1dd5b3ca6SJunchao Zhang #include <../src/vec/is/sf/impls/basic/allgatherv/sfallgatherv.h> 2dd5b3ca6SJunchao Zhang 3ad227feaSJunchao Zhang PETSC_INTERN PetscErrorCode PetscSFBcastBegin_Gatherv(PetscSF, MPI_Datatype, PetscMemType, const void *, PetscMemType, void *, MPI_Op); 4dd5b3ca6SJunchao Zhang 5dd5b3ca6SJunchao Zhang /* PetscSFGetGraph is non-collective. An implementation should not have collective calls */ 6d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode PetscSFGetGraph_Allgatherv(PetscSF sf, PetscInt *nroots, PetscInt *nleaves, const PetscInt **ilocal, const PetscSFNode **iremote) 7d71ae5a4SJacob Faibussowitsch { 8dd5b3ca6SJunchao Zhang PetscInt i, j, k; 9dd5b3ca6SJunchao Zhang const PetscInt *range; 10dd5b3ca6SJunchao Zhang PetscMPIInt size; 11dd5b3ca6SJunchao Zhang 12dd5b3ca6SJunchao Zhang PetscFunctionBegin; 139566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)sf), &size)); 14dd5b3ca6SJunchao Zhang if (nroots) *nroots = sf->nroots; 15dd5b3ca6SJunchao Zhang if (nleaves) *nleaves = sf->nleaves; 16dd5b3ca6SJunchao Zhang if (ilocal) *ilocal = NULL; /* Contiguous leaves */ 17dd5b3ca6SJunchao Zhang if (iremote) { 18dd5b3ca6SJunchao Zhang if (!sf->remote && sf->nleaves) { /* The && sf->nleaves makes sfgatherv able to inherit this routine */ 199566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRanges(sf->map, &range)); 209566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(sf->nleaves, &sf->remote)); 21dd5b3ca6SJunchao Zhang sf->remote_alloc = sf->remote; 22dd5b3ca6SJunchao Zhang for (i = 0; i < size; i++) { 23dd5b3ca6SJunchao Zhang for (j = range[i], k = 0; j < range[i + 1]; j++, k++) { 24dd5b3ca6SJunchao Zhang sf->remote[j].rank = i; 25dd5b3ca6SJunchao Zhang sf->remote[j].index = k; 26dd5b3ca6SJunchao Zhang } 27dd5b3ca6SJunchao Zhang } 28dd5b3ca6SJunchao Zhang } 29dd5b3ca6SJunchao Zhang *iremote = sf->remote; 30dd5b3ca6SJunchao Zhang } 31dd5b3ca6SJunchao Zhang PetscFunctionReturn(0); 32dd5b3ca6SJunchao Zhang } 33dd5b3ca6SJunchao Zhang 34d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode PetscSFSetUp_Allgatherv(PetscSF sf) 35d71ae5a4SJacob Faibussowitsch { 36dd5b3ca6SJunchao Zhang PetscSF_Allgatherv *dat = (PetscSF_Allgatherv *)sf->data; 37dd5b3ca6SJunchao Zhang PetscMPIInt size; 38dd5b3ca6SJunchao Zhang PetscInt i; 39dd5b3ca6SJunchao Zhang const PetscInt *range; 40*66100624SStefano Zampini MPI_Comm comm; 41dd5b3ca6SJunchao Zhang 42dd5b3ca6SJunchao Zhang PetscFunctionBegin; 439566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp_Allgather(sf)); 44*66100624SStefano Zampini PetscCall(PetscObjectGetComm((PetscObject)sf, &comm)); 45*66100624SStefano Zampini PetscCallMPI(MPI_Comm_size(comm, &size)); 46dd5b3ca6SJunchao Zhang if (sf->nleaves) { /* This if (sf->nleaves) test makes sfgatherv able to inherit this routine */ 47*66100624SStefano Zampini PetscBool isallgatherv = PETSC_FALSE; 48*66100624SStefano Zampini 499566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &dat->recvcounts)); 509566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &dat->displs)); 519566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRanges(sf->map, &range)); 52dd5b3ca6SJunchao Zhang 53dd5b3ca6SJunchao Zhang for (i = 0; i < size; i++) { 549566063dSJacob Faibussowitsch PetscCall(PetscMPIIntCast(range[i], &dat->displs[i])); 559566063dSJacob Faibussowitsch PetscCall(PetscMPIIntCast(range[i + 1] - range[i], &dat->recvcounts[i])); 56dd5b3ca6SJunchao Zhang } 57*66100624SStefano Zampini 58*66100624SStefano Zampini /* check if we actually have a one-to-all pattern */ 59*66100624SStefano Zampini PetscCall(PetscObjectTypeCompare((PetscObject)sf, PETSCSFALLGATHERV, &isallgatherv)); 60*66100624SStefano Zampini if (isallgatherv) { 61*66100624SStefano Zampini PetscMPIInt rank, nRanksWithZeroRoots; 62*66100624SStefano Zampini 63*66100624SStefano Zampini nRanksWithZeroRoots = (sf->nroots == 0) ? 1 : 0; /* I have no roots */ 64*66100624SStefano Zampini PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &nRanksWithZeroRoots, 1, MPI_INT, MPI_SUM, comm)); 65*66100624SStefano Zampini if (nRanksWithZeroRoots == size - 1) { /* Only one rank has roots, which indicates a bcast pattern */ 66*66100624SStefano Zampini dat->bcast_pattern = PETSC_TRUE; 67*66100624SStefano Zampini PetscCallMPI(MPI_Comm_rank(comm, &rank)); 68*66100624SStefano Zampini dat->bcast_root = sf->nroots > 0 ? rank : -1; 69*66100624SStefano Zampini PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, &dat->bcast_root, 1, MPI_INT, MPI_MAX, comm)); 70*66100624SStefano Zampini } 71*66100624SStefano Zampini } 72dd5b3ca6SJunchao Zhang } 73dd5b3ca6SJunchao Zhang PetscFunctionReturn(0); 74dd5b3ca6SJunchao Zhang } 75dd5b3ca6SJunchao Zhang 76d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode PetscSFReset_Allgatherv(PetscSF sf) 77d71ae5a4SJacob Faibussowitsch { 78eb02082bSJunchao Zhang PetscSF_Allgatherv *dat = (PetscSF_Allgatherv *)sf->data; 7971438e86SJunchao Zhang PetscSFLink link = dat->avail, next; 80dd5b3ca6SJunchao Zhang 81dd5b3ca6SJunchao Zhang PetscFunctionBegin; 829566063dSJacob Faibussowitsch PetscCall(PetscFree(dat->iranks)); 839566063dSJacob Faibussowitsch PetscCall(PetscFree(dat->ioffset)); 849566063dSJacob Faibussowitsch PetscCall(PetscFree(dat->irootloc)); 859566063dSJacob Faibussowitsch PetscCall(PetscFree(dat->recvcounts)); 869566063dSJacob Faibussowitsch PetscCall(PetscFree(dat->displs)); 8728b400f6SJacob Faibussowitsch PetscCheck(!dat->inuse, PetscObjectComm((PetscObject)sf), PETSC_ERR_ARG_WRONGSTATE, "Outstanding operation has not been completed"); 889371c9d4SSatish Balay for (; link; link = next) { 899371c9d4SSatish Balay next = link->next; 909371c9d4SSatish Balay PetscCall(PetscSFLinkDestroy(sf, link)); 919371c9d4SSatish Balay } 9271438e86SJunchao Zhang dat->avail = NULL; 93dd5b3ca6SJunchao Zhang PetscFunctionReturn(0); 94dd5b3ca6SJunchao Zhang } 95dd5b3ca6SJunchao Zhang 96d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode PetscSFDestroy_Allgatherv(PetscSF sf) 97d71ae5a4SJacob Faibussowitsch { 98dd5b3ca6SJunchao Zhang PetscFunctionBegin; 999566063dSJacob Faibussowitsch PetscCall(PetscSFReset_Allgatherv(sf)); 1009566063dSJacob Faibussowitsch PetscCall(PetscFree(sf->data)); 101dd5b3ca6SJunchao Zhang PetscFunctionReturn(0); 102dd5b3ca6SJunchao Zhang } 103dd5b3ca6SJunchao Zhang 104d71ae5a4SJacob Faibussowitsch static PetscErrorCode PetscSFBcastBegin_Allgatherv(PetscSF sf, MPI_Datatype unit, PetscMemType rootmtype, const void *rootdata, PetscMemType leafmtype, void *leafdata, MPI_Op op) 105d71ae5a4SJacob Faibussowitsch { 106cd620004SJunchao Zhang PetscSFLink link; 107*66100624SStefano Zampini PetscMPIInt sendcount, rank; 108dd5b3ca6SJunchao Zhang MPI_Comm comm; 109cd620004SJunchao Zhang void *rootbuf = NULL, *leafbuf = NULL; 110cd620004SJunchao Zhang MPI_Request *req; 111dd5b3ca6SJunchao Zhang PetscSF_Allgatherv *dat = (PetscSF_Allgatherv *)sf->data; 112dd5b3ca6SJunchao Zhang 113dd5b3ca6SJunchao Zhang PetscFunctionBegin; 1149566063dSJacob Faibussowitsch PetscCall(PetscSFLinkCreate(sf, unit, rootmtype, rootdata, leafmtype, leafdata, op, PETSCSF_BCAST, &link)); 1159566063dSJacob Faibussowitsch PetscCall(PetscSFLinkPackRootData(sf, link, PETSCSF_REMOTE, rootdata)); 1169566063dSJacob Faibussowitsch PetscCall(PetscSFLinkCopyRootBufferInCaseNotUseGpuAwareMPI(sf, link, PETSC_TRUE /* device2host before sending */)); 1179566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)sf, &comm)); 118*66100624SStefano Zampini PetscCallMPI(MPI_Comm_rank(comm, &rank)); 1199566063dSJacob Faibussowitsch PetscCall(PetscMPIIntCast(sf->nroots, &sendcount)); 1209566063dSJacob Faibussowitsch PetscCall(PetscSFLinkGetMPIBuffersAndRequests(sf, link, PETSCSF_ROOT2LEAF, &rootbuf, &leafbuf, &req, NULL)); 121*66100624SStefano Zampini 122*66100624SStefano Zampini if (dat->bcast_pattern && rank == dat->bcast_root) PetscCall((*link->Memcpy)(link, link->leafmtype_mpi, leafbuf, link->rootmtype_mpi, rootbuf, (size_t)sendcount * link->unitbytes)); 123*66100624SStefano Zampini /* Ready the buffers for MPI */ 1249566063dSJacob Faibussowitsch PetscCall(PetscSFLinkSyncStreamBeforeCallMPI(sf, link, PETSCSF_ROOT2LEAF)); 125*66100624SStefano Zampini if (dat->bcast_pattern) PetscCallMPI(MPIU_Ibcast(leafbuf, sf->nleaves, unit, dat->bcast_root, comm, req)); 126*66100624SStefano Zampini else PetscCallMPI(MPIU_Iallgatherv(rootbuf, sendcount, unit, leafbuf, dat->recvcounts, dat->displs, unit, comm, req)); 127855db38dSJunchao Zhang PetscFunctionReturn(0); 128855db38dSJunchao Zhang } 129855db38dSJunchao Zhang 130d71ae5a4SJacob Faibussowitsch static PetscErrorCode PetscSFReduceBegin_Allgatherv(PetscSF sf, MPI_Datatype unit, PetscMemType leafmtype, const void *leafdata, PetscMemType rootmtype, void *rootdata, MPI_Op op) 131d71ae5a4SJacob Faibussowitsch { 132cd620004SJunchao Zhang PetscSFLink link; 133dd5b3ca6SJunchao Zhang PetscSF_Allgatherv *dat = (PetscSF_Allgatherv *)sf->data; 134dd5b3ca6SJunchao Zhang PetscInt rstart; 135cd620004SJunchao Zhang PetscMPIInt rank, count, recvcount; 136dd5b3ca6SJunchao Zhang MPI_Comm comm; 137cd620004SJunchao Zhang void *rootbuf = NULL, *leafbuf = NULL; 138cd620004SJunchao Zhang MPI_Request *req; 139dd5b3ca6SJunchao Zhang 140dd5b3ca6SJunchao Zhang PetscFunctionBegin; 1419566063dSJacob Faibussowitsch PetscCall(PetscSFLinkCreate(sf, unit, rootmtype, rootdata, leafmtype, leafdata, op, PETSCSF_REDUCE, &link)); 14283df288dSJunchao Zhang if (op == MPI_REPLACE) { 143cd620004SJunchao Zhang /* REPLACE is only meaningful when all processes have the same leafdata to reduce. Therefore copying from local leafdata is fine */ 1449566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(sf->map, &rstart, NULL)); 1459566063dSJacob Faibussowitsch PetscCall((*link->Memcpy)(link, rootmtype, rootdata, leafmtype, (const char *)leafdata + (size_t)rstart * link->unitbytes, (size_t)sf->nroots * link->unitbytes)); 1469566063dSJacob Faibussowitsch if (PetscMemTypeDevice(leafmtype) && PetscMemTypeHost(rootmtype)) PetscCall((*link->SyncStream)(link)); 147dd5b3ca6SJunchao Zhang } else { 1489566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)sf, &comm)); 1499566063dSJacob Faibussowitsch PetscCall(PetscSFLinkPackLeafData(sf, link, PETSCSF_REMOTE, leafdata)); 1509566063dSJacob Faibussowitsch PetscCall(PetscSFLinkCopyLeafBufferInCaseNotUseGpuAwareMPI(sf, link, PETSC_TRUE /* device2host before sending */)); 1519566063dSJacob Faibussowitsch PetscCall(PetscSFLinkGetMPIBuffersAndRequests(sf, link, PETSCSF_LEAF2ROOT, &rootbuf, &leafbuf, &req, NULL)); 152*66100624SStefano Zampini PetscCall(PetscSFLinkSyncStreamBeforeCallMPI(sf, link, PETSCSF_LEAF2ROOT)); 153*66100624SStefano Zampini if (dat->bcast_pattern) { 154*66100624SStefano Zampini #if defined(PETSC_HAVE_OMPI_MAJOR_VERSION) /* Workaround: cuda-aware OpenMPI-4.1.3 does not support MPI_Ireduce() with device buffers */ 155*66100624SStefano Zampini *req = MPI_REQUEST_NULL; /* Set NULL so that we can safely MPI_Wait(req) */ 156*66100624SStefano Zampini PetscCallMPI(MPI_Reduce(leafbuf, rootbuf, sf->nleaves, unit, op, dat->bcast_root, comm)); 157*66100624SStefano Zampini #else 158*66100624SStefano Zampini PetscCallMPI(MPIU_Ireduce(leafbuf, rootbuf, sf->nleaves, unit, op, dat->bcast_root, comm, req)); 159*66100624SStefano Zampini #endif 160*66100624SStefano Zampini } else { /* Reduce leafdata, then scatter to rootdata */ 161*66100624SStefano Zampini PetscCallMPI(MPI_Comm_rank(comm, &rank)); 1629566063dSJacob Faibussowitsch PetscCall(PetscMPIIntCast(dat->rootbuflen[PETSCSF_REMOTE], &recvcount)); 163cd620004SJunchao Zhang /* Allocate a separate leaf buffer on rank 0 */ 164dd400576SPatrick Sanan if (rank == 0 && !link->leafbuf_alloc[PETSCSF_REMOTE][link->leafmtype_mpi]) { 1659566063dSJacob Faibussowitsch PetscCall(PetscSFMalloc(sf, link->leafmtype_mpi, sf->leafbuflen[PETSCSF_REMOTE] * link->unitbytes, (void **)&link->leafbuf_alloc[PETSCSF_REMOTE][link->leafmtype_mpi])); 166dd5b3ca6SJunchao Zhang } 167cd620004SJunchao Zhang /* In case we already copied leafdata from device to host (i.e., no use_gpu_aware_mpi), we need to adjust leafbuf on rank 0 */ 168dd400576SPatrick Sanan if (rank == 0 && link->leafbuf_alloc[PETSCSF_REMOTE][link->leafmtype_mpi] == leafbuf) leafbuf = MPI_IN_PLACE; 1699566063dSJacob Faibussowitsch PetscCall(PetscMPIIntCast(sf->nleaves * link->bs, &count)); 170*66100624SStefano Zampini PetscCallMPI(MPI_Reduce(leafbuf, link->leafbuf_alloc[PETSCSF_REMOTE][link->leafmtype_mpi], count, link->basicunit, op, 0, comm)); /* Must do reduce with MPI builtin datatype basicunit */ 1719566063dSJacob Faibussowitsch PetscCallMPI(MPIU_Iscatterv(link->leafbuf_alloc[PETSCSF_REMOTE][link->leafmtype_mpi], dat->recvcounts, dat->displs, unit, rootbuf, recvcount, unit, 0, comm, req)); 172dd5b3ca6SJunchao Zhang } 173*66100624SStefano Zampini } 174eb02082bSJunchao Zhang PetscFunctionReturn(0); 175eb02082bSJunchao Zhang } 176eb02082bSJunchao Zhang 177d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode PetscSFReduceEnd_Allgatherv(PetscSF sf, MPI_Datatype unit, const void *leafdata, void *rootdata, MPI_Op op) 178d71ae5a4SJacob Faibussowitsch { 1799319200aSJunchao Zhang PetscSFLink link; 1809319200aSJunchao Zhang 1819319200aSJunchao Zhang PetscFunctionBegin; 1829319200aSJunchao Zhang if (op == MPI_REPLACE) { 1839319200aSJunchao Zhang /* A rare case happens when op is MPI_REPLACE, using GPUs but no GPU aware MPI. In PetscSFReduceBegin_Allgather(v), 1849319200aSJunchao Zhang we did a device to device copy and in effect finished the communication. But in PetscSFLinkFinishCommunication() 1859319200aSJunchao Zhang of PetscSFReduceEnd_Basic(), it thinks since there is rootbuf, it calls PetscSFLinkCopyRootBufferInCaseNotUseGpuAwareMPI(). 1866aad120cSJose E. Roman It does a host to device memory copy on rootbuf, wrongly overwriting the results. So we don't overload 1879319200aSJunchao Zhang PetscSFReduceEnd_Basic() in this case, and just reclaim the link. 1889319200aSJunchao Zhang */ 1899566063dSJacob Faibussowitsch PetscCall(PetscSFLinkGetInUse(sf, unit, rootdata, leafdata, PETSC_OWN_POINTER, &link)); 1909566063dSJacob Faibussowitsch PetscCall(PetscSFLinkReclaim(sf, &link)); 1919319200aSJunchao Zhang } else { 1929566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd_Basic(sf, unit, leafdata, rootdata, op)); 1939319200aSJunchao Zhang } 1949319200aSJunchao Zhang PetscFunctionReturn(0); 1959319200aSJunchao Zhang } 1969319200aSJunchao Zhang 197d71ae5a4SJacob Faibussowitsch static PetscErrorCode PetscSFBcastToZero_Allgatherv(PetscSF sf, MPI_Datatype unit, PetscMemType rootmtype, const void *rootdata, PetscMemType leafmtype, void *leafdata) 198d71ae5a4SJacob Faibussowitsch { 199cd620004SJunchao Zhang PetscSFLink link; 200855db38dSJunchao Zhang PetscMPIInt rank; 201eb02082bSJunchao Zhang 202eb02082bSJunchao Zhang PetscFunctionBegin; 2039566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin_Gatherv(sf, unit, rootmtype, rootdata, leafmtype, leafdata, MPI_REPLACE)); 2049566063dSJacob Faibussowitsch PetscCall(PetscSFLinkGetInUse(sf, unit, rootdata, leafdata, PETSC_OWN_POINTER, &link)); 2059566063dSJacob Faibussowitsch PetscCall(PetscSFLinkFinishCommunication(sf, link, PETSCSF_ROOT2LEAF)); 2069566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)sf), &rank)); 20748a46eb9SPierre Jolivet if (rank == 0 && PetscMemTypeDevice(leafmtype) && !sf->use_gpu_aware_mpi) PetscCall((*link->Memcpy)(link, PETSC_MEMTYPE_DEVICE, leafdata, PETSC_MEMTYPE_HOST, link->leafbuf[PETSC_MEMTYPE_HOST], sf->leafbuflen[PETSCSF_REMOTE] * link->unitbytes)); 2089566063dSJacob Faibussowitsch PetscCall(PetscSFLinkReclaim(sf, &link)); 209dd5b3ca6SJunchao Zhang PetscFunctionReturn(0); 210dd5b3ca6SJunchao Zhang } 211dd5b3ca6SJunchao Zhang 212dd5b3ca6SJunchao Zhang /* This routine is very tricky (I believe it is rarely used with this kind of graph so just provide a simple but not-optimal implementation). 213dd5b3ca6SJunchao Zhang 214dd5b3ca6SJunchao Zhang Suppose we have three ranks. Rank 0 has a root with value 1. Rank 0,1,2 has a leaf with value 2,3,4 respectively. The leaves are connected 215dd5b3ca6SJunchao Zhang to the root on rank 0. Suppose op=MPI_SUM and rank 0,1,2 gets root state in their rank order. By definition of this routine, rank 0 sees 1 216dd5b3ca6SJunchao Zhang in root, fetches it into its leafupate, then updates root to 1 + 2 = 3; rank 1 sees 3 in root, fetches it into its leafupate, then updates 217dd5b3ca6SJunchao Zhang root to 3 + 3 = 6; rank 2 sees 6 in root, fetches it into its leafupdate, then updates root to 6 + 4 = 10. At the end, leafupdate on rank 218dd5b3ca6SJunchao Zhang 0,1,2 is 1,3,6 respectively. root is 10. 219dd5b3ca6SJunchao Zhang 220dd5b3ca6SJunchao Zhang We use a simpler implementation. From the same initial state, we copy leafdata to leafupdate 221dd5b3ca6SJunchao Zhang rank-0 rank-1 rank-2 222dd5b3ca6SJunchao Zhang Root 1 223dd5b3ca6SJunchao Zhang Leaf 2 3 4 224dd5b3ca6SJunchao Zhang Leafupdate 2 3 4 225dd5b3ca6SJunchao Zhang 226dd5b3ca6SJunchao Zhang Do MPI_Exscan on leafupdate, 227dd5b3ca6SJunchao Zhang rank-0 rank-1 rank-2 228dd5b3ca6SJunchao Zhang Root 1 229dd5b3ca6SJunchao Zhang Leaf 2 3 4 230dd5b3ca6SJunchao Zhang Leafupdate 2 2 5 231dd5b3ca6SJunchao Zhang 232dd5b3ca6SJunchao Zhang BcastAndOp from root to leafupdate, 233dd5b3ca6SJunchao Zhang rank-0 rank-1 rank-2 234dd5b3ca6SJunchao Zhang Root 1 235dd5b3ca6SJunchao Zhang Leaf 2 3 4 236dd5b3ca6SJunchao Zhang Leafupdate 3 3 6 237dd5b3ca6SJunchao Zhang 238dd5b3ca6SJunchao Zhang Copy root to leafupdate on rank-0 239dd5b3ca6SJunchao Zhang rank-0 rank-1 rank-2 240dd5b3ca6SJunchao Zhang Root 1 241dd5b3ca6SJunchao Zhang Leaf 2 3 4 242dd5b3ca6SJunchao Zhang Leafupdate 1 3 6 243dd5b3ca6SJunchao Zhang 244dd5b3ca6SJunchao Zhang Reduce from leaf to root, 245dd5b3ca6SJunchao Zhang rank-0 rank-1 rank-2 246dd5b3ca6SJunchao Zhang Root 10 247dd5b3ca6SJunchao Zhang Leaf 2 3 4 248dd5b3ca6SJunchao Zhang Leafupdate 1 3 6 249dd5b3ca6SJunchao Zhang */ 250d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode PetscSFFetchAndOpBegin_Allgatherv(PetscSF sf, MPI_Datatype unit, PetscMemType rootmtype, void *rootdata, PetscMemType leafmtype, const void *leafdata, void *leafupdate, MPI_Op op) 251d71ae5a4SJacob Faibussowitsch { 252cd620004SJunchao Zhang PetscSFLink link; 253dd5b3ca6SJunchao Zhang MPI_Comm comm; 254dd5b3ca6SJunchao Zhang PetscMPIInt count; 255dd5b3ca6SJunchao Zhang 256dd5b3ca6SJunchao Zhang PetscFunctionBegin; 2579566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)sf, &comm)); 25808401ef6SPierre Jolivet PetscCheck(!PetscMemTypeDevice(rootmtype) && !PetscMemTypeDevice(leafmtype), comm, PETSC_ERR_SUP, "Do FetchAndOp on device"); 259dd5b3ca6SJunchao Zhang /* Copy leafdata to leafupdate */ 2609566063dSJacob Faibussowitsch PetscCall(PetscSFLinkCreate(sf, unit, rootmtype, rootdata, leafmtype, leafdata, op, PETSCSF_FETCH, &link)); 2619566063dSJacob Faibussowitsch PetscCall(PetscSFLinkPackLeafData(sf, link, PETSCSF_REMOTE, leafdata)); /* Sync the device */ 2629566063dSJacob Faibussowitsch PetscCall((*link->Memcpy)(link, leafmtype, leafupdate, leafmtype, leafdata, sf->nleaves * link->unitbytes)); 2639566063dSJacob Faibussowitsch PetscCall(PetscSFLinkGetInUse(sf, unit, rootdata, leafdata, PETSC_OWN_POINTER, &link)); 264dd5b3ca6SJunchao Zhang 265dd5b3ca6SJunchao Zhang /* Exscan on leafupdate and then BcastAndOp rootdata to leafupdate */ 26683df288dSJunchao Zhang if (op == MPI_REPLACE) { 267dd5b3ca6SJunchao Zhang PetscMPIInt size, rank, prev, next; 2689566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 2699566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 270dd5b3ca6SJunchao Zhang prev = rank ? rank - 1 : MPI_PROC_NULL; 271dd5b3ca6SJunchao Zhang next = (rank < size - 1) ? rank + 1 : MPI_PROC_NULL; 2729566063dSJacob Faibussowitsch PetscCall(PetscMPIIntCast(sf->nleaves, &count)); 2739566063dSJacob Faibussowitsch PetscCallMPI(MPI_Sendrecv_replace(leafupdate, count, unit, next, link->tag, prev, link->tag, comm, MPI_STATUSES_IGNORE)); 274cd620004SJunchao Zhang } else { 2759566063dSJacob Faibussowitsch PetscCall(PetscMPIIntCast(sf->nleaves * link->bs, &count)); 2769566063dSJacob Faibussowitsch PetscCallMPI(MPI_Exscan(MPI_IN_PLACE, leafupdate, count, link->basicunit, op, comm)); 277cd620004SJunchao Zhang } 2789566063dSJacob Faibussowitsch PetscCall(PetscSFLinkReclaim(sf, &link)); 2799566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, unit, rootdata, leafupdate, op)); 2809566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, unit, rootdata, leafupdate, op)); 281dd5b3ca6SJunchao Zhang 282dd5b3ca6SJunchao Zhang /* Bcast roots to rank 0's leafupdate */ 2839566063dSJacob Faibussowitsch PetscCall(PetscSFBcastToZero_Private(sf, unit, rootdata, leafupdate)); /* Using this line makes Allgather SFs able to inherit this routine */ 284dd5b3ca6SJunchao Zhang 285dd5b3ca6SJunchao Zhang /* Reduce leafdata to rootdata */ 2869566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sf, unit, leafdata, rootdata, op)); 287dd5b3ca6SJunchao Zhang PetscFunctionReturn(0); 288dd5b3ca6SJunchao Zhang } 289dd5b3ca6SJunchao Zhang 290d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode PetscSFFetchAndOpEnd_Allgatherv(PetscSF sf, MPI_Datatype unit, void *rootdata, const void *leafdata, void *leafupdate, MPI_Op op) 291d71ae5a4SJacob Faibussowitsch { 292dd5b3ca6SJunchao Zhang PetscFunctionBegin; 2939566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf, unit, leafdata, rootdata, op)); 294dd5b3ca6SJunchao Zhang PetscFunctionReturn(0); 295dd5b3ca6SJunchao Zhang } 296dd5b3ca6SJunchao Zhang 297dd5b3ca6SJunchao Zhang /* Get root ranks accessing my leaves */ 298d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode PetscSFGetRootRanks_Allgatherv(PetscSF sf, PetscInt *nranks, const PetscMPIInt **ranks, const PetscInt **roffset, const PetscInt **rmine, const PetscInt **rremote) 299d71ae5a4SJacob Faibussowitsch { 300dd5b3ca6SJunchao Zhang PetscInt i, j, k, size; 301dd5b3ca6SJunchao Zhang const PetscInt *range; 302dd5b3ca6SJunchao Zhang 303dd5b3ca6SJunchao Zhang PetscFunctionBegin; 304dd5b3ca6SJunchao Zhang /* Lazily construct these large arrays if users really need them for this type of SF. Very likely, they do not */ 305dd5b3ca6SJunchao Zhang if (sf->nranks && !sf->ranks) { /* On rank!=0, sf->nranks=0. The sf->nranks test makes this routine also works for sfgatherv */ 306dd5b3ca6SJunchao Zhang size = sf->nranks; 3079566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRanges(sf->map, &range)); 3089566063dSJacob Faibussowitsch PetscCall(PetscMalloc4(size, &sf->ranks, size + 1, &sf->roffset, sf->nleaves, &sf->rmine, sf->nleaves, &sf->rremote)); 309dd5b3ca6SJunchao Zhang for (i = 0; i < size; i++) sf->ranks[i] = i; 3109566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(sf->roffset, range, size + 1)); 311dd5b3ca6SJunchao Zhang for (i = 0; i < sf->nleaves; i++) sf->rmine[i] = i; /*rmine are never NULL even for contiguous leaves */ 312dd5b3ca6SJunchao Zhang for (i = 0; i < size; i++) { 313dd5b3ca6SJunchao Zhang for (j = range[i], k = 0; j < range[i + 1]; j++, k++) sf->rremote[j] = k; 314dd5b3ca6SJunchao Zhang } 315dd5b3ca6SJunchao Zhang } 316dd5b3ca6SJunchao Zhang 317dd5b3ca6SJunchao Zhang if (nranks) *nranks = sf->nranks; 318dd5b3ca6SJunchao Zhang if (ranks) *ranks = sf->ranks; 319dd5b3ca6SJunchao Zhang if (roffset) *roffset = sf->roffset; 320dd5b3ca6SJunchao Zhang if (rmine) *rmine = sf->rmine; 321dd5b3ca6SJunchao Zhang if (rremote) *rremote = sf->rremote; 322dd5b3ca6SJunchao Zhang PetscFunctionReturn(0); 323dd5b3ca6SJunchao Zhang } 324dd5b3ca6SJunchao Zhang 325dd5b3ca6SJunchao Zhang /* Get leaf ranks accessing my roots */ 326d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode PetscSFGetLeafRanks_Allgatherv(PetscSF sf, PetscInt *niranks, const PetscMPIInt **iranks, const PetscInt **ioffset, const PetscInt **irootloc) 327d71ae5a4SJacob Faibussowitsch { 328dd5b3ca6SJunchao Zhang PetscSF_Allgatherv *dat = (PetscSF_Allgatherv *)sf->data; 329dd5b3ca6SJunchao Zhang MPI_Comm comm; 330dd5b3ca6SJunchao Zhang PetscMPIInt size, rank; 331dd5b3ca6SJunchao Zhang PetscInt i, j; 332dd5b3ca6SJunchao Zhang 333dd5b3ca6SJunchao Zhang PetscFunctionBegin; 334dd5b3ca6SJunchao Zhang /* Lazily construct these large arrays if users really need them for this type of SF. Very likely, they do not */ 3359566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)sf, &comm)); 3369566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 3379566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 338dd5b3ca6SJunchao Zhang if (niranks) *niranks = size; 339dd5b3ca6SJunchao Zhang 340dd5b3ca6SJunchao Zhang /* PetscSF_Basic has distinguished incoming ranks. Here we do not need that. But we must put self as the first and 341dd5b3ca6SJunchao Zhang sort other ranks. See comments in PetscSFSetUp_Basic about MatGetBrowsOfAoCols_MPIAIJ on why. 342dd5b3ca6SJunchao Zhang */ 343dd5b3ca6SJunchao Zhang if (iranks) { 344dd5b3ca6SJunchao Zhang if (!dat->iranks) { 3459566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size, &dat->iranks)); 346dd5b3ca6SJunchao Zhang dat->iranks[0] = rank; 3479371c9d4SSatish Balay for (i = 0, j = 1; i < size; i++) { 3489371c9d4SSatish Balay if (i == rank) continue; 3499371c9d4SSatish Balay dat->iranks[j++] = i; 3509371c9d4SSatish Balay } 351dd5b3ca6SJunchao Zhang } 352*66100624SStefano Zampini *iranks = dat->iranks; /* dat->iranks was init'ed to NULL by PetscNew */ 353dd5b3ca6SJunchao Zhang } 354dd5b3ca6SJunchao Zhang 355dd5b3ca6SJunchao Zhang if (ioffset) { 356dd5b3ca6SJunchao Zhang if (!dat->ioffset) { 3579566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(size + 1, &dat->ioffset)); 358dd5b3ca6SJunchao Zhang for (i = 0; i <= size; i++) dat->ioffset[i] = i * sf->nroots; 359dd5b3ca6SJunchao Zhang } 360dd5b3ca6SJunchao Zhang *ioffset = dat->ioffset; 361dd5b3ca6SJunchao Zhang } 362dd5b3ca6SJunchao Zhang 363dd5b3ca6SJunchao Zhang if (irootloc) { 364dd5b3ca6SJunchao Zhang if (!dat->irootloc) { 3659566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(sf->nleaves, &dat->irootloc)); 366dd5b3ca6SJunchao Zhang for (i = 0; i < size; i++) { 367dd5b3ca6SJunchao Zhang for (j = 0; j < sf->nroots; j++) dat->irootloc[i * sf->nroots + j] = j; 368dd5b3ca6SJunchao Zhang } 369dd5b3ca6SJunchao Zhang } 370dd5b3ca6SJunchao Zhang *irootloc = dat->irootloc; 371dd5b3ca6SJunchao Zhang } 372dd5b3ca6SJunchao Zhang PetscFunctionReturn(0); 373dd5b3ca6SJunchao Zhang } 374dd5b3ca6SJunchao Zhang 375d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode PetscSFCreateLocalSF_Allgatherv(PetscSF sf, PetscSF *out) 376d71ae5a4SJacob Faibussowitsch { 377dd5b3ca6SJunchao Zhang PetscInt i, nroots, nleaves, rstart, *ilocal; 378dd5b3ca6SJunchao Zhang PetscSFNode *iremote; 379dd5b3ca6SJunchao Zhang PetscSF lsf; 380dd5b3ca6SJunchao Zhang 381dd5b3ca6SJunchao Zhang PetscFunctionBegin; 382eb02082bSJunchao Zhang nleaves = sf->nleaves ? sf->nroots : 0; /* sf->nleaves can be zero with SFGather(v) */ 383eb02082bSJunchao Zhang nroots = nleaves; 3849566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nleaves, &ilocal)); 3859566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nleaves, &iremote)); 3869566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetRange(sf->map, &rstart, NULL)); 387dd5b3ca6SJunchao Zhang 388dd5b3ca6SJunchao Zhang for (i = 0; i < nleaves; i++) { 389dd5b3ca6SJunchao Zhang ilocal[i] = rstart + i; /* lsf does not change leave indices */ 390dd5b3ca6SJunchao Zhang iremote[i].rank = 0; /* rank in PETSC_COMM_SELF */ 391dd5b3ca6SJunchao Zhang iremote[i].index = i; /* root index */ 392dd5b3ca6SJunchao Zhang } 393dd5b3ca6SJunchao Zhang 3949566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PETSC_COMM_SELF, &lsf)); 3959566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(lsf, nroots, nleaves, ilocal, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER)); 3969566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(lsf)); 397dd5b3ca6SJunchao Zhang *out = lsf; 398dd5b3ca6SJunchao Zhang PetscFunctionReturn(0); 399dd5b3ca6SJunchao Zhang } 400dd5b3ca6SJunchao Zhang 401d71ae5a4SJacob Faibussowitsch PETSC_INTERN PetscErrorCode PetscSFCreate_Allgatherv(PetscSF sf) 402d71ae5a4SJacob Faibussowitsch { 403dd5b3ca6SJunchao Zhang PetscSF_Allgatherv *dat = (PetscSF_Allgatherv *)sf->data; 404dd5b3ca6SJunchao Zhang 405dd5b3ca6SJunchao Zhang PetscFunctionBegin; 406ad227feaSJunchao Zhang sf->ops->BcastEnd = PetscSFBcastEnd_Basic; 4079319200aSJunchao Zhang sf->ops->ReduceEnd = PetscSFReduceEnd_Allgatherv; 408cd620004SJunchao Zhang 409dd5b3ca6SJunchao Zhang sf->ops->SetUp = PetscSFSetUp_Allgatherv; 410dd5b3ca6SJunchao Zhang sf->ops->Reset = PetscSFReset_Allgatherv; 411dd5b3ca6SJunchao Zhang sf->ops->Destroy = PetscSFDestroy_Allgatherv; 412dd5b3ca6SJunchao Zhang sf->ops->GetRootRanks = PetscSFGetRootRanks_Allgatherv; 413dd5b3ca6SJunchao Zhang sf->ops->GetLeafRanks = PetscSFGetLeafRanks_Allgatherv; 414dd5b3ca6SJunchao Zhang sf->ops->GetGraph = PetscSFGetGraph_Allgatherv; 415ad227feaSJunchao Zhang sf->ops->BcastBegin = PetscSFBcastBegin_Allgatherv; 416dd5b3ca6SJunchao Zhang sf->ops->ReduceBegin = PetscSFReduceBegin_Allgatherv; 417dd5b3ca6SJunchao Zhang sf->ops->FetchAndOpBegin = PetscSFFetchAndOpBegin_Allgatherv; 418dd5b3ca6SJunchao Zhang sf->ops->FetchAndOpEnd = PetscSFFetchAndOpEnd_Allgatherv; 419dd5b3ca6SJunchao Zhang sf->ops->CreateLocalSF = PetscSFCreateLocalSF_Allgatherv; 420dd5b3ca6SJunchao Zhang sf->ops->BcastToZero = PetscSFBcastToZero_Allgatherv; 421dd5b3ca6SJunchao Zhang 4224dfa11a4SJacob Faibussowitsch PetscCall(PetscNew(&dat)); 423*66100624SStefano Zampini dat->bcast_root = -1; 424dd5b3ca6SJunchao Zhang sf->data = (void *)dat; 425dd5b3ca6SJunchao Zhang PetscFunctionReturn(0); 426dd5b3ca6SJunchao Zhang } 427