1e0eea495SMark /* 2e0eea495SMark Implements the Kokkos kernel 3e0eea495SMark */ 4e0eea495SMark #include <petscconf.h> 511d22bbfSJunchao Zhang #include <petscvec_kokkos.hpp> 6e0eea495SMark #include <petsc/private/dmpleximpl.h> /*I "petscdmplex.h" I*/ 7e0eea495SMark #include <petsclandau.h> 8e0eea495SMark #include <petscts.h> 9a587d139SMark 10e0eea495SMark #include <Kokkos_Core.hpp> 11e0eea495SMark #include <cstdio> 12e0eea495SMark typedef Kokkos::TeamPolicy<>::member_type team_member; 13e0eea495SMark #include "../land_tensors.h" 14a587d139SMark #include <petscaijdevice.h> 15e0eea495SMark 16e0eea495SMark namespace landau_inner_red { // namespace helps with name resolution in reduction identity 1752cdd6eaSMark template< class ScalarType > 18e0eea495SMark struct array_type { 1952cdd6eaSMark ScalarType gg2[LANDAU_DIM]; 2052cdd6eaSMark ScalarType gg3[LANDAU_DIM][LANDAU_DIM]; 21e0eea495SMark 22e0eea495SMark KOKKOS_INLINE_FUNCTION // Default constructor - Initialize to 0's 23e0eea495SMark array_type() { 24e0eea495SMark for (int j = 0; j < LANDAU_DIM; j++) { 2552cdd6eaSMark gg2[j] = 0; 26e0eea495SMark for (int k = 0; k < LANDAU_DIM; k++) { 2752cdd6eaSMark gg3[j][k] = 0; 28e0eea495SMark } 29e0eea495SMark } 30e0eea495SMark } 31e0eea495SMark KOKKOS_INLINE_FUNCTION // Copy Constructor 32e0eea495SMark array_type(const array_type & rhs) { 33e0eea495SMark for (int j = 0; j < LANDAU_DIM; j++) { 3452cdd6eaSMark gg2[j] = rhs.gg2[j]; 35e0eea495SMark for (int k = 0; k < LANDAU_DIM; k++) { 3652cdd6eaSMark gg3[j][k] = rhs.gg3[j][k]; 37e0eea495SMark } 38e0eea495SMark } 39e0eea495SMark } 40e0eea495SMark KOKKOS_INLINE_FUNCTION // add operator 4170a7d78aSStefano Zampini array_type& operator += (const array_type& src) 4270a7d78aSStefano Zampini { 43e0eea495SMark for (int j = 0; j < LANDAU_DIM; j++) { 4452cdd6eaSMark gg2[j] += src.gg2[j]; 45e0eea495SMark for (int k = 0; k < LANDAU_DIM; k++) { 4652cdd6eaSMark gg3[j][k] += src.gg3[j][k]; 47e0eea495SMark } 48e0eea495SMark } 49e0eea495SMark return *this; 50e0eea495SMark } 51e0eea495SMark KOKKOS_INLINE_FUNCTION // volatile add operator 5270a7d78aSStefano Zampini void operator += (const volatile array_type& src) volatile 5370a7d78aSStefano Zampini { 54e0eea495SMark for (int j = 0; j < LANDAU_DIM; j++) { 5552cdd6eaSMark gg2[j] += src.gg2[j]; 56e0eea495SMark for (int k = 0; k < LANDAU_DIM; k++) { 5752cdd6eaSMark gg3[j][k] += src.gg3[j][k]; 58e0eea495SMark } 59e0eea495SMark } 60e0eea495SMark } 61e0eea495SMark }; 6252cdd6eaSMark typedef array_type<PetscReal> TensorValueType; // used to simplify code below 63e0eea495SMark } 64e0eea495SMark 65e0eea495SMark namespace Kokkos { //reduction identity must be defined in Kokkos namespace 66e0eea495SMark template<> 6752cdd6eaSMark struct reduction_identity< landau_inner_red::TensorValueType > { 6852cdd6eaSMark KOKKOS_FORCEINLINE_FUNCTION static landau_inner_red::TensorValueType sum() { 6952cdd6eaSMark return landau_inner_red::TensorValueType(); 70e0eea495SMark } 71e0eea495SMark }; 72e0eea495SMark } 73e0eea495SMark 74e0eea495SMark extern "C" { 758a6f2e61SMark Adams PetscErrorCode LandauKokkosCreateMatMaps(P4estVertexMaps maps[], pointInterpolationP4est (*pointMaps)[LANDAU_MAX_Q_FACE], PetscInt Nf[], PetscInt Nq, PetscInt grid) 76a587d139SMark { 77a587d139SMark P4estVertexMaps h_maps; /* host container */ 788a6f2e61SMark Adams const Kokkos::View<pointInterpolationP4est*[LANDAU_MAX_Q_FACE], Kokkos::LayoutRight, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_points ((pointInterpolationP4est*)pointMaps, maps[grid].num_reduced); 798a6f2e61SMark Adams const Kokkos::View< LandauIdx*[LANDAU_MAX_SPECIES][LANDAU_MAX_NQ], Kokkos::LayoutRight, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_gidx ((LandauIdx*)maps[grid].gIdx, maps[grid].num_elements); 808a6f2e61SMark Adams Kokkos::View<pointInterpolationP4est*[LANDAU_MAX_Q_FACE], Kokkos::LayoutRight> *d_points = new Kokkos::View<pointInterpolationP4est*[LANDAU_MAX_Q_FACE], Kokkos::LayoutRight>("points", maps[grid].num_reduced); 818a6f2e61SMark Adams Kokkos::View<LandauIdx*[LANDAU_MAX_SPECIES][LANDAU_MAX_NQ], Kokkos::LayoutRight> *d_gidx = new Kokkos::View<LandauIdx*[LANDAU_MAX_SPECIES][LANDAU_MAX_NQ], Kokkos::LayoutRight>("gIdx", maps[grid].num_elements); 82a587d139SMark 83a587d139SMark PetscFunctionBegin; 84a587d139SMark Kokkos::deep_copy (*d_gidx, h_gidx); 85a587d139SMark Kokkos::deep_copy (*d_points, h_points); 868a6f2e61SMark Adams h_maps.num_elements = maps[grid].num_elements; 878a6f2e61SMark Adams h_maps.num_face = maps[grid].num_face; 888a6f2e61SMark Adams h_maps.num_reduced = maps[grid].num_reduced; 898a6f2e61SMark Adams h_maps.deviceType = maps[grid].deviceType; 908a6f2e61SMark Adams h_maps.numgrids = maps[grid].numgrids; 918a6f2e61SMark Adams h_maps.Nf = Nf[grid]; 92a587d139SMark h_maps.c_maps = (pointInterpolationP4est (*)[LANDAU_MAX_Q_FACE]) d_points->data(); 938a6f2e61SMark Adams maps[grid].vp1 = (void*)d_points; 94a587d139SMark h_maps.gIdx = (LandauIdx (*)[LANDAU_MAX_SPECIES][LANDAU_MAX_NQ]) d_gidx->data(); 958a6f2e61SMark Adams maps[grid].vp2 = (void*)d_gidx; 96a587d139SMark { 97a587d139SMark Kokkos::View<P4estVertexMaps, Kokkos::HostSpace> h_maps_k(&h_maps); 9811d22bbfSJunchao Zhang Kokkos::View<P4estVertexMaps> *d_maps_k = new Kokkos::View<P4estVertexMaps>(Kokkos::create_mirror(Kokkos::DefaultExecutionSpace::memory_space(),h_maps_k)); 99a587d139SMark Kokkos::deep_copy (*d_maps_k, h_maps_k); 1008a6f2e61SMark Adams maps[grid].d_self = d_maps_k->data(); 1018a6f2e61SMark Adams maps[grid].vp3 = (void*)d_maps_k; 102a587d139SMark } 103a587d139SMark PetscFunctionReturn(0); 104a587d139SMark } 1058a6f2e61SMark Adams PetscErrorCode LandauKokkosDestroyMatMaps(P4estVertexMaps maps[], PetscInt num_grids) 106a587d139SMark { 107362febeeSStefano Zampini PetscFunctionBegin; 1088a6f2e61SMark Adams for (PetscInt grid=0;grid<num_grids;grid++) { 1098a6f2e61SMark Adams auto a = static_cast<Kokkos::View<pointInterpolationP4est*[LANDAU_MAX_Q_FACE], Kokkos::LayoutRight>*>(maps[grid].vp1); 1108a6f2e61SMark Adams auto b = static_cast<Kokkos::View<LandauIdx*[LANDAU_MAX_SPECIES][LANDAU_MAX_NQ], Kokkos::LayoutRight>*>(maps[grid].vp2); 1118a6f2e61SMark Adams auto c = static_cast<Kokkos::View<P4estVertexMaps*>*>(maps[grid].vp3); 112a587d139SMark delete a; delete b; delete c; 1138a6f2e61SMark Adams } 114a587d139SMark PetscFunctionReturn(0); 115a587d139SMark } 116a587d139SMark 1178fdabdddSMark Adams PetscErrorCode LandauKokkosStaticDataSet(DM plex, const PetscInt Nq, const PetscInt batch_sz, const PetscInt num_grids, 1188fdabdddSMark Adams PetscInt a_numCells[], PetscInt a_species_offset[], PetscInt a_mat_offset[], 1198a6f2e61SMark Adams PetscReal a_nu_alpha[], PetscReal a_nu_beta[], PetscReal a_invMass[], PetscReal a_invJ[], 1208a6f2e61SMark Adams PetscReal a_x[], PetscReal a_y[], PetscReal a_z[], PetscReal a_w[], LandauStaticData *SData_d) 121e0eea495SMark { 122e0eea495SMark PetscReal *BB,*DD; 123e8d2b73aSMark Adams PetscTabulation *Tf; 1248a6f2e61SMark Adams PetscInt dim; 1258a6f2e61SMark Adams PetscInt Nb=Nq,ip_offset[LANDAU_MAX_GRIDS+1],ipf_offset[LANDAU_MAX_GRIDS+1],elem_offset[LANDAU_MAX_GRIDS+1],nip,IPf_sz,Nftot; 126e8d2b73aSMark Adams PetscDS prob; 127e0eea495SMark 128e0eea495SMark PetscFunctionBegin; 1299566063dSJacob Faibussowitsch PetscCall(DMGetDimension(plex, &dim)); 1309566063dSJacob Faibussowitsch PetscCall(DMGetDS(plex, &prob)); 13163a3b9bcSJacob Faibussowitsch PetscCheck(LANDAU_DIM == dim,PETSC_COMM_WORLD, PETSC_ERR_PLIB, "dim %" PetscInt_FMT " != LANDAU_DIM %d",dim,LANDAU_DIM); 1329566063dSJacob Faibussowitsch PetscCall(PetscDSGetTabulation(prob, &Tf)); 133e8d2b73aSMark Adams BB = Tf[0]->T[0]; DD = Tf[0]->T[1]; 1348a6f2e61SMark Adams ip_offset[0] = ipf_offset[0] = elem_offset[0] = 0; 1358a6f2e61SMark Adams nip = 0; 1368a6f2e61SMark Adams IPf_sz = 0; 1378a6f2e61SMark Adams for (PetscInt grid=0 ; grid<num_grids ; grid++) { 1388a6f2e61SMark Adams PetscInt nfloc = a_species_offset[grid+1] - a_species_offset[grid]; 1398a6f2e61SMark Adams elem_offset[grid+1] = elem_offset[grid] + a_numCells[grid]; 1408a6f2e61SMark Adams nip += a_numCells[grid]*Nq; 1418a6f2e61SMark Adams ip_offset[grid+1] = nip; 1428a6f2e61SMark Adams IPf_sz += Nq*nfloc*a_numCells[grid]; 1438a6f2e61SMark Adams ipf_offset[grid+1] = IPf_sz; 1448a6f2e61SMark Adams } 1458a6f2e61SMark Adams Nftot = a_species_offset[num_grids]; 1469566063dSJacob Faibussowitsch PetscCall(PetscKokkosInitializeCheck()); 147e8d2b73aSMark Adams { 1488a6f2e61SMark Adams const Kokkos::View<PetscReal*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_alpha (a_nu_alpha, Nftot); 1498a6f2e61SMark Adams auto alpha = new Kokkos::View<PetscReal*, Kokkos::LayoutLeft> ("alpha", Nftot); 150e8d2b73aSMark Adams SData_d->alpha = static_cast<void*>(alpha); 1518a6f2e61SMark Adams const Kokkos::View<PetscReal*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_beta (a_nu_beta, Nftot); 1528a6f2e61SMark Adams auto beta = new Kokkos::View<PetscReal*, Kokkos::LayoutLeft> ("beta", Nftot); 153e8d2b73aSMark Adams SData_d->beta = static_cast<void*>(beta); 1548a6f2e61SMark Adams const Kokkos::View<PetscReal*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_invMass (a_invMass,Nftot); 1558a6f2e61SMark Adams auto invMass = new Kokkos::View<PetscReal*, Kokkos::LayoutLeft> ("invMass", Nftot); 156e8d2b73aSMark Adams SData_d->invMass = static_cast<void*>(invMass); 157e8d2b73aSMark Adams const Kokkos::View<PetscReal*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_BB (BB,Nq*Nb); 158e8d2b73aSMark Adams auto B = new Kokkos::View<PetscReal*, Kokkos::LayoutLeft> ("B", Nq*Nb); 159e8d2b73aSMark Adams SData_d->B = static_cast<void*>(B); 160e8d2b73aSMark Adams const Kokkos::View<PetscReal*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_DD (DD,Nq*Nb*dim); 161e8d2b73aSMark Adams auto D = new Kokkos::View<PetscReal*, Kokkos::LayoutLeft> ("D", Nq*Nb*dim); 162e8d2b73aSMark Adams SData_d->D = static_cast<void*>(D); 163e8d2b73aSMark Adams const Kokkos::View<PetscReal*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_invJ (a_invJ, nip*dim*dim); 164e8d2b73aSMark Adams auto invJ = new Kokkos::View<PetscReal*, Kokkos::LayoutLeft> ("invJ", nip*dim*dim); 165e8d2b73aSMark Adams SData_d->invJ = static_cast<void*>(invJ); 166e8d2b73aSMark Adams const Kokkos::View<PetscReal*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_x (a_x, nip); 167e8d2b73aSMark Adams auto x = new Kokkos::View<PetscReal*, Kokkos::LayoutLeft> ("x", nip); 168e8d2b73aSMark Adams SData_d->x = static_cast<void*>(x); 169e8d2b73aSMark Adams const Kokkos::View<PetscReal*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_y (a_y, nip); 170e8d2b73aSMark Adams auto y = new Kokkos::View<PetscReal*, Kokkos::LayoutLeft> ("y", nip); 171e8d2b73aSMark Adams SData_d->y = static_cast<void*>(y); 172e8d2b73aSMark Adams const Kokkos::View<PetscReal*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_w (a_w, nip); 173e8d2b73aSMark Adams auto w = new Kokkos::View<PetscReal*, Kokkos::LayoutLeft> ("w", nip); 174e8d2b73aSMark Adams SData_d->w = static_cast<void*>(w); 175e8d2b73aSMark Adams 176e8d2b73aSMark Adams Kokkos::deep_copy (*alpha, h_alpha); 177e8d2b73aSMark Adams Kokkos::deep_copy (*beta, h_beta); 178e8d2b73aSMark Adams Kokkos::deep_copy (*invMass, h_invMass); 179e8d2b73aSMark Adams Kokkos::deep_copy (*B, h_BB); 180e8d2b73aSMark Adams Kokkos::deep_copy (*D, h_DD); 181e8d2b73aSMark Adams Kokkos::deep_copy (*invJ, h_invJ); 182e8d2b73aSMark Adams Kokkos::deep_copy (*x, h_x); 183e8d2b73aSMark Adams Kokkos::deep_copy (*y, h_y); 184e8d2b73aSMark Adams Kokkos::deep_copy (*w, h_w); 185e8d2b73aSMark Adams 1868a6f2e61SMark Adams if (dim==3) { 187984ed092SMark Adams const Kokkos::View<PetscReal*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_z (a_z , nip); 1888a6f2e61SMark Adams auto z = new Kokkos::View<PetscReal*, Kokkos::LayoutLeft> ("z", nip); 1898a6f2e61SMark Adams SData_d->z = static_cast<void*>(z); 1908a6f2e61SMark Adams Kokkos::deep_copy (*z, h_z); 1918a6f2e61SMark Adams } else SData_d->z = NULL; 1928a6f2e61SMark Adams 1938a6f2e61SMark Adams // 1948a6f2e61SMark Adams const Kokkos::View<PetscInt*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_NCells (a_numCells, num_grids); 1958a6f2e61SMark Adams auto nc = new Kokkos::View<PetscInt*, Kokkos::LayoutLeft> ("NCells",num_grids); 1968a6f2e61SMark Adams SData_d->NCells = static_cast<void*>(nc); 1978a6f2e61SMark Adams Kokkos::deep_copy (*nc, h_NCells); 1988a6f2e61SMark Adams 1998a6f2e61SMark Adams const Kokkos::View<PetscInt*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_species_offset (a_species_offset, num_grids+1); 2008a6f2e61SMark Adams auto soff = new Kokkos::View<PetscInt*, Kokkos::LayoutLeft> ("species_offset",num_grids+1); 2018a6f2e61SMark Adams SData_d->species_offset = static_cast<void*>(soff); 2028a6f2e61SMark Adams Kokkos::deep_copy (*soff, h_species_offset); 2038a6f2e61SMark Adams 2048a6f2e61SMark Adams const Kokkos::View<PetscInt*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_mat_offset (a_mat_offset, num_grids+1); 2058a6f2e61SMark Adams auto moff = new Kokkos::View<PetscInt*, Kokkos::LayoutLeft> ("mat_offset",num_grids+1); 2068a6f2e61SMark Adams SData_d->mat_offset = static_cast<void*>(moff); 2078a6f2e61SMark Adams Kokkos::deep_copy (*moff, h_mat_offset); 2088a6f2e61SMark Adams 2098a6f2e61SMark Adams const Kokkos::View<PetscInt*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_ip_offset (ip_offset, num_grids+1); 2108a6f2e61SMark Adams auto ipoff = new Kokkos::View<PetscInt*, Kokkos::LayoutLeft> ("ip_offset",num_grids+1); 2118a6f2e61SMark Adams SData_d->ip_offset = static_cast<void*>(ipoff); 2128a6f2e61SMark Adams Kokkos::deep_copy (*ipoff, h_ip_offset); 2138a6f2e61SMark Adams 2148a6f2e61SMark Adams const Kokkos::View<PetscInt*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_elem_offset (elem_offset, num_grids+1); 2158a6f2e61SMark Adams auto eoff = new Kokkos::View<PetscInt*, Kokkos::LayoutLeft> ("elem_offset",num_grids+1); 2168a6f2e61SMark Adams SData_d->elem_offset = static_cast<void*>(eoff); 2178a6f2e61SMark Adams Kokkos::deep_copy (*eoff, h_elem_offset); 2188a6f2e61SMark Adams 2198a6f2e61SMark Adams const Kokkos::View<PetscInt*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_ipf_offset (ipf_offset, num_grids+1); 2208a6f2e61SMark Adams auto ipfoff = new Kokkos::View<PetscInt*, Kokkos::LayoutLeft> ("ipf_offset",num_grids+1); 2218a6f2e61SMark Adams SData_d->ipf_offset = static_cast<void*>(ipfoff); 2228a6f2e61SMark Adams Kokkos::deep_copy (*ipfoff, h_ipf_offset); 2238a6f2e61SMark Adams #if defined(LANDAU_LAYOUT_LEFT) // preallocate dynamic data, no copy 2248fdabdddSMark Adams auto ipfdf_data = new Kokkos::View<PetscReal***, Kokkos::LayoutLeft > ("fdf", batch_sz, dim+1, IPf_sz); 2258a6f2e61SMark Adams #else 2268fdabdddSMark Adams auto ipfdf_data = new Kokkos::View<PetscReal***, Kokkos::LayoutRight > ("fdf",batch_sz, dim+1, IPf_sz); 2278a6f2e61SMark Adams #endif 2288a6f2e61SMark Adams SData_d->ipfdf_data = static_cast<void*>(ipfdf_data); 2298fdabdddSMark Adams auto Eq_m = new Kokkos::View<PetscReal*, Kokkos::LayoutLeft> ("Eq_m",Nftot); // allocate but do not set, same for whole batch 230e8d2b73aSMark Adams SData_d->Eq_m = static_cast<void*>(Eq_m); 231cada7fc7SMark Adams const Kokkos::View<LandauIdx*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_coo_elem_offsets ((LandauIdx*)SData_d->coo_elem_offsets, SData_d->coo_n_cellsTot+1); 232cada7fc7SMark Adams auto coo_elem_offsets = new Kokkos::View<LandauIdx*, Kokkos::LayoutLeft> ("coo_elem_offsets",SData_d->coo_n_cellsTot+1); 233cada7fc7SMark Adams const Kokkos::View<LandauIdx*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_coo_elem_fullNb ((LandauIdx*)SData_d->coo_elem_fullNb, SData_d->coo_n_cellsTot); 234cada7fc7SMark Adams auto coo_elem_fullNb = new Kokkos::View<LandauIdx*, Kokkos::LayoutLeft> ("coo_elem_offsets",SData_d->coo_n_cellsTot); 235cada7fc7SMark Adams const Kokkos::View<LandauIdx*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_coo_elem_point_offsets ((LandauIdx*)SData_d->coo_elem_point_offsets, SData_d->coo_n_cellsTot*(LANDAU_MAX_NQ+1)); 236cada7fc7SMark Adams auto coo_elem_point_offsets = new Kokkos::View<LandauIdx*, Kokkos::LayoutLeft> ("coo_elem_point_offsets",SData_d->coo_n_cellsTot*(LANDAU_MAX_NQ+1)); 237bfc784b7SMark Adams // assign & copy 238bfc784b7SMark Adams Kokkos::deep_copy (*coo_elem_offsets, h_coo_elem_offsets); 239bfc784b7SMark Adams Kokkos::deep_copy (*coo_elem_fullNb, h_coo_elem_fullNb); 240bfc784b7SMark Adams Kokkos::deep_copy (*coo_elem_point_offsets, h_coo_elem_point_offsets); 241bfc784b7SMark Adams // need to free this now and use pointer space 2429566063dSJacob Faibussowitsch PetscCall(PetscFree3(SData_d->coo_elem_offsets,SData_d->coo_elem_fullNb,SData_d->coo_elem_point_offsets)); 243cada7fc7SMark Adams SData_d->coo_elem_offsets = static_cast<void*>(coo_elem_offsets); 244cada7fc7SMark Adams SData_d->coo_elem_fullNb = static_cast<void*>(coo_elem_fullNb); 245cada7fc7SMark Adams SData_d->coo_elem_point_offsets = static_cast<void*>(coo_elem_point_offsets); 246e8d2b73aSMark Adams } 2478a6f2e61SMark Adams SData_d->maps = NULL; // not used 248e8d2b73aSMark Adams PetscFunctionReturn(0); 249e8d2b73aSMark Adams } 250e8d2b73aSMark Adams 2518a6f2e61SMark Adams PetscErrorCode LandauKokkosStaticDataClear(LandauStaticData *SData_d) 252e8d2b73aSMark Adams { 253e8d2b73aSMark Adams PetscFunctionBegin; 254e8d2b73aSMark Adams if (SData_d->alpha) { 255e8d2b73aSMark Adams auto alpha = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->alpha); 256e8d2b73aSMark Adams delete alpha; 2578a6f2e61SMark Adams SData_d->alpha = NULL; 258e8d2b73aSMark Adams auto beta = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->beta); 259e8d2b73aSMark Adams delete beta; 260e8d2b73aSMark Adams auto invMass = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->invMass); 261e8d2b73aSMark Adams delete invMass; 262e8d2b73aSMark Adams auto B = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->B); 263e8d2b73aSMark Adams delete B; 264e8d2b73aSMark Adams auto D = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->D); 265e8d2b73aSMark Adams delete D; 266e8d2b73aSMark Adams auto invJ = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->invJ); 267e8d2b73aSMark Adams delete invJ; 268e8d2b73aSMark Adams auto x = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->x); 269e8d2b73aSMark Adams delete x; 270e8d2b73aSMark Adams auto y = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->y); 271e8d2b73aSMark Adams delete y; 2728a6f2e61SMark Adams if (SData_d->z) { 273e8d2b73aSMark Adams auto z = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->z); 274e8d2b73aSMark Adams delete z; 2758a6f2e61SMark Adams } 2768a6f2e61SMark Adams #if defined(LANDAU_LAYOUT_LEFT) // preallocate dynamic data, no copy 2778fdabdddSMark Adams auto z = static_cast<Kokkos::View<PetscReal***, Kokkos::LayoutLeft>*>(SData_d->ipfdf_data); 2788a6f2e61SMark Adams #else 2798fdabdddSMark Adams auto z = static_cast<Kokkos::View<PetscReal***, Kokkos::LayoutRight>*>(SData_d->ipfdf_data); 2808a6f2e61SMark Adams #endif 2818a6f2e61SMark Adams delete z; 282e8d2b73aSMark Adams auto w = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->w); 283e8d2b73aSMark Adams delete w; 284e8d2b73aSMark Adams auto Eq_m = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->Eq_m); 285e8d2b73aSMark Adams delete Eq_m; 2868a6f2e61SMark Adams // offset 2878a6f2e61SMark Adams auto nc = static_cast<Kokkos::View<PetscInt*, Kokkos::LayoutLeft>*>(SData_d->NCells); 2888a6f2e61SMark Adams delete nc; 2898a6f2e61SMark Adams auto soff = static_cast<Kokkos::View<PetscInt*, Kokkos::LayoutLeft>*>(SData_d->species_offset); 2908a6f2e61SMark Adams delete soff; 2918a6f2e61SMark Adams auto moff = static_cast<Kokkos::View<PetscInt*, Kokkos::LayoutLeft>*>(SData_d->mat_offset); 2928a6f2e61SMark Adams delete moff; 2938a6f2e61SMark Adams auto ipoff = static_cast<Kokkos::View<PetscInt*, Kokkos::LayoutLeft>*>(SData_d->ip_offset); 2948a6f2e61SMark Adams delete ipoff; 2958a6f2e61SMark Adams auto eoff = static_cast<Kokkos::View<PetscInt*, Kokkos::LayoutLeft>*>(SData_d->elem_offset); 2968a6f2e61SMark Adams delete eoff; 2978a6f2e61SMark Adams auto ipfoff = static_cast<Kokkos::View<PetscInt*, Kokkos::LayoutLeft>*>(SData_d->ipf_offset); 2988a6f2e61SMark Adams delete ipfoff; 299bfc784b7SMark Adams auto coo_elem_offsets = static_cast<Kokkos::View<LandauIdx*, Kokkos::LayoutLeft>*>((void*)SData_d->coo_elem_offsets); 300bfc784b7SMark Adams delete coo_elem_offsets; 301bfc784b7SMark Adams auto coo_elem_fullNb = static_cast<Kokkos::View<LandauIdx*, Kokkos::LayoutLeft>*>((void*)SData_d->coo_elem_fullNb); 302bfc784b7SMark Adams delete coo_elem_fullNb; 303cada7fc7SMark Adams auto coo_elem_point_offsets = static_cast<Kokkos::View<LandauIdx*, Kokkos::LayoutLeft>*>((void*)SData_d->coo_elem_point_offsets); 304bfc784b7SMark Adams delete coo_elem_point_offsets; 305bfc784b7SMark Adams SData_d->coo_elem_offsets = NULL; 306bfc784b7SMark Adams SData_d->coo_elem_point_offsets = NULL; 307bfc784b7SMark Adams SData_d->coo_elem_fullNb = NULL; 308af0767daSMark Adams } 309e8d2b73aSMark Adams PetscFunctionReturn(0); 310e8d2b73aSMark Adams } 311e8d2b73aSMark Adams 31259118022SMark Adams #define KOKKOS_SHARED_LEVEL 0 // 0 is shared, 1 is global 31359118022SMark Adams 3148a6f2e61SMark Adams KOKKOS_INLINE_FUNCTION 315bfc784b7SMark Adams PetscErrorCode landau_mat_assemble(PetscSplitCSRDataStructure d_mat, PetscScalar *coo_vals, const PetscScalar Aij, const PetscInt f, const PetscInt g, const PetscInt Nb, 316bfc784b7SMark Adams PetscInt moffset, const PetscInt elem, const PetscInt fieldA, const P4estVertexMaps *d_maps, 317cada7fc7SMark Adams const LandauIdx coo_elem_offsets[], const LandauIdx coo_elem_fullNb[], const LandauIdx (*coo_elem_point_offsets)[LANDAU_MAX_NQ+1], 318bfc784b7SMark Adams const PetscInt glb_elem_idx, const PetscInt bid_coo_sz_batch) 3198a6f2e61SMark Adams { 320ad4b5651SMark Adams PetscInt idx,q,nr,nc,d; 3218a6f2e61SMark Adams const LandauIdx *const Idxs = &d_maps->gIdx[elem][fieldA][0]; 322bfc784b7SMark Adams PetscScalar row_scale[LANDAU_MAX_Q_FACE]={0},col_scale[LANDAU_MAX_Q_FACE]={0}; 323bfc784b7SMark Adams if (coo_vals) { // mirror (i,j) in CreateStaticGPUData 324bfc784b7SMark Adams const int fullNb = coo_elem_fullNb[glb_elem_idx],fullNb2=fullNb*fullNb; 325bfc784b7SMark Adams idx = Idxs[f]; 326bfc784b7SMark Adams if (idx >= 0) { 327bfc784b7SMark Adams nr = 1; 328bfc784b7SMark Adams row_scale[0] = 1.; 329bfc784b7SMark Adams } else { 330bfc784b7SMark Adams idx = -idx - 1; 331bfc784b7SMark Adams for (q = 0, nr = 0; q < d_maps->num_face; q++, nr++) { 332bfc784b7SMark Adams if (d_maps->c_maps[idx][q].gid < 0) break; 333bfc784b7SMark Adams row_scale[q] = d_maps->c_maps[idx][q].scale; 334bfc784b7SMark Adams } 335bfc784b7SMark Adams } 336bfc784b7SMark Adams idx = Idxs[g]; 337bfc784b7SMark Adams if (idx >= 0) { 338bfc784b7SMark Adams nc = 1; 339bfc784b7SMark Adams col_scale[0] = 1.; 340bfc784b7SMark Adams } else { 341bfc784b7SMark Adams idx = -idx - 1; 342bfc784b7SMark Adams nc = d_maps->num_face; 343bfc784b7SMark Adams for (q = 0, nc = 0; q < d_maps->num_face; q++, nc++) { 344bfc784b7SMark Adams if (d_maps->c_maps[idx][q].gid < 0) break; 345bfc784b7SMark Adams col_scale[q] = d_maps->c_maps[idx][q].scale; 346bfc784b7SMark Adams } 347bfc784b7SMark Adams } 348cada7fc7SMark Adams const int idx0 = bid_coo_sz_batch + coo_elem_offsets[glb_elem_idx] + fieldA*fullNb2 + fullNb * coo_elem_point_offsets[glb_elem_idx][f] + nr * coo_elem_point_offsets[glb_elem_idx][g]; 349bfc784b7SMark Adams for (int q = 0, idx2 = idx0; q < nr; q++) { 350bfc784b7SMark Adams for (int d = 0; d < nc; d++, idx2++) { 351bfc784b7SMark Adams coo_vals[idx2] = row_scale[q]*col_scale[d]*Aij; 352bfc784b7SMark Adams } 353bfc784b7SMark Adams } 354bfc784b7SMark Adams } else { 355bfc784b7SMark Adams PetscScalar vals[LANDAU_MAX_Q_FACE*LANDAU_MAX_Q_FACE]={0}; 356ad4b5651SMark Adams PetscInt rows[LANDAU_MAX_Q_FACE],cols[LANDAU_MAX_Q_FACE]; 357ad4b5651SMark Adams idx = Idxs[f]; 3588a6f2e61SMark Adams if (idx >= 0) { 3598a6f2e61SMark Adams nr = 1; 360ad4b5651SMark Adams rows[0] = idx; 361ad4b5651SMark Adams row_scale[0] = 1.; 3628a6f2e61SMark Adams } else { 363ad4b5651SMark Adams idx = -idx - 1; 364ad4b5651SMark Adams for (q = 0, nr = 0; q < d_maps->num_face; q++, nr++) { 365ad4b5651SMark Adams if (d_maps->c_maps[idx][q].gid < 0) break; 366ad4b5651SMark Adams rows[q] = d_maps->c_maps[idx][q].gid; 367ad4b5651SMark Adams row_scale[q] = d_maps->c_maps[idx][q].scale; 3688a6f2e61SMark Adams } 369ad4b5651SMark Adams } 370ad4b5651SMark Adams idx = Idxs[g]; 3718a6f2e61SMark Adams if (idx >= 0) { 3728a6f2e61SMark Adams nc = 1; 373ad4b5651SMark Adams cols[0] = idx; 374ad4b5651SMark Adams col_scale[0] = 1.; 3758a6f2e61SMark Adams } else { 376ad4b5651SMark Adams idx = -idx - 1; 377ad4b5651SMark Adams for (q = 0, nc = 0; q < d_maps->num_face; q++, nc++) { 378ad4b5651SMark Adams if (d_maps->c_maps[idx][q].gid < 0) break; 379ad4b5651SMark Adams cols[q] = d_maps->c_maps[idx][q].gid; 380ad4b5651SMark Adams col_scale[q] = d_maps->c_maps[idx][q].scale; 3818a6f2e61SMark Adams } 382ad4b5651SMark Adams } 383bfc784b7SMark Adams 384ad4b5651SMark Adams for (q = 0; q < nr; q++) rows[q] = rows[q] + moffset; 385ad4b5651SMark Adams for (q = 0; q < nc; q++) cols[q] = cols[q] + moffset; 3868a6f2e61SMark Adams for (q = 0; q < nr; q++) { 3878a6f2e61SMark Adams for (d = 0; d < nc; d++) { 388ad4b5651SMark Adams vals[q*nc + d] = row_scale[q]*col_scale[d]*Aij; 3898a6f2e61SMark Adams } 3908a6f2e61SMark Adams } 391ad4b5651SMark Adams MatSetValuesDevice(d_mat,nr,rows,nc,cols,vals,ADD_VALUES); 392bfc784b7SMark Adams } 3938a6f2e61SMark Adams return 0; 3948a6f2e61SMark Adams } 3958a6f2e61SMark Adams 3968fdabdddSMark Adams PetscErrorCode LandauKokkosJacobian(DM plex[], const PetscInt Nq, const PetscInt batch_sz, const PetscInt num_grids, const PetscInt a_numCells[], PetscReal a_Eq_m[], PetscScalar a_elem_closure[], 397d2319daeSMark Adams const PetscScalar a_xarray[], const LandauStaticData *SData_d, const PetscReal shift, 3988a6f2e61SMark Adams const PetscLogEvent events[], const PetscInt a_mat_offset[], const PetscInt a_species_offset[], Mat subJ[], Mat JacP) 399e8d2b73aSMark Adams { 400e8d2b73aSMark Adams using scr_mem_t = Kokkos::DefaultExecutionSpace::scratch_memory_space; 40119be780dSMark Adams using real2_scr_t = Kokkos::View<PetscScalar**, Kokkos::LayoutRight, scr_mem_t>; 402e8d2b73aSMark Adams using g2_scr_t = Kokkos::View<PetscReal***, Kokkos::LayoutRight, scr_mem_t>; 403e8d2b73aSMark Adams using g3_scr_t = Kokkos::View<PetscReal****, Kokkos::LayoutRight, scr_mem_t>; 4048fdabdddSMark Adams PetscInt Nb=Nq,dim,num_cells_max,Nf_max,num_cells_batch; 405*dbabbaf5SMark Adams int nfaces=0,vector_size=512/Nq; 406e8d2b73aSMark Adams LandauCtx *ctx; 407e8d2b73aSMark Adams PetscReal *d_Eq_m=NULL; 4088a6f2e61SMark Adams PetscScalar *d_vertex_f=NULL; 4098a6f2e61SMark Adams P4estVertexMaps *maps[LANDAU_MAX_GRIDS]; // this gets captured 4108a6f2e61SMark Adams PetscSplitCSRDataStructure d_mat; 4118fdabdddSMark Adams PetscContainer container; 412bd08a171SMark Adams const int conc = Kokkos::DefaultExecutionSpace().concurrency(), openmp = !!(conc < 1000), team_size = (openmp==0) ? Nq : 1; 413bfc784b7SMark Adams const PetscInt coo_sz_batch = SData_d->coo_size/batch_sz; // capture 414e8d2b73aSMark Adams auto d_alpha_k = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->alpha); //static data 415e8d2b73aSMark Adams const PetscReal *d_alpha = d_alpha_k->data(); 4168a6f2e61SMark Adams const PetscInt Nftot = d_alpha_k->size(); // total number of species 417e8d2b73aSMark Adams auto d_beta_k = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->beta); 418e8d2b73aSMark Adams const PetscReal *d_beta = d_beta_k->data(); 419e8d2b73aSMark Adams auto d_invMass_k = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->invMass); 420e8d2b73aSMark Adams const PetscReal *d_invMass = d_invMass_k->data(); 421e8d2b73aSMark Adams auto d_B_k = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->B); 422e8d2b73aSMark Adams const PetscReal *d_BB = d_B_k->data(); 423e8d2b73aSMark Adams auto d_D_k = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->D); 424e8d2b73aSMark Adams const PetscReal *d_DD = d_D_k->data(); 425e8d2b73aSMark Adams auto d_invJ_k = *static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->invJ); // use Kokkos vector in kernels 426e8d2b73aSMark Adams auto d_x_k = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->x); //static data 427e8d2b73aSMark Adams const PetscReal *d_x = d_x_k->data(); 428e8d2b73aSMark Adams auto d_y_k = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->y); //static data 429e8d2b73aSMark Adams const PetscReal *d_y = d_y_k->data(); 430e8d2b73aSMark Adams auto d_z_k = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->z); //static data 4318a6f2e61SMark Adams const PetscReal *d_z = (LANDAU_DIM==3) ? d_z_k->data() : NULL; 4328a6f2e61SMark Adams auto d_w_k = *static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->w); //static data 4338a6f2e61SMark Adams const PetscReal *d_w = d_w_k.data(); 4348fdabdddSMark Adams // grid offsets - single vertex grid data 4358a6f2e61SMark Adams auto d_numCells_k = static_cast<Kokkos::View<PetscInt*, Kokkos::LayoutLeft>*>(SData_d->NCells); 4368a6f2e61SMark Adams const PetscInt *d_numCells = d_numCells_k->data(); 4378a6f2e61SMark Adams auto d_species_offset_k = static_cast<Kokkos::View<PetscInt*, Kokkos::LayoutLeft>*>(SData_d->species_offset); 4388a6f2e61SMark Adams const PetscInt *d_species_offset = d_species_offset_k->data(); 4398a6f2e61SMark Adams auto d_mat_offset_k = static_cast<Kokkos::View<PetscInt*, Kokkos::LayoutLeft>*>(SData_d->mat_offset); 4408a6f2e61SMark Adams const PetscInt *d_mat_offset = d_mat_offset_k->data(); 4418a6f2e61SMark Adams auto d_ip_offset_k = static_cast<Kokkos::View<PetscInt*, Kokkos::LayoutLeft>*>(SData_d->ip_offset); 4428a6f2e61SMark Adams const PetscInt *d_ip_offset = d_ip_offset_k->data(); 4438a6f2e61SMark Adams auto d_ipf_offset_k = static_cast<Kokkos::View<PetscInt*, Kokkos::LayoutLeft>*>(SData_d->ipf_offset); 4448a6f2e61SMark Adams const PetscInt *d_ipf_offset = d_ipf_offset_k->data(); 4458a6f2e61SMark Adams auto d_elem_offset_k = static_cast<Kokkos::View<PetscInt*, Kokkos::LayoutLeft>*>(SData_d->elem_offset); 4468a6f2e61SMark Adams const PetscInt *d_elem_offset = d_elem_offset_k->data(); 4478fdabdddSMark Adams #if defined(LANDAU_LAYOUT_LEFT) // preallocate dynamic data, including batched vertices 4488fdabdddSMark Adams Kokkos::View<PetscReal***, Kokkos::LayoutLeft > d_fdf_k = *static_cast<Kokkos::View<PetscReal***, Kokkos::LayoutLeft >*>(SData_d->ipfdf_data); 4498a6f2e61SMark Adams #else 4508fdabdddSMark Adams Kokkos::View<PetscReal***, Kokkos::LayoutRight > d_fdf_k = *static_cast<Kokkos::View<PetscReal***, Kokkos::LayoutRight >*>(SData_d->ipfdf_data); 4518a6f2e61SMark Adams #endif 4528fdabdddSMark Adams auto d_Eq_m_k = static_cast<Kokkos::View<PetscReal*, Kokkos::LayoutLeft>*>(SData_d->Eq_m); // static storage, dynamci data - E(t), copy later, single vertex 453bfc784b7SMark Adams // COO 454cada7fc7SMark Adams auto d_coo_elem_offsets_k = static_cast<Kokkos::View<LandauIdx*, Kokkos::LayoutLeft>*>(SData_d->coo_elem_offsets); 455cada7fc7SMark Adams LandauIdx *d_coo_elem_offsets = (SData_d->coo_size==0) ? NULL : d_coo_elem_offsets_k->data(); 456cada7fc7SMark Adams auto d_coo_elem_fullNb_k = static_cast<Kokkos::View<LandauIdx*, Kokkos::LayoutLeft>*>(SData_d->coo_elem_fullNb); 457cada7fc7SMark Adams LandauIdx *d_coo_elem_fullNb = (SData_d->coo_size==0) ? NULL : d_coo_elem_fullNb_k->data(); 458cada7fc7SMark Adams auto d_coo_elem_point_offsets_k = static_cast<Kokkos::View<LandauIdx*, Kokkos::LayoutLeft>*>(SData_d->coo_elem_point_offsets); 459cada7fc7SMark Adams LandauIdx (*d_coo_elem_point_offsets)[LANDAU_MAX_NQ+1] = (SData_d->coo_size==0) ? NULL : (LandauIdx (*)[LANDAU_MAX_NQ+1])d_coo_elem_point_offsets_k->data(); 460cada7fc7SMark Adams 461bfc784b7SMark Adams Kokkos::View<PetscScalar*, Kokkos::LayoutRight,Kokkos::DefaultExecutionSpace> d_coo_vals_k("coo_vals", SData_d->coo_size); // device data (default space) 462bfc784b7SMark Adams PetscScalar* d_coo_vals = (SData_d->coo_size==0) ? NULL : d_coo_vals_k.data(); 4638fdabdddSMark Adams 464e8d2b73aSMark Adams PetscFunctionBegin; 465*dbabbaf5SMark Adams while (vector_size & vector_size - 1) vector_size =vector_size & vector_size - 1; 466*dbabbaf5SMark Adams if (vector_size>16) vector_size = 16; // printf("DEBUG\n"); 4679566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(events[3],0,0,0,0)); 4689566063dSJacob Faibussowitsch PetscCall(DMGetApplicationContext(plex[0], &ctx)); 46928b400f6SJacob Faibussowitsch PetscCheck(ctx,PETSC_COMM_SELF, PETSC_ERR_PLIB, "no context"); 4709566063dSJacob Faibussowitsch PetscCall(DMGetDimension(plex[0], &dim)); 47163a3b9bcSJacob Faibussowitsch PetscCheck(LANDAU_DIM == dim,PETSC_COMM_WORLD, PETSC_ERR_PLIB, "dim %" PetscInt_FMT " != LANDAU_DIM %d",dim,LANDAU_DIM); 472a587d139SMark if (ctx->gpu_assembly) { 4739566063dSJacob Faibussowitsch PetscCall(PetscObjectQuery((PetscObject) JacP, "assembly_maps", (PetscObject *) &container)); 474bfc784b7SMark Adams if (container) { 475a587d139SMark P4estVertexMaps *h_maps=NULL; 4769566063dSJacob Faibussowitsch PetscCall(PetscContainerGetPointer(container, (void **) &h_maps)); 4778a6f2e61SMark Adams for (PetscInt grid=0 ; grid<num_grids ; grid++) { 4788a6f2e61SMark Adams if (h_maps[grid].d_self) { 4798a6f2e61SMark Adams maps[grid] = h_maps[grid].d_self; 4808a6f2e61SMark Adams nfaces = h_maps[grid].num_face; // nface=0 for CPU assembly 481a587d139SMark } else { 482a587d139SMark SETERRQ(PETSC_COMM_SELF, PETSC_ERR_PLIB, "GPU assembly but no metadata in container"); 483a587d139SMark } 4848a6f2e61SMark Adams } 485bfc784b7SMark Adams if (!d_coo_vals) { 486a587d139SMark // this does the setup the first time called 4879566063dSJacob Faibussowitsch PetscCall(MatKokkosGetDeviceMatWrite(JacP,&d_mat)); 488bfc784b7SMark Adams } else { 4898fdabdddSMark Adams d_mat = NULL; 490a587d139SMark } 491bfc784b7SMark Adams } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_PLIB, "GPU assembly but no metadata in container"); 492a587d139SMark } else { 4938a6f2e61SMark Adams for (PetscInt grid=0 ; grid<num_grids ; grid++) maps[grid] = NULL; 4948a6f2e61SMark Adams nfaces = 0; 4958fdabdddSMark Adams d_mat = NULL; 4968fdabdddSMark Adams container = NULL; 497a587d139SMark } 4988fdabdddSMark Adams num_cells_batch = Nf_max = num_cells_max = 0; 4998a6f2e61SMark Adams for (PetscInt grid=0 ; grid<num_grids ; grid++) { 5008a6f2e61SMark Adams int Nfloc = a_species_offset[grid+1] - a_species_offset[grid]; 5018a6f2e61SMark Adams if (Nfloc > Nf_max) Nf_max = Nfloc; 5028a6f2e61SMark Adams if (a_numCells[grid] > num_cells_max) num_cells_max = a_numCells[grid]; 5038fdabdddSMark Adams num_cells_batch += a_numCells[grid]; // we don't have a host element offset here (but in ctx) 5048a6f2e61SMark Adams } 5058a6f2e61SMark Adams const PetscInt totDim_max = Nf_max*Nq, elem_mat_size_max = totDim_max*totDim_max; 5068a6f2e61SMark Adams const PetscInt elem_mat_num_cells_max_grid = container ? 0 : num_cells_max; 5078fdabdddSMark Adams Kokkos::View<PetscScalar****, Kokkos::LayoutRight> d_elem_mats("element matrices", batch_sz, num_grids, elem_mat_num_cells_max_grid, elem_mat_size_max); // first call have large set of global (Jac) element matrices 5088a6f2e61SMark Adams const Kokkos::View<PetscReal*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_Eq_m_k (a_Eq_m, Nftot); 5098a6f2e61SMark Adams if (a_elem_closure || a_xarray) { 510e8d2b73aSMark Adams Kokkos::deep_copy (*d_Eq_m_k, h_Eq_m_k); 511e8d2b73aSMark Adams d_Eq_m = d_Eq_m_k->data(); 5128a6f2e61SMark Adams } else d_Eq_m = NULL; 5139566063dSJacob Faibussowitsch PetscCall(PetscKokkosInitializeCheck()); 5149566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(events[3],0,0,0,0)); 5158a6f2e61SMark Adams if (a_elem_closure || a_xarray) { // Jacobian, create f & df 5168a6f2e61SMark Adams Kokkos::View<PetscScalar*, Kokkos::LayoutLeft> *d_vertex_f_k = NULL; 5179566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(events[1],0,0,0,0)); 5188a6f2e61SMark Adams if (a_elem_closure) { 5198a6f2e61SMark Adams PetscInt closure_sz = 0; // argh, don't have this on the host!!! 5208a6f2e61SMark Adams for (PetscInt grid=0 ; grid<num_grids ; grid++) { 5218a6f2e61SMark Adams PetscInt nfloc = a_species_offset[grid+1] - a_species_offset[grid]; 5228a6f2e61SMark Adams closure_sz += Nq*nfloc*a_numCells[grid]; 5238a6f2e61SMark Adams } 5248fdabdddSMark Adams closure_sz *= batch_sz; 5258a6f2e61SMark Adams d_vertex_f_k = new Kokkos::View<PetscScalar*, Kokkos::LayoutLeft> ("closure",closure_sz); 5268a6f2e61SMark Adams const Kokkos::View<PetscScalar*, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged> > h_closure_k (a_elem_closure, closure_sz); // Vertex data for each element 5278a6f2e61SMark Adams Kokkos::deep_copy (*d_vertex_f_k, h_closure_k); 5288a6f2e61SMark Adams d_vertex_f = d_vertex_f_k->data(); 529af0767daSMark Adams } else { 5308a6f2e61SMark Adams d_vertex_f = (PetscScalar*)a_xarray; 531af0767daSMark Adams } 5329566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(events[1],0,0,0,0)); 5339566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(events[8],0,0,0,0)); 5349566063dSJacob Faibussowitsch PetscCall(PetscLogGpuTimeBegin()); 53519be780dSMark Adams 53619be780dSMark Adams const int scr_bytes_fdf = real2_scr_t::shmem_size(Nf_max,Nb); 537*dbabbaf5SMark Adams PetscCall(PetscInfo(plex[0], "df & f shared memory size: %d bytes in level, %d num cells total=%d, team size=%d, vector size=%d, #face=%d, Nf_max=%d\n",scr_bytes_fdf,KOKKOS_SHARED_LEVEL,num_cells_batch*batch_sz,team_size,vector_size,nfaces,Nf_max)); 538*dbabbaf5SMark Adams Kokkos::parallel_for("f, df", Kokkos::TeamPolicy<>(num_cells_batch*batch_sz, team_size, /* Kokkos::AUTO */ vector_size).set_scratch_size(KOKKOS_SHARED_LEVEL, Kokkos::PerTeam(scr_bytes_fdf)), KOKKOS_LAMBDA (const team_member team) { 5398fdabdddSMark Adams const PetscInt b_Nelem = d_elem_offset[num_grids], b_elem_idx = team.league_rank()%b_Nelem, b_id = team.league_rank()/b_Nelem, IPf_sz_glb = d_ipf_offset[num_grids]; 5408a6f2e61SMark Adams // find my grid 5418fdabdddSMark Adams PetscInt grid = 0; 5428fdabdddSMark Adams while (b_elem_idx >= d_elem_offset[grid+1]) grid++; 5438a6f2e61SMark Adams { 5448fdabdddSMark Adams const PetscInt loc_nip = d_numCells[grid]*Nq, loc_Nf = d_species_offset[grid+1] - d_species_offset[grid], loc_elem = b_elem_idx - d_elem_offset[grid]; 5458fdabdddSMark Adams const PetscInt moffset = LAND_MOFFSET(b_id,grid,batch_sz,num_grids,d_mat_offset); 54619be780dSMark Adams { 54719be780dSMark Adams real2_scr_t s_coef_k(team.team_scratch(KOKKOS_SHARED_LEVEL),Nf_max,Nb); 54819be780dSMark Adams PetscScalar *coef; 5498fdabdddSMark Adams const PetscReal *invJe = &d_invJ_k((d_ip_offset[grid] + loc_elem*Nq)*dim*dim); 550a587d139SMark // un pack IPData 5518a6f2e61SMark Adams if (!maps[grid]) { 5528fdabdddSMark Adams coef = &d_vertex_f[b_id*IPf_sz_glb + d_ipf_offset[grid] + loc_elem*Nb*loc_Nf]; // closure and IP indexing are the same 553af0767daSMark Adams } else { 55419be780dSMark Adams coef = s_coef_k.data(); 55519be780dSMark Adams Kokkos::parallel_for(Kokkos::TeamThreadRange(team,0,(int)loc_Nf), [=] (int f) { 55619be780dSMark Adams //for (int f = 0; f < loc_Nf; ++f) { 55719be780dSMark Adams Kokkos::parallel_for(Kokkos::ThreadVectorRange(team,0,(int)Nb), [=] (int b) { 55819be780dSMark Adams //for (int b = 0; b < Nb; ++b) { 55919be780dSMark Adams LandauIdx idx = maps[grid]->gIdx[loc_elem][f][b]; 560af0767daSMark Adams if (idx >= 0) { 56119be780dSMark Adams coef[f*Nb+b] = d_vertex_f[idx+moffset]; // xarray data, not IP, need raw array to deal with CPU assemble case (not used) 562af0767daSMark Adams } else { 563af0767daSMark Adams idx = -idx - 1; 56419be780dSMark Adams coef[f*Nb+b] = 0; 5658a6f2e61SMark Adams for (int q = 0; q < maps[grid]->num_face; q++) { 5668a6f2e61SMark Adams PetscInt id = maps[grid]->c_maps[idx][q].gid; 5678a6f2e61SMark Adams PetscScalar scale = maps[grid]->c_maps[idx][q].scale; 568f26f10aaSMark Adams if (id >= 0) coef[f*Nb+b] += scale*d_vertex_f[id+moffset]; 569af0767daSMark Adams } 570af0767daSMark Adams } 57119be780dSMark Adams }); 57219be780dSMark Adams }); 573af0767daSMark Adams } 57419be780dSMark Adams team.team_barrier(); 575a587d139SMark Kokkos::parallel_for(Kokkos::TeamThreadRange(team,0,Nq), [=] (int myQi) { 5768fdabdddSMark Adams const PetscReal *const invJ = &invJe[myQi*dim*dim]; // b_elem_idx: batch element index 577a587d139SMark const PetscReal *Bq = &d_BB[myQi*Nb], *Dq = &d_DD[myQi*Nb*dim]; 5788fdabdddSMark Adams Kokkos::parallel_for(Kokkos::ThreadVectorRange(team,0,(int)loc_Nf), [=] (int f) { 579a587d139SMark PetscInt b, e, d; 580e8d2b73aSMark Adams PetscReal refSpaceDer[LANDAU_DIM]; 5818fdabdddSMark Adams const PetscInt idx = d_ipf_offset[grid] + f*loc_nip + loc_elem*Nq + myQi; 5828fdabdddSMark Adams d_fdf_k(b_id,0,idx) = 0.0; 583a587d139SMark for (d = 0; d < LANDAU_DIM; ++d) refSpaceDer[d] = 0.0; 584a587d139SMark for (b = 0; b < Nb; ++b) { 58519be780dSMark Adams d_fdf_k(b_id,0,idx) += Bq[b]*PetscRealPart(coef[f*Nb+b]); 58619be780dSMark Adams for (d = 0; d < dim; ++d) refSpaceDer[d] += Dq[b*dim+d]*PetscRealPart(coef[f*Nb+b]); 587a587d139SMark } 588a587d139SMark for (d = 0; d < dim; ++d) { 5898fdabdddSMark Adams for (e = 0, d_fdf_k(b_id,d+1,idx) = 0.0; e < dim; ++e) { 5908fdabdddSMark Adams d_fdf_k(b_id,d+1,idx) += invJ[e*dim+d]*refSpaceDer[e]; 591a587d139SMark } 592a587d139SMark } 5938a6f2e61SMark Adams }); // f 5948a6f2e61SMark Adams }); // myQi 5958a6f2e61SMark Adams } 59619be780dSMark Adams team.team_barrier(); 59719be780dSMark Adams } // 'grid' scope 5988a6f2e61SMark Adams }); // global elems - fdf 5998a6f2e61SMark Adams Kokkos::fence(); 6009566063dSJacob Faibussowitsch PetscCall(PetscLogGpuTimeEnd()); // is this a fence? 6019566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(events[8],0,0,0,0)); 602e6118d12SMark Adams // Jacobian 60381451871SMark Adams auto jac_lambda = KOKKOS_LAMBDA (const team_member team) { 6048fdabdddSMark Adams const PetscInt b_Nelem = d_elem_offset[num_grids], b_elem_idx = team.league_rank()%b_Nelem, b_id = team.league_rank()/b_Nelem; 6058a6f2e61SMark Adams // find my grid 6068fdabdddSMark Adams PetscInt grid = 0; 6078fdabdddSMark Adams while (b_elem_idx >= d_elem_offset[grid+1]) grid++; 6088a6f2e61SMark Adams { 60919be780dSMark Adams const PetscInt loc_Nf = d_species_offset[grid+1]-d_species_offset[grid], loc_elem = b_elem_idx - d_elem_offset[grid]; 6108fdabdddSMark Adams const PetscInt moffset = LAND_MOFFSET(b_id,grid,batch_sz,num_grids,d_mat_offset); 61119be780dSMark Adams const PetscInt f_off = d_species_offset[grid], totDim = loc_Nf*Nq; 6128fdabdddSMark Adams g2_scr_t g2(team.team_scratch(KOKKOS_SHARED_LEVEL),dim,loc_Nf,Nq); 6138fdabdddSMark Adams g3_scr_t g3(team.team_scratch(KOKKOS_SHARED_LEVEL),dim,dim,loc_Nf,Nq); 6148fdabdddSMark Adams g2_scr_t gg2(team.team_scratch(KOKKOS_SHARED_LEVEL),dim,loc_Nf,Nq); 6158fdabdddSMark Adams g3_scr_t gg3(team.team_scratch(KOKKOS_SHARED_LEVEL),dim,dim,loc_Nf,Nq); 616e0eea495SMark // get g2[] & g3[] 617e0eea495SMark Kokkos::parallel_for(Kokkos::TeamThreadRange(team,0,Nq), [=] (int myQi) { 618e0eea495SMark using Kokkos::parallel_reduce; 6198fdabdddSMark Adams const PetscInt jpidx_glb = d_ip_offset[grid] + loc_elem * Nq + myQi; 6208fdabdddSMark Adams const PetscReal *invJ = &d_invJ_k(jpidx_glb*dim*dim); 6218fdabdddSMark Adams const PetscReal vj[3] = {d_x[jpidx_glb], d_y[jpidx_glb], d_z ? d_z[jpidx_glb] : 0}, wj = d_w[jpidx_glb]; 6228a6f2e61SMark Adams landau_inner_red::TensorValueType gg_temp; // reduce on part of gg2 and g33 for IP jpidx_g 6238fdabdddSMark Adams Kokkos::parallel_reduce(Kokkos::ThreadVectorRange (team, (int)d_ip_offset[num_grids]), [=] (const int& ipidx, landau_inner_red::TensorValueType & ggg) { 624e8d2b73aSMark Adams const PetscReal wi = d_w[ipidx], x = d_x[ipidx], y = d_y[ipidx]; 62552cdd6eaSMark PetscReal temp1[3] = {0, 0, 0}, temp2 = 0; 6268fdabdddSMark Adams PetscInt fieldA,d2,d3,f_off_r,grid_r,ipidx_g,nip_loc_r,loc_Nf_r; 627e0eea495SMark #if LANDAU_DIM==2 6288a6f2e61SMark Adams PetscReal Ud[2][2], Uk[2][2], mask = (PetscAbs(vj[0]-x) < 100*PETSC_SQRT_MACHINE_EPSILON && PetscAbs(vj[1]-y) < 100*PETSC_SQRT_MACHINE_EPSILON) ? 0. : 1.; 6298a6f2e61SMark Adams LandauTensor2D(vj, x, y, Ud, Uk, mask); 63052cdd6eaSMark #else 6317620afa1SMark Adams PetscReal U[3][3], z = d_z[ipidx], mask = (PetscAbs(vj[0]-x) < 100*PETSC_SQRT_MACHINE_EPSILON && PetscAbs(vj[1]-y) < 100*PETSC_SQRT_MACHINE_EPSILON && PetscAbs(vj[2]-z) < 100*PETSC_SQRT_MACHINE_EPSILON) ? 0. : 1.; 6328a6f2e61SMark Adams LandauTensor3D(vj, x, y, z, U, mask); 63352cdd6eaSMark #endif 6348a6f2e61SMark Adams grid_r = 0; 6358a6f2e61SMark Adams while (ipidx >= d_ip_offset[grid_r+1]) grid_r++; // yuck search for grid 6368a6f2e61SMark Adams f_off_r = d_species_offset[grid_r]; 6378a6f2e61SMark Adams ipidx_g = ipidx - d_ip_offset[grid_r]; 6388a6f2e61SMark Adams nip_loc_r = d_numCells[grid_r]*Nq; 6398fdabdddSMark Adams loc_Nf_r = d_species_offset[grid_r+1] - d_species_offset[grid_r]; 6408fdabdddSMark Adams for (fieldA = 0; fieldA < loc_Nf_r; ++fieldA) { 6418fdabdddSMark Adams const PetscInt idx = d_ipf_offset[grid_r] + fieldA*nip_loc_r + ipidx_g; 6428fdabdddSMark Adams temp1[0] += d_fdf_k(b_id,1,idx)*d_beta[fieldA+f_off_r]*d_invMass[fieldA+f_off_r]; 6438fdabdddSMark Adams temp1[1] += d_fdf_k(b_id,2,idx)*d_beta[fieldA+f_off_r]*d_invMass[fieldA+f_off_r]; 64452cdd6eaSMark #if LANDAU_DIM==3 6458fdabdddSMark Adams temp1[2] += d_fdf_k(b_id,3,idx)*d_beta[fieldA+f_off_r]*d_invMass[fieldA+f_off_r]; 64652cdd6eaSMark #endif 6478fdabdddSMark Adams temp2 += d_fdf_k(b_id,0,idx)*d_beta[fieldA+f_off_r]; 64852cdd6eaSMark } 64952cdd6eaSMark temp1[0] *= wi; 65052cdd6eaSMark temp1[1] *= wi; 65152cdd6eaSMark #if LANDAU_DIM==3 65252cdd6eaSMark temp1[2] *= wi; 65352cdd6eaSMark #endif 65452cdd6eaSMark temp2 *= wi; 65552cdd6eaSMark #if LANDAU_DIM==2 65652cdd6eaSMark for (d2 = 0; d2 < 2; d2++) { 657e0eea495SMark for (d3 = 0; d3 < 2; ++d3) { 658e0eea495SMark /* K = U * grad(f): g2=e: i,A */ 65952cdd6eaSMark ggg.gg2[d2] += Uk[d2][d3]*temp1[d3]; 660e0eea495SMark /* D = -U * (I \kron (fx)): g3=f: i,j,A */ 66152cdd6eaSMark ggg.gg3[d2][d3] += Ud[d2][d3]*temp2; 662e0eea495SMark } 663e0eea495SMark } 664e0eea495SMark #else 665e0eea495SMark for (d2 = 0; d2 < 3; ++d2) { 666e0eea495SMark for (d3 = 0; d3 < 3; ++d3) { 667e0eea495SMark /* K = U * grad(f): g2 = e: i,A */ 66852cdd6eaSMark ggg.gg2[d2] += U[d2][d3]*temp1[d3]; 669e0eea495SMark /* D = -U * (I \kron (fx)): g3 = f: i,j,A */ 67052cdd6eaSMark ggg.gg3[d2][d3] += U[d2][d3]*temp2; 671e0eea495SMark } 672e0eea495SMark } 673e0eea495SMark #endif 67452cdd6eaSMark }, Kokkos::Sum<landau_inner_red::TensorValueType>(gg_temp)); 67552cdd6eaSMark // add alpha and put in gg2/3 6768fdabdddSMark Adams Kokkos::parallel_for(Kokkos::ThreadVectorRange (team, (int)loc_Nf), [&] (const int& fieldA) { 67752cdd6eaSMark PetscInt d2,d3; 67852cdd6eaSMark for (d2 = 0; d2 < dim; d2++) { 6798a6f2e61SMark Adams gg2(d2,fieldA,myQi) = gg_temp.gg2[d2]*d_alpha[fieldA+f_off]; 68052cdd6eaSMark for (d3 = 0; d3 < dim; d3++) { 6818a6f2e61SMark Adams gg3(d2,d3,fieldA,myQi) = -gg_temp.gg3[d2][d3]*d_alpha[fieldA+f_off]*d_invMass[fieldA+f_off]; 68252cdd6eaSMark } 68352cdd6eaSMark } 684e0eea495SMark }); 68552cdd6eaSMark /* add electric field term once per IP */ 6868fdabdddSMark Adams Kokkos::parallel_for(Kokkos::ThreadVectorRange (team, (int)loc_Nf), [&] (const int& fieldA) { 6878a6f2e61SMark Adams gg2(dim-1,fieldA,myQi) += d_Eq_m[fieldA+f_off]; 68852cdd6eaSMark }); 6898fdabdddSMark Adams Kokkos::parallel_for(Kokkos::ThreadVectorRange (team, (int)loc_Nf), [=] (const int& fieldA) { 690e0eea495SMark int d,d2,d3,dp; 691e0eea495SMark /* Jacobian transform - g2, g3 - per thread (2D) */ 692e0eea495SMark for (d = 0; d < dim; ++d) { 69352cdd6eaSMark g2(d,fieldA,myQi) = 0; 694e0eea495SMark for (d2 = 0; d2 < dim; ++d2) { 6958fdabdddSMark Adams g2(d,fieldA,myQi) += invJ[d*dim+d2]*gg2(d2,fieldA,myQi); 69652cdd6eaSMark g3(d,d2,fieldA,myQi) = 0; 697e0eea495SMark for (d3 = 0; d3 < dim; ++d3) { 698e0eea495SMark for (dp = 0; dp < dim; ++dp) { 6998fdabdddSMark Adams g3(d,d2,fieldA,myQi) += invJ[d*dim + d3]*gg3(d3,dp,fieldA,myQi)*invJ[d2*dim + dp]; 700e0eea495SMark } 701e0eea495SMark } 70252cdd6eaSMark g3(d,d2,fieldA,myQi) *= wj; 703e0eea495SMark } 70452cdd6eaSMark g2(d,fieldA,myQi) *= wj; 705e0eea495SMark } 706e0eea495SMark }); 70752cdd6eaSMark }); // Nq 708e0eea495SMark team.team_barrier(); 7091eec90e4SMark Adams { /* assemble */ 7108fdabdddSMark Adams for (PetscInt fieldA = 0; fieldA < loc_Nf; fieldA++) { 711930e68a5SMark Adams /* assemble */ 7121eec90e4SMark Adams Kokkos::parallel_for(Kokkos::TeamThreadRange(team,0,Nb), [=] (int f) { 7131eec90e4SMark Adams Kokkos::parallel_for(Kokkos::ThreadVectorRange(team,0,Nb), [=] (int g) { 7141eec90e4SMark Adams PetscScalar t = 0; 7151eec90e4SMark Adams for (int qj = 0 ; qj < Nq ; qj++) { // look at others integration points 716e0eea495SMark const PetscReal *BJq = &d_BB[qj*Nb], *DIq = &d_DD[qj*Nb*dim]; 7171eec90e4SMark Adams for (int d = 0; d < dim; ++d) { 7181eec90e4SMark Adams t += DIq[f*dim+d]*g2(d,fieldA,qj)*BJq[g]; 7191eec90e4SMark Adams for (int d2 = 0; d2 < dim; ++d2) { 7201eec90e4SMark Adams t += DIq[f*dim + d]*g3(d,d2,fieldA,qj)*DIq[g*dim + d2]; 721e0eea495SMark } 722e0eea495SMark } 723930e68a5SMark Adams } 7248a6f2e61SMark Adams if (elem_mat_num_cells_max_grid) { // CPU assembly 7251eec90e4SMark Adams const PetscInt fOff = (fieldA*Nb + f)*totDim + fieldA*Nb + g; 7268fdabdddSMark Adams d_elem_mats(b_id,grid,loc_elem,fOff) = t; 72719be780dSMark Adams } else { 728cada7fc7SMark Adams landau_mat_assemble (d_mat, d_coo_vals, t, f, g, Nb, moffset, loc_elem, fieldA, maps[grid], d_coo_elem_offsets, d_coo_elem_fullNb, d_coo_elem_point_offsets, b_elem_idx, b_id*coo_sz_batch); 72919be780dSMark Adams } 7301eec90e4SMark Adams }); 7311eec90e4SMark Adams }); 7321eec90e4SMark Adams } 733a587d139SMark } 73419be780dSMark Adams } // scope with 'grid' 73581451871SMark Adams }; 7369566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(events[4],0,0,0,0)); 7379566063dSJacob Faibussowitsch PetscCall(PetscLogGpuTimeBegin()); 738ad4b5651SMark Adams const int scr_bytes = 2*(g2_scr_t::shmem_size(dim,Nf_max,Nq) + g3_scr_t::shmem_size(dim,dim,Nf_max,Nq)); 739*dbabbaf5SMark Adams PetscCall(PetscInfo(plex[0], "Jacobian shared memory size: %d bytes in level %d num cells total=%d team size=%d vector size=%d #face=%d Nf_max=%d\n",scr_bytes,KOKKOS_SHARED_LEVEL,num_cells_batch*batch_sz,team_size,vector_size,nfaces,Nf_max)); 740*dbabbaf5SMark Adams Kokkos::parallel_for("Jacobian", Kokkos::TeamPolicy<>(num_cells_batch*batch_sz, team_size, vector_size).set_scratch_size(KOKKOS_SHARED_LEVEL, Kokkos::PerTeam(scr_bytes)), jac_lambda); 7419566063dSJacob Faibussowitsch PetscCall(PetscLogGpuTimeEnd()); 7429566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(events[4],0,0,0,0)); 74319be780dSMark Adams if (d_vertex_f_k) delete d_vertex_f_k; 744*dbabbaf5SMark Adams } else { // mass 74513241b68SMark Adams using fieldMats_scr_t = Kokkos::View<PetscScalar*, Kokkos::LayoutRight, scr_mem_t>; 7469566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(events[16],0,0,0,0)); 7479566063dSJacob Faibussowitsch PetscCall(PetscLogGpuTimeBegin()); 748*dbabbaf5SMark Adams PetscCall(PetscInfo(plex[0], "Mass team size=%d vector size=%d #face=%d Nb=%" PetscInt_FMT ", %s assembly\n",team_size,vector_size,nfaces,Nb, d_coo_vals ? "COO" : "CSR")); 749*dbabbaf5SMark Adams Kokkos::parallel_for("Mass", Kokkos::TeamPolicy<>(num_cells_batch*batch_sz, team_size, Kokkos::AUTO /* vector_size */), KOKKOS_LAMBDA (const team_member team) { 7508fdabdddSMark Adams const PetscInt b_Nelem = d_elem_offset[num_grids], b_elem_idx = team.league_rank()%b_Nelem, b_id = team.league_rank()/b_Nelem; 7518a6f2e61SMark Adams // find my grid 7528fdabdddSMark Adams PetscInt grid = 0; 7538fdabdddSMark Adams while (b_elem_idx >= d_elem_offset[grid+1]) grid++; 7548a6f2e61SMark Adams { 7558fdabdddSMark Adams const PetscInt loc_Nf = d_species_offset[grid+1]-d_species_offset[grid], loc_elem = b_elem_idx - d_elem_offset[grid], totDim = loc_Nf*Nq, jpidx_0 = d_ip_offset[grid] + loc_elem * Nq; 7568fdabdddSMark Adams const PetscInt moffset = LAND_MOFFSET(b_id,grid,batch_sz,num_grids,d_mat_offset); 7578fdabdddSMark Adams for (int fieldA = 0; fieldA < loc_Nf; fieldA++) { 7581eec90e4SMark Adams /* assemble */ 7591eec90e4SMark Adams Kokkos::parallel_for(Kokkos::TeamThreadRange(team,0,Nb), [=] (int f) { 7601eec90e4SMark Adams Kokkos::parallel_for(Kokkos::ThreadVectorRange(team,0,Nb), [=] (int g) { 7611eec90e4SMark Adams PetscScalar t = 0; 7621eec90e4SMark Adams for (int qj = 0 ; qj < Nq ; qj++) { // look at others integration points 7631eec90e4SMark Adams const PetscReal *BJq = &d_BB[qj*Nb]; 7648fdabdddSMark Adams const PetscInt jpidx_glb = jpidx_0 + qj; 7658a6f2e61SMark Adams if (dim==2) { 7668fdabdddSMark Adams t += BJq[f] * d_w_k(jpidx_glb) * shift * BJq[g] * 2. * PETSC_PI; 7678a6f2e61SMark Adams } else { 7688fdabdddSMark Adams t += BJq[f] * d_w_k(jpidx_glb) * shift * BJq[g]; 7691eec90e4SMark Adams } 7708a6f2e61SMark Adams } 7718a6f2e61SMark Adams if (elem_mat_num_cells_max_grid) { 7721eec90e4SMark Adams const PetscInt fOff = (fieldA*Nb + f)*totDim + fieldA*Nb + g; 7738fdabdddSMark Adams d_elem_mats(b_id,grid,loc_elem,fOff) = t; 774ad4b5651SMark Adams } else { 775cada7fc7SMark Adams landau_mat_assemble (d_mat, d_coo_vals, t, f, g, Nb, moffset, loc_elem, fieldA, maps[grid], d_coo_elem_offsets, d_coo_elem_fullNb, d_coo_elem_point_offsets, b_elem_idx, b_id*coo_sz_batch); 776ad4b5651SMark Adams } 777e0eea495SMark }); 778e0eea495SMark }); 77913241b68SMark Adams } // field 78013241b68SMark Adams } // grid 7811eec90e4SMark Adams }); 7829566063dSJacob Faibussowitsch PetscCall(PetscLogGpuTimeEnd()); 7839566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(events[16],0,0,0,0)); 7841eec90e4SMark Adams } 785e8d2b73aSMark Adams Kokkos::fence(); 786bfc784b7SMark Adams if (d_coo_vals) { 7879566063dSJacob Faibussowitsch PetscCall(MatSetValuesCOO(JacP,d_coo_vals,ADD_VALUES)); 788bfc784b7SMark Adams } else if (elem_mat_num_cells_max_grid) { // CPU assembly 7898fdabdddSMark Adams Kokkos::View<PetscScalar****, Kokkos::LayoutRight>::HostMirror h_elem_mats = Kokkos::create_mirror_view(d_elem_mats); 790e0eea495SMark Kokkos::deep_copy (h_elem_mats, d_elem_mats); 791d618d24fSMark Adams PetscCheck(!container,PETSC_COMM_SELF, PETSC_ERR_PLIB, "?????"); 7928fdabdddSMark Adams for (PetscInt b_id = 0 ; b_id < batch_sz ; b_id++) { // OpenMP (once) 7938a6f2e61SMark Adams for (PetscInt grid=0 ; grid<num_grids ; grid++) { 7948a6f2e61SMark Adams PetscSection section, globalSection; 7958a6f2e61SMark Adams PetscInt cStart,cEnd; 7968fdabdddSMark Adams Mat B = subJ[ LAND_PACK_IDX(b_id,grid) ]; 7978fdabdddSMark Adams PetscInt moffset = LAND_MOFFSET(b_id,grid,batch_sz,num_grids,a_mat_offset), nloc, nzl, colbuf[1024], row; 7988fdabdddSMark Adams const PetscInt *cols; 7998fdabdddSMark Adams const PetscScalar *vals; 8009566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(events[5],0,0,0,0)); 8019566063dSJacob Faibussowitsch PetscCall(DMPlexGetHeightStratum(plex[grid],0,&cStart,&cEnd)); 8029566063dSJacob Faibussowitsch PetscCall(DMGetLocalSection(plex[grid], §ion)); 8039566063dSJacob Faibussowitsch PetscCall(DMGetGlobalSection(plex[grid], &globalSection)); 8049566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(events[5],0,0,0,0)); 8059566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(events[6],0,0,0,0)); 8068a6f2e61SMark Adams for (PetscInt ej = cStart ; ej < cEnd; ++ej) { 8078fdabdddSMark Adams const PetscScalar *elMat = &h_elem_mats(b_id,grid,ej-cStart,0); 8089566063dSJacob Faibussowitsch PetscCall(DMPlexMatSetClosure(plex[grid], section, globalSection, B, ej, elMat, ADD_VALUES)); 8098a6f2e61SMark Adams if (grid==0 && ej==-1) { 8108fdabdddSMark Adams const PetscInt loc_Nf = a_species_offset[grid+1]-a_species_offset[grid], totDim = loc_Nf*Nq; 811e0eea495SMark int d,f; 8128a6f2e61SMark Adams PetscPrintf(PETSC_COMM_SELF,"Kokkos Element matrix %d/%d\n",1,(int)a_numCells[grid]); 813e0eea495SMark for (d = 0; d < totDim; ++d){ 81452cdd6eaSMark for (f = 0; f < totDim; ++f) PetscPrintf(PETSC_COMM_SELF," %12.5e", PetscRealPart(elMat[d*totDim + f])); 81552cdd6eaSMark PetscPrintf(PETSC_COMM_SELF,"\n"); 816e0eea495SMark } 817e8d2b73aSMark Adams exit(14); 818e0eea495SMark } 819e0eea495SMark } 8208fdabdddSMark Adams // move nest matrix to global JacP 8219566063dSJacob Faibussowitsch PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY)); 8229566063dSJacob Faibussowitsch PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY)); 8239566063dSJacob Faibussowitsch PetscCall(MatGetSize(B, &nloc, NULL)); 8248a6f2e61SMark Adams for (int i=0 ; i<nloc ; i++) { 8259566063dSJacob Faibussowitsch PetscCall(MatGetRow(B,i,&nzl,&cols,&vals)); 82663a3b9bcSJacob Faibussowitsch PetscCheck(nzl<=1024,PetscObjectComm((PetscObject) B), PETSC_ERR_PLIB, "Row too big: %" PetscInt_FMT,nzl); 8278a6f2e61SMark Adams for (int j=0; j<nzl; j++) colbuf[j] = cols[j] + moffset; 8288a6f2e61SMark Adams row = i + moffset; 8299566063dSJacob Faibussowitsch PetscCall(MatSetValues(JacP,1,&row,nzl,colbuf,vals,ADD_VALUES)); 8309566063dSJacob Faibussowitsch PetscCall(MatRestoreRow(B,i,&nzl,&cols,&vals)); 8318a6f2e61SMark Adams } 8329566063dSJacob Faibussowitsch PetscCall(MatDestroy(&subJ[ LAND_PACK_IDX(b_id,grid) ])); 8339566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(events[6],0,0,0,0)); 8348a6f2e61SMark Adams } // grids 835a587d139SMark } 8368fdabdddSMark Adams } 837e0eea495SMark PetscFunctionReturn(0); 838e0eea495SMark } 839e0eea495SMark } // extern "C" 840