1dd5b3ca6SJunchao Zhang #include <../src/vec/is/sf/impls/basic/allgatherv/sfallgatherv.h> 2dd5b3ca6SJunchao Zhang 3dd5b3ca6SJunchao Zhang /* PetscSFGetGraph is non-collective. An implementation should not have collective calls */ 4d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode PetscSFGetGraph_Allgatherv(PetscSF sf, PetscInt *nroots, PetscInt *nleaves, const PetscInt **ilocal, const PetscSFNode **iremote) 5d71ae5a4SJacob Faibussowitsch { 6dd5b3ca6SJunchao Zhang PetscInt i, j, k; 7dd5b3ca6SJunchao Zhang const PetscInt *range; 8dd5b3ca6SJunchao Zhang PetscMPIInt size; 9dd5b3ca6SJunchao Zhang 10dd5b3ca6SJunchao Zhang PetscFunctionBegin; 119566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)sf), &size)); 12dd5b3ca6SJunchao Zhang if (nroots) *nroots = sf->nroots; 13dd5b3ca6SJunchao Zhang if (nleaves) *nleaves = sf->nleaves; 14dd5b3ca6SJunchao Zhang if (ilocal) *ilocal = NULL; /* Contiguous leaves */ 15dd5b3ca6SJunchao Zhang if (iremote) { 16dd5b3ca6SJunchao Zhang if (!sf->remote && sf->nleaves) { /* The && sf->nleaves makes sfgatherv able to inherit this routine */ 179566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRanges(sf->map, &range)); 189566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(sf->nleaves, &sf->remote)); 19dd5b3ca6SJunchao Zhang sf->remote_alloc = sf->remote; 20dd5b3ca6SJunchao Zhang for (i = 0; i < size; i++) { 21dd5b3ca6SJunchao Zhang for (j = range[i], k = 0; j < range[i + 1]; j++, k++) { 22dd5b3ca6SJunchao Zhang sf->remote[j].rank = i; 23dd5b3ca6SJunchao Zhang sf->remote[j].index = k; 24dd5b3ca6SJunchao Zhang } 25dd5b3ca6SJunchao Zhang } 26dd5b3ca6SJunchao Zhang } 27dd5b3ca6SJunchao Zhang *iremote = sf->remote; 28dd5b3ca6SJunchao Zhang } 293ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 30dd5b3ca6SJunchao Zhang } 31dd5b3ca6SJunchao Zhang 32d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode PetscSFSetUp_Allgatherv(PetscSF sf) 33d71ae5a4SJacob Faibussowitsch { 34dd5b3ca6SJunchao Zhang PetscSF_Allgatherv *dat = (PetscSF_Allgatherv *)sf->data; 35dd5b3ca6SJunchao Zhang PetscMPIInt size; 36dd5b3ca6SJunchao Zhang PetscInt i; 37dd5b3ca6SJunchao Zhang const PetscInt *range; 3866100624SStefano Zampini MPI_Comm comm; 39dd5b3ca6SJunchao Zhang 40dd5b3ca6SJunchao Zhang PetscFunctionBegin; 419566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp_Allgather(sf)); 4266100624SStefano Zampini PetscCall(PetscObjectGetComm((PetscObject)sf, &comm)); 4366100624SStefano Zampini PetscCallMPI(MPI_Comm_size(comm, &size)); 44dd5b3ca6SJunchao Zhang if (sf->nleaves) { /* This if (sf->nleaves) test makes sfgatherv able to inherit this routine */ 4566100624SStefano Zampini PetscBool isallgatherv = PETSC_FALSE; 4666100624SStefano Zampini 479566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &dat->recvcounts)); 489566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &dat->displs)); 499566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRanges(sf->map, &range)); 50dd5b3ca6SJunchao Zhang 51dd5b3ca6SJunchao Zhang for (i = 0; i < size; i++) { 529566063dSJacob Faibussowitsch PetscCall(PetscMPIIntCast(range[i], &dat->displs[i])); 539566063dSJacob Faibussowitsch PetscCall(PetscMPIIntCast(range[i + 1] - range[i], &dat->recvcounts[i])); 54dd5b3ca6SJunchao Zhang } 5566100624SStefano Zampini 5666100624SStefano Zampini /* check if we actually have a one-to-all pattern */ 5766100624SStefano Zampini PetscCall(PetscObjectTypeCompare((PetscObject)sf, PETSCSFALLGATHERV, &isallgatherv)); 5866100624SStefano Zampini if (isallgatherv) { 5966100624SStefano Zampini PetscMPIInt rank, nRanksWithZeroRoots; 6066100624SStefano Zampini 6166100624SStefano Zampini nRanksWithZeroRoots = (sf->nroots == 0) ? 1 : 0; /* I have no roots */ 62712fec58SPierre Jolivet PetscCallMPI(MPI_Allreduce(MPI_IN_PLACE, &nRanksWithZeroRoots, 1, MPI_INT, MPI_SUM, comm)); 6366100624SStefano Zampini if (nRanksWithZeroRoots == size - 1) { /* Only one rank has roots, which indicates a bcast pattern */ 6466100624SStefano Zampini dat->bcast_pattern = PETSC_TRUE; 6566100624SStefano Zampini PetscCallMPI(MPI_Comm_rank(comm, &rank)); 6666100624SStefano Zampini dat->bcast_root = sf->nroots > 0 ? rank : -1; 67712fec58SPierre Jolivet PetscCallMPI(MPI_Allreduce(MPI_IN_PLACE, &dat->bcast_root, 1, MPI_INT, MPI_MAX, comm)); 6866100624SStefano Zampini } 6966100624SStefano Zampini } 70dd5b3ca6SJunchao Zhang } 713ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 72dd5b3ca6SJunchao Zhang } 73dd5b3ca6SJunchao Zhang 74d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode PetscSFReset_Allgatherv(PetscSF sf) 75d71ae5a4SJacob Faibussowitsch { 76eb02082bSJunchao Zhang PetscSF_Allgatherv *dat = (PetscSF_Allgatherv *)sf->data; 7771438e86SJunchao Zhang PetscSFLink link = dat->avail, next; 78dd5b3ca6SJunchao Zhang 79dd5b3ca6SJunchao Zhang PetscFunctionBegin; 809566063dSJacob Faibussowitsch PetscCall(PetscFree(dat->iranks)); 819566063dSJacob Faibussowitsch PetscCall(PetscFree(dat->ioffset)); 829566063dSJacob Faibussowitsch PetscCall(PetscFree(dat->irootloc)); 839566063dSJacob Faibussowitsch PetscCall(PetscFree(dat->recvcounts)); 849566063dSJacob Faibussowitsch PetscCall(PetscFree(dat->displs)); 8528b400f6SJacob Faibussowitsch PetscCheck(!dat->inuse, PetscObjectComm((PetscObject)sf), PETSC_ERR_ARG_WRONGSTATE, "Outstanding operation has not been completed"); 869371c9d4SSatish Balay for (; link; link = next) { 879371c9d4SSatish Balay next = link->next; 889371c9d4SSatish Balay PetscCall(PetscSFLinkDestroy(sf, link)); 899371c9d4SSatish Balay } 9071438e86SJunchao Zhang dat->avail = NULL; 913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 92dd5b3ca6SJunchao Zhang } 93dd5b3ca6SJunchao Zhang 94d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode PetscSFDestroy_Allgatherv(PetscSF sf) 95d71ae5a4SJacob Faibussowitsch { 96dd5b3ca6SJunchao Zhang PetscFunctionBegin; 979566063dSJacob Faibussowitsch PetscCall(PetscSFReset_Allgatherv(sf)); 989566063dSJacob Faibussowitsch PetscCall(PetscFree(sf->data)); 993ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 100dd5b3ca6SJunchao Zhang } 101dd5b3ca6SJunchao Zhang 102d71ae5a4SJacob Faibussowitsch static PetscErrorCode PetscSFBcastBegin_Allgatherv(PetscSF sf, MPI_Datatype unit, PetscMemType rootmtype, const void *rootdata, PetscMemType leafmtype, void *leafdata, MPI_Op op) 103d71ae5a4SJacob Faibussowitsch { 104cd620004SJunchao Zhang PetscSFLink link; 10566100624SStefano Zampini PetscMPIInt sendcount, rank; 106dd5b3ca6SJunchao Zhang MPI_Comm comm; 107cd620004SJunchao Zhang void *rootbuf = NULL, *leafbuf = NULL; 108f5d27ee7SJunchao Zhang MPI_Request *req = NULL; 109dd5b3ca6SJunchao Zhang PetscSF_Allgatherv *dat = (PetscSF_Allgatherv *)sf->data; 110dd5b3ca6SJunchao Zhang 111dd5b3ca6SJunchao Zhang PetscFunctionBegin; 1129566063dSJacob Faibussowitsch PetscCall(PetscSFLinkCreate(sf, unit, rootmtype, rootdata, leafmtype, leafdata, op, PETSCSF_BCAST, &link)); 1139566063dSJacob Faibussowitsch PetscCall(PetscSFLinkPackRootData(sf, link, PETSCSF_REMOTE, rootdata)); 1149566063dSJacob Faibussowitsch PetscCall(PetscSFLinkCopyRootBufferInCaseNotUseGpuAwareMPI(sf, link, PETSC_TRUE /* device2host before sending */)); 1159566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)sf, &comm)); 11666100624SStefano Zampini PetscCallMPI(MPI_Comm_rank(comm, &rank)); 1179566063dSJacob Faibussowitsch PetscCall(PetscMPIIntCast(sf->nroots, &sendcount)); 1189566063dSJacob Faibussowitsch PetscCall(PetscSFLinkGetMPIBuffersAndRequests(sf, link, PETSCSF_ROOT2LEAF, &rootbuf, &leafbuf, &req, NULL)); 11966100624SStefano Zampini 12066100624SStefano Zampini if (dat->bcast_pattern && rank == dat->bcast_root) PetscCall((*link->Memcpy)(link, link->leafmtype_mpi, leafbuf, link->rootmtype_mpi, rootbuf, (size_t)sendcount * link->unitbytes)); 12166100624SStefano Zampini /* Ready the buffers for MPI */ 122*646b835dSJunchao Zhang PetscCall(PetscSFLinkSyncStreamBeforeCallMPI(sf, link)); 12366100624SStefano Zampini if (dat->bcast_pattern) PetscCallMPI(MPIU_Ibcast(leafbuf, sf->nleaves, unit, dat->bcast_root, comm, req)); 12466100624SStefano Zampini else PetscCallMPI(MPIU_Iallgatherv(rootbuf, sendcount, unit, leafbuf, dat->recvcounts, dat->displs, unit, comm, req)); 1253ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 126855db38dSJunchao Zhang } 127855db38dSJunchao Zhang 128d71ae5a4SJacob Faibussowitsch static PetscErrorCode PetscSFReduceBegin_Allgatherv(PetscSF sf, MPI_Datatype unit, PetscMemType leafmtype, const void *leafdata, PetscMemType rootmtype, void *rootdata, MPI_Op op) 129d71ae5a4SJacob Faibussowitsch { 130cd620004SJunchao Zhang PetscSFLink link; 131dd5b3ca6SJunchao Zhang PetscSF_Allgatherv *dat = (PetscSF_Allgatherv *)sf->data; 132dd5b3ca6SJunchao Zhang PetscInt rstart; 133cd620004SJunchao Zhang PetscMPIInt rank, count, recvcount; 134dd5b3ca6SJunchao Zhang MPI_Comm comm; 135cd620004SJunchao Zhang void *rootbuf = NULL, *leafbuf = NULL; 136f5d27ee7SJunchao Zhang MPI_Request *req = NULL; 137dd5b3ca6SJunchao Zhang 138dd5b3ca6SJunchao Zhang PetscFunctionBegin; 1399566063dSJacob Faibussowitsch PetscCall(PetscSFLinkCreate(sf, unit, rootmtype, rootdata, leafmtype, leafdata, op, PETSCSF_REDUCE, &link)); 14083df288dSJunchao Zhang if (op == MPI_REPLACE) { 141cd620004SJunchao Zhang /* REPLACE is only meaningful when all processes have the same leafdata to reduce. Therefore copying from local leafdata is fine */ 1429566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(sf->map, &rstart, NULL)); 1439566063dSJacob Faibussowitsch PetscCall((*link->Memcpy)(link, rootmtype, rootdata, leafmtype, (const char *)leafdata + (size_t)rstart * link->unitbytes, (size_t)sf->nroots * link->unitbytes)); 1449566063dSJacob Faibussowitsch if (PetscMemTypeDevice(leafmtype) && PetscMemTypeHost(rootmtype)) PetscCall((*link->SyncStream)(link)); 145dd5b3ca6SJunchao Zhang } else { 1469566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)sf, &comm)); 1479566063dSJacob Faibussowitsch PetscCall(PetscSFLinkPackLeafData(sf, link, PETSCSF_REMOTE, leafdata)); 1489566063dSJacob Faibussowitsch PetscCall(PetscSFLinkCopyLeafBufferInCaseNotUseGpuAwareMPI(sf, link, PETSC_TRUE /* device2host before sending */)); 1499566063dSJacob Faibussowitsch PetscCall(PetscSFLinkGetMPIBuffersAndRequests(sf, link, PETSCSF_LEAF2ROOT, &rootbuf, &leafbuf, &req, NULL)); 150*646b835dSJunchao Zhang PetscCall(PetscSFLinkSyncStreamBeforeCallMPI(sf, link)); 15166100624SStefano Zampini if (dat->bcast_pattern) { 152337bb527SBarry Smith #if defined(PETSC_HAVE_OMPI_MAJOR_VERSION) /* Workaround: cuda-aware Open MPI 4.1.3 does not support MPI_Ireduce() with device buffers */ 15366100624SStefano Zampini *req = MPI_REQUEST_NULL; /* Set NULL so that we can safely MPI_Wait(req) */ 15466100624SStefano Zampini PetscCallMPI(MPI_Reduce(leafbuf, rootbuf, sf->nleaves, unit, op, dat->bcast_root, comm)); 15566100624SStefano Zampini #else 15666100624SStefano Zampini PetscCallMPI(MPIU_Ireduce(leafbuf, rootbuf, sf->nleaves, unit, op, dat->bcast_root, comm, req)); 15766100624SStefano Zampini #endif 15866100624SStefano Zampini } else { /* Reduce leafdata, then scatter to rootdata */ 15966100624SStefano Zampini PetscCallMPI(MPI_Comm_rank(comm, &rank)); 1609566063dSJacob Faibussowitsch PetscCall(PetscMPIIntCast(dat->rootbuflen[PETSCSF_REMOTE], &recvcount)); 161cd620004SJunchao Zhang /* Allocate a separate leaf buffer on rank 0 */ 162dd400576SPatrick Sanan if (rank == 0 && !link->leafbuf_alloc[PETSCSF_REMOTE][link->leafmtype_mpi]) { 1639566063dSJacob Faibussowitsch PetscCall(PetscSFMalloc(sf, link->leafmtype_mpi, sf->leafbuflen[PETSCSF_REMOTE] * link->unitbytes, (void **)&link->leafbuf_alloc[PETSCSF_REMOTE][link->leafmtype_mpi])); 164dd5b3ca6SJunchao Zhang } 165cd620004SJunchao Zhang /* In case we already copied leafdata from device to host (i.e., no use_gpu_aware_mpi), we need to adjust leafbuf on rank 0 */ 166dd400576SPatrick Sanan if (rank == 0 && link->leafbuf_alloc[PETSCSF_REMOTE][link->leafmtype_mpi] == leafbuf) leafbuf = MPI_IN_PLACE; 1679566063dSJacob Faibussowitsch PetscCall(PetscMPIIntCast(sf->nleaves * link->bs, &count)); 16866100624SStefano Zampini PetscCallMPI(MPI_Reduce(leafbuf, link->leafbuf_alloc[PETSCSF_REMOTE][link->leafmtype_mpi], count, link->basicunit, op, 0, comm)); /* Must do reduce with MPI builtin datatype basicunit */ 1699566063dSJacob Faibussowitsch PetscCallMPI(MPIU_Iscatterv(link->leafbuf_alloc[PETSCSF_REMOTE][link->leafmtype_mpi], dat->recvcounts, dat->displs, unit, rootbuf, recvcount, unit, 0, comm, req)); 170dd5b3ca6SJunchao Zhang } 17166100624SStefano Zampini } 1723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 173eb02082bSJunchao Zhang } 174eb02082bSJunchao Zhang 175d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode PetscSFReduceEnd_Allgatherv(PetscSF sf, MPI_Datatype unit, const void *leafdata, void *rootdata, MPI_Op op) 176d71ae5a4SJacob Faibussowitsch { 1779319200aSJunchao Zhang PetscSFLink link; 1789319200aSJunchao Zhang 1799319200aSJunchao Zhang PetscFunctionBegin; 1809319200aSJunchao Zhang if (op == MPI_REPLACE) { 1819319200aSJunchao Zhang /* A rare case happens when op is MPI_REPLACE, using GPUs but no GPU aware MPI. In PetscSFReduceBegin_Allgather(v), 1829319200aSJunchao Zhang we did a device to device copy and in effect finished the communication. But in PetscSFLinkFinishCommunication() 1839319200aSJunchao Zhang of PetscSFReduceEnd_Basic(), it thinks since there is rootbuf, it calls PetscSFLinkCopyRootBufferInCaseNotUseGpuAwareMPI(). 1846aad120cSJose E. Roman It does a host to device memory copy on rootbuf, wrongly overwriting the results. So we don't overload 1859319200aSJunchao Zhang PetscSFReduceEnd_Basic() in this case, and just reclaim the link. 1869319200aSJunchao Zhang */ 1879566063dSJacob Faibussowitsch PetscCall(PetscSFLinkGetInUse(sf, unit, rootdata, leafdata, PETSC_OWN_POINTER, &link)); 1889566063dSJacob Faibussowitsch PetscCall(PetscSFLinkReclaim(sf, &link)); 1899319200aSJunchao Zhang } else { 1909566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd_Basic(sf, unit, leafdata, rootdata, op)); 1919319200aSJunchao Zhang } 1923ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1939319200aSJunchao Zhang } 1949319200aSJunchao Zhang 195d71ae5a4SJacob Faibussowitsch static PetscErrorCode PetscSFBcastToZero_Allgatherv(PetscSF sf, MPI_Datatype unit, PetscMemType rootmtype, const void *rootdata, PetscMemType leafmtype, void *leafdata) 196d71ae5a4SJacob Faibussowitsch { 197cd620004SJunchao Zhang PetscSFLink link; 198855db38dSJunchao Zhang PetscMPIInt rank; 199f5d27ee7SJunchao Zhang PetscMPIInt sendcount; 200f5d27ee7SJunchao Zhang MPI_Comm comm; 201f5d27ee7SJunchao Zhang PetscSF_Allgatherv *dat = (PetscSF_Allgatherv *)sf->data; 202f5d27ee7SJunchao Zhang void *rootbuf = NULL, *leafbuf = NULL; /* buffer seen by MPI */ 203f5d27ee7SJunchao Zhang MPI_Request *req = NULL; 204eb02082bSJunchao Zhang 205eb02082bSJunchao Zhang PetscFunctionBegin; 206f5d27ee7SJunchao Zhang PetscCall(PetscSFLinkCreate(sf, unit, rootmtype, rootdata, leafmtype, leafdata, MPI_REPLACE, PETSCSF_BCAST, &link)); 207f5d27ee7SJunchao Zhang PetscCall(PetscSFLinkPackRootData(sf, link, PETSCSF_REMOTE, rootdata)); 208f5d27ee7SJunchao Zhang PetscCall(PetscSFLinkCopyRootBufferInCaseNotUseGpuAwareMPI(sf, link, PETSC_TRUE /* device2host before sending */)); 209f5d27ee7SJunchao Zhang PetscCall(PetscObjectGetComm((PetscObject)sf, &comm)); 210f5d27ee7SJunchao Zhang PetscCall(PetscMPIIntCast(sf->nroots, &sendcount)); 211f5d27ee7SJunchao Zhang PetscCall(PetscSFLinkGetMPIBuffersAndRequests(sf, link, PETSCSF_ROOT2LEAF, &rootbuf, &leafbuf, &req, NULL)); 212*646b835dSJunchao Zhang PetscCall(PetscSFLinkSyncStreamBeforeCallMPI(sf, link)); 213f5d27ee7SJunchao Zhang PetscCallMPI(MPIU_Igatherv(rootbuf, sendcount, unit, leafbuf, dat->recvcounts, dat->displs, unit, 0 /*rank 0*/, comm, req)); 214f5d27ee7SJunchao Zhang 2159566063dSJacob Faibussowitsch PetscCall(PetscSFLinkGetInUse(sf, unit, rootdata, leafdata, PETSC_OWN_POINTER, &link)); 2169566063dSJacob Faibussowitsch PetscCall(PetscSFLinkFinishCommunication(sf, link, PETSCSF_ROOT2LEAF)); 2179566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)sf), &rank)); 21848a46eb9SPierre Jolivet if (rank == 0 && PetscMemTypeDevice(leafmtype) && !sf->use_gpu_aware_mpi) PetscCall((*link->Memcpy)(link, PETSC_MEMTYPE_DEVICE, leafdata, PETSC_MEMTYPE_HOST, link->leafbuf[PETSC_MEMTYPE_HOST], sf->leafbuflen[PETSCSF_REMOTE] * link->unitbytes)); 2199566063dSJacob Faibussowitsch PetscCall(PetscSFLinkReclaim(sf, &link)); 2203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 221dd5b3ca6SJunchao Zhang } 222dd5b3ca6SJunchao Zhang 223dd5b3ca6SJunchao Zhang /* This routine is very tricky (I believe it is rarely used with this kind of graph so just provide a simple but not-optimal implementation). 224dd5b3ca6SJunchao Zhang 225dd5b3ca6SJunchao Zhang Suppose we have three ranks. Rank 0 has a root with value 1. Rank 0,1,2 has a leaf with value 2,3,4 respectively. The leaves are connected 226dd5b3ca6SJunchao Zhang to the root on rank 0. Suppose op=MPI_SUM and rank 0,1,2 gets root state in their rank order. By definition of this routine, rank 0 sees 1 227dd5b3ca6SJunchao Zhang in root, fetches it into its leafupate, then updates root to 1 + 2 = 3; rank 1 sees 3 in root, fetches it into its leafupate, then updates 228dd5b3ca6SJunchao Zhang root to 3 + 3 = 6; rank 2 sees 6 in root, fetches it into its leafupdate, then updates root to 6 + 4 = 10. At the end, leafupdate on rank 229dd5b3ca6SJunchao Zhang 0,1,2 is 1,3,6 respectively. root is 10. 230dd5b3ca6SJunchao Zhang 231dd5b3ca6SJunchao Zhang We use a simpler implementation. From the same initial state, we copy leafdata to leafupdate 232dd5b3ca6SJunchao Zhang rank-0 rank-1 rank-2 233dd5b3ca6SJunchao Zhang Root 1 234dd5b3ca6SJunchao Zhang Leaf 2 3 4 235dd5b3ca6SJunchao Zhang Leafupdate 2 3 4 236dd5b3ca6SJunchao Zhang 237dd5b3ca6SJunchao Zhang Do MPI_Exscan on leafupdate, 238dd5b3ca6SJunchao Zhang rank-0 rank-1 rank-2 239dd5b3ca6SJunchao Zhang Root 1 240dd5b3ca6SJunchao Zhang Leaf 2 3 4 241dd5b3ca6SJunchao Zhang Leafupdate 2 2 5 242dd5b3ca6SJunchao Zhang 243dd5b3ca6SJunchao Zhang BcastAndOp from root to leafupdate, 244dd5b3ca6SJunchao Zhang rank-0 rank-1 rank-2 245dd5b3ca6SJunchao Zhang Root 1 246dd5b3ca6SJunchao Zhang Leaf 2 3 4 247dd5b3ca6SJunchao Zhang Leafupdate 3 3 6 248dd5b3ca6SJunchao Zhang 249dd5b3ca6SJunchao Zhang Copy root to leafupdate on rank-0 250dd5b3ca6SJunchao Zhang rank-0 rank-1 rank-2 251dd5b3ca6SJunchao Zhang Root 1 252dd5b3ca6SJunchao Zhang Leaf 2 3 4 253dd5b3ca6SJunchao Zhang Leafupdate 1 3 6 254dd5b3ca6SJunchao Zhang 255dd5b3ca6SJunchao Zhang Reduce from leaf to root, 256dd5b3ca6SJunchao Zhang rank-0 rank-1 rank-2 257dd5b3ca6SJunchao Zhang Root 10 258dd5b3ca6SJunchao Zhang Leaf 2 3 4 259dd5b3ca6SJunchao Zhang Leafupdate 1 3 6 260dd5b3ca6SJunchao Zhang */ 261d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode PetscSFFetchAndOpBegin_Allgatherv(PetscSF sf, MPI_Datatype unit, PetscMemType rootmtype, void *rootdata, PetscMemType leafmtype, const void *leafdata, void *leafupdate, MPI_Op op) 262d71ae5a4SJacob Faibussowitsch { 263cd620004SJunchao Zhang PetscSFLink link; 264dd5b3ca6SJunchao Zhang MPI_Comm comm; 265dd5b3ca6SJunchao Zhang PetscMPIInt count; 266dd5b3ca6SJunchao Zhang 267dd5b3ca6SJunchao Zhang PetscFunctionBegin; 2689566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)sf, &comm)); 26908401ef6SPierre Jolivet PetscCheck(!PetscMemTypeDevice(rootmtype) && !PetscMemTypeDevice(leafmtype), comm, PETSC_ERR_SUP, "Do FetchAndOp on device"); 270dd5b3ca6SJunchao Zhang /* Copy leafdata to leafupdate */ 2719566063dSJacob Faibussowitsch PetscCall(PetscSFLinkCreate(sf, unit, rootmtype, rootdata, leafmtype, leafdata, op, PETSCSF_FETCH, &link)); 2729566063dSJacob Faibussowitsch PetscCall(PetscSFLinkPackLeafData(sf, link, PETSCSF_REMOTE, leafdata)); /* Sync the device */ 2739566063dSJacob Faibussowitsch PetscCall((*link->Memcpy)(link, leafmtype, leafupdate, leafmtype, leafdata, sf->nleaves * link->unitbytes)); 2749566063dSJacob Faibussowitsch PetscCall(PetscSFLinkGetInUse(sf, unit, rootdata, leafdata, PETSC_OWN_POINTER, &link)); 275dd5b3ca6SJunchao Zhang 276dd5b3ca6SJunchao Zhang /* Exscan on leafupdate and then BcastAndOp rootdata to leafupdate */ 27783df288dSJunchao Zhang if (op == MPI_REPLACE) { 278dd5b3ca6SJunchao Zhang PetscMPIInt size, rank, prev, next; 2799566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 2809566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 281dd5b3ca6SJunchao Zhang prev = rank ? rank - 1 : MPI_PROC_NULL; 282dd5b3ca6SJunchao Zhang next = (rank < size - 1) ? rank + 1 : MPI_PROC_NULL; 2839566063dSJacob Faibussowitsch PetscCall(PetscMPIIntCast(sf->nleaves, &count)); 2849566063dSJacob Faibussowitsch PetscCallMPI(MPI_Sendrecv_replace(leafupdate, count, unit, next, link->tag, prev, link->tag, comm, MPI_STATUSES_IGNORE)); 285cd620004SJunchao Zhang } else { 2869566063dSJacob Faibussowitsch PetscCall(PetscMPIIntCast(sf->nleaves * link->bs, &count)); 2879566063dSJacob Faibussowitsch PetscCallMPI(MPI_Exscan(MPI_IN_PLACE, leafupdate, count, link->basicunit, op, comm)); 288cd620004SJunchao Zhang } 2899566063dSJacob Faibussowitsch PetscCall(PetscSFLinkReclaim(sf, &link)); 2909566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, unit, rootdata, leafupdate, op)); 2919566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, unit, rootdata, leafupdate, op)); 292dd5b3ca6SJunchao Zhang 293dd5b3ca6SJunchao Zhang /* Bcast roots to rank 0's leafupdate */ 2949566063dSJacob Faibussowitsch PetscCall(PetscSFBcastToZero_Private(sf, unit, rootdata, leafupdate)); /* Using this line makes Allgather SFs able to inherit this routine */ 295dd5b3ca6SJunchao Zhang 296dd5b3ca6SJunchao Zhang /* Reduce leafdata to rootdata */ 2979566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sf, unit, leafdata, rootdata, op)); 2983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 299dd5b3ca6SJunchao Zhang } 300dd5b3ca6SJunchao Zhang 301d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode PetscSFFetchAndOpEnd_Allgatherv(PetscSF sf, MPI_Datatype unit, void *rootdata, const void *leafdata, void *leafupdate, MPI_Op op) 302d71ae5a4SJacob Faibussowitsch { 303dd5b3ca6SJunchao Zhang PetscFunctionBegin; 3049566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf, unit, leafdata, rootdata, op)); 3053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 306dd5b3ca6SJunchao Zhang } 307dd5b3ca6SJunchao Zhang 308dd5b3ca6SJunchao Zhang /* Get root ranks accessing my leaves */ 309d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode PetscSFGetRootRanks_Allgatherv(PetscSF sf, PetscInt *nranks, const PetscMPIInt **ranks, const PetscInt **roffset, const PetscInt **rmine, const PetscInt **rremote) 310d71ae5a4SJacob Faibussowitsch { 311dd5b3ca6SJunchao Zhang PetscInt i, j, k, size; 312dd5b3ca6SJunchao Zhang const PetscInt *range; 313dd5b3ca6SJunchao Zhang 314dd5b3ca6SJunchao Zhang PetscFunctionBegin; 315dd5b3ca6SJunchao Zhang /* Lazily construct these large arrays if users really need them for this type of SF. Very likely, they do not */ 316dd5b3ca6SJunchao Zhang if (sf->nranks && !sf->ranks) { /* On rank!=0, sf->nranks=0. The sf->nranks test makes this routine also works for sfgatherv */ 317dd5b3ca6SJunchao Zhang size = sf->nranks; 3189566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRanges(sf->map, &range)); 3199566063dSJacob Faibussowitsch PetscCall(PetscMalloc4(size, &sf->ranks, size + 1, &sf->roffset, sf->nleaves, &sf->rmine, sf->nleaves, &sf->rremote)); 320dd5b3ca6SJunchao Zhang for (i = 0; i < size; i++) sf->ranks[i] = i; 3219566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(sf->roffset, range, size + 1)); 322dd5b3ca6SJunchao Zhang for (i = 0; i < sf->nleaves; i++) sf->rmine[i] = i; /*rmine are never NULL even for contiguous leaves */ 323dd5b3ca6SJunchao Zhang for (i = 0; i < size; i++) { 324dd5b3ca6SJunchao Zhang for (j = range[i], k = 0; j < range[i + 1]; j++, k++) sf->rremote[j] = k; 325dd5b3ca6SJunchao Zhang } 326dd5b3ca6SJunchao Zhang } 327dd5b3ca6SJunchao Zhang 328dd5b3ca6SJunchao Zhang if (nranks) *nranks = sf->nranks; 329dd5b3ca6SJunchao Zhang if (ranks) *ranks = sf->ranks; 330dd5b3ca6SJunchao Zhang if (roffset) *roffset = sf->roffset; 331dd5b3ca6SJunchao Zhang if (rmine) *rmine = sf->rmine; 332dd5b3ca6SJunchao Zhang if (rremote) *rremote = sf->rremote; 3333ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 334dd5b3ca6SJunchao Zhang } 335dd5b3ca6SJunchao Zhang 336dd5b3ca6SJunchao Zhang /* Get leaf ranks accessing my roots */ 337d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode PetscSFGetLeafRanks_Allgatherv(PetscSF sf, PetscInt *niranks, const PetscMPIInt **iranks, const PetscInt **ioffset, const PetscInt **irootloc) 338d71ae5a4SJacob Faibussowitsch { 339dd5b3ca6SJunchao Zhang PetscSF_Allgatherv *dat = (PetscSF_Allgatherv *)sf->data; 340dd5b3ca6SJunchao Zhang MPI_Comm comm; 341dd5b3ca6SJunchao Zhang PetscMPIInt size, rank; 342dd5b3ca6SJunchao Zhang PetscInt i, j; 343dd5b3ca6SJunchao Zhang 344dd5b3ca6SJunchao Zhang PetscFunctionBegin; 345dd5b3ca6SJunchao Zhang /* Lazily construct these large arrays if users really need them for this type of SF. Very likely, they do not */ 3469566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)sf, &comm)); 3479566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 3489566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 349dd5b3ca6SJunchao Zhang if (niranks) *niranks = size; 350dd5b3ca6SJunchao Zhang 351dd5b3ca6SJunchao Zhang /* PetscSF_Basic has distinguished incoming ranks. Here we do not need that. But we must put self as the first and 352dd5b3ca6SJunchao Zhang sort other ranks. See comments in PetscSFSetUp_Basic about MatGetBrowsOfAoCols_MPIAIJ on why. 353dd5b3ca6SJunchao Zhang */ 354dd5b3ca6SJunchao Zhang if (iranks) { 355dd5b3ca6SJunchao Zhang if (!dat->iranks) { 3569566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &dat->iranks)); 357dd5b3ca6SJunchao Zhang dat->iranks[0] = rank; 3589371c9d4SSatish Balay for (i = 0, j = 1; i < size; i++) { 3599371c9d4SSatish Balay if (i == rank) continue; 3609371c9d4SSatish Balay dat->iranks[j++] = i; 3619371c9d4SSatish Balay } 362dd5b3ca6SJunchao Zhang } 36366100624SStefano Zampini *iranks = dat->iranks; /* dat->iranks was init'ed to NULL by PetscNew */ 364dd5b3ca6SJunchao Zhang } 365dd5b3ca6SJunchao Zhang 366dd5b3ca6SJunchao Zhang if (ioffset) { 367dd5b3ca6SJunchao Zhang if (!dat->ioffset) { 3689566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size + 1, &dat->ioffset)); 369dd5b3ca6SJunchao Zhang for (i = 0; i <= size; i++) dat->ioffset[i] = i * sf->nroots; 370dd5b3ca6SJunchao Zhang } 371dd5b3ca6SJunchao Zhang *ioffset = dat->ioffset; 372dd5b3ca6SJunchao Zhang } 373dd5b3ca6SJunchao Zhang 374dd5b3ca6SJunchao Zhang if (irootloc) { 375dd5b3ca6SJunchao Zhang if (!dat->irootloc) { 3769566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(sf->nleaves, &dat->irootloc)); 377dd5b3ca6SJunchao Zhang for (i = 0; i < size; i++) { 378dd5b3ca6SJunchao Zhang for (j = 0; j < sf->nroots; j++) dat->irootloc[i * sf->nroots + j] = j; 379dd5b3ca6SJunchao Zhang } 380dd5b3ca6SJunchao Zhang } 381dd5b3ca6SJunchao Zhang *irootloc = dat->irootloc; 382dd5b3ca6SJunchao Zhang } 3833ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 384dd5b3ca6SJunchao Zhang } 385dd5b3ca6SJunchao Zhang 386d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode PetscSFCreateLocalSF_Allgatherv(PetscSF sf, PetscSF *out) 387d71ae5a4SJacob Faibussowitsch { 388dd5b3ca6SJunchao Zhang PetscInt i, nroots, nleaves, rstart, *ilocal; 389dd5b3ca6SJunchao Zhang PetscSFNode *iremote; 390dd5b3ca6SJunchao Zhang PetscSF lsf; 391dd5b3ca6SJunchao Zhang 392dd5b3ca6SJunchao Zhang PetscFunctionBegin; 393eb02082bSJunchao Zhang nleaves = sf->nleaves ? sf->nroots : 0; /* sf->nleaves can be zero with SFGather(v) */ 394eb02082bSJunchao Zhang nroots = nleaves; 3959566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nleaves, &ilocal)); 3969566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nleaves, &iremote)); 3979566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(sf->map, &rstart, NULL)); 398dd5b3ca6SJunchao Zhang 399dd5b3ca6SJunchao Zhang for (i = 0; i < nleaves; i++) { 400dd5b3ca6SJunchao Zhang ilocal[i] = rstart + i; /* lsf does not change leave indices */ 401dd5b3ca6SJunchao Zhang iremote[i].rank = 0; /* rank in PETSC_COMM_SELF */ 402dd5b3ca6SJunchao Zhang iremote[i].index = i; /* root index */ 403dd5b3ca6SJunchao Zhang } 404dd5b3ca6SJunchao Zhang 4059566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PETSC_COMM_SELF, &lsf)); 4069566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(lsf, nroots, nleaves, ilocal, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 4079566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(lsf)); 408dd5b3ca6SJunchao Zhang *out = lsf; 4093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 410dd5b3ca6SJunchao Zhang } 411dd5b3ca6SJunchao Zhang 412d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode PetscSFCreate_Allgatherv(PetscSF sf) 413d71ae5a4SJacob Faibussowitsch { 414dd5b3ca6SJunchao Zhang PetscSF_Allgatherv *dat = (PetscSF_Allgatherv *)sf->data; 415dd5b3ca6SJunchao Zhang 416dd5b3ca6SJunchao Zhang PetscFunctionBegin; 417ad227feaSJunchao Zhang sf->ops->BcastEnd = PetscSFBcastEnd_Basic; 4189319200aSJunchao Zhang sf->ops->ReduceEnd = PetscSFReduceEnd_Allgatherv; 419cd620004SJunchao Zhang 420dd5b3ca6SJunchao Zhang sf->ops->SetUp = PetscSFSetUp_Allgatherv; 421dd5b3ca6SJunchao Zhang sf->ops->Reset = PetscSFReset_Allgatherv; 422dd5b3ca6SJunchao Zhang sf->ops->Destroy = PetscSFDestroy_Allgatherv; 423dd5b3ca6SJunchao Zhang sf->ops->GetRootRanks = PetscSFGetRootRanks_Allgatherv; 424dd5b3ca6SJunchao Zhang sf->ops->GetLeafRanks = PetscSFGetLeafRanks_Allgatherv; 425dd5b3ca6SJunchao Zhang sf->ops->GetGraph = PetscSFGetGraph_Allgatherv; 426ad227feaSJunchao Zhang sf->ops->BcastBegin = PetscSFBcastBegin_Allgatherv; 427dd5b3ca6SJunchao Zhang sf->ops->ReduceBegin = PetscSFReduceBegin_Allgatherv; 428dd5b3ca6SJunchao Zhang sf->ops->FetchAndOpBegin = PetscSFFetchAndOpBegin_Allgatherv; 429dd5b3ca6SJunchao Zhang sf->ops->FetchAndOpEnd = PetscSFFetchAndOpEnd_Allgatherv; 430dd5b3ca6SJunchao Zhang sf->ops->CreateLocalSF = PetscSFCreateLocalSF_Allgatherv; 431dd5b3ca6SJunchao Zhang sf->ops->BcastToZero = PetscSFBcastToZero_Allgatherv; 432dd5b3ca6SJunchao Zhang 4336677b1c1SJunchao Zhang sf->collective = PETSC_TRUE; 4346677b1c1SJunchao Zhang 4354dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&dat)); 43666100624SStefano Zampini dat->bcast_root = -1; 437dd5b3ca6SJunchao Zhang sf->data = (void *)dat; 4383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 439dd5b3ca6SJunchao Zhang } 440