xref: /petsc/src/ts/utils/dmplexlandau/kokkos/landau.kokkos.cxx (revision e2f4a6cdb46c5d1ea278f2a02311b05b121c6220)
1e0eea495SMark /*
2e0eea495SMark   Implements the Kokkos kernel
3e0eea495SMark */
4e0eea495SMark #include <petscconf.h>
5c36a59beSJunchao Zhang // On Sunspot, as of 05/04/2023, the default SYCL compiler oneapi/eng-compiler/2022.12.30.003
6c36a59beSJunchao Zhang // failed to link this file, so we add "defined(PETSC_HAVE_SYCL)" to disable landau with SYCL
7c36a59beSJunchao Zhang // to facilitate petsc users' experiments on Sunspot.
8c36a59beSJunchao Zhang // TODO: remove it when Intel fixed the bug. See MR !6412
9c36a59beSJunchao Zhang #if defined(PETSC_HAVE_CUDA_CLANG) || defined(PETSC_HAVE_SYCL)
108d80707aSStefano Zampini   #include <petsclandau.h>
11c36a59beSJunchao Zhang   #define LANDAU_NOT_IMPLEMENTED SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "Not supported with CLANG or SYCL")
12*e2f4a6cdSJunchao Zhang PetscErrorCode LandauKokkosJacobian(DM[], const PetscInt, const PetscInt, const PetscInt, const PetscInt, const PetscInt[], PetscReal[], PetscScalar[], const PetscScalar[], const LandauStaticData *, const PetscReal, const PetscLogEvent[], const PetscInt[], const PetscInt[], Mat[], Mat)
138d80707aSStefano Zampini {
148d80707aSStefano Zampini   LANDAU_NOT_IMPLEMENTED;
158d80707aSStefano Zampini }
16*e2f4a6cdSJunchao Zhang PetscErrorCode LandauKokkosCreateMatMaps(P4estVertexMaps *, pointInterpolationP4est (*)[LANDAU_MAX_Q_FACE], PetscInt[], PetscInt)
178d80707aSStefano Zampini {
188d80707aSStefano Zampini   LANDAU_NOT_IMPLEMENTED;
198d80707aSStefano Zampini }
20ffb3bc9aSStefano Zampini PetscErrorCode LandauKokkosDestroyMatMaps(P4estVertexMaps *, PetscInt)
218d80707aSStefano Zampini {
228d80707aSStefano Zampini   LANDAU_NOT_IMPLEMENTED;
238d80707aSStefano Zampini }
24*e2f4a6cdSJunchao Zhang PetscErrorCode LandauKokkosStaticDataSet(DM, const PetscInt, const PetscInt, const PetscInt, const PetscInt, PetscInt[], PetscInt[], PetscInt[], PetscReal[], PetscReal[], PetscReal[], PetscReal[], PetscReal[], PetscReal[], PetscReal[], PetscReal[], PetscReal[], LandauStaticData *)
258d80707aSStefano Zampini {
268d80707aSStefano Zampini   LANDAU_NOT_IMPLEMENTED;
278d80707aSStefano Zampini }
28ffb3bc9aSStefano Zampini PetscErrorCode LandauKokkosStaticDataClear(LandauStaticData *)
298d80707aSStefano Zampini {
308d80707aSStefano Zampini   LANDAU_NOT_IMPLEMENTED;
318d80707aSStefano Zampini }
328d80707aSStefano Zampini #else
3311d22bbfSJunchao Zhang   #include <petscvec_kokkos.hpp>
348d80707aSStefano Zampini   #include <petsclandau.h>
35e0eea495SMark   #include <petsc/private/dmpleximpl.h> /*I   "petscdmplex.h"   I*/
36a16fd2c9SJacob Faibussowitsch   #include <petsc/private/deviceimpl.h>
37e0eea495SMark   #include <petscts.h>
38a587d139SMark 
39e0eea495SMark   #include <Kokkos_Core.hpp>
40e0eea495SMark   #include <cstdio>
41e0eea495SMark typedef Kokkos::TeamPolicy<>::member_type team_member;
42e0eea495SMark   #include "../land_tensors.h"
43e0eea495SMark 
44d71ae5a4SJacob Faibussowitsch namespace landau_inner_red
45d71ae5a4SJacob Faibussowitsch { // namespace helps with name resolution in reduction identity
4652cdd6eaSMark template <class ScalarType>
47e0eea495SMark struct array_type {
4852cdd6eaSMark   ScalarType gg2[LANDAU_DIM];
4952cdd6eaSMark   ScalarType gg3[LANDAU_DIM][LANDAU_DIM];
50e0eea495SMark 
51e0eea495SMark   KOKKOS_INLINE_FUNCTION // Default constructor - Initialize to 0's
52d71ae5a4SJacob Faibussowitsch   array_type()
53d71ae5a4SJacob Faibussowitsch   {
54e0eea495SMark     for (int j = 0; j < LANDAU_DIM; j++) {
5552cdd6eaSMark       gg2[j] = 0;
56ad540459SPierre Jolivet       for (int k = 0; k < LANDAU_DIM; k++) gg3[j][k] = 0;
57e0eea495SMark     }
58e0eea495SMark   }
59e0eea495SMark   KOKKOS_INLINE_FUNCTION // Copy Constructor
60d71ae5a4SJacob Faibussowitsch   array_type(const array_type &rhs)
61d71ae5a4SJacob Faibussowitsch   {
62e0eea495SMark     for (int j = 0; j < LANDAU_DIM; j++) {
6352cdd6eaSMark       gg2[j] = rhs.gg2[j];
64ad540459SPierre Jolivet       for (int k = 0; k < LANDAU_DIM; k++) gg3[j][k] = rhs.gg3[j][k];
65e0eea495SMark     }
66e0eea495SMark   }
67e0eea495SMark   KOKKOS_INLINE_FUNCTION // add operator
689371c9d4SSatish Balay     array_type &
69d71ae5a4SJacob Faibussowitsch     operator+=(const array_type &src)
70d71ae5a4SJacob Faibussowitsch   {
71e0eea495SMark     for (int j = 0; j < LANDAU_DIM; j++) {
7252cdd6eaSMark       gg2[j] += src.gg2[j];
73ad540459SPierre Jolivet       for (int k = 0; k < LANDAU_DIM; k++) gg3[j][k] += src.gg3[j][k];
74e0eea495SMark     }
75e0eea495SMark     return *this;
76e0eea495SMark   }
77e0eea495SMark   KOKKOS_INLINE_FUNCTION // volatile add operator
789371c9d4SSatish Balay     void
79d71ae5a4SJacob Faibussowitsch     operator+=(const volatile array_type &src) volatile
80d71ae5a4SJacob Faibussowitsch   {
81e0eea495SMark     for (int j = 0; j < LANDAU_DIM; j++) {
8252cdd6eaSMark       gg2[j] += src.gg2[j];
83ad540459SPierre Jolivet       for (int k = 0; k < LANDAU_DIM; k++) gg3[j][k] += src.gg3[j][k];
84e0eea495SMark     }
85e0eea495SMark   }
86e0eea495SMark };
8752cdd6eaSMark typedef array_type<PetscReal> TensorValueType; // used to simplify code below
889371c9d4SSatish Balay } // namespace landau_inner_red
89e0eea495SMark 
90d71ae5a4SJacob Faibussowitsch namespace Kokkos
91d71ae5a4SJacob Faibussowitsch { //reduction identity must be defined in Kokkos namespace
92e0eea495SMark template <>
9352cdd6eaSMark struct reduction_identity<landau_inner_red::TensorValueType> {
949371c9d4SSatish Balay   KOKKOS_FORCEINLINE_FUNCTION static landau_inner_red::TensorValueType sum() { return landau_inner_red::TensorValueType(); }
95e0eea495SMark };
969371c9d4SSatish Balay } // namespace Kokkos
97e0eea495SMark 
98e0eea495SMark extern "C" {
99f44ea33cSmarkadams4 PetscErrorCode LandauKokkosCreateMatMaps(P4estVertexMaps maps[], pointInterpolationP4est (*pointMaps)[LANDAU_MAX_Q_FACE], PetscInt Nf[], PetscInt grid)
100d71ae5a4SJacob Faibussowitsch {
101a587d139SMark   P4estVertexMaps                                                                                                                                       h_maps; /* host container */
1028a6f2e61SMark Adams   const Kokkos::View<pointInterpolationP4est *[LANDAU_MAX_Q_FACE], Kokkos::LayoutRight, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>>     h_points((pointInterpolationP4est *)pointMaps, maps[grid].num_reduced);
103f44ea33cSmarkadams4   const Kokkos::View<LandauIdx *[LANDAU_MAX_SPECIES][LANDAU_MAX_NQND], Kokkos::LayoutRight, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_gidx((LandauIdx *)maps[grid].gIdx, maps[grid].num_elements);
1048a6f2e61SMark Adams   Kokkos::View<pointInterpolationP4est *[LANDAU_MAX_Q_FACE], Kokkos::LayoutRight>     *d_points = new Kokkos::View<pointInterpolationP4est *[LANDAU_MAX_Q_FACE], Kokkos::LayoutRight>("points", maps[grid].num_reduced);
105f44ea33cSmarkadams4   Kokkos::View<LandauIdx *[LANDAU_MAX_SPECIES][LANDAU_MAX_NQND], Kokkos::LayoutRight> *d_gidx   = new Kokkos::View<LandauIdx *[LANDAU_MAX_SPECIES][LANDAU_MAX_NQND], Kokkos::LayoutRight>("gIdx", maps[grid].num_elements);
106a587d139SMark 
107a587d139SMark   PetscFunctionBegin;
108a587d139SMark   Kokkos::deep_copy(*d_gidx, h_gidx);
109a587d139SMark   Kokkos::deep_copy(*d_points, h_points);
1108a6f2e61SMark Adams   h_maps.num_elements = maps[grid].num_elements;
1118a6f2e61SMark Adams   h_maps.num_face     = maps[grid].num_face;
1128a6f2e61SMark Adams   h_maps.num_reduced  = maps[grid].num_reduced;
1138a6f2e61SMark Adams   h_maps.deviceType   = maps[grid].deviceType;
1148a6f2e61SMark Adams   h_maps.numgrids     = maps[grid].numgrids;
1158a6f2e61SMark Adams   h_maps.Nf           = Nf[grid];
116a587d139SMark   h_maps.c_maps       = (pointInterpolationP4est(*)[LANDAU_MAX_Q_FACE])d_points->data();
1178a6f2e61SMark Adams   maps[grid].vp1      = (void *)d_points;
118f44ea33cSmarkadams4   h_maps.gIdx         = (LandauIdx(*)[LANDAU_MAX_SPECIES][LANDAU_MAX_NQND])d_gidx->data();
1198a6f2e61SMark Adams   maps[grid].vp2      = (void *)d_gidx;
120a587d139SMark   {
121a587d139SMark     Kokkos::View<P4estVertexMaps, Kokkos::HostSpace> h_maps_k(&h_maps);
12211d22bbfSJunchao Zhang     Kokkos::View<P4estVertexMaps>                   *d_maps_k = new Kokkos::View<P4estVertexMaps>(Kokkos::create_mirror(Kokkos::DefaultExecutionSpace::memory_space(), h_maps_k));
123a587d139SMark     Kokkos::deep_copy(*d_maps_k, h_maps_k);
1248a6f2e61SMark Adams     maps[grid].d_self = d_maps_k->data();
1258a6f2e61SMark Adams     maps[grid].vp3    = (void *)d_maps_k;
126a587d139SMark   }
1273ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
128a587d139SMark }
129d71ae5a4SJacob Faibussowitsch PetscErrorCode LandauKokkosDestroyMatMaps(P4estVertexMaps maps[], PetscInt num_grids)
130d71ae5a4SJacob Faibussowitsch {
131362febeeSStefano Zampini   PetscFunctionBegin;
1328a6f2e61SMark Adams   for (PetscInt grid = 0; grid < num_grids; grid++) {
1338a6f2e61SMark Adams     auto a = static_cast<Kokkos::View<pointInterpolationP4est *[LANDAU_MAX_Q_FACE], Kokkos::LayoutRight> *>(maps[grid].vp1);
134f44ea33cSmarkadams4     auto b = static_cast<Kokkos::View<LandauIdx *[LANDAU_MAX_SPECIES][LANDAU_MAX_NQND], Kokkos::LayoutRight> *>(maps[grid].vp2);
1358a6f2e61SMark Adams     auto c = static_cast<Kokkos::View<P4estVertexMaps *> *>(maps[grid].vp3);
1369371c9d4SSatish Balay     delete a;
1379371c9d4SSatish Balay     delete b;
1389371c9d4SSatish Balay     delete c;
1398a6f2e61SMark Adams   }
1403ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
141a587d139SMark }
142a587d139SMark 
143f44ea33cSmarkadams4 PetscErrorCode LandauKokkosStaticDataSet(DM plex, const PetscInt Nq, const PetscInt Nb, const PetscInt batch_sz, const PetscInt num_grids, PetscInt a_numCells[], PetscInt a_species_offset[], PetscInt a_mat_offset[], PetscReal a_nu_alpha[], PetscReal a_nu_beta[], PetscReal a_invMass[], PetscReal a_lambdas[], PetscReal a_invJ[], PetscReal a_x[], PetscReal a_y[], PetscReal a_z[], PetscReal a_w[], LandauStaticData *SData_d)
144d71ae5a4SJacob Faibussowitsch {
145e0eea495SMark   PetscReal       *BB, *DD;
146e8d2b73aSMark Adams   PetscTabulation *Tf;
1478a6f2e61SMark Adams   PetscInt         dim;
148f44ea33cSmarkadams4   PetscInt         ip_offset[LANDAU_MAX_GRIDS + 1], ipf_offset[LANDAU_MAX_GRIDS + 1], elem_offset[LANDAU_MAX_GRIDS + 1], nip, IPf_sz, Nftot;
149e8d2b73aSMark Adams   PetscDS          prob;
150e0eea495SMark 
151e0eea495SMark   PetscFunctionBegin;
1529566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(plex, &dim));
1539566063dSJacob Faibussowitsch   PetscCall(DMGetDS(plex, &prob));
15463a3b9bcSJacob Faibussowitsch   PetscCheck(LANDAU_DIM == dim, PETSC_COMM_WORLD, PETSC_ERR_PLIB, "dim %" PetscInt_FMT " != LANDAU_DIM %d", dim, LANDAU_DIM);
1559566063dSJacob Faibussowitsch   PetscCall(PetscDSGetTabulation(prob, &Tf));
1569371c9d4SSatish Balay   BB           = Tf[0]->T[0];
1579371c9d4SSatish Balay   DD           = Tf[0]->T[1];
1588a6f2e61SMark Adams   ip_offset[0] = ipf_offset[0] = elem_offset[0] = 0;
1598a6f2e61SMark Adams   nip                                           = 0;
1608a6f2e61SMark Adams   IPf_sz                                        = 0;
1618a6f2e61SMark Adams   for (PetscInt grid = 0; grid < num_grids; grid++) {
1628a6f2e61SMark Adams     PetscInt nfloc        = a_species_offset[grid + 1] - a_species_offset[grid];
1638a6f2e61SMark Adams     elem_offset[grid + 1] = elem_offset[grid] + a_numCells[grid];
1648a6f2e61SMark Adams     nip += a_numCells[grid] * Nq;
1658a6f2e61SMark Adams     ip_offset[grid + 1] = nip;
1668a6f2e61SMark Adams     IPf_sz += Nq * nfloc * a_numCells[grid];
1678a6f2e61SMark Adams     ipf_offset[grid + 1] = IPf_sz;
1688a6f2e61SMark Adams   }
1698a6f2e61SMark Adams   Nftot = a_species_offset[num_grids];
1709566063dSJacob Faibussowitsch   PetscCall(PetscKokkosInitializeCheck());
171e8d2b73aSMark Adams   {
1728a6f2e61SMark Adams     const Kokkos::View<PetscReal *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_alpha(a_nu_alpha, Nftot);
1738a6f2e61SMark Adams     auto                                                                                                            alpha = new Kokkos::View<PetscReal *, Kokkos::LayoutLeft>("alpha", Nftot);
174e8d2b73aSMark Adams     SData_d->alpha                                                                                                        = static_cast<void *>(alpha);
1758a6f2e61SMark Adams     const Kokkos::View<PetscReal *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_beta(a_nu_beta, Nftot);
1768a6f2e61SMark Adams     auto                                                                                                            beta = new Kokkos::View<PetscReal *, Kokkos::LayoutLeft>("beta", Nftot);
177e8d2b73aSMark Adams     SData_d->beta                                                                                                        = static_cast<void *>(beta);
1788a6f2e61SMark Adams     const Kokkos::View<PetscReal *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_invMass(a_invMass, Nftot);
1798a6f2e61SMark Adams     auto                                                                                                            invMass = new Kokkos::View<PetscReal *, Kokkos::LayoutLeft>("invMass", Nftot);
180e8d2b73aSMark Adams     SData_d->invMass                                                                                                        = static_cast<void *>(invMass);
181ae6bf4a8Smarkadams4     const Kokkos::View<PetscReal *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_lambdas(a_lambdas, LANDAU_MAX_GRIDS * LANDAU_MAX_GRIDS);
182ae6bf4a8Smarkadams4     auto                                                                                                            lambdas = new Kokkos::View<PetscReal *, Kokkos::LayoutLeft>("lambdas", LANDAU_MAX_GRIDS * LANDAU_MAX_GRIDS);
183ae6bf4a8Smarkadams4     SData_d->lambdas                                                                                                        = static_cast<void *>(lambdas);
184e8d2b73aSMark Adams     const Kokkos::View<PetscReal *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_BB(BB, Nq * Nb);
185e8d2b73aSMark Adams     auto                                                                                                            B = new Kokkos::View<PetscReal *, Kokkos::LayoutLeft>("B", Nq * Nb);
186e8d2b73aSMark Adams     SData_d->B                                                                                                        = static_cast<void *>(B);
187e8d2b73aSMark Adams     const Kokkos::View<PetscReal *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_DD(DD, Nq * Nb * dim);
188e8d2b73aSMark Adams     auto                                                                                                            D = new Kokkos::View<PetscReal *, Kokkos::LayoutLeft>("D", Nq * Nb * dim);
189e8d2b73aSMark Adams     SData_d->D                                                                                                        = static_cast<void *>(D);
190e8d2b73aSMark Adams     const Kokkos::View<PetscReal *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_invJ(a_invJ, nip * dim * dim);
191e8d2b73aSMark Adams     auto                                                                                                            invJ = new Kokkos::View<PetscReal *, Kokkos::LayoutLeft>("invJ", nip * dim * dim);
192e8d2b73aSMark Adams     SData_d->invJ                                                                                                        = static_cast<void *>(invJ);
193e8d2b73aSMark Adams     const Kokkos::View<PetscReal *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_x(a_x, nip);
194e8d2b73aSMark Adams     auto                                                                                                            x = new Kokkos::View<PetscReal *, Kokkos::LayoutLeft>("x", nip);
195e8d2b73aSMark Adams     SData_d->x                                                                                                        = static_cast<void *>(x);
196e8d2b73aSMark Adams     const Kokkos::View<PetscReal *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_y(a_y, nip);
197e8d2b73aSMark Adams     auto                                                                                                            y = new Kokkos::View<PetscReal *, Kokkos::LayoutLeft>("y", nip);
198e8d2b73aSMark Adams     SData_d->y                                                                                                        = static_cast<void *>(y);
199e8d2b73aSMark Adams     const Kokkos::View<PetscReal *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_w(a_w, nip);
200e8d2b73aSMark Adams     auto                                                                                                            w = new Kokkos::View<PetscReal *, Kokkos::LayoutLeft>("w", nip);
201e8d2b73aSMark Adams     SData_d->w                                                                                                        = static_cast<void *>(w);
202e8d2b73aSMark Adams 
203e8d2b73aSMark Adams     Kokkos::deep_copy(*alpha, h_alpha);
204e8d2b73aSMark Adams     Kokkos::deep_copy(*beta, h_beta);
205e8d2b73aSMark Adams     Kokkos::deep_copy(*invMass, h_invMass);
206ae6bf4a8Smarkadams4     Kokkos::deep_copy(*lambdas, h_lambdas);
207e8d2b73aSMark Adams     Kokkos::deep_copy(*B, h_BB);
208e8d2b73aSMark Adams     Kokkos::deep_copy(*D, h_DD);
209e8d2b73aSMark Adams     Kokkos::deep_copy(*invJ, h_invJ);
210e8d2b73aSMark Adams     Kokkos::deep_copy(*x, h_x);
211e8d2b73aSMark Adams     Kokkos::deep_copy(*y, h_y);
212e8d2b73aSMark Adams     Kokkos::deep_copy(*w, h_w);
213e8d2b73aSMark Adams 
2148a6f2e61SMark Adams     if (dim == 3) {
215984ed092SMark Adams       const Kokkos::View<PetscReal *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_z(a_z, nip);
2168a6f2e61SMark Adams       auto                                                                                                            z = new Kokkos::View<PetscReal *, Kokkos::LayoutLeft>("z", nip);
2178a6f2e61SMark Adams       SData_d->z                                                                                                        = static_cast<void *>(z);
2188a6f2e61SMark Adams       Kokkos::deep_copy(*z, h_z);
2198a6f2e61SMark Adams     } else SData_d->z = NULL;
2208a6f2e61SMark Adams 
2218a6f2e61SMark Adams     //
2228a6f2e61SMark Adams     const Kokkos::View<PetscInt *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_NCells(a_numCells, num_grids);
2238a6f2e61SMark Adams     auto                                                                                                           nc = new Kokkos::View<PetscInt *, Kokkos::LayoutLeft>("NCells", num_grids);
2248a6f2e61SMark Adams     SData_d->NCells                                                                                                   = static_cast<void *>(nc);
2258a6f2e61SMark Adams     Kokkos::deep_copy(*nc, h_NCells);
2268a6f2e61SMark Adams 
2278a6f2e61SMark Adams     const Kokkos::View<PetscInt *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_species_offset(a_species_offset, num_grids + 1);
2288a6f2e61SMark Adams     auto                                                                                                           soff = new Kokkos::View<PetscInt *, Kokkos::LayoutLeft>("species_offset", num_grids + 1);
2298a6f2e61SMark Adams     SData_d->species_offset                                                                                             = static_cast<void *>(soff);
2308a6f2e61SMark Adams     Kokkos::deep_copy(*soff, h_species_offset);
2318a6f2e61SMark Adams 
2328a6f2e61SMark Adams     const Kokkos::View<PetscInt *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_mat_offset(a_mat_offset, num_grids + 1);
2338a6f2e61SMark Adams     auto                                                                                                           moff = new Kokkos::View<PetscInt *, Kokkos::LayoutLeft>("mat_offset", num_grids + 1);
2348a6f2e61SMark Adams     SData_d->mat_offset                                                                                                 = static_cast<void *>(moff);
2358a6f2e61SMark Adams     Kokkos::deep_copy(*moff, h_mat_offset);
2368a6f2e61SMark Adams 
2378a6f2e61SMark Adams     const Kokkos::View<PetscInt *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_ip_offset(ip_offset, num_grids + 1);
2388a6f2e61SMark Adams     auto                                                                                                           ipoff = new Kokkos::View<PetscInt *, Kokkos::LayoutLeft>("ip_offset", num_grids + 1);
2398a6f2e61SMark Adams     SData_d->ip_offset                                                                                                   = static_cast<void *>(ipoff);
2408a6f2e61SMark Adams     Kokkos::deep_copy(*ipoff, h_ip_offset);
2418a6f2e61SMark Adams 
2428a6f2e61SMark Adams     const Kokkos::View<PetscInt *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_elem_offset(elem_offset, num_grids + 1);
2438a6f2e61SMark Adams     auto                                                                                                           eoff = new Kokkos::View<PetscInt *, Kokkos::LayoutLeft>("elem_offset", num_grids + 1);
2448a6f2e61SMark Adams     SData_d->elem_offset                                                                                                = static_cast<void *>(eoff);
2458a6f2e61SMark Adams     Kokkos::deep_copy(*eoff, h_elem_offset);
2468a6f2e61SMark Adams 
2478a6f2e61SMark Adams     const Kokkos::View<PetscInt *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_ipf_offset(ipf_offset, num_grids + 1);
2488a6f2e61SMark Adams     auto                                                                                                           ipfoff = new Kokkos::View<PetscInt *, Kokkos::LayoutLeft>("ipf_offset", num_grids + 1);
2498a6f2e61SMark Adams     SData_d->ipf_offset                                                                                                   = static_cast<void *>(ipfoff);
2508a6f2e61SMark Adams     Kokkos::deep_copy(*ipfoff, h_ipf_offset);
2518a6f2e61SMark Adams   #if defined(LANDAU_LAYOUT_LEFT) // preallocate dynamic data, no copy
2528fdabdddSMark Adams     auto ipfdf_data     = new Kokkos::View<PetscReal ***, Kokkos::LayoutLeft>("fdf", batch_sz, dim + 1, IPf_sz);
2538a6f2e61SMark Adams   #else
2548fdabdddSMark Adams     auto ipfdf_data = new Kokkos::View<PetscReal ***, Kokkos::LayoutRight>("fdf", batch_sz, dim + 1, IPf_sz);
2558a6f2e61SMark Adams   #endif
2568a6f2e61SMark Adams     SData_d->ipfdf_data = static_cast<void *>(ipfdf_data);
2578fdabdddSMark Adams     auto Eq_m           = new Kokkos::View<PetscReal *, Kokkos::LayoutLeft>("Eq_m", Nftot); // allocate but do not set, same for whole batch
258e8d2b73aSMark Adams     SData_d->Eq_m       = static_cast<void *>(Eq_m);
259cada7fc7SMark Adams     const Kokkos::View<LandauIdx *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_coo_elem_offsets((LandauIdx *)SData_d->coo_elem_offsets, SData_d->coo_n_cellsTot + 1);
260cada7fc7SMark Adams     auto                                                                                                            coo_elem_offsets = new Kokkos::View<LandauIdx *, Kokkos::LayoutLeft>("coo_elem_offsets", SData_d->coo_n_cellsTot + 1);
261cada7fc7SMark Adams     const Kokkos::View<LandauIdx *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_coo_elem_fullNb((LandauIdx *)SData_d->coo_elem_fullNb, SData_d->coo_n_cellsTot);
262cada7fc7SMark Adams     auto                                                                                                            coo_elem_fullNb = new Kokkos::View<LandauIdx *, Kokkos::LayoutLeft>("coo_elem_offsets", SData_d->coo_n_cellsTot);
263f44ea33cSmarkadams4     const Kokkos::View<LandauIdx *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_coo_elem_point_offsets((LandauIdx *)SData_d->coo_elem_point_offsets, SData_d->coo_n_cellsTot * (LANDAU_MAX_NQND + 1));
264f44ea33cSmarkadams4     auto coo_elem_point_offsets = new Kokkos::View<LandauIdx *, Kokkos::LayoutLeft>("coo_elem_point_offsets", SData_d->coo_n_cellsTot * (LANDAU_MAX_NQND + 1));
265bfc784b7SMark Adams     // assign & copy
266bfc784b7SMark Adams     Kokkos::deep_copy(*coo_elem_offsets, h_coo_elem_offsets);
267bfc784b7SMark Adams     Kokkos::deep_copy(*coo_elem_fullNb, h_coo_elem_fullNb);
268bfc784b7SMark Adams     Kokkos::deep_copy(*coo_elem_point_offsets, h_coo_elem_point_offsets);
269bfc784b7SMark Adams     // need to free this now and use pointer space
2709566063dSJacob Faibussowitsch     PetscCall(PetscFree3(SData_d->coo_elem_offsets, SData_d->coo_elem_fullNb, SData_d->coo_elem_point_offsets));
271cada7fc7SMark Adams     SData_d->coo_elem_offsets       = static_cast<void *>(coo_elem_offsets);
272cada7fc7SMark Adams     SData_d->coo_elem_fullNb        = static_cast<void *>(coo_elem_fullNb);
273cada7fc7SMark Adams     SData_d->coo_elem_point_offsets = static_cast<void *>(coo_elem_point_offsets);
274a31f6053SMark Adams     auto coo_vals                   = new Kokkos::View<PetscScalar *, Kokkos::LayoutRight, Kokkos::DefaultExecutionSpace>("coo_vals", SData_d->coo_size);
275a31f6053SMark Adams     SData_d->coo_vals               = static_cast<void *>(coo_vals);
276e8d2b73aSMark Adams   }
2778a6f2e61SMark Adams   SData_d->maps = NULL; // not used
2783ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
279e8d2b73aSMark Adams }
280e8d2b73aSMark Adams 
281d71ae5a4SJacob Faibussowitsch PetscErrorCode LandauKokkosStaticDataClear(LandauStaticData *SData_d)
282d71ae5a4SJacob Faibussowitsch {
283e8d2b73aSMark Adams   PetscFunctionBegin;
284e8d2b73aSMark Adams   if (SData_d->alpha) {
285e8d2b73aSMark Adams     auto alpha = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->alpha);
286e8d2b73aSMark Adams     delete alpha;
2878a6f2e61SMark Adams     SData_d->alpha = NULL;
288e8d2b73aSMark Adams     auto beta      = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->beta);
289e8d2b73aSMark Adams     delete beta;
290e8d2b73aSMark Adams     auto invMass = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->invMass);
291e8d2b73aSMark Adams     delete invMass;
292ae6bf4a8Smarkadams4     auto lambdas = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->lambdas);
293ae6bf4a8Smarkadams4     delete lambdas;
294e8d2b73aSMark Adams     auto B = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->B);
295e8d2b73aSMark Adams     delete B;
296e8d2b73aSMark Adams     auto D = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->D);
297e8d2b73aSMark Adams     delete D;
298e8d2b73aSMark Adams     auto invJ = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->invJ);
299e8d2b73aSMark Adams     delete invJ;
300e8d2b73aSMark Adams     auto x = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->x);
301e8d2b73aSMark Adams     delete x;
302e8d2b73aSMark Adams     auto y = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->y);
303e8d2b73aSMark Adams     delete y;
3048a6f2e61SMark Adams     if (SData_d->z) {
305e8d2b73aSMark Adams       auto z = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->z);
306e8d2b73aSMark Adams       delete z;
3078a6f2e61SMark Adams     }
3088a6f2e61SMark Adams   #if defined(LANDAU_LAYOUT_LEFT) // preallocate dynamic data, no copy
3098fdabdddSMark Adams     auto z = static_cast<Kokkos::View<PetscReal ***, Kokkos::LayoutLeft> *>(SData_d->ipfdf_data);
3108a6f2e61SMark Adams   #else
3118fdabdddSMark Adams     auto z          = static_cast<Kokkos::View<PetscReal ***, Kokkos::LayoutRight> *>(SData_d->ipfdf_data);
3128a6f2e61SMark Adams   #endif
3138a6f2e61SMark Adams     delete z;
314e8d2b73aSMark Adams     auto w = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->w);
315e8d2b73aSMark Adams     delete w;
316e8d2b73aSMark Adams     auto Eq_m = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->Eq_m);
317e8d2b73aSMark Adams     delete Eq_m;
3188a6f2e61SMark Adams     // offset
3198a6f2e61SMark Adams     auto nc = static_cast<Kokkos::View<PetscInt *, Kokkos::LayoutLeft> *>(SData_d->NCells);
3208a6f2e61SMark Adams     delete nc;
3218a6f2e61SMark Adams     auto soff = static_cast<Kokkos::View<PetscInt *, Kokkos::LayoutLeft> *>(SData_d->species_offset);
3228a6f2e61SMark Adams     delete soff;
3238a6f2e61SMark Adams     auto moff = static_cast<Kokkos::View<PetscInt *, Kokkos::LayoutLeft> *>(SData_d->mat_offset);
3248a6f2e61SMark Adams     delete moff;
3258a6f2e61SMark Adams     auto ipoff = static_cast<Kokkos::View<PetscInt *, Kokkos::LayoutLeft> *>(SData_d->ip_offset);
3268a6f2e61SMark Adams     delete ipoff;
3278a6f2e61SMark Adams     auto eoff = static_cast<Kokkos::View<PetscInt *, Kokkos::LayoutLeft> *>(SData_d->elem_offset);
3288a6f2e61SMark Adams     delete eoff;
3298a6f2e61SMark Adams     auto ipfoff = static_cast<Kokkos::View<PetscInt *, Kokkos::LayoutLeft> *>(SData_d->ipf_offset);
3308a6f2e61SMark Adams     delete ipfoff;
331bfc784b7SMark Adams     auto coo_elem_offsets = static_cast<Kokkos::View<LandauIdx *, Kokkos::LayoutLeft> *>((void *)SData_d->coo_elem_offsets);
332bfc784b7SMark Adams     delete coo_elem_offsets;
333bfc784b7SMark Adams     auto coo_elem_fullNb = static_cast<Kokkos::View<LandauIdx *, Kokkos::LayoutLeft> *>((void *)SData_d->coo_elem_fullNb);
334bfc784b7SMark Adams     delete coo_elem_fullNb;
335cada7fc7SMark Adams     auto coo_elem_point_offsets = static_cast<Kokkos::View<LandauIdx *, Kokkos::LayoutLeft> *>((void *)SData_d->coo_elem_point_offsets);
336bfc784b7SMark Adams     delete coo_elem_point_offsets;
337bfc784b7SMark Adams     SData_d->coo_elem_offsets       = NULL;
338bfc784b7SMark Adams     SData_d->coo_elem_point_offsets = NULL;
339bfc784b7SMark Adams     SData_d->coo_elem_fullNb        = NULL;
340a31f6053SMark Adams     auto coo_vals                   = static_cast<Kokkos::View<PetscScalar *, Kokkos::LayoutRight, Kokkos::DefaultExecutionSpace> *>((void *)SData_d->coo_vals);
341a31f6053SMark Adams     delete coo_vals;
342af0767daSMark Adams   }
3433ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
344e8d2b73aSMark Adams }
345e8d2b73aSMark Adams 
34659118022SMark Adams   #define KOKKOS_SHARED_LEVEL 0   // 0 is shared, 1 is global
34759118022SMark Adams 
3488a6f2e61SMark Adams KOKKOS_INLINE_FUNCTION
349f44ea33cSmarkadams4 PetscErrorCode landau_mat_assemble(PetscScalar *coo_vals, const PetscScalar Aij, const PetscInt f, const PetscInt g, const PetscInt Nb, PetscInt moffset, const PetscInt elem, const PetscInt fieldA, const P4estVertexMaps *d_maps, const LandauIdx coo_elem_offsets[], const LandauIdx coo_elem_fullNb[], const LandauIdx (*coo_elem_point_offsets)[LANDAU_MAX_NQND + 1], const PetscInt glb_elem_idx, const PetscInt bid_coo_sz_batch)
350d71ae5a4SJacob Faibussowitsch {
3514c55d725SMark Adams   PetscInt               idx, q, nr, nc;
3528a6f2e61SMark Adams   const LandauIdx *const Idxs                         = &d_maps->gIdx[elem][fieldA][0];
353bfc784b7SMark Adams   PetscScalar            row_scale[LANDAU_MAX_Q_FACE] = {0}, col_scale[LANDAU_MAX_Q_FACE] = {0};
3544c55d725SMark Adams   { // mirror (i,j) in CreateStaticGPUData
355bfc784b7SMark Adams     const int fullNb = coo_elem_fullNb[glb_elem_idx], fullNb2 = fullNb * fullNb;
356bfc784b7SMark Adams     idx = Idxs[f];
357bfc784b7SMark Adams     if (idx >= 0) {
358bfc784b7SMark Adams       nr           = 1;
359bfc784b7SMark Adams       row_scale[0] = 1.;
360bfc784b7SMark Adams     } else {
361bfc784b7SMark Adams       idx = -idx - 1;
362bfc784b7SMark Adams       for (q = 0, nr = 0; q < d_maps->num_face; q++, nr++) {
363bfc784b7SMark Adams         if (d_maps->c_maps[idx][q].gid < 0) break;
364bfc784b7SMark Adams         row_scale[q] = d_maps->c_maps[idx][q].scale;
365bfc784b7SMark Adams       }
366bfc784b7SMark Adams     }
367bfc784b7SMark Adams     idx = Idxs[g];
368bfc784b7SMark Adams     if (idx >= 0) {
369bfc784b7SMark Adams       nc           = 1;
370bfc784b7SMark Adams       col_scale[0] = 1.;
371bfc784b7SMark Adams     } else {
372bfc784b7SMark Adams       idx = -idx - 1;
373bfc784b7SMark Adams       nc  = d_maps->num_face;
374bfc784b7SMark Adams       for (q = 0, nc = 0; q < d_maps->num_face; q++, nc++) {
375bfc784b7SMark Adams         if (d_maps->c_maps[idx][q].gid < 0) break;
376bfc784b7SMark Adams         col_scale[q] = d_maps->c_maps[idx][q].scale;
377bfc784b7SMark Adams       }
378bfc784b7SMark Adams     }
379cada7fc7SMark Adams     const int idx0 = bid_coo_sz_batch + coo_elem_offsets[glb_elem_idx] + fieldA * fullNb2 + fullNb * coo_elem_point_offsets[glb_elem_idx][f] + nr * coo_elem_point_offsets[glb_elem_idx][g];
380bfc784b7SMark Adams     for (int q = 0, idx2 = idx0; q < nr; q++) {
381ad540459SPierre Jolivet       for (int d = 0; d < nc; d++, idx2++) coo_vals[idx2] = row_scale[q] * col_scale[d] * Aij;
382bfc784b7SMark Adams     }
383bfc784b7SMark Adams   }
3843ba16761SJacob Faibussowitsch   return PETSC_SUCCESS;
3858a6f2e61SMark Adams }
3868a6f2e61SMark Adams 
387f44ea33cSmarkadams4 PetscErrorCode LandauKokkosJacobian(DM plex[], const PetscInt Nq, const PetscInt Nb, const PetscInt batch_sz, const PetscInt num_grids, const PetscInt a_numCells[], PetscReal a_Eq_m[], PetscScalar a_elem_closure[], const PetscScalar a_xarray[], const LandauStaticData *SData_d, const PetscReal shift, const PetscLogEvent events[], const PetscInt a_mat_offset[], const PetscInt a_species_offset[], Mat subJ[], Mat JacP)
388d71ae5a4SJacob Faibussowitsch {
389e8d2b73aSMark Adams   using scr_mem_t   = Kokkos::DefaultExecutionSpace::scratch_memory_space;
39019be780dSMark Adams   using real2_scr_t = Kokkos::View<PetscScalar **, Kokkos::LayoutRight, scr_mem_t>;
391e8d2b73aSMark Adams   using g2_scr_t    = Kokkos::View<PetscReal ***, Kokkos::LayoutRight, scr_mem_t>;
392e8d2b73aSMark Adams   using g3_scr_t    = Kokkos::View<PetscReal ****, Kokkos::LayoutRight, scr_mem_t>;
393f44ea33cSmarkadams4   PetscInt         dim, num_cells_max, Nf_max, num_cells_batch;
394dbabbaf5SMark Adams   int              nfaces = 0, vector_size = 512 / Nq;
395e8d2b73aSMark Adams   LandauCtx       *ctx;
396e8d2b73aSMark Adams   PetscReal       *d_Eq_m     = NULL;
3978a6f2e61SMark Adams   PetscScalar     *d_vertex_f = NULL;
3988a6f2e61SMark Adams   P4estVertexMaps *maps[LANDAU_MAX_GRIDS]; // this gets captured
3998fdabdddSMark Adams   PetscContainer   container;
400bd08a171SMark Adams   const int        conc = Kokkos::DefaultExecutionSpace().concurrency(), openmp = !!(conc < 1000), team_size = (openmp == 0) ? Nq : 1;
401bfc784b7SMark Adams   const PetscInt   coo_sz_batch = SData_d->coo_size / batch_sz;                                                 // capture
402e8d2b73aSMark Adams   auto             d_alpha_k    = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->alpha); //static data
403e8d2b73aSMark Adams   const PetscReal *d_alpha      = d_alpha_k->data();
4048a6f2e61SMark Adams   const PetscInt   Nftot        = d_alpha_k->size(); // total number of species
405e8d2b73aSMark Adams   auto             d_beta_k     = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->beta);
406e8d2b73aSMark Adams   const PetscReal *d_beta       = d_beta_k->data();
407e8d2b73aSMark Adams   auto             d_invMass_k  = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->invMass);
408e8d2b73aSMark Adams   const PetscReal *d_invMass    = d_invMass_k->data();
409ae6bf4a8Smarkadams4   auto             d_lambdas_k  = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->lambdas);
410ae6bf4a8Smarkadams4   const PetscReal *d_lambdas    = d_lambdas_k->data();
411e8d2b73aSMark Adams   auto             d_B_k        = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->B);
412e8d2b73aSMark Adams   const PetscReal *d_BB         = d_B_k->data();
413e8d2b73aSMark Adams   auto             d_D_k        = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->D);
414e8d2b73aSMark Adams   const PetscReal *d_DD         = d_D_k->data();
415e8d2b73aSMark Adams   auto             d_invJ_k     = *static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->invJ); // use Kokkos vector in kernels
416e8d2b73aSMark Adams   auto             d_x_k        = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->x);     //static data
417e8d2b73aSMark Adams   const PetscReal *d_x          = d_x_k->data();
418e8d2b73aSMark Adams   auto             d_y_k        = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->y); //static data
419e8d2b73aSMark Adams   const PetscReal *d_y          = d_y_k->data();
420e8d2b73aSMark Adams   auto             d_z_k        = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->z); //static data
4218a6f2e61SMark Adams   const PetscReal *d_z          = (LANDAU_DIM == 3) ? d_z_k->data() : NULL;
4228a6f2e61SMark Adams   auto             d_w_k        = *static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->w); //static data
4238a6f2e61SMark Adams   const PetscReal *d_w          = d_w_k.data();
4248fdabdddSMark Adams   // grid offsets - single vertex grid data
4258a6f2e61SMark Adams   auto                                            d_numCells_k       = static_cast<Kokkos::View<PetscInt *, Kokkos::LayoutLeft> *>(SData_d->NCells);
4268a6f2e61SMark Adams   const PetscInt                                 *d_numCells         = d_numCells_k->data();
4278a6f2e61SMark Adams   auto                                            d_species_offset_k = static_cast<Kokkos::View<PetscInt *, Kokkos::LayoutLeft> *>(SData_d->species_offset);
4288a6f2e61SMark Adams   const PetscInt                                 *d_species_offset   = d_species_offset_k->data();
4298a6f2e61SMark Adams   auto                                            d_mat_offset_k     = static_cast<Kokkos::View<PetscInt *, Kokkos::LayoutLeft> *>(SData_d->mat_offset);
4308a6f2e61SMark Adams   const PetscInt                                 *d_mat_offset       = d_mat_offset_k->data();
4318a6f2e61SMark Adams   auto                                            d_ip_offset_k      = static_cast<Kokkos::View<PetscInt *, Kokkos::LayoutLeft> *>(SData_d->ip_offset);
4328a6f2e61SMark Adams   const PetscInt                                 *d_ip_offset        = d_ip_offset_k->data();
4338a6f2e61SMark Adams   auto                                            d_ipf_offset_k     = static_cast<Kokkos::View<PetscInt *, Kokkos::LayoutLeft> *>(SData_d->ipf_offset);
4348a6f2e61SMark Adams   const PetscInt                                 *d_ipf_offset       = d_ipf_offset_k->data();
4358a6f2e61SMark Adams   auto                                            d_elem_offset_k    = static_cast<Kokkos::View<PetscInt *, Kokkos::LayoutLeft> *>(SData_d->elem_offset);
4368a6f2e61SMark Adams   const PetscInt                                 *d_elem_offset      = d_elem_offset_k->data();
4378fdabdddSMark Adams   #if defined(LANDAU_LAYOUT_LEFT) // preallocate dynamic data, including batched vertices
4388fdabdddSMark Adams   Kokkos::View<PetscReal ***, Kokkos::LayoutLeft> d_fdf_k            = *static_cast<Kokkos::View<PetscReal ***, Kokkos::LayoutLeft> *>(SData_d->ipfdf_data);
4398a6f2e61SMark Adams   #else
4408fdabdddSMark Adams   Kokkos::View<PetscReal ***, Kokkos::LayoutRight> d_fdf_k = *static_cast<Kokkos::View<PetscReal ***, Kokkos::LayoutRight> *>(SData_d->ipfdf_data);
4418a6f2e61SMark Adams   #endif
4428fdabdddSMark Adams   auto                                            d_Eq_m_k           = static_cast<Kokkos::View<PetscReal *, Kokkos::LayoutLeft> *>(SData_d->Eq_m); // static storage, dynamci data - E(t), copy later, single vertex
443bfc784b7SMark Adams   // COO
444cada7fc7SMark Adams   auto       d_coo_elem_offsets_k                           = static_cast<Kokkos::View<LandauIdx *, Kokkos::LayoutLeft> *>(SData_d->coo_elem_offsets);
445cada7fc7SMark Adams   LandauIdx *d_coo_elem_offsets                             = (SData_d->coo_size == 0) ? NULL : d_coo_elem_offsets_k->data();
446cada7fc7SMark Adams   auto       d_coo_elem_fullNb_k                            = static_cast<Kokkos::View<LandauIdx *, Kokkos::LayoutLeft> *>(SData_d->coo_elem_fullNb);
447cada7fc7SMark Adams   LandauIdx *d_coo_elem_fullNb                              = (SData_d->coo_size == 0) ? NULL : d_coo_elem_fullNb_k->data();
448cada7fc7SMark Adams   auto       d_coo_elem_point_offsets_k                     = static_cast<Kokkos::View<LandauIdx *, Kokkos::LayoutLeft> *>(SData_d->coo_elem_point_offsets);
449f44ea33cSmarkadams4   LandauIdx(*d_coo_elem_point_offsets)[LANDAU_MAX_NQND + 1] = (SData_d->coo_size == 0) ? NULL : (LandauIdx(*)[LANDAU_MAX_NQND + 1]) d_coo_elem_point_offsets_k->data();
450a31f6053SMark Adams   auto         d_coo_vals_k                                 = static_cast<Kokkos::View<PetscScalar *, Kokkos::LayoutRight> *>(SData_d->coo_vals);
451a31f6053SMark Adams   PetscScalar *d_coo_vals                                   = (SData_d->coo_size == 0) ? NULL : d_coo_vals_k->data();
4528fdabdddSMark Adams 
453e8d2b73aSMark Adams   PetscFunctionBegin;
454a31f6053SMark Adams   while (vector_size & (vector_size - 1)) vector_size = vector_size & (vector_size - 1);
455dbabbaf5SMark Adams   if (vector_size > 16) vector_size = 16; // printf("DEBUG\n");
4569566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(events[3], 0, 0, 0, 0));
4579566063dSJacob Faibussowitsch   PetscCall(DMGetApplicationContext(plex[0], &ctx));
45828b400f6SJacob Faibussowitsch   PetscCheck(ctx, PETSC_COMM_SELF, PETSC_ERR_PLIB, "no context");
4599566063dSJacob Faibussowitsch   PetscCall(DMGetDimension(plex[0], &dim));
46063a3b9bcSJacob Faibussowitsch   PetscCheck(LANDAU_DIM == dim, PETSC_COMM_WORLD, PETSC_ERR_PLIB, "dim %" PetscInt_FMT " != LANDAU_DIM %d", dim, LANDAU_DIM);
461a587d139SMark   if (ctx->gpu_assembly) {
4629566063dSJacob Faibussowitsch     PetscCall(PetscObjectQuery((PetscObject)JacP, "assembly_maps", (PetscObject *)&container));
463bfc784b7SMark Adams     if (container) {
464a587d139SMark       P4estVertexMaps *h_maps = NULL;
4659566063dSJacob Faibussowitsch       PetscCall(PetscContainerGetPointer(container, (void **)&h_maps));
4668a6f2e61SMark Adams       for (PetscInt grid = 0; grid < num_grids; grid++) {
4678a6f2e61SMark Adams         if (h_maps[grid].d_self) {
4688a6f2e61SMark Adams           maps[grid] = h_maps[grid].d_self;
4698a6f2e61SMark Adams           nfaces     = h_maps[grid].num_face; // nface=0 for CPU assembly
470a587d139SMark         } else {
471a587d139SMark           SETERRQ(PETSC_COMM_SELF, PETSC_ERR_PLIB, "GPU assembly but no metadata in container");
472a587d139SMark         }
4738a6f2e61SMark Adams       }
4744c55d725SMark Adams       PetscCheck(d_coo_vals, PETSC_COMM_SELF, PETSC_ERR_PLIB, "d_coo_vals==0");
475bfc784b7SMark Adams     } else SETERRQ(PETSC_COMM_SELF, PETSC_ERR_PLIB, "GPU assembly but no metadata in container");
476a587d139SMark   } else {
4778a6f2e61SMark Adams     for (PetscInt grid = 0; grid < num_grids; grid++) maps[grid] = NULL;
4788a6f2e61SMark Adams     nfaces    = 0;
4798fdabdddSMark Adams     container = NULL;
480a587d139SMark   }
4818fdabdddSMark Adams   num_cells_batch = Nf_max = num_cells_max = 0;
4828a6f2e61SMark Adams   for (PetscInt grid = 0; grid < num_grids; grid++) {
4838a6f2e61SMark Adams     int Nfloc = a_species_offset[grid + 1] - a_species_offset[grid];
4848a6f2e61SMark Adams     if (Nfloc > Nf_max) Nf_max = Nfloc;
4858a6f2e61SMark Adams     if (a_numCells[grid] > num_cells_max) num_cells_max = a_numCells[grid];
4868fdabdddSMark Adams     num_cells_batch += a_numCells[grid]; // we don't have a host element offset here (but in ctx)
4878a6f2e61SMark Adams   }
488d9008a5dSMark Adams   const int                                                                                                       elem_mat_num_cells_max_grid = container ? 0 : num_cells_max;
489bfbbad94Smarkadams4   #ifdef LAND_SUPPORT_CPU_ASS
490f44ea33cSmarkadams4   const int                                                                                                       totDim_max = Nf_max * Nb, elem_mat_size_max = totDim_max * totDim_max;
491a31f6053SMark Adams   Kokkos::View<PetscScalar ****, Kokkos::LayoutRight>                                                             d_elem_mats("element matrices", batch_sz, num_grids, elem_mat_num_cells_max_grid, elem_mat_size_max); // not used (cpu assembly)
492bfbbad94Smarkadams4   #endif
4938a6f2e61SMark Adams   const Kokkos::View<PetscReal *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_Eq_m_k(a_Eq_m, Nftot);
4948a6f2e61SMark Adams   if (a_elem_closure || a_xarray) {
495e8d2b73aSMark Adams     Kokkos::deep_copy(*d_Eq_m_k, h_Eq_m_k);
496e8d2b73aSMark Adams     d_Eq_m = d_Eq_m_k->data();
4978a6f2e61SMark Adams   } else d_Eq_m = NULL;
4989566063dSJacob Faibussowitsch   PetscCall(PetscKokkosInitializeCheck());
4999566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(events[3], 0, 0, 0, 0));
5008a6f2e61SMark Adams   if (a_elem_closure || a_xarray) { // Jacobian, create f & df
5018a6f2e61SMark Adams     Kokkos::View<PetscScalar *, Kokkos::LayoutLeft> *d_vertex_f_k = NULL;
5029566063dSJacob Faibussowitsch     PetscCall(PetscLogEventBegin(events[1], 0, 0, 0, 0));
5038a6f2e61SMark Adams     if (a_elem_closure) {
5048a6f2e61SMark Adams       PetscInt closure_sz = 0; // argh, don't have this on the host!!!
5058a6f2e61SMark Adams       for (PetscInt grid = 0; grid < num_grids; grid++) {
5068a6f2e61SMark Adams         PetscInt nfloc = a_species_offset[grid + 1] - a_species_offset[grid];
507f44ea33cSmarkadams4         closure_sz += Nb * nfloc * a_numCells[grid];
5088a6f2e61SMark Adams       }
5098fdabdddSMark Adams       closure_sz *= batch_sz;
5108a6f2e61SMark Adams       d_vertex_f_k = new Kokkos::View<PetscScalar *, Kokkos::LayoutLeft>("closure", closure_sz);
5118a6f2e61SMark Adams       const Kokkos::View<PetscScalar *, Kokkos::LayoutLeft, Kokkos::HostSpace, Kokkos::MemoryTraits<Kokkos::Unmanaged>> h_closure_k(a_elem_closure, closure_sz); // Vertex data for each element
5128a6f2e61SMark Adams       Kokkos::deep_copy(*d_vertex_f_k, h_closure_k);
5138a6f2e61SMark Adams       d_vertex_f = d_vertex_f_k->data();
514af0767daSMark Adams     } else {
5158a6f2e61SMark Adams       d_vertex_f = (PetscScalar *)a_xarray;
516af0767daSMark Adams     }
5179566063dSJacob Faibussowitsch     PetscCall(PetscLogEventEnd(events[1], 0, 0, 0, 0));
5189566063dSJacob Faibussowitsch     PetscCall(PetscLogEventBegin(events[8], 0, 0, 0, 0));
5199566063dSJacob Faibussowitsch     PetscCall(PetscLogGpuTimeBegin());
52019be780dSMark Adams 
52119be780dSMark Adams     const int scr_bytes_fdf = real2_scr_t::shmem_size(Nf_max, Nb);
5222d93f1a5SMark Adams     PetscCall(PetscInfo(plex[0], "df & f shared memory size: %d bytes in level, %d num cells total=%d, team size=%d, vector size=%d, #face=%d, Nf_max=%d\n", scr_bytes_fdf, KOKKOS_SHARED_LEVEL, (int)(num_cells_batch * batch_sz), team_size, vector_size, nfaces, (int)Nf_max));
5239371c9d4SSatish Balay     Kokkos::parallel_for(
5249371c9d4SSatish Balay       "f, df", Kokkos::TeamPolicy<>(num_cells_batch * batch_sz, team_size, /* Kokkos::AUTO */ vector_size).set_scratch_size(KOKKOS_SHARED_LEVEL, Kokkos::PerTeam(scr_bytes_fdf)), KOKKOS_LAMBDA(const team_member team) {
5258fdabdddSMark Adams         const PetscInt b_Nelem = d_elem_offset[num_grids], b_elem_idx = team.league_rank() % b_Nelem, b_id = team.league_rank() / b_Nelem, IPf_sz_glb = d_ipf_offset[num_grids];
5268a6f2e61SMark Adams         // find my grid
5278fdabdddSMark Adams         PetscInt grid = 0;
5288fdabdddSMark Adams         while (b_elem_idx >= d_elem_offset[grid + 1]) grid++;
5298a6f2e61SMark Adams         {
5308fdabdddSMark Adams           const PetscInt loc_nip = d_numCells[grid] * Nq, loc_Nf = d_species_offset[grid + 1] - d_species_offset[grid], loc_elem = b_elem_idx - d_elem_offset[grid];
5318fdabdddSMark Adams           const PetscInt moffset = LAND_MOFFSET(b_id, grid, batch_sz, num_grids, d_mat_offset);
53219be780dSMark Adams           {
53319be780dSMark Adams             real2_scr_t      s_coef_k(team.team_scratch(KOKKOS_SHARED_LEVEL), Nf_max, Nb);
53419be780dSMark Adams             PetscScalar     *coef;
5358fdabdddSMark Adams             const PetscReal *invJe = &d_invJ_k((d_ip_offset[grid] + loc_elem * Nq) * dim * dim);
536a587d139SMark             // un pack IPData
5378a6f2e61SMark Adams             if (!maps[grid]) {
5388fdabdddSMark Adams               coef = &d_vertex_f[b_id * IPf_sz_glb + d_ipf_offset[grid] + loc_elem * Nb * loc_Nf]; // closure and IP indexing are the same
539af0767daSMark Adams             } else {
54019be780dSMark Adams               coef = s_coef_k.data();
54119be780dSMark Adams               Kokkos::parallel_for(Kokkos::TeamThreadRange(team, 0, (int)loc_Nf), [=](int f) {
54219be780dSMark Adams                 //for (int f = 0; f < loc_Nf; ++f) {
54319be780dSMark Adams                 Kokkos::parallel_for(Kokkos::ThreadVectorRange(team, 0, (int)Nb), [=](int b) {
54419be780dSMark Adams                   //for (int b = 0; b < Nb; ++b) {
54519be780dSMark Adams                   LandauIdx idx = maps[grid]->gIdx[loc_elem][f][b];
546af0767daSMark Adams                   if (idx >= 0) {
54719be780dSMark Adams                     coef[f * Nb + b] = d_vertex_f[idx + moffset]; // xarray data, not IP, need raw array to deal with CPU assemble case (not used)
548af0767daSMark Adams                   } else {
549af0767daSMark Adams                     idx              = -idx - 1;
55019be780dSMark Adams                     coef[f * Nb + b] = 0;
5518a6f2e61SMark Adams                     for (int q = 0; q < maps[grid]->num_face; q++) {
5528a6f2e61SMark Adams                       PetscInt    id    = maps[grid]->c_maps[idx][q].gid;
5538a6f2e61SMark Adams                       PetscScalar scale = maps[grid]->c_maps[idx][q].scale;
554f26f10aaSMark Adams                       if (id >= 0) coef[f * Nb + b] += scale * d_vertex_f[id + moffset];
555af0767daSMark Adams                     }
556af0767daSMark Adams                   }
55719be780dSMark Adams                 });
55819be780dSMark Adams               });
559af0767daSMark Adams             }
56019be780dSMark Adams             team.team_barrier();
561a587d139SMark             Kokkos::parallel_for(Kokkos::TeamThreadRange(team, 0, Nq), [=](int myQi) {
5628fdabdddSMark Adams               const PetscReal *const invJ = &invJe[myQi * dim * dim]; // b_elem_idx: batch element index
563a587d139SMark               const PetscReal       *Bq = &d_BB[myQi * Nb], *Dq = &d_DD[myQi * Nb * dim];
5648fdabdddSMark Adams               Kokkos::parallel_for(Kokkos::ThreadVectorRange(team, 0, (int)loc_Nf), [=](int f) {
565a587d139SMark                 PetscInt       b, e, d;
566e8d2b73aSMark Adams                 PetscReal      refSpaceDer[LANDAU_DIM];
5678fdabdddSMark Adams                 const PetscInt idx    = d_ipf_offset[grid] + f * loc_nip + loc_elem * Nq + myQi;
5688fdabdddSMark Adams                 d_fdf_k(b_id, 0, idx) = 0.0;
569a587d139SMark                 for (d = 0; d < LANDAU_DIM; ++d) refSpaceDer[d] = 0.0;
570a587d139SMark                 for (b = 0; b < Nb; ++b) {
57119be780dSMark Adams                   d_fdf_k(b_id, 0, idx) += Bq[b] * PetscRealPart(coef[f * Nb + b]);
57219be780dSMark Adams                   for (d = 0; d < dim; ++d) refSpaceDer[d] += Dq[b * dim + d] * PetscRealPart(coef[f * Nb + b]);
573a587d139SMark                 }
574a587d139SMark                 for (d = 0; d < dim; ++d) {
575ad540459SPierre Jolivet                   for (e = 0, d_fdf_k(b_id, d + 1, idx) = 0.0; e < dim; ++e) d_fdf_k(b_id, d + 1, idx) += invJ[e * dim + d] * refSpaceDer[e];
576a587d139SMark                 }
5778a6f2e61SMark Adams               }); // f
5788a6f2e61SMark Adams             });   // myQi
5798a6f2e61SMark Adams           }
58019be780dSMark Adams           team.team_barrier();
58119be780dSMark Adams         } // 'grid' scope
5828a6f2e61SMark Adams       }); // global elems - fdf
5838a6f2e61SMark Adams     Kokkos::fence();
584bfbbad94Smarkadams4     PetscCall(PetscLogGpuTimeEnd());
5859566063dSJacob Faibussowitsch     PetscCall(PetscLogEventEnd(events[8], 0, 0, 0, 0));
586e6118d12SMark Adams     // Jacobian
5876f2c871aSStefano Zampini     size_t      maximum_shared_mem_size = 64000;
588a16fd2c9SJacob Faibussowitsch     PetscDevice device;
589a16fd2c9SJacob Faibussowitsch 
590a16fd2c9SJacob Faibussowitsch     PetscCall(PetscDeviceGetDefault_Internal(&device));
591a16fd2c9SJacob Faibussowitsch     PetscCall(PetscDeviceGetAttribute(device, PETSC_DEVICE_ATTR_SIZE_T_SHARED_MEM_PER_BLOCK, &maximum_shared_mem_size));
5926f2c871aSStefano Zampini     size_t    jac_scr_bytes    = (size_t)2 * (g2_scr_t::shmem_size(dim, Nf_max, Nq) + g3_scr_t::shmem_size(dim, dim, Nf_max, Nq));
593d9008a5dSMark Adams     const int jac_shared_level = (jac_scr_bytes > maximum_shared_mem_size) ? 1 : KOKKOS_SHARED_LEVEL;
594ae6bf4a8Smarkadams4     // device function/lambda
595d71ae5a4SJacob Faibussowitsch     auto jac_lambda = KOKKOS_LAMBDA(const team_member team)
596d71ae5a4SJacob Faibussowitsch     {
5978fdabdddSMark Adams       const PetscInt b_Nelem = d_elem_offset[num_grids], b_elem_idx = team.league_rank() % b_Nelem, b_id = team.league_rank() / b_Nelem;
5988a6f2e61SMark Adams       // find my grid
5998fdabdddSMark Adams       PetscInt grid = 0;
6008fdabdddSMark Adams       while (b_elem_idx >= d_elem_offset[grid + 1]) grid++;
6018a6f2e61SMark Adams       {
60219be780dSMark Adams         const PetscInt loc_Nf = d_species_offset[grid + 1] - d_species_offset[grid], loc_elem = b_elem_idx - d_elem_offset[grid];
6038fdabdddSMark Adams         const PetscInt moffset = LAND_MOFFSET(b_id, grid, batch_sz, num_grids, d_mat_offset);
604bfbbad94Smarkadams4         const PetscInt f_off   = d_species_offset[grid];
605bfbbad94Smarkadams4   #ifdef LAND_SUPPORT_CPU_ASS
606f44ea33cSmarkadams4         const PetscInt totDim  = loc_Nf * Nb;
607bfbbad94Smarkadams4   #endif
608d9008a5dSMark Adams         g2_scr_t       g2(team.team_scratch(jac_shared_level), dim, loc_Nf, Nq);
609d9008a5dSMark Adams         g3_scr_t       g3(team.team_scratch(jac_shared_level), dim, dim, loc_Nf, Nq);
610d9008a5dSMark Adams         g2_scr_t       gg2(team.team_scratch(jac_shared_level), dim, loc_Nf, Nq);
611d9008a5dSMark Adams         g3_scr_t       gg3(team.team_scratch(jac_shared_level), dim, dim, loc_Nf, Nq);
612e0eea495SMark         // get g2[] & g3[]
613e0eea495SMark         Kokkos::parallel_for(Kokkos::TeamThreadRange(team, 0, Nq), [=](int myQi) {
614e0eea495SMark           using Kokkos::parallel_reduce;
6158fdabdddSMark Adams           const PetscInt                    jpidx_glb = d_ip_offset[grid] + loc_elem * Nq + myQi;
6168fdabdddSMark Adams           const PetscReal                  *invJ      = &d_invJ_k(jpidx_glb * dim * dim);
6178fdabdddSMark Adams           const PetscReal                   vj[3] = {d_x[jpidx_glb], d_y[jpidx_glb], d_z ? d_z[jpidx_glb] : 0}, wj = d_w[jpidx_glb];
6188a6f2e61SMark Adams           landau_inner_red::TensorValueType gg_temp; // reduce on part of gg2 and g33 for IP jpidx_g
6199371c9d4SSatish Balay           Kokkos::parallel_reduce(
6209371c9d4SSatish Balay             Kokkos::ThreadVectorRange(team, (int)d_ip_offset[num_grids]),
6219371c9d4SSatish Balay             [=](const int &ipidx, landau_inner_red::TensorValueType &ggg) {
622e8d2b73aSMark Adams               const PetscReal wi = d_w[ipidx], x = d_x[ipidx], y = d_y[ipidx];
62352cdd6eaSMark               PetscReal       temp1[3] = {0, 0, 0}, temp2 = 0;
6246b664d00Smarkadams4               PetscInt        fieldB, d2, d3, f_off_r, grid_r, ipidx_g, nip_loc_r, loc_Nf_r;
625e0eea495SMark   #if LANDAU_DIM == 2
6268a6f2e61SMark Adams               PetscReal       Ud[2][2], Uk[2][2], mask = (PetscAbs(vj[0] - x) < 100 * PETSC_SQRT_MACHINE_EPSILON && PetscAbs(vj[1] - y) < 100 * PETSC_SQRT_MACHINE_EPSILON) ? 0. : 1.;
6278a6f2e61SMark Adams               LandauTensor2D(vj, x, y, Ud, Uk, mask);
62852cdd6eaSMark   #else
6297620afa1SMark Adams                 PetscReal U[3][3], z = d_z[ipidx], mask = (PetscAbs(vj[0]-x) < 100*PETSC_SQRT_MACHINE_EPSILON && PetscAbs(vj[1]-y) < 100*PETSC_SQRT_MACHINE_EPSILON && PetscAbs(vj[2]-z) < 100*PETSC_SQRT_MACHINE_EPSILON) ? 0. : 1.;
6308a6f2e61SMark Adams                 LandauTensor3D(vj, x, y, z, U, mask);
63152cdd6eaSMark   #endif
6328a6f2e61SMark Adams               grid_r = 0;
6338a6f2e61SMark Adams               while (ipidx >= d_ip_offset[grid_r + 1]) grid_r++; // yuck search for grid
6348a6f2e61SMark Adams               f_off_r   = d_species_offset[grid_r];
6358a6f2e61SMark Adams               ipidx_g   = ipidx - d_ip_offset[grid_r];
6368a6f2e61SMark Adams               nip_loc_r = d_numCells[grid_r] * Nq;
6378fdabdddSMark Adams               loc_Nf_r  = d_species_offset[grid_r + 1] - d_species_offset[grid_r];
638ae6bf4a8Smarkadams4               for (fieldB = 0; fieldB < loc_Nf_r; ++fieldB) { // fieldB is \beta  d_lambdas[grid][grid_r]
6396b664d00Smarkadams4                 const PetscInt  idx = d_ipf_offset[grid_r] + fieldB * nip_loc_r + ipidx_g;
64087ece978Smarkadams4                 const PetscReal ff1 = d_beta[fieldB + f_off_r] * d_lambdas[LANDAU_MAX_GRIDS * grid + grid_r], ff2 = d_invMass[fieldB + f_off_r] * ff1;
64187ece978Smarkadams4                 temp1[0] += d_fdf_k(b_id, 1, idx) * ff2;
64287ece978Smarkadams4                 temp1[1] += d_fdf_k(b_id, 2, idx) * ff2;
64352cdd6eaSMark   #if LANDAU_DIM == 3
64487ece978Smarkadams4                 temp1[2] += d_fdf_k(b_id, 3, idx) * ff2;
64552cdd6eaSMark   #endif
64687ece978Smarkadams4                 temp2 += d_fdf_k(b_id, 0, idx) * ff1;
64752cdd6eaSMark               }
64852cdd6eaSMark               temp1[0] *= wi;
64952cdd6eaSMark               temp1[1] *= wi;
65052cdd6eaSMark   #if LANDAU_DIM == 3
65152cdd6eaSMark               temp1[2] *= wi;
65252cdd6eaSMark   #endif
65352cdd6eaSMark               temp2 *= wi;
65452cdd6eaSMark   #if LANDAU_DIM == 2
65552cdd6eaSMark               for (d2 = 0; d2 < 2; d2++) {
656e0eea495SMark                 for (d3 = 0; d3 < 2; ++d3) {
657e0eea495SMark                   /* K = U * grad(f): g2=e: i,A */
65852cdd6eaSMark                   ggg.gg2[d2] += Uk[d2][d3] * temp1[d3];
659e0eea495SMark                   /* D = -U * (I \kron (fx)): g3=f: i,j,A */
66052cdd6eaSMark                   ggg.gg3[d2][d3] += Ud[d2][d3] * temp2;
661e0eea495SMark                 }
662e0eea495SMark               }
663e0eea495SMark   #else
664e0eea495SMark                 for (d2 = 0; d2 < 3; ++d2) {
665e0eea495SMark                   for (d3 = 0; d3 < 3; ++d3) {
666e0eea495SMark                     /* K = U * grad(f): g2 = e: i,A */
66752cdd6eaSMark                     ggg.gg2[d2] += U[d2][d3]*temp1[d3];
668e0eea495SMark                     /* D = -U * (I \kron (fx)): g3 = f: i,j,A */
66952cdd6eaSMark                     ggg.gg3[d2][d3] += U[d2][d3]*temp2;
670e0eea495SMark                   }
671e0eea495SMark                 }
672e0eea495SMark   #endif
6739371c9d4SSatish Balay             },
6749371c9d4SSatish Balay             Kokkos::Sum<landau_inner_red::TensorValueType>(gg_temp));
67552cdd6eaSMark           // add alpha and put in gg2/3
6766b664d00Smarkadams4           Kokkos::parallel_for(Kokkos::ThreadVectorRange(team, (int)loc_Nf), [&](const int &fieldA) { // \alpha
67752cdd6eaSMark             PetscInt d2, d3;
67852cdd6eaSMark             for (d2 = 0; d2 < dim; d2++) {
6798a6f2e61SMark Adams               gg2(d2, fieldA, myQi) = gg_temp.gg2[d2] * d_alpha[fieldA + f_off];
680ad540459SPierre Jolivet               for (d3 = 0; d3 < dim; d3++) gg3(d2, d3, fieldA, myQi) = -gg_temp.gg3[d2][d3] * d_alpha[fieldA + f_off] * d_invMass[fieldA + f_off];
68152cdd6eaSMark             }
682e0eea495SMark           });
68352cdd6eaSMark           /* add electric field term once per IP */
6849371c9d4SSatish Balay           Kokkos::parallel_for(Kokkos::ThreadVectorRange(team, (int)loc_Nf), [&](const int &fieldA) { gg2(dim - 1, fieldA, myQi) += d_Eq_m[fieldA + f_off]; });
6858fdabdddSMark Adams           Kokkos::parallel_for(Kokkos::ThreadVectorRange(team, (int)loc_Nf), [=](const int &fieldA) {
686e0eea495SMark             int d, d2, d3, dp;
687e0eea495SMark             /* Jacobian transform - g2, g3 - per thread (2D) */
688e0eea495SMark             for (d = 0; d < dim; ++d) {
68952cdd6eaSMark               g2(d, fieldA, myQi) = 0;
690e0eea495SMark               for (d2 = 0; d2 < dim; ++d2) {
6918fdabdddSMark Adams                 g2(d, fieldA, myQi) += invJ[d * dim + d2] * gg2(d2, fieldA, myQi);
69252cdd6eaSMark                 g3(d, d2, fieldA, myQi) = 0;
693e0eea495SMark                 for (d3 = 0; d3 < dim; ++d3) {
694ad540459SPierre Jolivet                   for (dp = 0; dp < dim; ++dp) g3(d, d2, fieldA, myQi) += invJ[d * dim + d3] * gg3(d3, dp, fieldA, myQi) * invJ[d2 * dim + dp];
695e0eea495SMark                 }
69652cdd6eaSMark                 g3(d, d2, fieldA, myQi) *= wj;
697e0eea495SMark               }
69852cdd6eaSMark               g2(d, fieldA, myQi) *= wj;
699e0eea495SMark             }
700e0eea495SMark           });
70152cdd6eaSMark         }); // Nq
702e0eea495SMark         team.team_barrier();
7031eec90e4SMark Adams         { /* assemble */
7048fdabdddSMark Adams           for (PetscInt fieldA = 0; fieldA < loc_Nf; fieldA++) {
705930e68a5SMark Adams             /* assemble */
7061eec90e4SMark Adams             Kokkos::parallel_for(Kokkos::TeamThreadRange(team, 0, Nb), [=](int f) {
7071eec90e4SMark Adams               Kokkos::parallel_for(Kokkos::ThreadVectorRange(team, 0, Nb), [=](int g) {
7081eec90e4SMark Adams                 PetscScalar t = 0;
7091eec90e4SMark Adams                 for (int qj = 0; qj < Nq; qj++) { // look at others integration points
710e0eea495SMark                   const PetscReal *BJq = &d_BB[qj * Nb], *DIq = &d_DD[qj * Nb * dim];
7111eec90e4SMark Adams                   for (int d = 0; d < dim; ++d) {
7121eec90e4SMark Adams                     t += DIq[f * dim + d] * g2(d, fieldA, qj) * BJq[g];
713ad540459SPierre Jolivet                     for (int d2 = 0; d2 < dim; ++d2) t += DIq[f * dim + d] * g3(d, d2, fieldA, qj) * DIq[g * dim + d2];
714e0eea495SMark                   }
715930e68a5SMark Adams                 }
7168a6f2e61SMark Adams                 if (elem_mat_num_cells_max_grid) { // CPU assembly
717bfbbad94Smarkadams4   #ifdef LAND_SUPPORT_CPU_ASS
7181eec90e4SMark Adams                   const PetscInt fOff                     = (fieldA * Nb + f) * totDim + fieldA * Nb + g;
7198fdabdddSMark Adams                   d_elem_mats(b_id, grid, loc_elem, fOff) = t;
720bfbbad94Smarkadams4   #endif
72119be780dSMark Adams                 } else {
7224c55d725SMark Adams                   static_cast<void>(landau_mat_assemble(d_coo_vals, t, f, g, Nb, moffset, loc_elem, fieldA, maps[grid], d_coo_elem_offsets, d_coo_elem_fullNb, d_coo_elem_point_offsets, b_elem_idx, b_id * coo_sz_batch));
72319be780dSMark Adams                 }
7241eec90e4SMark Adams               });
7251eec90e4SMark Adams             });
7261eec90e4SMark Adams           }
727a587d139SMark         }
72819be780dSMark Adams       } // scope with 'grid'
72981451871SMark Adams     };
7309566063dSJacob Faibussowitsch     PetscCall(PetscLogEventBegin(events[4], 0, 0, 0, 0));
7319566063dSJacob Faibussowitsch     PetscCall(PetscLogGpuTimeBegin());
7322d93f1a5SMark Adams     PetscCall(PetscInfo(plex[0], "Jacobian shared memory size: %zu bytes in level %s (max shared=%zu), num cells total=%d, team size=%d, vector size=%d, #face=%d, Nf_max=%d\n", jac_scr_bytes, jac_shared_level == 0 ? "local" : "global", maximum_shared_mem_size, (int)(num_cells_batch * batch_sz), team_size, vector_size, nfaces, (int)Nf_max));
733d9008a5dSMark Adams     Kokkos::parallel_for("Jacobian", Kokkos::TeamPolicy<>(num_cells_batch * batch_sz, team_size, vector_size).set_scratch_size(jac_shared_level, Kokkos::PerTeam(jac_scr_bytes)), jac_lambda); // Kokkos::LaunchBounds<512,2>
734d9008a5dSMark Adams     Kokkos::fence();
7359566063dSJacob Faibussowitsch     PetscCall(PetscLogGpuTimeEnd());
7369566063dSJacob Faibussowitsch     PetscCall(PetscLogEventEnd(events[4], 0, 0, 0, 0));
73719be780dSMark Adams     if (d_vertex_f_k) delete d_vertex_f_k;
738dbabbaf5SMark Adams   } else { // mass
7399566063dSJacob Faibussowitsch     PetscCall(PetscLogEventBegin(events[16], 0, 0, 0, 0));
7409566063dSJacob Faibussowitsch     PetscCall(PetscLogGpuTimeBegin());
741dbabbaf5SMark Adams     PetscCall(PetscInfo(plex[0], "Mass team size=%d vector size=%d #face=%d Nb=%" PetscInt_FMT ", %s assembly\n", team_size, vector_size, nfaces, Nb, d_coo_vals ? "COO" : "CSR"));
7429371c9d4SSatish Balay     Kokkos::parallel_for(
7439371c9d4SSatish Balay       "Mass", Kokkos::TeamPolicy<>(num_cells_batch * batch_sz, team_size, vector_size), KOKKOS_LAMBDA(const team_member team) { // Kokkos::LaunchBounds<512,4>
7448fdabdddSMark Adams         const PetscInt b_Nelem = d_elem_offset[num_grids], b_elem_idx = team.league_rank() % b_Nelem, b_id = team.league_rank() / b_Nelem;
7458a6f2e61SMark Adams         // find my grid
7468fdabdddSMark Adams         PetscInt grid = 0;
7478fdabdddSMark Adams         while (b_elem_idx >= d_elem_offset[grid + 1]) grid++;
7488a6f2e61SMark Adams         {
749bfbbad94Smarkadams4           const PetscInt loc_Nf = d_species_offset[grid + 1] - d_species_offset[grid], loc_elem = b_elem_idx - d_elem_offset[grid], jpidx_0 = d_ip_offset[grid] + loc_elem * Nq;
750bfbbad94Smarkadams4   #ifdef LAND_SUPPORT_CPU_ASS
751f44ea33cSmarkadams4           const PetscInt totDim  = loc_Nf * Nb;
752bfbbad94Smarkadams4   #endif
7538fdabdddSMark Adams           const PetscInt moffset = LAND_MOFFSET(b_id, grid, batch_sz, num_grids, d_mat_offset);
7548fdabdddSMark Adams           for (int fieldA = 0; fieldA < loc_Nf; fieldA++) {
7551eec90e4SMark Adams             /* assemble */
7561eec90e4SMark Adams             Kokkos::parallel_for(Kokkos::TeamThreadRange(team, 0, Nb), [=](int f) {
7571eec90e4SMark Adams               Kokkos::parallel_for(Kokkos::ThreadVectorRange(team, 0, Nb), [=](int g) {
7581eec90e4SMark Adams                 PetscScalar t = 0;
7591eec90e4SMark Adams                 for (int qj = 0; qj < Nq; qj++) { // look at others integration points
7601eec90e4SMark Adams                   const PetscReal *BJq       = &d_BB[qj * Nb];
7618fdabdddSMark Adams                   const PetscInt   jpidx_glb = jpidx_0 + qj;
7628a6f2e61SMark Adams                   if (dim == 2) {
7638fdabdddSMark Adams                     t += BJq[f] * d_w_k(jpidx_glb) * shift * BJq[g] * 2. * PETSC_PI;
7648a6f2e61SMark Adams                   } else {
7658fdabdddSMark Adams                     t += BJq[f] * d_w_k(jpidx_glb) * shift * BJq[g];
7661eec90e4SMark Adams                   }
7678a6f2e61SMark Adams                 }
7688a6f2e61SMark Adams                 if (elem_mat_num_cells_max_grid) {
769bfbbad94Smarkadams4   #ifdef LAND_SUPPORT_CPU_ASS
7701eec90e4SMark Adams                   const PetscInt fOff                     = (fieldA * Nb + f) * totDim + fieldA * Nb + g;
7718fdabdddSMark Adams                   d_elem_mats(b_id, grid, loc_elem, fOff) = t;
772bfbbad94Smarkadams4   #endif
773ad4b5651SMark Adams                 } else {
7744c55d725SMark Adams                   static_cast<void>(landau_mat_assemble(d_coo_vals, t, f, g, Nb, moffset, loc_elem, fieldA, maps[grid], d_coo_elem_offsets, d_coo_elem_fullNb, d_coo_elem_point_offsets, b_elem_idx, b_id * coo_sz_batch));
775ad4b5651SMark Adams                 }
776e0eea495SMark               });
777e0eea495SMark             });
77813241b68SMark Adams           } // field
77913241b68SMark Adams         }   // grid
7801eec90e4SMark Adams       });
781d9008a5dSMark Adams     Kokkos::fence();
7829566063dSJacob Faibussowitsch     PetscCall(PetscLogGpuTimeEnd());
7839566063dSJacob Faibussowitsch     PetscCall(PetscLogEventEnd(events[16], 0, 0, 0, 0));
7841eec90e4SMark Adams   }
785bfc784b7SMark Adams   if (d_coo_vals) {
7869566063dSJacob Faibussowitsch     PetscCall(MatSetValuesCOO(JacP, d_coo_vals, ADD_VALUES));
787bfbbad94Smarkadams4   #ifndef LAND_SUPPORT_CPU_ASS
788bfbbad94Smarkadams4     Kokkos::fence();                        // for timers
789bfbbad94Smarkadams4   #endif
790bfc784b7SMark Adams   } else if (elem_mat_num_cells_max_grid) { // CPU assembly
791bfbbad94Smarkadams4   #ifdef LAND_SUPPORT_CPU_ASS
7928fdabdddSMark Adams     Kokkos::View<PetscScalar ****, Kokkos::LayoutRight>::HostMirror h_elem_mats = Kokkos::create_mirror_view(d_elem_mats);
793e0eea495SMark     Kokkos::deep_copy(h_elem_mats, d_elem_mats);
794d618d24fSMark Adams     PetscCheck(!container, PETSC_COMM_SELF, PETSC_ERR_PLIB, "?????");
7958fdabdddSMark Adams     for (PetscInt b_id = 0; b_id < batch_sz; b_id++) { // OpenMP (once)
7968a6f2e61SMark Adams       for (PetscInt grid = 0; grid < num_grids; grid++) {
7978a6f2e61SMark Adams         PetscSection       section, globalSection;
7988a6f2e61SMark Adams         PetscInt           cStart, cEnd;
7998fdabdddSMark Adams         Mat                B       = subJ[LAND_PACK_IDX(b_id, grid)];
8008fdabdddSMark Adams         PetscInt           moffset = LAND_MOFFSET(b_id, grid, batch_sz, num_grids, a_mat_offset), nloc, nzl, colbuf[1024], row;
8018fdabdddSMark Adams         const PetscInt    *cols;
8028fdabdddSMark Adams         const PetscScalar *vals;
8039566063dSJacob Faibussowitsch         PetscCall(PetscLogEventBegin(events[5], 0, 0, 0, 0));
8049566063dSJacob Faibussowitsch         PetscCall(DMPlexGetHeightStratum(plex[grid], 0, &cStart, &cEnd));
8059566063dSJacob Faibussowitsch         PetscCall(DMGetLocalSection(plex[grid], &section));
8069566063dSJacob Faibussowitsch         PetscCall(DMGetGlobalSection(plex[grid], &globalSection));
8079566063dSJacob Faibussowitsch         PetscCall(PetscLogEventEnd(events[5], 0, 0, 0, 0));
8089566063dSJacob Faibussowitsch         PetscCall(PetscLogEventBegin(events[6], 0, 0, 0, 0));
8098a6f2e61SMark Adams         for (PetscInt ej = cStart; ej < cEnd; ++ej) {
8108fdabdddSMark Adams           const PetscScalar *elMat = &h_elem_mats(b_id, grid, ej - cStart, 0);
8119566063dSJacob Faibussowitsch           PetscCall(DMPlexMatSetClosure(plex[grid], section, globalSection, B, ej, elMat, ADD_VALUES));
8128a6f2e61SMark Adams           if (grid == 0 && ej == -1) {
813f44ea33cSmarkadams4             const PetscInt loc_Nf = a_species_offset[grid + 1] - a_species_offset[grid], totDim = loc_Nf * Nb;
814e0eea495SMark             int            d, f;
8158a6f2e61SMark Adams             PetscPrintf(PETSC_COMM_SELF, "Kokkos Element matrix %d/%d\n", 1, (int)a_numCells[grid]);
816e0eea495SMark             for (d = 0; d < totDim; ++d) {
81752cdd6eaSMark               for (f = 0; f < totDim; ++f) PetscPrintf(PETSC_COMM_SELF, " %12.5e", PetscRealPart(elMat[d * totDim + f]));
81852cdd6eaSMark               PetscPrintf(PETSC_COMM_SELF, "\n");
819e0eea495SMark             }
820e8d2b73aSMark Adams             exit(14);
821e0eea495SMark           }
822e0eea495SMark         }
8238fdabdddSMark Adams         // move nest matrix to global JacP
8249566063dSJacob Faibussowitsch         PetscCall(MatAssemblyBegin(B, MAT_FINAL_ASSEMBLY));
8259566063dSJacob Faibussowitsch         PetscCall(MatAssemblyEnd(B, MAT_FINAL_ASSEMBLY));
8269566063dSJacob Faibussowitsch         PetscCall(MatGetSize(B, &nloc, NULL));
8278a6f2e61SMark Adams         for (int i = 0; i < nloc; i++) {
8289566063dSJacob Faibussowitsch           PetscCall(MatGetRow(B, i, &nzl, &cols, &vals));
82963a3b9bcSJacob Faibussowitsch           PetscCheck(nzl <= 1024, PetscObjectComm((PetscObject)B), PETSC_ERR_PLIB, "Row too big: %" PetscInt_FMT, nzl);
8308a6f2e61SMark Adams           for (int j = 0; j < nzl; j++) colbuf[j] = cols[j] + moffset;
8318a6f2e61SMark Adams           row = i + moffset;
8329566063dSJacob Faibussowitsch           PetscCall(MatSetValues(JacP, 1, &row, nzl, colbuf, vals, ADD_VALUES));
8339566063dSJacob Faibussowitsch           PetscCall(MatRestoreRow(B, i, &nzl, &cols, &vals));
8348a6f2e61SMark Adams         }
8359566063dSJacob Faibussowitsch         PetscCall(MatDestroy(&subJ[LAND_PACK_IDX(b_id, grid)]));
8369566063dSJacob Faibussowitsch         PetscCall(PetscLogEventEnd(events[6], 0, 0, 0, 0));
8378a6f2e61SMark Adams       } // grids
838a587d139SMark     }
839bfbbad94Smarkadams4   #else
840bfbbad94Smarkadams4     SETERRQ(PETSC_COMM_SELF, PETSC_ERR_PLIB, "CPU assembly not supported");
841bfbbad94Smarkadams4   #endif
8428fdabdddSMark Adams   }
8433ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
844e0eea495SMark }
845e0eea495SMark } // extern "C"
8468d80707aSStefano Zampini #endif
847