1e0eea495SMark /* 2e0eea495SMark Implements the Kokkos kernel 3e0eea495SMark */ 4e0eea495SMark #include <petscconf.h> 511d22bbfSJunchao Zhang #include <petscvec_kokkos.hpp> 6e0eea495SMark #include <petsc/private/dmpleximpl.h> /*I "petscdmplex.h" I*/ 7a16fd2c9SJacob Faibussowitsch #include <petsc/private/deviceimpl.h> 8e0eea495SMark #include <petsclandau.h> 9e0eea495SMark #include <petscts.h> 10a587d139SMark 11e0eea495SMark #include <Kokkos_Core.hpp> 12e0eea495SMark #include <cstdio> 13e0eea495SMark typedef Kokkos::TeamPolicy<>::member_type team_member; 14e0eea495SMark #include "../land_tensors.h" 15a587d139SMark #include <petscaijdevice.h> 16e0eea495SMark 17*d71ae5a4SJacob Faibussowitsch namespace landau_inner_red 18*d71ae5a4SJacob Faibussowitsch { // namespace helps with name resolution in reduction identity 1952cdd6eaSMark template <class ScalarType> 20e0eea495SMark struct array_type { 2152cdd6eaSMark ScalarType gg2[LANDAU_DIM]; 2252cdd6eaSMark ScalarType gg3[LANDAU_DIM][LANDAU_DIM]; 23e0eea495SMark 24e0eea495SMark KOKKOS_INLINE_FUNCTION // Default constructor - Initialize to 0's 25*d71ae5a4SJacob Faibussowitsch array_type() 26*d71ae5a4SJacob Faibussowitsch { 27e0eea495SMark for (int j = 0; j < LANDAU_DIM; j++) { 2852cdd6eaSMark gg2[j] = 0; 29ad540459SPierre Jolivet for (int k = 0; k < LANDAU_DIM; k++) gg3[j][k] = 0; 30e0eea495SMark } 31e0eea495SMark } 32e0eea495SMark KOKKOS_INLINE_FUNCTION // Copy Constructor 33*d71ae5a4SJacob Faibussowitsch array_type(const array_type &rhs) 34*d71ae5a4SJacob Faibussowitsch { 35e0eea495SMark for (int j = 0; j < LANDAU_DIM; j++) { 3652cdd6eaSMark gg2[j] = rhs.gg2[j]; 37ad540459SPierre Jolivet for (int k = 0; k < LANDAU_DIM; k++) gg3[j][k] = rhs.gg3[j][k]; 38e0eea495SMark } 39e0eea495SMark } 40e0eea495SMark KOKKOS_INLINE_FUNCTION // add operator 419371c9d4SSatish Balay array_type & 42*d71ae5a4SJacob Faibussowitsch operator+=(const array_type &src) 43*d71ae5a4SJacob Faibussowitsch { 44e0eea495SMark for (int j = 0; j < LANDAU_DIM; j++) { 4552cdd6eaSMark gg2[j] += src.gg2[j]; 46ad540459SPierre Jolivet for (int k = 0; k < LANDAU_DIM; k++) gg3[j][k] += src.gg3[j][k]; 47e0eea495SMark } 48e0eea495SMark return *this; 49e0eea495SMark } 50e0eea495SMark KOKKOS_INLINE_FUNCTION // volatile add operator 519371c9d4SSatish Balay void 52*d71ae5a4SJacob Faibussowitsch operator+=(const volatile array_type &src) volatile 53*d71ae5a4SJacob Faibussowitsch { 54e0eea495SMark for (int j = 0; j < LANDAU_DIM; j++) { 5552cdd6eaSMark gg2[j] += src.gg2[j]; 56ad540459SPierre Jolivet for (int k = 0; k < LANDAU_DIM; k++) gg3[j][k] += src.gg3[j][k]; 57e0eea495SMark } 58e0eea495SMark } 59e0eea495SMark }; 6052cdd6eaSMark typedef array_type<PetscReal> TensorValueType; // used to simplify code below 619371c9d4SSatish Balay } // namespace landau_inner_red 62e0eea495SMark 63*d71ae5a4SJacob Faibussowitsch namespace Kokkos 64*d71ae5a4SJacob Faibussowitsch { //reduction identity must be defined in Kokkos namespace 65e0eea495SMark template <> 6652cdd6eaSMark struct reduction_identity<landau_inner_red::TensorValueType> { 679371c9d4SSatish Balay KOKKOS_FORCEINLINE_FUNCTION static landau_inner_red::TensorValueType sum() { return landau_inner_red::TensorValueType(); } 68e0eea495SMark }; 699371c9d4SSatish Balay } // namespace Kokkos 70e0eea495SMark 71e0eea495SMark extern "C" { 72*d71ae5a4SJacob Faibussowitsch PetscErrorCode LandauKokkosCreateMatMaps(P4estVertexMaps maps[], pointInterpolationP4est (*pointMaps)[LANDAU_MAX_Q_FACE], PetscInt Nf[], PetscInt Nq, PetscInt grid) 73*d71ae5a4SJacob Faibussowitsch { 74a587d139SMark P4estVertexMaps h_maps; /* host container */ 758a6f2e61SMark Adams const Kokkos::View<pointInterpolationP4est *[LANDAU_MAX_Q_FACE], Kokkos::LayoutRight, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_points((pointInterpolationP4est *)pointMaps, maps[grid].num_reduced); 768a6f2e61SMark Adams const Kokkos::View<LandauIdx *[LANDAU_MAX_SPECIES][LANDAU_MAX_NQ], Kokkos::LayoutRight, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_gidx((LandauIdx *)maps[grid].gIdx, maps[grid].num_elements); 778a6f2e61SMark Adams Kokkos::View<pointInterpolationP4est *[LANDAU_MAX_Q_FACE], Kokkos::LayoutRight> *d_points = new Kokkos::View<pointInterpolationP4est *[LANDAU_MAX_Q_FACE], Kokkos::LayoutRight>("points", maps[grid].num_reduced); 788a6f2e61SMark Adams Kokkos::View<LandauIdx *[LANDAU_MAX_SPECIES][LANDAU_MAX_NQ], Kokkos::LayoutRight> *d_gidx = new Kokkos::View<LandauIdx *[LANDAU_MAX_SPECIES][LANDAU_MAX_NQ], Kokkos::LayoutRight>("gIdx", maps[grid].num_elements); 79a587d139SMark 80a587d139SMark PetscFunctionBegin; 81a587d139SMark Kokkos::deep_copy(*d_gidx, h_gidx); 82a587d139SMark Kokkos::deep_copy(*d_points, h_points); 838a6f2e61SMark Adams h_maps.num_elements = maps[grid].num_elements; 848a6f2e61SMark Adams h_maps.num_face = maps[grid].num_face; 858a6f2e61SMark Adams h_maps.num_reduced = maps[grid].num_reduced; 868a6f2e61SMark Adams h_maps.deviceType = maps[grid].deviceType; 878a6f2e61SMark Adams h_maps.numgrids = maps[grid].numgrids; 888a6f2e61SMark Adams h_maps.Nf = Nf[grid]; 89a587d139SMark h_maps.c_maps = (pointInterpolationP4est(*)[LANDAU_MAX_Q_FACE])d_points->data(); 908a6f2e61SMark Adams maps[grid].vp1 = (void *)d_points; 91a587d139SMark h_maps.gIdx = (LandauIdx(*)[LANDAU_MAX_SPECIES][LANDAU_MAX_NQ])d_gidx->data(); 928a6f2e61SMark Adams maps[grid].vp2 = (void *)d_gidx; 93a587d139SMark { 94a587d139SMark Kokkos::View<P4estVertexMaps, Kokkos::HostSpace> h_maps_k(&h_maps); 9511d22bbfSJunchao Zhang Kokkos::View<P4estVertexMaps> *d_maps_k = new Kokkos::View<P4estVertexMaps>(Kokkos::create_mirror(Kokkos::DefaultExecutionSpace::memory_space(), h_maps_k)); 96a587d139SMark Kokkos::deep_copy(*d_maps_k, h_maps_k); 978a6f2e61SMark Adams maps[grid].d_self = d_maps_k->data(); 988a6f2e61SMark Adams maps[grid].vp3 = (void *)d_maps_k; 99a587d139SMark } 100a587d139SMark PetscFunctionReturn(0); 101a587d139SMark } 102*d71ae5a4SJacob Faibussowitsch PetscErrorCode LandauKokkosDestroyMatMaps(P4estVertexMaps maps[], PetscInt num_grids) 103*d71ae5a4SJacob Faibussowitsch { 104362febeeSStefano Zampini PetscFunctionBegin; 1058a6f2e61SMark Adams for (PetscInt grid = 0; grid < num_grids; grid++) { 1068a6f2e61SMark Adams auto a = static_cast<Kokkos::View<pointInterpolationP4est *[LANDAU_MAX_Q_FACE], Kokkos::LayoutRight> *>(maps[grid].vp1); 1078a6f2e61SMark Adams auto b = static_cast<Kokkos::View<LandauIdx *[LANDAU_MAX_SPECIES][LANDAU_MAX_NQ], Kokkos::LayoutRight> *>(maps[grid].vp2); 1088a6f2e61SMark Adams auto c = static_cast<Kokkos::View<P4estVertexMaps *> *>(maps[grid].vp3); 1099371c9d4SSatish Balay delete a; 1109371c9d4SSatish Balay delete b; 1119371c9d4SSatish Balay delete c; 1128a6f2e61SMark Adams } 113a587d139SMark PetscFunctionReturn(0); 114a587d139SMark } 115a587d139SMark 116*d71ae5a4SJacob Faibussowitsch PetscErrorCode LandauKokkosStaticDataSet(DM plex, const PetscInt Nq, const PetscInt batch_sz, const PetscInt num_grids, PetscInt a_numCells[], PetscInt a_species_offset[], PetscInt a_mat_offset[], PetscReal a_nu_alpha[], PetscReal a_nu_beta[], PetscReal a_invMass[], PetscReal a_invJ[], PetscReal a_x[], PetscReal a_y[], PetscReal a_z[], PetscReal a_w[], LandauStaticData *SData_d) 117*d71ae5a4SJacob Faibussowitsch { 118e0eea495SMark PetscReal *BB, *DD; 119e8d2b73aSMark Adams PetscTabulation *Tf; 1208a6f2e61SMark Adams PetscInt dim; 1218a6f2e61SMark Adams PetscInt Nb = Nq, ip_offset[LANDAU_MAX_GRIDS + 1], ipf_offset[LANDAU_MAX_GRIDS + 1], elem_offset[LANDAU_MAX_GRIDS + 1], nip, IPf_sz, Nftot; 122e8d2b73aSMark Adams PetscDS prob; 123e0eea495SMark 124e0eea495SMark PetscFunctionBegin; 1259566063dSJacob Faibussowitsch PetscCall(DMGetDimension(plex, &dim)); 1269566063dSJacob Faibussowitsch PetscCall(DMGetDS(plex, &prob)); 12763a3b9bcSJacob Faibussowitsch PetscCheck(LANDAU_DIM == dim, PETSC_COMM_WORLD, PETSC_ERR_PLIB, "dim %" PetscInt_FMT " != LANDAU_DIM %d", dim, LANDAU_DIM); 1289566063dSJacob Faibussowitsch PetscCall(PetscDSGetTabulation(prob, &Tf)); 1299371c9d4SSatish Balay BB = Tf[0]->T[0]; 1309371c9d4SSatish Balay DD = Tf[0]->T[1]; 1318a6f2e61SMark Adams ip_offset[0] = ipf_offset[0] = elem_offset[0] = 0; 1328a6f2e61SMark Adams nip = 0; 1338a6f2e61SMark Adams IPf_sz = 0; 1348a6f2e61SMark Adams for (PetscInt grid = 0; grid < num_grids; grid++) { 1358a6f2e61SMark Adams PetscInt nfloc = a_species_offset[grid + 1] - a_species_offset[grid]; 1368a6f2e61SMark Adams elem_offset[grid + 1] = elem_offset[grid] + a_numCells[grid]; 1378a6f2e61SMark Adams nip += a_numCells[grid] * Nq; 1388a6f2e61SMark Adams ip_offset[grid + 1] = nip; 1398a6f2e61SMark Adams IPf_sz += Nq * nfloc * a_numCells[grid]; 1408a6f2e61SMark Adams ipf_offset[grid + 1] = IPf_sz; 1418a6f2e61SMark Adams } 1428a6f2e61SMark Adams Nftot = a_species_offset[num_grids]; 1439566063dSJacob Faibussowitsch PetscCall(PetscKokkosInitializeCheck()); 144e8d2b73aSMark Adams { 1458a6f2e61SMark Adams const Kokkos::View<PetscReal *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_alpha(a_nu_alpha, Nftot); 1468a6f2e61SMark Adams auto alpha = new Kokkos::View<PetscReal *, Kokkos::LayoutLeft>("alpha", Nftot); 147e8d2b73aSMark Adams SData_d->alpha = static_cast<void *>(alpha); 1488a6f2e61SMark Adams const Kokkos::View<PetscReal *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_beta(a_nu_beta, Nftot); 1498a6f2e61SMark Adams auto beta = new Kokkos::View<PetscReal *, Kokkos::LayoutLeft>("beta", Nftot); 150e8d2b73aSMark Adams SData_d->beta = static_cast<void *>(beta); 1518a6f2e61SMark Adams const Kokkos::View<PetscReal *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_invMass(a_invMass, Nftot); 1528a6f2e61SMark Adams auto invMass = new Kokkos::View<PetscReal *, Kokkos::LayoutLeft>("invMass", Nftot); 153e8d2b73aSMark Adams SData_d->invMass = static_cast<void *>(invMass); 154e8d2b73aSMark Adams const Kokkos::View<PetscReal *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_BB(BB, Nq * Nb); 155e8d2b73aSMark Adams auto B = new Kokkos::View<PetscReal *, Kokkos::LayoutLeft>("B", Nq * Nb); 156e8d2b73aSMark Adams SData_d->B = static_cast<void *>(B); 157e8d2b73aSMark Adams const Kokkos::View<PetscReal *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_DD(DD, Nq * Nb * dim); 158e8d2b73aSMark Adams auto D = new Kokkos::View<PetscReal *, Kokkos::LayoutLeft>("D", Nq * Nb * dim); 159e8d2b73aSMark Adams SData_d->D = static_cast<void *>(D); 160e8d2b73aSMark Adams const Kokkos::View<PetscReal *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_invJ(a_invJ, nip * dim * dim); 161e8d2b73aSMark Adams auto invJ = new Kokkos::View<PetscReal *, Kokkos::LayoutLeft>("invJ", nip * dim * dim); 162e8d2b73aSMark Adams SData_d->invJ = static_cast<void *>(invJ); 163e8d2b73aSMark Adams const Kokkos::View<PetscReal *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_x(a_x, nip); 164e8d2b73aSMark Adams auto x = new Kokkos::View<PetscReal *, Kokkos::LayoutLeft>("x", nip); 165e8d2b73aSMark Adams SData_d->x = static_cast<void *>(x); 166e8d2b73aSMark Adams const Kokkos::View<PetscReal *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_y(a_y, nip); 167e8d2b73aSMark Adams auto y = new Kokkos::View<PetscReal *, Kokkos::LayoutLeft>("y", nip); 168e8d2b73aSMark Adams SData_d->y = static_cast<void *>(y); 169e8d2b73aSMark Adams const Kokkos::View<PetscReal *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_w(a_w, nip); 170e8d2b73aSMark Adams auto w = new Kokkos::View<PetscReal *, Kokkos::LayoutLeft>("w", nip); 171e8d2b73aSMark Adams SData_d->w = static_cast<void *>(w); 172e8d2b73aSMark Adams 173e8d2b73aSMark Adams Kokkos::deep_copy(*alpha, h_alpha); 174e8d2b73aSMark Adams Kokkos::deep_copy(*beta, h_beta); 175e8d2b73aSMark Adams Kokkos::deep_copy(*invMass, h_invMass); 176e8d2b73aSMark Adams Kokkos::deep_copy(*B, h_BB); 177e8d2b73aSMark Adams Kokkos::deep_copy(*D, h_DD); 178e8d2b73aSMark Adams Kokkos::deep_copy(*invJ, h_invJ); 179e8d2b73aSMark Adams Kokkos::deep_copy(*x, h_x); 180e8d2b73aSMark Adams Kokkos::deep_copy(*y, h_y); 181e8d2b73aSMark Adams Kokkos::deep_copy(*w, h_w); 182e8d2b73aSMark Adams 1838a6f2e61SMark Adams if (dim == 3) { 184984ed092SMark Adams const Kokkos::View<PetscReal *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_z(a_z, nip); 1858a6f2e61SMark Adams auto z = new Kokkos::View<PetscReal *, Kokkos::LayoutLeft>("z", nip); 1868a6f2e61SMark Adams SData_d->z = static_cast<void *>(z); 1878a6f2e61SMark Adams Kokkos::deep_copy(*z, h_z); 1888a6f2e61SMark Adams } else SData_d->z = NULL; 1898a6f2e61SMark Adams 1908a6f2e61SMark Adams // 1918a6f2e61SMark Adams const Kokkos::View<PetscInt *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_NCells(a_numCells, num_grids); 1928a6f2e61SMark Adams auto nc = new Kokkos::View<PetscInt *, Kokkos::LayoutLeft>("NCells", num_grids); 1938a6f2e61SMark Adams SData_d->NCells = static_cast<void *>(nc); 1948a6f2e61SMark Adams Kokkos::deep_copy(*nc, h_NCells); 1958a6f2e61SMark Adams 1968a6f2e61SMark Adams const Kokkos::View<PetscInt *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_species_offset(a_species_offset, num_grids + 1); 1978a6f2e61SMark Adams auto soff = new Kokkos::View<PetscInt *, Kokkos::LayoutLeft>("species_offset", num_grids + 1); 1988a6f2e61SMark Adams SData_d->species_offset = static_cast<void *>(soff); 1998a6f2e61SMark Adams Kokkos::deep_copy(*soff, h_species_offset); 2008a6f2e61SMark Adams 2018a6f2e61SMark Adams const Kokkos::View<PetscInt *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_mat_offset(a_mat_offset, num_grids + 1); 2028a6f2e61SMark Adams auto moff = new Kokkos::View<PetscInt *, Kokkos::LayoutLeft>("mat_offset", num_grids + 1); 2038a6f2e61SMark Adams SData_d->mat_offset = static_cast<void *>(moff); 2048a6f2e61SMark Adams Kokkos::deep_copy(*moff, h_mat_offset); 2058a6f2e61SMark Adams 2068a6f2e61SMark Adams const Kokkos::View<PetscInt *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_ip_offset(ip_offset, num_grids + 1); 2078a6f2e61SMark Adams auto ipoff = new Kokkos::View<PetscInt *, Kokkos::LayoutLeft>("ip_offset", num_grids + 1); 2088a6f2e61SMark Adams SData_d->ip_offset = static_cast<void *>(ipoff); 2098a6f2e61SMark Adams Kokkos::deep_copy(*ipoff, h_ip_offset); 2108a6f2e61SMark Adams 2118a6f2e61SMark Adams const Kokkos::View<PetscInt *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_elem_offset(elem_offset, num_grids + 1); 2128a6f2e61SMark Adams auto eoff = new Kokkos::View<PetscInt *, Kokkos::LayoutLeft>("elem_offset", num_grids + 1); 2138a6f2e61SMark Adams SData_d->elem_offset = static_cast<void *>(eoff); 2148a6f2e61SMark Adams Kokkos::deep_copy(*eoff, h_elem_offset); 2158a6f2e61SMark Adams 2168a6f2e61SMark Adams const Kokkos::View<PetscInt *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_ipf_offset(ipf_offset, num_grids + 1); 2178a6f2e61SMark Adams auto ipfoff = new Kokkos::View<PetscInt *, Kokkos::LayoutLeft>("ipf_offset", num_grids + 1); 2188a6f2e61SMark Adams SData_d->ipf_offset = static_cast<void *>(ipfoff); 2198a6f2e61SMark Adams Kokkos::deep_copy(*ipfoff, h_ipf_offset); 2208a6f2e61SMark Adams #if defined(LANDAU_LAYOUT_LEFT) // preallocate dynamic data, no copy 2218fdabdddSMark Adams auto ipfdf_data = new Kokkos::View<PetscReal ***, Kokkos::LayoutLeft>("fdf", batch_sz, dim + 1, IPf_sz); 2228a6f2e61SMark Adams #else 2238fdabdddSMark Adams auto ipfdf_data = new Kokkos::View<PetscReal ***, Kokkos::LayoutRight>("fdf", batch_sz, dim + 1, IPf_sz); 2248a6f2e61SMark Adams #endif 2258a6f2e61SMark Adams SData_d->ipfdf_data = static_cast<void *>(ipfdf_data); 2268fdabdddSMark Adams auto Eq_m = new Kokkos::View<PetscReal *, Kokkos::LayoutLeft>("Eq_m", Nftot); // allocate but do not set, same for whole batch 227e8d2b73aSMark Adams SData_d->Eq_m = static_cast<void *>(Eq_m); 228cada7fc7SMark Adams const Kokkos::View<LandauIdx *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_coo_elem_offsets((LandauIdx *)SData_d->coo_elem_offsets, SData_d->coo_n_cellsTot + 1); 229cada7fc7SMark Adams auto coo_elem_offsets = new Kokkos::View<LandauIdx *, Kokkos::LayoutLeft>("coo_elem_offsets", SData_d->coo_n_cellsTot + 1); 230cada7fc7SMark Adams const Kokkos::View<LandauIdx *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_coo_elem_fullNb((LandauIdx *)SData_d->coo_elem_fullNb, SData_d->coo_n_cellsTot); 231cada7fc7SMark Adams auto coo_elem_fullNb = new Kokkos::View<LandauIdx *, Kokkos::LayoutLeft>("coo_elem_offsets", SData_d->coo_n_cellsTot); 232cada7fc7SMark Adams const Kokkos::View<LandauIdx *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_coo_elem_point_offsets((LandauIdx *)SData_d->coo_elem_point_offsets, SData_d->coo_n_cellsTot * (LANDAU_MAX_NQ + 1)); 233cada7fc7SMark Adams auto coo_elem_point_offsets = new Kokkos::View<LandauIdx *, Kokkos::LayoutLeft>("coo_elem_point_offsets", SData_d->coo_n_cellsTot * (LANDAU_MAX_NQ + 1)); 234bfc784b7SMark Adams // assign & copy 235bfc784b7SMark Adams Kokkos::deep_copy(*coo_elem_offsets, h_coo_elem_offsets); 236bfc784b7SMark Adams Kokkos::deep_copy(*coo_elem_fullNb, h_coo_elem_fullNb); 237bfc784b7SMark Adams Kokkos::deep_copy(*coo_elem_point_offsets, h_coo_elem_point_offsets); 238bfc784b7SMark Adams // need to free this now and use pointer space 2399566063dSJacob Faibussowitsch PetscCall(PetscFree3(SData_d->coo_elem_offsets, SData_d->coo_elem_fullNb, SData_d->coo_elem_point_offsets)); 240cada7fc7SMark Adams SData_d->coo_elem_offsets = static_cast<void *>(coo_elem_offsets); 241cada7fc7SMark Adams SData_d->coo_elem_fullNb = static_cast<void *>(coo_elem_fullNb); 242cada7fc7SMark Adams SData_d->coo_elem_point_offsets = static_cast<void *>(coo_elem_point_offsets); 243a31f6053SMark Adams auto coo_vals = new Kokkos::View<PetscScalar *, Kokkos::LayoutRight, Kokkos::DefaultExecutionSpace>("coo_vals", SData_d->coo_size); 244a31f6053SMark Adams SData_d->coo_vals = static_cast<void *>(coo_vals); 245e8d2b73aSMark Adams } 2468a6f2e61SMark Adams SData_d->maps = NULL; // not used 247e8d2b73aSMark Adams PetscFunctionReturn(0); 248e8d2b73aSMark Adams } 249e8d2b73aSMark Adams 250*d71ae5a4SJacob Faibussowitsch PetscErrorCode LandauKokkosStaticDataClear(LandauStaticData *SData_d) 251*d71ae5a4SJacob Faibussowitsch { 252e8d2b73aSMark Adams PetscFunctionBegin; 253e8d2b73aSMark Adams if (SData_d->alpha) { 254e8d2b73aSMark Adams auto alpha = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->alpha); 255e8d2b73aSMark Adams delete alpha; 2568a6f2e61SMark Adams SData_d->alpha = NULL; 257e8d2b73aSMark Adams auto beta = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->beta); 258e8d2b73aSMark Adams delete beta; 259e8d2b73aSMark Adams auto invMass = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->invMass); 260e8d2b73aSMark Adams delete invMass; 261e8d2b73aSMark Adams auto B = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->B); 262e8d2b73aSMark Adams delete B; 263e8d2b73aSMark Adams auto D = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->D); 264e8d2b73aSMark Adams delete D; 265e8d2b73aSMark Adams auto invJ = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->invJ); 266e8d2b73aSMark Adams delete invJ; 267e8d2b73aSMark Adams auto x = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->x); 268e8d2b73aSMark Adams delete x; 269e8d2b73aSMark Adams auto y = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->y); 270e8d2b73aSMark Adams delete y; 2718a6f2e61SMark Adams if (SData_d->z) { 272e8d2b73aSMark Adams auto z = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->z); 273e8d2b73aSMark Adams delete z; 2748a6f2e61SMark Adams } 2758a6f2e61SMark Adams #if defined(LANDAU_LAYOUT_LEFT) // preallocate dynamic data, no copy 2768fdabdddSMark Adams auto z = static_cast<Kokkos::View<PetscReal ***, Kokkos::LayoutLeft> *>(SData_d->ipfdf_data); 2778a6f2e61SMark Adams #else 2788fdabdddSMark Adams auto z = static_cast<Kokkos::View<PetscReal ***, Kokkos::LayoutRight> *>(SData_d->ipfdf_data); 2798a6f2e61SMark Adams #endif 2808a6f2e61SMark Adams delete z; 281e8d2b73aSMark Adams auto w = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->w); 282e8d2b73aSMark Adams delete w; 283e8d2b73aSMark Adams auto Eq_m = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->Eq_m); 284e8d2b73aSMark Adams delete Eq_m; 2858a6f2e61SMark Adams // offset 2868a6f2e61SMark Adams auto nc = static_cast<Kokkos::View<PetscInt *, Kokkos::LayoutLeft> *>(SData_d->NCells); 2878a6f2e61SMark Adams delete nc; 2888a6f2e61SMark Adams auto soff = static_cast<Kokkos::View<PetscInt *, Kokkos::LayoutLeft> *>(SData_d->species_offset); 2898a6f2e61SMark Adams delete soff; 2908a6f2e61SMark Adams auto moff = static_cast<Kokkos::View<PetscInt *, Kokkos::LayoutLeft> *>(SData_d->mat_offset); 2918a6f2e61SMark Adams delete moff; 2928a6f2e61SMark Adams auto ipoff = static_cast<Kokkos::View<PetscInt *, Kokkos::LayoutLeft> *>(SData_d->ip_offset); 2938a6f2e61SMark Adams delete ipoff; 2948a6f2e61SMark Adams auto eoff = static_cast<Kokkos::View<PetscInt *, Kokkos::LayoutLeft> *>(SData_d->elem_offset); 2958a6f2e61SMark Adams delete eoff; 2968a6f2e61SMark Adams auto ipfoff = static_cast<Kokkos::View<PetscInt *, Kokkos::LayoutLeft> *>(SData_d->ipf_offset); 2978a6f2e61SMark Adams delete ipfoff; 298bfc784b7SMark Adams auto coo_elem_offsets = static_cast<Kokkos::View<LandauIdx *, Kokkos::LayoutLeft> *>((void *)SData_d->coo_elem_offsets); 299bfc784b7SMark Adams delete coo_elem_offsets; 300bfc784b7SMark Adams auto coo_elem_fullNb = static_cast<Kokkos::View<LandauIdx *, Kokkos::LayoutLeft> *>((void *)SData_d->coo_elem_fullNb); 301bfc784b7SMark Adams delete coo_elem_fullNb; 302cada7fc7SMark Adams auto coo_elem_point_offsets = static_cast<Kokkos::View<LandauIdx *, Kokkos::LayoutLeft> *>((void *)SData_d->coo_elem_point_offsets); 303bfc784b7SMark Adams delete coo_elem_point_offsets; 304bfc784b7SMark Adams SData_d->coo_elem_offsets = NULL; 305bfc784b7SMark Adams SData_d->coo_elem_point_offsets = NULL; 306bfc784b7SMark Adams SData_d->coo_elem_fullNb = NULL; 307a31f6053SMark Adams auto coo_vals = static_cast<Kokkos::View<PetscScalar *, Kokkos::LayoutRight, Kokkos::DefaultExecutionSpace> *>((void *)SData_d->coo_vals); 308a31f6053SMark Adams delete coo_vals; 309af0767daSMark Adams } 310e8d2b73aSMark Adams PetscFunctionReturn(0); 311e8d2b73aSMark Adams } 312e8d2b73aSMark Adams 31359118022SMark Adams #define KOKKOS_SHARED_LEVEL 0 // 0 is shared, 1 is global 31459118022SMark Adams 3158a6f2e61SMark Adams KOKKOS_INLINE_FUNCTION 316*d71ae5a4SJacob Faibussowitsch PetscErrorCode landau_mat_assemble(PetscSplitCSRDataStructure d_mat, PetscScalar *coo_vals, const PetscScalar Aij, const PetscInt f, const PetscInt g, const PetscInt Nb, PetscInt moffset, const PetscInt elem, const PetscInt fieldA, const P4estVertexMaps *d_maps, const LandauIdx coo_elem_offsets[], const LandauIdx coo_elem_fullNb[], const LandauIdx (*coo_elem_point_offsets)[LANDAU_MAX_NQ + 1], const PetscInt glb_elem_idx, const PetscInt bid_coo_sz_batch) 317*d71ae5a4SJacob Faibussowitsch { 318ad4b5651SMark Adams PetscInt idx, q, nr, nc, d; 3198a6f2e61SMark Adams const LandauIdx *const Idxs = &d_maps->gIdx[elem][fieldA][0]; 320bfc784b7SMark Adams PetscScalar row_scale[LANDAU_MAX_Q_FACE] = {0}, col_scale[LANDAU_MAX_Q_FACE] = {0}; 321bfc784b7SMark Adams if (coo_vals) { // mirror (i,j) in CreateStaticGPUData 322bfc784b7SMark Adams const int fullNb = coo_elem_fullNb[glb_elem_idx], fullNb2 = fullNb * fullNb; 323bfc784b7SMark Adams idx = Idxs[f]; 324bfc784b7SMark Adams if (idx >= 0) { 325bfc784b7SMark Adams nr = 1; 326bfc784b7SMark Adams row_scale[0] = 1.; 327bfc784b7SMark Adams } else { 328bfc784b7SMark Adams idx = -idx - 1; 329bfc784b7SMark Adams for (q = 0, nr = 0; q < d_maps->num_face; q++, nr++) { 330bfc784b7SMark Adams if (d_maps->c_maps[idx][q].gid < 0) break; 331bfc784b7SMark Adams row_scale[q] = d_maps->c_maps[idx][q].scale; 332bfc784b7SMark Adams } 333bfc784b7SMark Adams } 334bfc784b7SMark Adams idx = Idxs[g]; 335bfc784b7SMark Adams if (idx >= 0) { 336bfc784b7SMark Adams nc = 1; 337bfc784b7SMark Adams col_scale[0] = 1.; 338bfc784b7SMark Adams } else { 339bfc784b7SMark Adams idx = -idx - 1; 340bfc784b7SMark Adams nc = d_maps->num_face; 341bfc784b7SMark Adams for (q = 0, nc = 0; q < d_maps->num_face; q++, nc++) { 342bfc784b7SMark Adams if (d_maps->c_maps[idx][q].gid < 0) break; 343bfc784b7SMark Adams col_scale[q] = d_maps->c_maps[idx][q].scale; 344bfc784b7SMark Adams } 345bfc784b7SMark Adams } 346cada7fc7SMark Adams const int idx0 = bid_coo_sz_batch + coo_elem_offsets[glb_elem_idx] + fieldA * fullNb2 + fullNb * coo_elem_point_offsets[glb_elem_idx][f] + nr * coo_elem_point_offsets[glb_elem_idx][g]; 347bfc784b7SMark Adams for (int q = 0, idx2 = idx0; q < nr; q++) { 348ad540459SPierre Jolivet for (int d = 0; d < nc; d++, idx2++) coo_vals[idx2] = row_scale[q] * col_scale[d] * Aij; 349bfc784b7SMark Adams } 350bfc784b7SMark Adams } else { 351bfc784b7SMark Adams PetscScalar vals[LANDAU_MAX_Q_FACE * LANDAU_MAX_Q_FACE] = {0}; 352ad4b5651SMark Adams PetscInt rows[LANDAU_MAX_Q_FACE], cols[LANDAU_MAX_Q_FACE]; 353ad4b5651SMark Adams idx = Idxs[f]; 3548a6f2e61SMark Adams if (idx >= 0) { 3558a6f2e61SMark Adams nr = 1; 356ad4b5651SMark Adams rows[0] = idx; 357ad4b5651SMark Adams row_scale[0] = 1.; 3588a6f2e61SMark Adams } else { 359ad4b5651SMark Adams idx = -idx - 1; 360ad4b5651SMark Adams for (q = 0, nr = 0; q < d_maps->num_face; q++, nr++) { 361ad4b5651SMark Adams if (d_maps->c_maps[idx][q].gid < 0) break; 362ad4b5651SMark Adams rows[q] = d_maps->c_maps[idx][q].gid; 363ad4b5651SMark Adams row_scale[q] = d_maps->c_maps[idx][q].scale; 3648a6f2e61SMark Adams } 365ad4b5651SMark Adams } 366ad4b5651SMark Adams idx = Idxs[g]; 3678a6f2e61SMark Adams if (idx >= 0) { 3688a6f2e61SMark Adams nc = 1; 369ad4b5651SMark Adams cols[0] = idx; 370ad4b5651SMark Adams col_scale[0] = 1.; 3718a6f2e61SMark Adams } else { 372ad4b5651SMark Adams idx = -idx - 1; 373ad4b5651SMark Adams for (q = 0, nc = 0; q < d_maps->num_face; q++, nc++) { 374ad4b5651SMark Adams if (d_maps->c_maps[idx][q].gid < 0) break; 375ad4b5651SMark Adams cols[q] = d_maps->c_maps[idx][q].gid; 376ad4b5651SMark Adams col_scale[q] = d_maps->c_maps[idx][q].scale; 3778a6f2e61SMark Adams } 378ad4b5651SMark Adams } 379bfc784b7SMark Adams 380ad4b5651SMark Adams for (q = 0; q < nr; q++) rows[q] = rows[q] + moffset; 381ad4b5651SMark Adams for (q = 0; q < nc; q++) cols[q] = cols[q] + moffset; 3828a6f2e61SMark Adams for (q = 0; q < nr; q++) { 383ad540459SPierre Jolivet for (d = 0; d < nc; d++) vals[q * nc + d] = row_scale[q] * col_scale[d] * Aij; 3848a6f2e61SMark Adams } 385ad4b5651SMark Adams MatSetValuesDevice(d_mat, nr, rows, nc, cols, vals, ADD_VALUES); 386bfc784b7SMark Adams } 3878a6f2e61SMark Adams return 0; 3888a6f2e61SMark Adams } 3898a6f2e61SMark Adams 390*d71ae5a4SJacob Faibussowitsch PetscErrorCode LandauKokkosJacobian(DM plex[], const PetscInt Nq, const PetscInt batch_sz, const PetscInt num_grids, const PetscInt a_numCells[], PetscReal a_Eq_m[], PetscScalar a_elem_closure[], const PetscScalar a_xarray[], const LandauStaticData *SData_d, const PetscReal shift, const PetscLogEvent events[], const PetscInt a_mat_offset[], const PetscInt a_species_offset[], Mat subJ[], Mat JacP) 391*d71ae5a4SJacob Faibussowitsch { 392e8d2b73aSMark Adams using scr_mem_t = Kokkos::DefaultExecutionSpace::scratch_memory_space; 39319be780dSMark Adams using real2_scr_t = Kokkos::View<PetscScalar **, Kokkos::LayoutRight, scr_mem_t>; 394e8d2b73aSMark Adams using g2_scr_t = Kokkos::View<PetscReal ***, Kokkos::LayoutRight, scr_mem_t>; 395e8d2b73aSMark Adams using g3_scr_t = Kokkos::View<PetscReal ****, Kokkos::LayoutRight, scr_mem_t>; 3968fdabdddSMark Adams PetscInt Nb = Nq, dim, num_cells_max, Nf_max, num_cells_batch; 397dbabbaf5SMark Adams int nfaces = 0, vector_size = 512 / Nq; 398e8d2b73aSMark Adams LandauCtx *ctx; 399e8d2b73aSMark Adams PetscReal *d_Eq_m = NULL; 4008a6f2e61SMark Adams PetscScalar *d_vertex_f = NULL; 4018a6f2e61SMark Adams P4estVertexMaps *maps[LANDAU_MAX_GRIDS]; // this gets captured 4028a6f2e61SMark Adams PetscSplitCSRDataStructure d_mat; 4038fdabdddSMark Adams PetscContainer container; 404bd08a171SMark Adams const int conc = Kokkos::DefaultExecutionSpace().concurrency(), openmp = !!(conc < 1000), team_size = (openmp == 0) ? Nq : 1; 405bfc784b7SMark Adams const PetscInt coo_sz_batch = SData_d->coo_size / batch_sz; // capture 406e8d2b73aSMark Adams auto d_alpha_k = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->alpha); //static data 407e8d2b73aSMark Adams const PetscReal *d_alpha = d_alpha_k->data(); 4088a6f2e61SMark Adams const PetscInt Nftot = d_alpha_k->size(); // total number of species 409e8d2b73aSMark Adams auto d_beta_k = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->beta); 410e8d2b73aSMark Adams const PetscReal *d_beta = d_beta_k->data(); 411e8d2b73aSMark Adams auto d_invMass_k = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->invMass); 412e8d2b73aSMark Adams const PetscReal *d_invMass = d_invMass_k->data(); 413e8d2b73aSMark Adams auto d_B_k = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->B); 414e8d2b73aSMark Adams const PetscReal *d_BB = d_B_k->data(); 415e8d2b73aSMark Adams auto d_D_k = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->D); 416e8d2b73aSMark Adams const PetscReal *d_DD = d_D_k->data(); 417e8d2b73aSMark Adams auto d_invJ_k = *static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->invJ); // use Kokkos vector in kernels 418e8d2b73aSMark Adams auto d_x_k = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->x); //static data 419e8d2b73aSMark Adams const PetscReal *d_x = d_x_k->data(); 420e8d2b73aSMark Adams auto d_y_k = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->y); //static data 421e8d2b73aSMark Adams const PetscReal *d_y = d_y_k->data(); 422e8d2b73aSMark Adams auto d_z_k = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->z); //static data 4238a6f2e61SMark Adams const PetscReal *d_z = (LANDAU_DIM == 3) ? d_z_k->data() : NULL; 4248a6f2e61SMark Adams auto d_w_k = *static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->w); //static data 4258a6f2e61SMark Adams const PetscReal *d_w = d_w_k.data(); 4268fdabdddSMark Adams // grid offsets - single vertex grid data 4278a6f2e61SMark Adams auto d_numCells_k = static_cast<Kokkos::View<PetscInt *, Kokkos::LayoutLeft> *>(SData_d->NCells); 4288a6f2e61SMark Adams const PetscInt *d_numCells = d_numCells_k->data(); 4298a6f2e61SMark Adams auto d_species_offset_k = static_cast<Kokkos::View<PetscInt *, Kokkos::LayoutLeft> *>(SData_d->species_offset); 4308a6f2e61SMark Adams const PetscInt *d_species_offset = d_species_offset_k->data(); 4318a6f2e61SMark Adams auto d_mat_offset_k = static_cast<Kokkos::View<PetscInt *, Kokkos::LayoutLeft> *>(SData_d->mat_offset); 4328a6f2e61SMark Adams const PetscInt *d_mat_offset = d_mat_offset_k->data(); 4338a6f2e61SMark Adams auto d_ip_offset_k = static_cast<Kokkos::View<PetscInt *, Kokkos::LayoutLeft> *>(SData_d->ip_offset); 4348a6f2e61SMark Adams const PetscInt *d_ip_offset = d_ip_offset_k->data(); 4358a6f2e61SMark Adams auto d_ipf_offset_k = static_cast<Kokkos::View<PetscInt *, Kokkos::LayoutLeft> *>(SData_d->ipf_offset); 4368a6f2e61SMark Adams const PetscInt *d_ipf_offset = d_ipf_offset_k->data(); 4378a6f2e61SMark Adams auto d_elem_offset_k = static_cast<Kokkos::View<PetscInt *, Kokkos::LayoutLeft> *>(SData_d->elem_offset); 4388a6f2e61SMark Adams const PetscInt *d_elem_offset = d_elem_offset_k->data(); 4398fdabdddSMark Adams #if defined(LANDAU_LAYOUT_LEFT) // preallocate dynamic data, including batched vertices 4408fdabdddSMark Adams Kokkos::View<PetscReal ***, Kokkos::LayoutLeft> d_fdf_k = *static_cast<Kokkos::View<PetscReal ***, Kokkos::LayoutLeft> *>(SData_d->ipfdf_data); 4418a6f2e61SMark Adams #else 4428fdabdddSMark Adams Kokkos::View<PetscReal ***, Kokkos::LayoutRight> d_fdf_k = *static_cast<Kokkos::View<PetscReal ***, Kokkos::LayoutRight> *>(SData_d->ipfdf_data); 4438a6f2e61SMark Adams #endif 4448fdabdddSMark Adams auto d_Eq_m_k = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->Eq_m); // static storage, dynamci data - E(t), copy later, single vertex 445bfc784b7SMark Adams // COO 446cada7fc7SMark Adams auto d_coo_elem_offsets_k = static_cast<Kokkos::View<LandauIdx *, Kokkos::LayoutLeft> *>(SData_d->coo_elem_offsets); 447cada7fc7SMark Adams LandauIdx *d_coo_elem_offsets = (SData_d->coo_size == 0) ? NULL : d_coo_elem_offsets_k->data(); 448cada7fc7SMark Adams auto d_coo_elem_fullNb_k = static_cast<Kokkos::View<LandauIdx *, Kokkos::LayoutLeft> *>(SData_d->coo_elem_fullNb); 449cada7fc7SMark Adams LandauIdx *d_coo_elem_fullNb = (SData_d->coo_size == 0) ? NULL : d_coo_elem_fullNb_k->data(); 450cada7fc7SMark Adams auto d_coo_elem_point_offsets_k = static_cast<Kokkos::View<LandauIdx *, Kokkos::LayoutLeft> *>(SData_d->coo_elem_point_offsets); 451cada7fc7SMark Adams LandauIdx(*d_coo_elem_point_offsets)[LANDAU_MAX_NQ + 1] = (SData_d->coo_size == 0) ? NULL : (LandauIdx(*)[LANDAU_MAX_NQ + 1]) d_coo_elem_point_offsets_k->data(); 452a31f6053SMark Adams auto d_coo_vals_k = static_cast<Kokkos::View<PetscScalar *, Kokkos::LayoutRight> *>(SData_d->coo_vals); 453a31f6053SMark Adams PetscScalar *d_coo_vals = (SData_d->coo_size == 0) ? NULL : d_coo_vals_k->data(); 4548fdabdddSMark Adams 455e8d2b73aSMark Adams PetscFunctionBegin; 456a31f6053SMark Adams while (vector_size & (vector_size - 1)) vector_size = vector_size & (vector_size - 1); 457dbabbaf5SMark Adams if (vector_size > 16) vector_size = 16; // printf("DEBUG\n"); 4589566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(events[3], 0, 0, 0, 0)); 4599566063dSJacob Faibussowitsch PetscCall(DMGetApplicationContext(plex[0], &ctx)); 46028b400f6SJacob Faibussowitsch PetscCheck(ctx, PETSC_COMM_SELF, PETSC_ERR_PLIB, "no context"); 4619566063dSJacob Faibussowitsch PetscCall(DMGetDimension(plex[0], &dim)); 46263a3b9bcSJacob Faibussowitsch PetscCheck(LANDAU_DIM == dim, PETSC_COMM_WORLD, PETSC_ERR_PLIB, "dim %" PetscInt_FMT " != LANDAU_DIM %d", dim, LANDAU_DIM); 463a587d139SMark if (ctx->gpu_assembly) { 4649566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject)JacP, "assembly_maps", (PetscObject *)&container)); 465bfc784b7SMark Adams if (container) { 466a587d139SMark P4estVertexMaps *h_maps = NULL; 4679566063dSJacob Faibussowitsch PetscCall(PetscContainerGetPointer(container, (void **)&h_maps)); 4688a6f2e61SMark Adams for (PetscInt grid = 0; grid < num_grids; grid++) { 4698a6f2e61SMark Adams if (h_maps[grid].d_self) { 4708a6f2e61SMark Adams maps[grid] = h_maps[grid].d_self; 4718a6f2e61SMark Adams nfaces = h_maps[grid].num_face; // nface=0 for CPU assembly 472a587d139SMark } else { 473a587d139SMark SETERRQ(PETSC_COMM_SELF, PETSC_ERR_PLIB, "GPU assembly but no metadata in container"); 474a587d139SMark } 4758a6f2e61SMark Adams } 476bfc784b7SMark Adams if (!d_coo_vals) { 477a587d139SMark // this does the setup the first time called 4789566063dSJacob Faibussowitsch PetscCall(MatKokkosGetDeviceMatWrite(JacP, &d_mat)); 479bfc784b7SMark Adams } else { 4808fdabdddSMark Adams d_mat = NULL; 481a587d139SMark } 482bfc784b7SMark Adams } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_PLIB, "GPU assembly but no metadata in container"); 483a587d139SMark } else { 4848a6f2e61SMark Adams for (PetscInt grid = 0; grid < num_grids; grid++) maps[grid] = NULL; 4858a6f2e61SMark Adams nfaces = 0; 4868fdabdddSMark Adams d_mat = NULL; 4878fdabdddSMark Adams container = NULL; 488a587d139SMark } 4898fdabdddSMark Adams num_cells_batch = Nf_max = num_cells_max = 0; 4908a6f2e61SMark Adams for (PetscInt grid = 0; grid < num_grids; grid++) { 4918a6f2e61SMark Adams int Nfloc = a_species_offset[grid + 1] - a_species_offset[grid]; 4928a6f2e61SMark Adams if (Nfloc > Nf_max) Nf_max = Nfloc; 4938a6f2e61SMark Adams if (a_numCells[grid] > num_cells_max) num_cells_max = a_numCells[grid]; 4948fdabdddSMark Adams num_cells_batch += a_numCells[grid]; // we don't have a host element offset here (but in ctx) 4958a6f2e61SMark Adams } 496d9008a5dSMark Adams const int elem_mat_num_cells_max_grid = container ? 0 : num_cells_max; 497bfbbad94Smarkadams4 #ifdef LAND_SUPPORT_CPU_ASS 498bfbbad94Smarkadams4 const int totDim_max = Nf_max * Nq, elem_mat_size_max = totDim_max * totDim_max; 499a31f6053SMark Adams Kokkos::View<PetscScalar ****, Kokkos::LayoutRight> d_elem_mats("element matrices", batch_sz, num_grids, elem_mat_num_cells_max_grid, elem_mat_size_max); // not used (cpu assembly) 500bfbbad94Smarkadams4 #endif 5018a6f2e61SMark Adams const Kokkos::View<PetscReal *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_Eq_m_k(a_Eq_m, Nftot); 5028a6f2e61SMark Adams if (a_elem_closure || a_xarray) { 503e8d2b73aSMark Adams Kokkos::deep_copy(*d_Eq_m_k, h_Eq_m_k); 504e8d2b73aSMark Adams d_Eq_m = d_Eq_m_k->data(); 5058a6f2e61SMark Adams } else d_Eq_m = NULL; 5069566063dSJacob Faibussowitsch PetscCall(PetscKokkosInitializeCheck()); 5079566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(events[3], 0, 0, 0, 0)); 5088a6f2e61SMark Adams if (a_elem_closure || a_xarray) { // Jacobian, create f & df 5098a6f2e61SMark Adams Kokkos::View<PetscScalar *, Kokkos::LayoutLeft> *d_vertex_f_k = NULL; 5109566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(events[1], 0, 0, 0, 0)); 5118a6f2e61SMark Adams if (a_elem_closure) { 5128a6f2e61SMark Adams PetscInt closure_sz = 0; // argh, don't have this on the host!!! 5138a6f2e61SMark Adams for (PetscInt grid = 0; grid < num_grids; grid++) { 5148a6f2e61SMark Adams PetscInt nfloc = a_species_offset[grid + 1] - a_species_offset[grid]; 5158a6f2e61SMark Adams closure_sz += Nq * nfloc * a_numCells[grid]; 5168a6f2e61SMark Adams } 5178fdabdddSMark Adams closure_sz *= batch_sz; 5188a6f2e61SMark Adams d_vertex_f_k = new Kokkos::View<PetscScalar *, Kokkos::LayoutLeft>("closure", closure_sz); 5198a6f2e61SMark Adams const Kokkos::View<PetscScalar *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_closure_k(a_elem_closure, closure_sz); // Vertex data for each element 5208a6f2e61SMark Adams Kokkos::deep_copy(*d_vertex_f_k, h_closure_k); 5218a6f2e61SMark Adams d_vertex_f = d_vertex_f_k->data(); 522af0767daSMark Adams } else { 5238a6f2e61SMark Adams d_vertex_f = (PetscScalar *)a_xarray; 524af0767daSMark Adams } 5259566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(events[1], 0, 0, 0, 0)); 5269566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(events[8], 0, 0, 0, 0)); 5279566063dSJacob Faibussowitsch PetscCall(PetscLogGpuTimeBegin()); 52819be780dSMark Adams 52919be780dSMark Adams const int scr_bytes_fdf = real2_scr_t::shmem_size(Nf_max, Nb); 530dbabbaf5SMark Adams PetscCall(PetscInfo(plex[0], "df & f shared memory size: %d bytes in level, %d num cells total=%d, team size=%d, vector size=%d, #face=%d, Nf_max=%d\n", scr_bytes_fdf, KOKKOS_SHARED_LEVEL, num_cells_batch * batch_sz, team_size, vector_size, nfaces, Nf_max)); 5319371c9d4SSatish Balay Kokkos::parallel_for( 5329371c9d4SSatish Balay "f, df", Kokkos::TeamPolicy<>(num_cells_batch * batch_sz, team_size, /* Kokkos::AUTO */ vector_size).set_scratch_size(KOKKOS_SHARED_LEVEL, Kokkos::PerTeam(scr_bytes_fdf)), KOKKOS_LAMBDA(const team_member team) { 5338fdabdddSMark Adams const PetscInt b_Nelem = d_elem_offset[num_grids], b_elem_idx = team.league_rank() % b_Nelem, b_id = team.league_rank() / b_Nelem, IPf_sz_glb = d_ipf_offset[num_grids]; 5348a6f2e61SMark Adams // find my grid 5358fdabdddSMark Adams PetscInt grid = 0; 5368fdabdddSMark Adams while (b_elem_idx >= d_elem_offset[grid + 1]) grid++; 5378a6f2e61SMark Adams { 5388fdabdddSMark Adams const PetscInt loc_nip = d_numCells[grid] * Nq, loc_Nf = d_species_offset[grid + 1] - d_species_offset[grid], loc_elem = b_elem_idx - d_elem_offset[grid]; 5398fdabdddSMark Adams const PetscInt moffset = LAND_MOFFSET(b_id, grid, batch_sz, num_grids, d_mat_offset); 54019be780dSMark Adams { 54119be780dSMark Adams real2_scr_t s_coef_k(team.team_scratch(KOKKOS_SHARED_LEVEL), Nf_max, Nb); 54219be780dSMark Adams PetscScalar *coef; 5438fdabdddSMark Adams const PetscReal *invJe = &d_invJ_k((d_ip_offset[grid] + loc_elem * Nq) * dim * dim); 544a587d139SMark // un pack IPData 5458a6f2e61SMark Adams if (!maps[grid]) { 5468fdabdddSMark Adams coef = &d_vertex_f[b_id * IPf_sz_glb + d_ipf_offset[grid] + loc_elem * Nb * loc_Nf]; // closure and IP indexing are the same 547af0767daSMark Adams } else { 54819be780dSMark Adams coef = s_coef_k.data(); 54919be780dSMark Adams Kokkos::parallel_for(Kokkos::TeamThreadRange(team, 0, (int)loc_Nf), [=](int f) { 55019be780dSMark Adams //for (int f = 0; f < loc_Nf; ++f) { 55119be780dSMark Adams Kokkos::parallel_for(Kokkos::ThreadVectorRange(team, 0, (int)Nb), [=](int b) { 55219be780dSMark Adams //for (int b = 0; b < Nb; ++b) { 55319be780dSMark Adams LandauIdx idx = maps[grid]->gIdx[loc_elem][f][b]; 554af0767daSMark Adams if (idx >= 0) { 55519be780dSMark Adams coef[f * Nb + b] = d_vertex_f[idx + moffset]; // xarray data, not IP, need raw array to deal with CPU assemble case (not used) 556af0767daSMark Adams } else { 557af0767daSMark Adams idx = -idx - 1; 55819be780dSMark Adams coef[f * Nb + b] = 0; 5598a6f2e61SMark Adams for (int q = 0; q < maps[grid]->num_face; q++) { 5608a6f2e61SMark Adams PetscInt id = maps[grid]->c_maps[idx][q].gid; 5618a6f2e61SMark Adams PetscScalar scale = maps[grid]->c_maps[idx][q].scale; 562f26f10aaSMark Adams if (id >= 0) coef[f * Nb + b] += scale * d_vertex_f[id + moffset]; 563af0767daSMark Adams } 564af0767daSMark Adams } 56519be780dSMark Adams }); 56619be780dSMark Adams }); 567af0767daSMark Adams } 56819be780dSMark Adams team.team_barrier(); 569a587d139SMark Kokkos::parallel_for(Kokkos::TeamThreadRange(team, 0, Nq), [=](int myQi) { 5708fdabdddSMark Adams const PetscReal *const invJ = &invJe[myQi * dim * dim]; // b_elem_idx: batch element index 571a587d139SMark const PetscReal *Bq = &d_BB[myQi * Nb], *Dq = &d_DD[myQi * Nb * dim]; 5728fdabdddSMark Adams Kokkos::parallel_for(Kokkos::ThreadVectorRange(team, 0, (int)loc_Nf), [=](int f) { 573a587d139SMark PetscInt b, e, d; 574e8d2b73aSMark Adams PetscReal refSpaceDer[LANDAU_DIM]; 5758fdabdddSMark Adams const PetscInt idx = d_ipf_offset[grid] + f * loc_nip + loc_elem * Nq + myQi; 5768fdabdddSMark Adams d_fdf_k(b_id, 0, idx) = 0.0; 577a587d139SMark for (d = 0; d < LANDAU_DIM; ++d) refSpaceDer[d] = 0.0; 578a587d139SMark for (b = 0; b < Nb; ++b) { 57919be780dSMark Adams d_fdf_k(b_id, 0, idx) += Bq[b] * PetscRealPart(coef[f * Nb + b]); 58019be780dSMark Adams for (d = 0; d < dim; ++d) refSpaceDer[d] += Dq[b * dim + d] * PetscRealPart(coef[f * Nb + b]); 581a587d139SMark } 582a587d139SMark for (d = 0; d < dim; ++d) { 583ad540459SPierre Jolivet for (e = 0, d_fdf_k(b_id, d + 1, idx) = 0.0; e < dim; ++e) d_fdf_k(b_id, d + 1, idx) += invJ[e * dim + d] * refSpaceDer[e]; 584a587d139SMark } 5858a6f2e61SMark Adams }); // f 5868a6f2e61SMark Adams }); // myQi 5878a6f2e61SMark Adams } 58819be780dSMark Adams team.team_barrier(); 58919be780dSMark Adams } // 'grid' scope 5908a6f2e61SMark Adams }); // global elems - fdf 5918a6f2e61SMark Adams Kokkos::fence(); 592bfbbad94Smarkadams4 PetscCall(PetscLogGpuTimeEnd()); 5939566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(events[8], 0, 0, 0, 0)); 594e6118d12SMark Adams // Jacobian 595d9008a5dSMark Adams int maximum_shared_mem_size = 64000; 596a16fd2c9SJacob Faibussowitsch PetscDevice device; 597a16fd2c9SJacob Faibussowitsch 598a16fd2c9SJacob Faibussowitsch PetscCall(PetscDeviceGetDefault_Internal(&device)); 599a16fd2c9SJacob Faibussowitsch PetscCall(PetscDeviceGetAttribute(device, PETSC_DEVICE_ATTR_SIZE_T_SHARED_MEM_PER_BLOCK, &maximum_shared_mem_size)); 600d9008a5dSMark Adams const int jac_scr_bytes = 2 * (g2_scr_t::shmem_size(dim, Nf_max, Nq) + g3_scr_t::shmem_size(dim, dim, Nf_max, Nq)); 601d9008a5dSMark Adams const int jac_shared_level = (jac_scr_bytes > maximum_shared_mem_size) ? 1 : KOKKOS_SHARED_LEVEL; 602*d71ae5a4SJacob Faibussowitsch auto jac_lambda = KOKKOS_LAMBDA(const team_member team) 603*d71ae5a4SJacob Faibussowitsch { 6048fdabdddSMark Adams const PetscInt b_Nelem = d_elem_offset[num_grids], b_elem_idx = team.league_rank() % b_Nelem, b_id = team.league_rank() / b_Nelem; 6058a6f2e61SMark Adams // find my grid 6068fdabdddSMark Adams PetscInt grid = 0; 6078fdabdddSMark Adams while (b_elem_idx >= d_elem_offset[grid + 1]) grid++; 6088a6f2e61SMark Adams { 60919be780dSMark Adams const PetscInt loc_Nf = d_species_offset[grid + 1] - d_species_offset[grid], loc_elem = b_elem_idx - d_elem_offset[grid]; 6108fdabdddSMark Adams const PetscInt moffset = LAND_MOFFSET(b_id, grid, batch_sz, num_grids, d_mat_offset); 611bfbbad94Smarkadams4 const PetscInt f_off = d_species_offset[grid]; 612bfbbad94Smarkadams4 #ifdef LAND_SUPPORT_CPU_ASS 613bfbbad94Smarkadams4 const PetscInt totDim = loc_Nf * Nq; 614bfbbad94Smarkadams4 #endif 615d9008a5dSMark Adams g2_scr_t g2(team.team_scratch(jac_shared_level), dim, loc_Nf, Nq); 616d9008a5dSMark Adams g3_scr_t g3(team.team_scratch(jac_shared_level), dim, dim, loc_Nf, Nq); 617d9008a5dSMark Adams g2_scr_t gg2(team.team_scratch(jac_shared_level), dim, loc_Nf, Nq); 618d9008a5dSMark Adams g3_scr_t gg3(team.team_scratch(jac_shared_level), dim, dim, loc_Nf, Nq); 619e0eea495SMark // get g2[] & g3[] 620e0eea495SMark Kokkos::parallel_for(Kokkos::TeamThreadRange(team, 0, Nq), [=](int myQi) { 621e0eea495SMark using Kokkos::parallel_reduce; 6228fdabdddSMark Adams const PetscInt jpidx_glb = d_ip_offset[grid] + loc_elem * Nq + myQi; 6238fdabdddSMark Adams const PetscReal *invJ = &d_invJ_k(jpidx_glb * dim * dim); 6248fdabdddSMark Adams const PetscReal vj[3] = {d_x[jpidx_glb], d_y[jpidx_glb], d_z ? d_z[jpidx_glb] : 0}, wj = d_w[jpidx_glb]; 6258a6f2e61SMark Adams landau_inner_red::TensorValueType gg_temp; // reduce on part of gg2 and g33 for IP jpidx_g 6269371c9d4SSatish Balay Kokkos::parallel_reduce( 6279371c9d4SSatish Balay Kokkos::ThreadVectorRange(team, (int)d_ip_offset[num_grids]), 6289371c9d4SSatish Balay [=](const int &ipidx, landau_inner_red::TensorValueType &ggg) { 629e8d2b73aSMark Adams const PetscReal wi = d_w[ipidx], x = d_x[ipidx], y = d_y[ipidx]; 63052cdd6eaSMark PetscReal temp1[3] = {0, 0, 0}, temp2 = 0; 6318fdabdddSMark Adams PetscInt fieldA, d2, d3, f_off_r, grid_r, ipidx_g, nip_loc_r, loc_Nf_r; 632e0eea495SMark #if LANDAU_DIM == 2 6338a6f2e61SMark Adams PetscReal Ud[2][2], Uk[2][2], mask = (PetscAbs(vj[0] - x) < 100 * PETSC_SQRT_MACHINE_EPSILON && PetscAbs(vj[1] - y) < 100 * PETSC_SQRT_MACHINE_EPSILON) ? 0. : 1.; 6348a6f2e61SMark Adams LandauTensor2D(vj, x, y, Ud, Uk, mask); 63552cdd6eaSMark #else 6367620afa1SMark Adams PetscReal U[3][3], z = d_z[ipidx], mask = (PetscAbs(vj[0]-x) < 100*PETSC_SQRT_MACHINE_EPSILON && PetscAbs(vj[1]-y) < 100*PETSC_SQRT_MACHINE_EPSILON && PetscAbs(vj[2]-z) < 100*PETSC_SQRT_MACHINE_EPSILON) ? 0. : 1.; 6378a6f2e61SMark Adams LandauTensor3D(vj, x, y, z, U, mask); 63852cdd6eaSMark #endif 6398a6f2e61SMark Adams grid_r = 0; 6408a6f2e61SMark Adams while (ipidx >= d_ip_offset[grid_r + 1]) grid_r++; // yuck search for grid 6418a6f2e61SMark Adams f_off_r = d_species_offset[grid_r]; 6428a6f2e61SMark Adams ipidx_g = ipidx - d_ip_offset[grid_r]; 6438a6f2e61SMark Adams nip_loc_r = d_numCells[grid_r] * Nq; 6448fdabdddSMark Adams loc_Nf_r = d_species_offset[grid_r + 1] - d_species_offset[grid_r]; 6458fdabdddSMark Adams for (fieldA = 0; fieldA < loc_Nf_r; ++fieldA) { 6468fdabdddSMark Adams const PetscInt idx = d_ipf_offset[grid_r] + fieldA * nip_loc_r + ipidx_g; 6478fdabdddSMark Adams temp1[0] += d_fdf_k(b_id, 1, idx) * d_beta[fieldA + f_off_r] * d_invMass[fieldA + f_off_r]; 6488fdabdddSMark Adams temp1[1] += d_fdf_k(b_id, 2, idx) * d_beta[fieldA + f_off_r] * d_invMass[fieldA + f_off_r]; 64952cdd6eaSMark #if LANDAU_DIM == 3 6508fdabdddSMark Adams temp1[2] += d_fdf_k(b_id, 3, idx) * d_beta[fieldA + f_off_r] * d_invMass[fieldA + f_off_r]; 65152cdd6eaSMark #endif 6528fdabdddSMark Adams temp2 += d_fdf_k(b_id, 0, idx) * d_beta[fieldA + f_off_r]; 65352cdd6eaSMark } 65452cdd6eaSMark temp1[0] *= wi; 65552cdd6eaSMark temp1[1] *= wi; 65652cdd6eaSMark #if LANDAU_DIM == 3 65752cdd6eaSMark temp1[2] *= wi; 65852cdd6eaSMark #endif 65952cdd6eaSMark temp2 *= wi; 66052cdd6eaSMark #if LANDAU_DIM == 2 66152cdd6eaSMark for (d2 = 0; d2 < 2; d2++) { 662e0eea495SMark for (d3 = 0; d3 < 2; ++d3) { 663e0eea495SMark /* K = U * grad(f): g2=e: i,A */ 66452cdd6eaSMark ggg.gg2[d2] += Uk[d2][d3] * temp1[d3]; 665e0eea495SMark /* D = -U * (I \kron (fx)): g3=f: i,j,A */ 66652cdd6eaSMark ggg.gg3[d2][d3] += Ud[d2][d3] * temp2; 667e0eea495SMark } 668e0eea495SMark } 669e0eea495SMark #else 670e0eea495SMark for (d2 = 0; d2 < 3; ++d2) { 671e0eea495SMark for (d3 = 0; d3 < 3; ++d3) { 672e0eea495SMark /* K = U * grad(f): g2 = e: i,A */ 67352cdd6eaSMark ggg.gg2[d2] += U[d2][d3]*temp1[d3]; 674e0eea495SMark /* D = -U * (I \kron (fx)): g3 = f: i,j,A */ 67552cdd6eaSMark ggg.gg3[d2][d3] += U[d2][d3]*temp2; 676e0eea495SMark } 677e0eea495SMark } 678e0eea495SMark #endif 6799371c9d4SSatish Balay }, 6809371c9d4SSatish Balay Kokkos::Sum<landau_inner_red::TensorValueType>(gg_temp)); 68152cdd6eaSMark // add alpha and put in gg2/3 6828fdabdddSMark Adams Kokkos::parallel_for(Kokkos::ThreadVectorRange(team, (int)loc_Nf), [&](const int &fieldA) { 68352cdd6eaSMark PetscInt d2, d3; 68452cdd6eaSMark for (d2 = 0; d2 < dim; d2++) { 6858a6f2e61SMark Adams gg2(d2, fieldA, myQi) = gg_temp.gg2[d2] * d_alpha[fieldA + f_off]; 686ad540459SPierre Jolivet for (d3 = 0; d3 < dim; d3++) gg3(d2, d3, fieldA, myQi) = -gg_temp.gg3[d2][d3] * d_alpha[fieldA + f_off] * d_invMass[fieldA + f_off]; 68752cdd6eaSMark } 688e0eea495SMark }); 68952cdd6eaSMark /* add electric field term once per IP */ 6909371c9d4SSatish Balay Kokkos::parallel_for(Kokkos::ThreadVectorRange(team, (int)loc_Nf), [&](const int &fieldA) { gg2(dim - 1, fieldA, myQi) += d_Eq_m[fieldA + f_off]; }); 6918fdabdddSMark Adams Kokkos::parallel_for(Kokkos::ThreadVectorRange(team, (int)loc_Nf), [=](const int &fieldA) { 692e0eea495SMark int d, d2, d3, dp; 693e0eea495SMark /* Jacobian transform - g2, g3 - per thread (2D) */ 694e0eea495SMark for (d = 0; d < dim; ++d) { 69552cdd6eaSMark g2(d, fieldA, myQi) = 0; 696e0eea495SMark for (d2 = 0; d2 < dim; ++d2) { 6978fdabdddSMark Adams g2(d, fieldA, myQi) += invJ[d * dim + d2] * gg2(d2, fieldA, myQi); 69852cdd6eaSMark g3(d, d2, fieldA, myQi) = 0; 699e0eea495SMark for (d3 = 0; d3 < dim; ++d3) { 700ad540459SPierre Jolivet for (dp = 0; dp < dim; ++dp) g3(d, d2, fieldA, myQi) += invJ[d * dim + d3] * gg3(d3, dp, fieldA, myQi) * invJ[d2 * dim + dp]; 701e0eea495SMark } 70252cdd6eaSMark g3(d, d2, fieldA, myQi) *= wj; 703e0eea495SMark } 70452cdd6eaSMark g2(d, fieldA, myQi) *= wj; 705e0eea495SMark } 706e0eea495SMark }); 70752cdd6eaSMark }); // Nq 708e0eea495SMark team.team_barrier(); 7091eec90e4SMark Adams { /* assemble */ 7108fdabdddSMark Adams for (PetscInt fieldA = 0; fieldA < loc_Nf; fieldA++) { 711930e68a5SMark Adams /* assemble */ 7121eec90e4SMark Adams Kokkos::parallel_for(Kokkos::TeamThreadRange(team, 0, Nb), [=](int f) { 7131eec90e4SMark Adams Kokkos::parallel_for(Kokkos::ThreadVectorRange(team, 0, Nb), [=](int g) { 7141eec90e4SMark Adams PetscScalar t = 0; 7151eec90e4SMark Adams for (int qj = 0; qj < Nq; qj++) { // look at others integration points 716e0eea495SMark const PetscReal *BJq = &d_BB[qj * Nb], *DIq = &d_DD[qj * Nb * dim]; 7171eec90e4SMark Adams for (int d = 0; d < dim; ++d) { 7181eec90e4SMark Adams t += DIq[f * dim + d] * g2(d, fieldA, qj) * BJq[g]; 719ad540459SPierre Jolivet for (int d2 = 0; d2 < dim; ++d2) t += DIq[f * dim + d] * g3(d, d2, fieldA, qj) * DIq[g * dim + d2]; 720e0eea495SMark } 721930e68a5SMark Adams } 7228a6f2e61SMark Adams if (elem_mat_num_cells_max_grid) { // CPU assembly 723bfbbad94Smarkadams4 #ifdef LAND_SUPPORT_CPU_ASS 7241eec90e4SMark Adams const PetscInt fOff = (fieldA * Nb + f) * totDim + fieldA * Nb + g; 7258fdabdddSMark Adams d_elem_mats(b_id, grid, loc_elem, fOff) = t; 726bfbbad94Smarkadams4 #endif 72719be780dSMark Adams } else { 728cada7fc7SMark Adams landau_mat_assemble(d_mat, d_coo_vals, t, f, g, Nb, moffset, loc_elem, fieldA, maps[grid], d_coo_elem_offsets, d_coo_elem_fullNb, d_coo_elem_point_offsets, b_elem_idx, b_id * coo_sz_batch); 72919be780dSMark Adams } 7301eec90e4SMark Adams }); 7311eec90e4SMark Adams }); 7321eec90e4SMark Adams } 733a587d139SMark } 73419be780dSMark Adams } // scope with 'grid' 73581451871SMark Adams }; 7369566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(events[4], 0, 0, 0, 0)); 7379566063dSJacob Faibussowitsch PetscCall(PetscLogGpuTimeBegin()); 738d9008a5dSMark Adams PetscCall(PetscInfo(plex[0], "Jacobian shared memory size: %d bytes in level %s (max shared=%d), num cells total=%d, team size=%d, vector size=%d, #face=%d, Nf_max=%d\n", jac_scr_bytes, jac_shared_level == 0 ? "local" : "global", maximum_shared_mem_size, num_cells_batch * batch_sz, team_size, vector_size, nfaces, Nf_max)); 739d9008a5dSMark Adams Kokkos::parallel_for("Jacobian", Kokkos::TeamPolicy<>(num_cells_batch * batch_sz, team_size, vector_size).set_scratch_size(jac_shared_level, Kokkos::PerTeam(jac_scr_bytes)), jac_lambda); // Kokkos::LaunchBounds<512,2> 740d9008a5dSMark Adams Kokkos::fence(); 7419566063dSJacob Faibussowitsch PetscCall(PetscLogGpuTimeEnd()); 7429566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(events[4], 0, 0, 0, 0)); 74319be780dSMark Adams if (d_vertex_f_k) delete d_vertex_f_k; 744dbabbaf5SMark Adams } else { // mass 7459566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(events[16], 0, 0, 0, 0)); 7469566063dSJacob Faibussowitsch PetscCall(PetscLogGpuTimeBegin()); 747dbabbaf5SMark Adams PetscCall(PetscInfo(plex[0], "Mass team size=%d vector size=%d #face=%d Nb=%" PetscInt_FMT ", %s assembly\n", team_size, vector_size, nfaces, Nb, d_coo_vals ? "COO" : "CSR")); 7489371c9d4SSatish Balay Kokkos::parallel_for( 7499371c9d4SSatish Balay "Mass", Kokkos::TeamPolicy<>(num_cells_batch * batch_sz, team_size, vector_size), KOKKOS_LAMBDA(const team_member team) { // Kokkos::LaunchBounds<512,4> 7508fdabdddSMark Adams const PetscInt b_Nelem = d_elem_offset[num_grids], b_elem_idx = team.league_rank() % b_Nelem, b_id = team.league_rank() / b_Nelem; 7518a6f2e61SMark Adams // find my grid 7528fdabdddSMark Adams PetscInt grid = 0; 7538fdabdddSMark Adams while (b_elem_idx >= d_elem_offset[grid + 1]) grid++; 7548a6f2e61SMark Adams { 755bfbbad94Smarkadams4 const PetscInt loc_Nf = d_species_offset[grid + 1] - d_species_offset[grid], loc_elem = b_elem_idx - d_elem_offset[grid], jpidx_0 = d_ip_offset[grid] + loc_elem * Nq; 756bfbbad94Smarkadams4 #ifdef LAND_SUPPORT_CPU_ASS 757bfbbad94Smarkadams4 const PetscInt totDim = loc_Nf * Nq; 758bfbbad94Smarkadams4 #endif 7598fdabdddSMark Adams const PetscInt moffset = LAND_MOFFSET(b_id, grid, batch_sz, num_grids, d_mat_offset); 7608fdabdddSMark Adams for (int fieldA = 0; fieldA < loc_Nf; fieldA++) { 7611eec90e4SMark Adams /* assemble */ 7621eec90e4SMark Adams Kokkos::parallel_for(Kokkos::TeamThreadRange(team, 0, Nb), [=](int f) { 7631eec90e4SMark Adams Kokkos::parallel_for(Kokkos::ThreadVectorRange(team, 0, Nb), [=](int g) { 7641eec90e4SMark Adams PetscScalar t = 0; 7651eec90e4SMark Adams for (int qj = 0; qj < Nq; qj++) { // look at others integration points 7661eec90e4SMark Adams const PetscReal *BJq = &d_BB[qj * Nb]; 7678fdabdddSMark Adams const PetscInt jpidx_glb = jpidx_0 + qj; 7688a6f2e61SMark Adams if (dim == 2) { 7698fdabdddSMark Adams t += BJq[f] * d_w_k(jpidx_glb) * shift * BJq[g] * 2. * PETSC_PI; 7708a6f2e61SMark Adams } else { 7718fdabdddSMark Adams t += BJq[f] * d_w_k(jpidx_glb) * shift * BJq[g]; 7721eec90e4SMark Adams } 7738a6f2e61SMark Adams } 7748a6f2e61SMark Adams if (elem_mat_num_cells_max_grid) { 775bfbbad94Smarkadams4 #ifdef LAND_SUPPORT_CPU_ASS 7761eec90e4SMark Adams const PetscInt fOff = (fieldA * Nb + f) * totDim + fieldA * Nb + g; 7778fdabdddSMark Adams d_elem_mats(b_id, grid, loc_elem, fOff) = t; 778bfbbad94Smarkadams4 #endif 779ad4b5651SMark Adams } else { 780cada7fc7SMark Adams landau_mat_assemble(d_mat, d_coo_vals, t, f, g, Nb, moffset, loc_elem, fieldA, maps[grid], d_coo_elem_offsets, d_coo_elem_fullNb, d_coo_elem_point_offsets, b_elem_idx, b_id * coo_sz_batch); 781ad4b5651SMark Adams } 782e0eea495SMark }); 783e0eea495SMark }); 78413241b68SMark Adams } // field 78513241b68SMark Adams } // grid 7861eec90e4SMark Adams }); 787d9008a5dSMark Adams Kokkos::fence(); 7889566063dSJacob Faibussowitsch PetscCall(PetscLogGpuTimeEnd()); 7899566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(events[16], 0, 0, 0, 0)); 7901eec90e4SMark Adams } 791bfc784b7SMark Adams if (d_coo_vals) { 7929566063dSJacob Faibussowitsch PetscCall(MatSetValuesCOO(JacP, d_coo_vals, ADD_VALUES)); 793bfbbad94Smarkadams4 #ifndef LAND_SUPPORT_CPU_ASS 794bfbbad94Smarkadams4 Kokkos::fence(); // for timers 795bfbbad94Smarkadams4 #endif 796bfc784b7SMark Adams } else if (elem_mat_num_cells_max_grid) { // CPU assembly 797bfbbad94Smarkadams4 #ifdef LAND_SUPPORT_CPU_ASS 7988fdabdddSMark Adams Kokkos::View<PetscScalar ****, Kokkos::LayoutRight>::HostMirror h_elem_mats = Kokkos::create_mirror_view(d_elem_mats); 799e0eea495SMark Kokkos::deep_copy(h_elem_mats, d_elem_mats); 800d618d24fSMark Adams PetscCheck(!container, PETSC_COMM_SELF, PETSC_ERR_PLIB, "?????"); 8018fdabdddSMark Adams for (PetscInt b_id = 0; b_id < batch_sz; b_id++) { // OpenMP (once) 8028a6f2e61SMark Adams for (PetscInt grid = 0; grid < num_grids; grid++) { 8038a6f2e61SMark Adams PetscSection section, globalSection; 8048a6f2e61SMark Adams PetscInt cStart, cEnd; 8058fdabdddSMark Adams Mat B = subJ[LAND_PACK_IDX(b_id, grid)]; 8068fdabdddSMark Adams PetscInt moffset = LAND_MOFFSET(b_id, grid, batch_sz, num_grids, a_mat_offset), nloc, nzl, colbuf[1024], row; 8078fdabdddSMark Adams const PetscInt *cols; 8088fdabdddSMark Adams const PetscScalar *vals; 8099566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(events[5], 0, 0, 0, 0)); 8109566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(plex[grid], 0, &cStart, &cEnd)); 8119566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(plex[grid], §ion)); 8129566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(plex[grid], &globalSection)); 8139566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(events[5], 0, 0, 0, 0)); 8149566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(events[6], 0, 0, 0, 0)); 8158a6f2e61SMark Adams for (PetscInt ej = cStart; ej < cEnd; ++ej) { 8168fdabdddSMark Adams const PetscScalar *elMat = &h_elem_mats(b_id, grid, ej - cStart, 0); 8179566063dSJacob Faibussowitsch PetscCall(DMPlexMatSetClosure(plex[grid], section, globalSection, B, ej, elMat, ADD_VALUES)); 8188a6f2e61SMark Adams if (grid == 0 && ej == -1) { 8198fdabdddSMark Adams const PetscInt loc_Nf = a_species_offset[grid + 1] - a_species_offset[grid], totDim = loc_Nf * Nq; 820e0eea495SMark int d, f; 8218a6f2e61SMark Adams PetscPrintf(PETSC_COMM_SELF, "Kokkos Element matrix %d/%d\n", 1, (int)a_numCells[grid]); 822e0eea495SMark for (d = 0; d < totDim; ++d) { 82352cdd6eaSMark for (f = 0; f < totDim; ++f) PetscPrintf(PETSC_COMM_SELF, " %12.5e", PetscRealPart(elMat[d * totDim + f])); 82452cdd6eaSMark PetscPrintf(PETSC_COMM_SELF, "\n"); 825e0eea495SMark } 826e8d2b73aSMark Adams exit(14); 827e0eea495SMark } 828e0eea495SMark } 8298fdabdddSMark Adams // move nest matrix to global JacP 8309566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 8319566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 8329566063dSJacob Faibussowitsch PetscCall(MatGetSize(B, &nloc, NULL)); 8338a6f2e61SMark Adams for (int i = 0; i < nloc; i++) { 8349566063dSJacob Faibussowitsch PetscCall(MatGetRow(B, i, &nzl, &cols, &vals)); 83563a3b9bcSJacob Faibussowitsch PetscCheck(nzl <= 1024, PetscObjectComm((PetscObject)B), PETSC_ERR_PLIB, "Row too big: %" PetscInt_FMT, nzl); 8368a6f2e61SMark Adams for (int j = 0; j < nzl; j++) colbuf[j] = cols[j] + moffset; 8378a6f2e61SMark Adams row = i + moffset; 8389566063dSJacob Faibussowitsch PetscCall(MatSetValues(JacP, 1, &row, nzl, colbuf, vals, ADD_VALUES)); 8399566063dSJacob Faibussowitsch PetscCall(MatRestoreRow(B, i, &nzl, &cols, &vals)); 8408a6f2e61SMark Adams } 8419566063dSJacob Faibussowitsch PetscCall(MatDestroy(&subJ[LAND_PACK_IDX(b_id, grid)])); 8429566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(events[6], 0, 0, 0, 0)); 8438a6f2e61SMark Adams } // grids 844a587d139SMark } 845bfbbad94Smarkadams4 #else 846bfbbad94Smarkadams4 SETERRQ(PETSC_COMM_SELF, PETSC_ERR_PLIB, "CPU assembly not supported"); 847bfbbad94Smarkadams4 #endif 8488fdabdddSMark Adams } 849e0eea495SMark PetscFunctionReturn(0); 850e0eea495SMark } 851e0eea495SMark } // extern "C" 852