes;
245e8d2b73aSMark Adams     auto              d_alpha_k = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->alpha); //static data
246e8d2b73aSMark Adams     const PetscReal   *d_alpha = d_alpha_k->data();
247e8d2b73aSMark Adams     auto              d_beta_k = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->beta);
248e8d2b73aSMark Adams     const PetscReal   *d_beta = d_beta_k->data();
249e8d2b73aSMark Adams     auto              d_invMass_k = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->invMass);
250e8d2b73aSMark Adams     const PetscReal   *d_invMass = d_invMass_k->data();
251e8d2b73aSMark Adams     auto              d_B_k = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->B);
252e8d2b73aSMark Adams     const PetscReal   *d_BB = d_B_k->data();
253e8d2b73aSMark Adams     auto              d_D_k = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->D);
254e8d2b73aSMark Adams     const PetscReal   *d_DD = d_D_k->data();
255e8d2b73aSMark Adams     auto              d_mass_w_k = *static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->mass_w);
256e8d2b73aSMark Adams     auto              d_invJ_k = *static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->invJ); // use Kokkos vector in kernels
257e8d2b73aSMark Adams     auto              d_x_k = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->x); //static data
258e8d2b73aSMark Adams     const PetscReal   *d_x = d_x_k->data();
259e8d2b73aSMark Adams     auto              d_y_k = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->y); //static data
260e8d2b73aSMark Adams     const PetscReal   *d_y = d_y_k->data();
261e8d2b73aSMark Adams     auto              d_z_k = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->z); //static data
262e8d2b73aSMark Adams     const PetscReal   *d_z = d_z_k->data();
263e8d2b73aSMark Adams     auto              d_w_k = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->w); //static data
264e8d2b73aSMark Adams     const PetscReal   *d_w = d_w_k->data();
265e8d2b73aSMark Adams     // dynamic data pointers
266e8d2b73aSMark Adams     auto              d_Eq_m_k = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->Eq_m); //static data
267e8d2b73aSMark Adams     auto              d_IPf_k  = static_cast<Kokkos::View<PetscScalar*, Kokkos::LayoutLeft>*>(SData_d->IPf); //static data
268e8d2b73aSMark Adams 
269e8d2b73aSMark Adams     PetscFunctionBegin;
270e8d2b73aSMark Adams     ierr = PetscLogEventBegin(events[3],0,0,0,0);CHKERRQ(ierr);
271e8d2b73aSMark Adams     ierr = DMGetApplicationContext(plex, &ctx);CHKERRQ(ierr);
272e8d2b73aSMark Adams     if (!ctx) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_PLIB, "no context");
273e8d2b73aSMark Adams     ierr = DMGetDimension(plex, &dim);CHKERRQ(ierr);
274e8d2b73aSMark Adams     ierr = DMPlexGetHeightStratum(plex,0,&cStart,&cEnd);CHKERRQ(ierr);
275e8d2b73aSMark Adams     numCells = cEnd - cStart;
276e8d2b73aSMark Adams     nip = numCells*Nq;
277e8d2b73aSMark Adams     ierr = DMGetDS(plex, &prob);CHKERRQ(ierr);
278e8d2b73aSMark Adams     ierr = PetscDSGetNumFields(prob, &Nf);CHKERRQ(ierr);
279e8d2b73aSMark Adams     ierr = PetscDSGetDimensions(prob, &Nbf);CHKERRQ(ierr); Nb = Nbf[0];
280e8d2b73aSMark Adams     if (Nq != Nb) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_PLIB, "Nq != Nb. %D  %D",Nq,Nb);
281e8d2b73aSMark Adams     if (LANDAU_DIM != dim) SETERRQ2(PETSC_COMM_WORLD, PETSC_ERR_PLIB, "dim %D != LANDAU_DIM %d",dim,LANDAU_DIM);
282e8d2b73aSMark Adams     scr_bytes = 2*(g2_scr_t::shmem_size(dim,Nf,Nq) + g3_scr_t::shmem_size(dim,dim,Nf,Nq));
283e8d2b73aSMark Adams     ierr = PetscDSGetTotalDimension(prob, &totDim);CHKERRQ(ierr);
284a587d139SMark     if (ctx->gpu_assembly) {
285a587d139SMark       PetscContainer container;
286a587d139SMark       ierr = PetscObjectQuery((PetscObject) JacP, "assembly_maps", (PetscObject *) &container);CHKERRQ(ierr);
287a587d139SMark       if (container) { // not here first call
288a587d139SMark #if defined(PETSC_HAVE_KOKKOS_KERNELS)
289a587d139SMark         P4estVertexMaps   *h_maps=NULL;
290a587d139SMark         ierr = PetscContainerGetPointer(container, (void **) &h_maps);CHKERRQ(ierr);
291a587d139SMark         if (h_maps->data) {
292a587d139SMark           d_maps = h_maps->data;
293a587d139SMark         } else {
294a587d139SMark           SETERRQ(PETSC_COMM_SELF, PETSC_ERR_PLIB, "GPU assembly but no metadata in container");
295a587d139SMark         }
296a587d139SMark         // this does the setup the first time called
297a587d139SMark         ierr = MatKokkosGetDeviceMatWrite(JacP,&d_mat);CHKERRQ(ierr);
298a587d139SMark         global_elem_mat_sz = 0;
299a587d139SMark #else
300a587d139SMark         SETERRQ(PETSC_COMM_SELF, PETSC_ERR_PLIB, "GPU assembly w/o kokkos kernels -- should not be here");
301a587d139SMark #endif
302a587d139SMark       } else { // kernel output - first call assembled on device
303a587d139SMark         global_elem_mat_sz = numCells;
304a587d139SMark       }
305a587d139SMark     } else {
306a587d139SMark       global_elem_mat_sz = numCells; // no device assembly
307a587d139SMark     }
30852cdd6eaSMark     ierr = PetscKokkosInitializeCheck();CHKERRQ(ierr);
309e0eea495SMark     ierr = PetscLogEventEnd(events[3],0,0,0,0);CHKERRQ(ierr);
310e8d2b73aSMark Adams     {
311*bd08a171SMark Adams #if defined(LANDAU_LAYOUT_LEFT)
312*bd08a171SMark Adams       Kokkos::View<PetscReal***, Kokkos::LayoutLeft >                               d_fdf_k("df", dim+1, Nf, a_IPf ? nip : 0);
313*bd08a171SMark Adams #else
314*bd08a171SMark Adams       Kokkos::View<PetscReal***, Kokkos::LayoutRight >                              d_fdf_k("df", dim+1, Nf, a_IPf ? nip : 0);
315*bd08a171SMark Adams #endif
316e8d2b73aSMark Adams       const Kokkos::View<PetscScalar*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> >h_IPf_k (a_IPf, a_IPf ? nip*Nf : 0);
317e8d2b73aSMark Adams       const Kokkos::View<PetscReal*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> >  h_Eq_m_k (a_Eq_m, a_IPf ? Nf : 0);
318e8d2b73aSMark Adams       Kokkos::View<PetscScalar**, Kokkos::LayoutRight>                                                                 d_elem_mats("element matrices", global_elem_mat_sz, totDim*totDim);
319e8d2b73aSMark Adams       // copy dynamic data to device
320e8d2b73aSMark Adams       if (a_IPf) {
321*bd08a171SMark Adams         static int cc=0;
322e8d2b73aSMark Adams         ierr = PetscLogEventBegin(events[1],0,0,0,0);CHKERRQ(ierr);
323e8d2b73aSMark Adams         Kokkos::deep_copy (*d_IPf_k, h_IPf_k);
324e8d2b73aSMark Adams         Kokkos::deep_copy (*d_Eq_m_k, h_Eq_m_k);
325e8d2b73aSMark Adams         d_Eq_m = d_Eq_m_k->data();
326e8d2b73aSMark Adams         d_IPf  = d_IPf_k->data();
327e8d2b73aSMark Adams         ierr = PetscLogEventEnd(events[1],0,0,0,0);CHKERRQ(ierr);
328e0eea495SMark #define KOKKOS_SHARED_LEVEL 1
329*bd08a171SMark Adams         if (cc++ == 0) {
330*bd08a171SMark Adams           ierr = PetscInfo4(plex, "shared memory size: %d bytes in level %d conc=%D team size=%D\n",scr_bytes,KOKKOS_SHARED_LEVEL,conc,team_size);CHKERRQ(ierr);
331*bd08a171SMark Adams         }
332a587d139SMark         // get f and df
333930e68a5SMark Adams         ierr = PetscLogEventBegin(events[8],0,0,0,0);CHKERRQ(ierr);
33490d163c9SMark Adams         ierr = PetscLogGpuTimeBegin();CHKERRQ(ierr);
335*bd08a171SMark Adams         Kokkos::parallel_for("f, df", Kokkos::TeamPolicy<>(numCells, team_size, /* Kokkos::AUTO */ 16), KOKKOS_LAMBDA (const team_member team) {
336a587d139SMark             const PetscInt  myelem = team.league_rank();
337a587d139SMark             // un pack IPData
338e8d2b73aSMark Adams             PetscScalar *coef = &d_IPf[myelem*Nb*Nf];
339a587d139SMark             Kokkos::parallel_for(Kokkos::TeamThreadRange(team,0,Nq), [=] (int myQi) {
340a587d139SMark                 const PetscInt          ipidx = myQi + myelem * Nq;
341e8d2b73aSMark Adams                 const PetscReal *const  invJj = &d_invJ_k(ipidx*dim*dim);
342a587d139SMark                 const PetscReal         *Bq = &d_BB[myQi*Nb], *Dq = &d_DD[myQi*Nb*dim];
343a587d139SMark                 Kokkos::parallel_for(Kokkos::ThreadVectorRange(team,0,(int)Nf), [=] (int f) {
344a587d139SMark                     PetscInt     b, e, d;
345e8d2b73aSMark Adams                     PetscReal  refSpaceDer[LANDAU_DIM];
346*bd08a171SMark Adams                     d_fdf_k(0,f,ipidx) = 0.0;
347a587d139SMark                     for (d = 0; d < LANDAU_DIM; ++d) refSpaceDer[d] = 0.0;
348a587d139SMark                     for (b = 0; b < Nb; ++b) {
349a587d139SMark                       const PetscInt    cidx = b;
350*bd08a171SMark Adams                       d_fdf_k(0,f,ipidx) += Bq[cidx]*coef[f*Nb+cidx];
351a587d139SMark                       for (d = 0; d < dim; ++d) refSpaceDer[d] += Dq[cidx*dim+d]*coef[f*Nb+cidx];
352a587d139SMark                     }
353a587d139SMark                     for (d = 0; d < dim; ++d) {
354*bd08a171SMark Adams                       for (e = 0, d_fdf_k(d+1,f,ipidx) = 0.0; e < dim; ++e) {
355*bd08a171SMark Adams                         d_fdf_k(d+1,f,ipidx) += invJj[e*dim+d]*refSpaceDer[e];
356a587d139SMark                       }
357a587d139SMark                     }
358a587d139SMark                   }); // Nf
359a587d139SMark               }); // Nq
360a587d139SMark           }); // elems
361a587d139SMark         Kokkos::fence();
36290d163c9SMark Adams #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP)
36390d163c9SMark Adams         ierr = PetscLogGpuFlops(nip*(PetscLogDouble)(2*Nb*(1+dim)));CHKERRQ(ierr);
36490d163c9SMark Adams #else
36590d163c9SMark Adams         ierr = PetscLogFlops(nip*(PetscLogDouble)(2*Nb*(1+dim)));CHKERRQ(ierr);
36690d163c9SMark Adams #endif
36790d163c9SMark Adams         ierr = PetscLogGpuTimeEnd();CHKERRQ(ierr);
368930e68a5SMark Adams         ierr = PetscLogEventEnd(events[8],0,0,0,0);CHKERRQ(ierr);
369930e68a5SMark Adams       }
370a587d139SMark       ierr = PetscLogEventBegin(events[4],0,0,0,0);CHKERRQ(ierr);
371930e68a5SMark Adams       ierr = PetscLogGpuTimeBegin();CHKERRQ(ierr);
37290d163c9SMark Adams #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP)
373e8d2b73aSMark Adams       ierr = PetscLogGpuFlops(nip*(PetscLogDouble)(!a_IPf ? (nip*(11*Nf+ 4*dim*dim) + 6*Nf*dim*dim*dim + 10*Nf*dim*dim + 4*Nf*dim + Nb*Nf*Nb*Nq*dim*dim*5) : Nb*Nf*Nb*Nq*4));CHKERRQ(ierr);
37490d163c9SMark Adams       if (ctx->deviceType == LANDAU_CPU) PetscInfo(plex, "Warning: Landau selected CPU but no support for Kokkos using CPU\n");
37590d163c9SMark Adams #else
376e8d2b73aSMark Adams       ierr = PetscLogFlops(nip*(PetscLogDouble)(!a_IPf ? (nip*(11*Nf+ 4*dim*dim) + 6*Nf*dim*dim*dim + 10*Nf*dim*dim + 4*Nf*dim + Nb*Nf*Nb*Nq*dim*dim*5) : Nb*Nf*Nb*Nq*4));CHKERRQ(ierr);
37790d163c9SMark Adams #endif
378*bd08a171SMark Adams       Kokkos::parallel_for("Landau elements", Kokkos::TeamPolicy<>(numCells, team_size, /*Kokkos::AUTO*/ 16).set_scratch_size(KOKKOS_SHARED_LEVEL, Kokkos::PerTeam(scr_bytes)), KOKKOS_LAMBDA (const team_member team) {
379e0eea495SMark           const PetscInt  myelem = team.league_rank();
380930e68a5SMark Adams           g2_scr_t        g2(team.team_scratch(KOKKOS_SHARED_LEVEL),dim,Nf,Nq); // we don't use these for mass matrix
38152cdd6eaSMark           g3_scr_t        g3(team.team_scratch(KOKKOS_SHARED_LEVEL),dim,dim,Nf,Nq);
382e8d2b73aSMark Adams           if (d_IPf) {
38352cdd6eaSMark             g2_scr_t        gg2(team.team_scratch(KOKKOS_SHARED_LEVEL),dim,Nf,Nq);
38452cdd6eaSMark             g3_scr_t        gg3(team.team_scratch(KOKKOS_SHARED_LEVEL),dim,dim,Nf,Nq);
385e0eea495SMark             // get g2[] & g3[]
386e0eea495SMark             Kokkos::parallel_for(Kokkos::TeamThreadRange(team,0,Nq), [=] (int myQi) {
387e0eea495SMark                 using Kokkos::parallel_reduce;
388e0eea495SMark                 const PetscInt                    jpidx = myQi + myelem * Nq;
389e8d2b73aSMark Adams                 const PetscReal* const            invJj = &d_invJ_k(jpidx*dim*dim);
390e8d2b73aSMark Adams                 const PetscReal                   vj[3] = {d_x[jpidx], d_y[jpidx], d_z ? d_z[jpidx] : 0}, wj = d_w[jpidx];
39152cdd6eaSMark                 landau_inner_red::TensorValueType gg_temp; // reduce on part of gg2 and g33 for IP jpidx
392930e68a5SMark Adams                 Kokkos::parallel_reduce(Kokkos::ThreadVectorRange (team, (int)nip), [=] (const int& ipidx, landau_inner_red::TensorValueType & ggg) {
393e8d2b73aSMark Adams                     const PetscReal wi = d_w[ipidx], x = d_x[ipidx], y = d_y[ipidx];
39452cdd6eaSMark                     PetscReal       temp1[3] = {0, 0, 0}, temp2 = 0;
39552cdd6eaSMark                     PetscInt        fieldA,d2,d3;
396e0eea495SMark #if LANDAU_DIM==2
397e0eea495SMark                     PetscReal Ud[2][2], Uk[2][2];
39852cdd6eaSMark                     LandauTensor2D(vj, x, y, Ud, Uk, (ipidx==jpidx) ? 0. : 1.);
39952cdd6eaSMark #else
400e8d2b73aSMark Adams                     PetscReal U[3][3], z = d_z[ipidx];
40152cdd6eaSMark                     LandauTensor3D(vj, x, y, z, U, (ipidx==jpidx) ? 0. : 1.);
40252cdd6eaSMark #endif
403e0eea495SMark                     for (fieldA = 0; fieldA < Nf; ++fieldA) {
404*bd08a171SMark Adams                       temp1[0] += d_fdf_k(1,fieldA,ipidx)*d_beta[fieldA]*d_invMass[fieldA];
405*bd08a171SMark Adams                       temp1[1] += d_fdf_k(2,fieldA,ipidx)*d_beta[fieldA]*d_invMass[fieldA];
40652cdd6eaSMark #if LANDAU_DIM==3
407*bd08a171SMark Adams                       temp1[2] += d_fdf_k(3,fieldA,ipidx)*d_beta[fieldA]*d_invMass[fieldA];
40852cdd6eaSMark #endif
409*bd08a171SMark Adams                       temp2    += d_fdf_k(0,fieldA,ipidx)*d_beta[fieldA];
41052cdd6eaSMark                     }
41152cdd6eaSMark                     temp1[0] *= wi;
41252cdd6eaSMark                     temp1[1] *= wi;
41352cdd6eaSMark #if LANDAU_DIM==3
41452cdd6eaSMark                     temp1[2] *= wi;
41552cdd6eaSMark #endif
41652cdd6eaSMark                     temp2    *= wi;
41752cdd6eaSMark #if LANDAU_DIM==2
41852cdd6eaSMark                     for (d2 = 0; d2 < 2; d2++) {
419e0eea495SMark                       for (d3 = 0; d3 < 2; ++d3) {
420e0eea495SMark                         /* K = U * grad(f): g2=e: i,A */
42152cdd6eaSMark                         ggg.gg2[d2] += Uk[d2][d3]*temp1[d3];
422e0eea495SMark                         /* D = -U * (I \kron (fx)): g3=f: i,j,A */
42352cdd6eaSMark                         ggg.gg3[d2][d3] += Ud[d2][d3]*temp2;
424e0eea495SMark                       }
425e0eea495SMark                     }
426e0eea495SMark #else
427e0eea495SMark                     for (d2 = 0; d2 < 3; ++d2) {
428e0eea495SMark                       for (d3 = 0; d3 < 3; ++d3) {
429e0eea495SMark                         /* K = U * grad(f): g2 = e: i,A */
43052cdd6eaSMark                         ggg.gg2[d2] += U[d2][d3]*temp1[d3];
431e0eea495SMark                         /* D = -U * (I \kron (fx)): g3 = f: i,j,A */
43252cdd6eaSMark                         ggg.gg3[d2][d3] += U[d2][d3]*temp2;
433e0eea495SMark                       }
434e0eea495SMark                     }
435e0eea495SMark #endif
43652cdd6eaSMark                   }, Kokkos::Sum<landau_inner_red::TensorValueType>(gg_temp));
43752cdd6eaSMark                 // if (myelem==0) printf("\t:%d.%d) temp gg3=%e %e %e %e\n",myelem,myQi,gg_temp.gg3[0][0],gg_temp.gg3[1][0],gg_temp.gg3[0][1],gg_temp.gg3[1][1]);
43852cdd6eaSMark                 // add alpha and put in gg2/3
43937e8a436SMark Adams                 Kokkos::parallel_for(Kokkos::ThreadVectorRange (team, (int)Nf), [&] (const int& fieldA) {
44052cdd6eaSMark                     PetscInt d2,d3;
44152cdd6eaSMark                     for (d2 = 0; d2 < dim; d2++) {
44252cdd6eaSMark                       gg2(d2,fieldA,myQi) = gg_temp.gg2[d2]*d_alpha[fieldA];
443e8d2b73aSMark Adams                       //if (myelem==0 && fieldA==1) printf("\t\t:%d.%d) gg2[%d]=%e = %e %e\n",myelem,myQi,d2,gg2(d2,fieldA,myQi),gg_temp.gg2[d2],d_alpha[fieldA]);
44452cdd6eaSMark                       //gg2[d2][myQi][fieldA] += gg_temp.gg2[d2]*d_alpha[fieldA];
44552cdd6eaSMark                       for (d3 = 0; d3 < dim; d3++) {
44652cdd6eaSMark                         //gg3[d2][d3][myQi][fieldA] -= gg_temp.gg3[d2][d3]*d_alpha[fieldA]*s_invMass[fieldA];
44752cdd6eaSMark                         gg3(d2,d3,fieldA,myQi) = -gg_temp.gg3[d2][d3]*d_alpha[fieldA]*d_invMass[fieldA];
44852cdd6eaSMark                         //if (myelem==0 && fieldA==1) printf("\t\t\t:%d.%d) gg3[%d][%d]=%e\n",myelem,myQi,d2,d3,gg3(d2,d3,fieldA,myQi));
44952cdd6eaSMark                       }
45052cdd6eaSMark                     }
451e0eea495SMark                   });
45252cdd6eaSMark                 /* add electric field term once per IP */
45352cdd6eaSMark                 Kokkos::parallel_for(Kokkos::ThreadVectorRange (team, (int)Nf), [&] (const int& fieldA) {
45452cdd6eaSMark                     //gg.gg2[fieldA][dim-1] += d_Eq_m[fieldA];
45552cdd6eaSMark                     gg2(dim-1,fieldA,myQi) += d_Eq_m[fieldA];
45652cdd6eaSMark                   });
45752cdd6eaSMark                 // Kokkos::single(Kokkos::PerThread(team), [&]() {
45837e8a436SMark Adams                 Kokkos::parallel_for(Kokkos::ThreadVectorRange (team, (int)Nf), [=] (const int& fieldA) {
459e0eea495SMark                     int d,d2,d3,dp;
460e0eea495SMark                     //printf("%d %d %d gg2[][1]=%18.10e\n",myelem,myQi,fieldA,gg.gg2[fieldA][dim-1]);
461e0eea495SMark                     /* Jacobian transform - g2, g3 - per thread (2D) */
462e0eea495SMark                     for (d = 0; d < dim; ++d) {
46352cdd6eaSMark                       g2(d,fieldA,myQi) = 0;
464e0eea495SMark                       for (d2 = 0; d2 < dim; ++d2) {
46552cdd6eaSMark                         g2(d,fieldA,myQi) += invJj[d*dim+d2]*gg2(d2,fieldA,myQi);
46652cdd6eaSMark                         //if (myelem==0 && myQi==0) printf("\t:g2[%d][%d][%d]=%e. %e %e\n",(int)myQi,(int)fieldA,(int)d,g2(fieldA,myQi,d),invJj[d*dim+d2],gg.gg2[fieldA][d2]);
46752cdd6eaSMark                         g3(d,d2,fieldA,myQi) = 0;
468e0eea495SMark                         for (d3 = 0; d3 < dim; ++d3) {
469e0eea495SMark                           for (dp = 0; dp < dim; ++dp) {
47052cdd6eaSMark                             g3(d,d2,fieldA,myQi) += invJj[d*dim + d3]*gg3(d3,dp,fieldA,myQi)*invJj[d2*dim + dp];
471e0eea495SMark                             //printf("\t%d %d %d %d %d %d %d g3=%g wj=%g g3 = %g * %g * %g\n",myelem,myQi,fieldA,d,d2,d3,dp,g3(fieldA,myQi,d,d2),wj,invJj[d*dim + d3],gg.gg3[fieldA][d3][dp],invJj[d2*dim + dp]);
472e0eea495SMark                           }
473e0eea495SMark                         }
47452cdd6eaSMark                         g3(d,d2,fieldA,myQi) *= wj;
475e0eea495SMark                       }
47652cdd6eaSMark                       g2(d,fieldA,myQi) *= wj;
477e0eea495SMark                     }
478e0eea495SMark                   });
47952cdd6eaSMark               }); // Nq
480e0eea495SMark             team.team_barrier();
481930e68a5SMark Adams           } // Jacobian
482930e68a5SMark Adams           /* assemble */
483e0eea495SMark           //Kokkos::single(Kokkos::PerTeam(team), [&]() {
484e0eea495SMark           Kokkos::parallel_for(Kokkos::TeamThreadRange(team,0,Nb), [=] (int blk_i) {
48537e8a436SMark Adams               Kokkos::parallel_for(Kokkos::ThreadVectorRange(team,0,(int)Nf), [=] (int fieldA) {
486e0eea495SMark                   int blk_j,qj,d,d2;
487e0eea495SMark                   const PetscInt i = fieldA*Nb + blk_i; /* Element matrix row */
488e0eea495SMark                   for (blk_j = 0; blk_j < Nb; ++blk_j) {
489e0eea495SMark                     const PetscInt j    = fieldA*Nb + blk_j; /* Element matrix column */
490e0eea495SMark                     const PetscInt fOff = i*totDim + j;
491a587d139SMark                     PetscScalar t = global_elem_mat_sz ? d_elem_mats(myelem,fOff) : 0;
492e0eea495SMark                     for (qj = 0 ; qj < Nq ; qj++) { // look at others integration points
493e0eea495SMark                       const PetscReal *BJq = &d_BB[qj*Nb], *DIq = &d_DD[qj*Nb*dim];
494e8d2b73aSMark Adams                       if (d_IPf) {
495e0eea495SMark                         for (d = 0; d < dim; ++d) {
496a587d139SMark                           t += DIq[blk_i*dim+d]*g2(d,fieldA,qj)*BJq[blk_j];
497e0eea495SMark                           for (d2 = 0; d2 < dim; ++d2) {
498a587d139SMark                             t += DIq[blk_i*dim + d]*g3(d,d2,fieldA,qj)*DIq[blk_j*dim + d2];
499e0eea495SMark                           }
500e0eea495SMark                         }
501930e68a5SMark Adams                       } else {
502930e68a5SMark Adams                         const PetscInt jpidx = qj + myelem * Nq;
503e8d2b73aSMark Adams                         t += BJq[blk_i] * d_mass_w_k(jpidx) * shift * BJq[blk_j];
504930e68a5SMark Adams                       }
505e0eea495SMark                     }
506a587d139SMark                     if (global_elem_mat_sz) d_elem_mats(myelem,fOff) = t; // can set this because local element matrix[fOff]
507a587d139SMark                     else {
508a587d139SMark                       PetscErrorCode         ierr = 0;
5098f7e8f9dSMark Adams                       PetscScalar            vals[LANDAU_MAX_Q_FACE*LANDAU_MAX_Q_FACE],row_scale[LANDAU_MAX_Q_FACE],col_scale[LANDAU_MAX_Q_FACE];
5108f7e8f9dSMark Adams                       PetscInt               q,idx,nr,nc,rows0[LANDAU_MAX_Q_FACE],cols0[LANDAU_MAX_Q_FACE],rows[LANDAU_MAX_Q_FACE],cols[LANDAU_MAX_Q_FACE];
511a587d139SMark                       const LandauIdx *const Idxs = &d_maps->gIdx[myelem][fieldA][0];
512a587d139SMark                       idx = Idxs[blk_i];
513a587d139SMark                       if (idx >= 0) {
514a587d139SMark                         nr = 1;
515a587d139SMark                         rows0[0] = idx;
516a587d139SMark                         row_scale[0] = 1.;
517a587d139SMark                       } else {
518a587d139SMark                         idx = -idx - 1;
519a587d139SMark                         nr = d_maps->num_face;
520a587d139SMark                         for (q = 0; q < d_maps->num_face; q++) {
521a587d139SMark                           rows0[q]     = d_maps->c_maps[idx][q].gid;
522a587d139SMark                           row_scale[q] = d_maps->c_maps[idx][q].scale;
523a587d139SMark                         }
524a587d139SMark                       }
525a587d139SMark                       idx = Idxs[blk_j];
526a587d139SMark                       if (idx >= 0) {
527a587d139SMark                         nc = 1;
528a587d139SMark                         cols0[0] = idx;
529a587d139SMark                         col_scale[0] = 1.;
530a587d139SMark                       } else {
531a587d139SMark                         idx = -idx - 1;
532a587d139SMark                         nc = d_maps->num_face;
533a587d139SMark                         for (q = 0; q < d_maps->num_face; q++) {
534a587d139SMark                           cols0[q]     = d_maps->c_maps[idx][q].gid;
535a587d139SMark                           col_scale[q] = d_maps->c_maps[idx][q].scale;
536a587d139SMark                         }
537a587d139SMark                       }
538a587d139SMark                       for (q = 0; q < nr; q++) rows[q] = rows0[q];
539a587d139SMark                       for (q = 0; q < nc; q++) cols[q] = cols0[q];
540a587d139SMark                       for (q = 0; q < nr; q++) {
541a587d139SMark                         for (d = 0; d < nc; d++) {
542a587d139SMark                           vals[q*nc + d] = row_scale[q]*col_scale[d]*t;
543a587d139SMark                         }
544a587d139SMark                       }
545a587d139SMark                       MatSetValuesDevice(d_mat,nr,rows,nc,cols,vals,ADD_VALUES,&ierr);
546a587d139SMark                       if (ierr) return;
547a587d139SMark                     }
548e0eea495SMark                   }
549e0eea495SMark                 });
550e0eea495SMark             });
551e0eea495SMark         });
552930e68a5SMark Adams       ierr = PetscLogGpuTimeEnd();CHKERRQ(ierr);
553e8d2b73aSMark Adams       Kokkos::fence();
554e0eea495SMark       ierr = PetscLogEventEnd(events[4],0,0,0,0);CHKERRQ(ierr);
555a587d139SMark       if (global_elem_mat_sz) {
556e8d2b73aSMark Adams         PetscSection      section, globalSection;
557a587d139SMark         Kokkos::View<PetscScalar**, Kokkos::LayoutRight>::HostMirror h_elem_mats = Kokkos::create_mirror_view(d_elem_mats);
558e0eea495SMark         ierr = PetscLogEventBegin(events[5],0,0,0,0);CHKERRQ(ierr);
559e8d2b73aSMark Adams         ierr = DMGetLocalSection(plex, &section);CHKERRQ(ierr);
560e8d2b73aSMark Adams         ierr = DMGetGlobalSection(plex, &globalSection);CHKERRQ(ierr);
561e0eea495SMark         Kokkos::deep_copy (h_elem_mats, d_elem_mats);
562e0eea495SMark         ierr = PetscLogEventEnd(events[5],0,0,0,0);CHKERRQ(ierr);
563e0eea495SMark         ierr = PetscLogEventBegin(events[6],0,0,0,0);CHKERRQ(ierr);
564e0eea495SMark         PetscInt ej;
565e0eea495SMark         for (ej = cStart ; ej < cEnd; ++ej) {
566e0eea495SMark           const PetscScalar *elMat = &h_elem_mats(ej-cStart,0);
567e0eea495SMark           ierr = DMPlexMatSetClosure(plex, section, globalSection, JacP, ej, elMat, ADD_VALUES);CHKERRQ(ierr);
568e0eea495SMark           if (ej==-1) {
569e0eea495SMark             int d,f;
57052cdd6eaSMark             PetscPrintf(PETSC_COMM_SELF,"Kokkos Element matrix %d/%d\n",1,(int)numCells);
571e0eea495SMark             for (d = 0; d < totDim; ++d){
57252cdd6eaSMark               for (f = 0; f < totDim; ++f) PetscPrintf(PETSC_COMM_SELF," %12.5e",  PetscRealPart(elMat[d*totDim + f]));
57352cdd6eaSMark               PetscPrintf(PETSC_COMM_SELF,"\n");
574e0eea495SMark             }
575e8d2b73aSMark Adams             exit(14);
576e0eea495SMark           }
577e0eea495SMark         }
578e0eea495SMark         ierr = PetscLogEventEnd(events[6],0,0,0,0);CHKERRQ(ierr);
579e0eea495SMark       }
580a587d139SMark     }
581e0eea495SMark     PetscFunctionReturn(0);
582e0eea495SMark   }
583e0eea495SMark } // extern "C"
584