xref: /petsc/src/vec/is/sf/interface/sf.c (revision 00816365229eff0fcb3567887feb4c4abe2b0e86)
1af0996ceSBarry Smith #include <petsc/private/sfimpl.h> /*I "petscsf.h" I*/
2c4e6a40aSLawrence Mitchell #include <petsc/private/hashseti.h>
395fce210SBarry Smith #include <petscctable.h>
495fce210SBarry Smith 
595fce210SBarry Smith #if defined(PETSC_USE_DEBUG)
695fce210SBarry Smith #  define PetscSFCheckGraphSet(sf,arg) do {                          \
795fce210SBarry Smith     if (PetscUnlikely(!(sf)->graphset))                              \
8dd5b3ca6SJunchao Zhang       SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Must call PetscSFSetGraph() or PetscSFSetGraphWithPattern() on argument %D \"%s\" before %s()",(arg),#sf,PETSC_FUNCTION_NAME); \
995fce210SBarry Smith   } while (0)
1095fce210SBarry Smith #else
1195fce210SBarry Smith #  define PetscSFCheckGraphSet(sf,arg) do {} while (0)
1295fce210SBarry Smith #endif
1395fce210SBarry Smith 
1495fce210SBarry Smith const char *const PetscSFDuplicateOptions[] = {"CONFONLY","RANKS","GRAPH","PetscSFDuplicateOption","PETSCSF_DUPLICATE_",0};
1595fce210SBarry Smith 
168af6ec1cSBarry Smith /*@
1795fce210SBarry Smith    PetscSFCreate - create a star forest communication context
1895fce210SBarry Smith 
19d083f849SBarry Smith    Collective
2095fce210SBarry Smith 
2195fce210SBarry Smith    Input Arguments:
2295fce210SBarry Smith .  comm - communicator on which the star forest will operate
2395fce210SBarry Smith 
2495fce210SBarry Smith    Output Arguments:
2595fce210SBarry Smith .  sf - new star forest context
2695fce210SBarry Smith 
27dd5b3ca6SJunchao Zhang    Options Database Keys:
28dd5b3ca6SJunchao Zhang +  -sf_type basic     -Use MPI persistent Isend/Irecv for communication (Default)
29dd5b3ca6SJunchao Zhang .  -sf_type window    -Use MPI-3 one-sided window for communication
30dd5b3ca6SJunchao Zhang -  -sf_type neighbor  -Use MPI-3 neighborhood collectives for communication
31dd5b3ca6SJunchao Zhang 
3295fce210SBarry Smith    Level: intermediate
3395fce210SBarry Smith 
34dd5b3ca6SJunchao Zhang    Notes:
35dd5b3ca6SJunchao Zhang    When one knows the communication graph is one of the predefined graph, such as MPI_Alltoall, MPI_Allgatherv,
36dd5b3ca6SJunchao Zhang    MPI_Gatherv, one can create a PetscSF and then set its graph with PetscSFSetGraphWithPattern(). These special
37dd5b3ca6SJunchao Zhang    SFs are optimized and they have better performance than general SFs.
38dd5b3ca6SJunchao Zhang 
39dd5b3ca6SJunchao Zhang .seealso: PetscSFSetGraph(), PetscSFSetGraphWithPattern(), PetscSFDestroy()
4095fce210SBarry Smith @*/
4195fce210SBarry Smith PetscErrorCode PetscSFCreate(MPI_Comm comm,PetscSF *sf)
4295fce210SBarry Smith {
4395fce210SBarry Smith   PetscErrorCode ierr;
4495fce210SBarry Smith   PetscSF        b;
4595fce210SBarry Smith 
4695fce210SBarry Smith   PetscFunctionBegin;
4795fce210SBarry Smith   PetscValidPointer(sf,2);
48607a6623SBarry Smith   ierr = PetscSFInitializePackage();CHKERRQ(ierr);
4995fce210SBarry Smith 
5073107ff1SLisandro Dalcin   ierr = PetscHeaderCreate(b,PETSCSF_CLASSID,"PetscSF","Star Forest","PetscSF",comm,PetscSFDestroy,PetscSFView);CHKERRQ(ierr);
5195fce210SBarry Smith 
5295fce210SBarry Smith   b->nroots    = -1;
5395fce210SBarry Smith   b->nleaves   = -1;
5429046d53SLisandro Dalcin   b->minleaf   = PETSC_MAX_INT;
5529046d53SLisandro Dalcin   b->maxleaf   = PETSC_MIN_INT;
5695fce210SBarry Smith   b->nranks    = -1;
5795fce210SBarry Smith   b->rankorder = PETSC_TRUE;
5895fce210SBarry Smith   b->ingroup   = MPI_GROUP_NULL;
5995fce210SBarry Smith   b->outgroup  = MPI_GROUP_NULL;
6095fce210SBarry Smith   b->graphset  = PETSC_FALSE;
6195fce210SBarry Smith 
6295fce210SBarry Smith   *sf = b;
6395fce210SBarry Smith   PetscFunctionReturn(0);
6495fce210SBarry Smith }
6595fce210SBarry Smith 
6629046d53SLisandro Dalcin /*@
6795fce210SBarry Smith    PetscSFReset - Reset a star forest so that different sizes or neighbors can be used
6895fce210SBarry Smith 
6995fce210SBarry Smith    Collective
7095fce210SBarry Smith 
7195fce210SBarry Smith    Input Arguments:
7295fce210SBarry Smith .  sf - star forest
7395fce210SBarry Smith 
7495fce210SBarry Smith    Level: advanced
7595fce210SBarry Smith 
7695fce210SBarry Smith .seealso: PetscSFCreate(), PetscSFSetGraph(), PetscSFDestroy()
7795fce210SBarry Smith @*/
7895fce210SBarry Smith PetscErrorCode PetscSFReset(PetscSF sf)
7995fce210SBarry Smith {
8095fce210SBarry Smith   PetscErrorCode ierr;
8195fce210SBarry Smith 
8295fce210SBarry Smith   PetscFunctionBegin;
8395fce210SBarry Smith   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
8479715d56SJed Brown   if (sf->ops->Reset) {ierr = (*sf->ops->Reset)(sf);CHKERRQ(ierr);}
8529046d53SLisandro Dalcin   sf->nroots   = -1;
8629046d53SLisandro Dalcin   sf->nleaves  = -1;
8729046d53SLisandro Dalcin   sf->minleaf  = PETSC_MAX_INT;
8829046d53SLisandro Dalcin   sf->maxleaf  = PETSC_MIN_INT;
8995fce210SBarry Smith   sf->mine     = NULL;
9095fce210SBarry Smith   sf->remote   = NULL;
9129046d53SLisandro Dalcin   sf->graphset = PETSC_FALSE;
9229046d53SLisandro Dalcin   ierr = PetscFree(sf->mine_alloc);CHKERRQ(ierr);
9395fce210SBarry Smith   ierr = PetscFree(sf->remote_alloc);CHKERRQ(ierr);
9421c688dcSJed Brown   sf->nranks = -1;
9529046d53SLisandro Dalcin   ierr = PetscFree4(sf->ranks,sf->roffset,sf->rmine,sf->rremote);CHKERRQ(ierr);
96eb02082bSJunchao Zhang #if defined(PETSC_HAVE_CUDA)
97cd620004SJunchao Zhang   {
98cd620004SJunchao Zhang   PetscInt  i;
99cd620004SJunchao Zhang   for (i=0; i<2; i++) {if (sf->rmine_d[i]) {cudaError_t err = cudaFree(sf->rmine_d[i]);CHKERRCUDA(err);sf->rmine_d[i]=NULL;}}
100cd620004SJunchao Zhang   }
101eb02082bSJunchao Zhang #endif
10229046d53SLisandro Dalcin   sf->degreeknown = PETSC_FALSE;
10395fce210SBarry Smith   ierr = PetscFree(sf->degree);CHKERRQ(ierr);
10495fce210SBarry Smith   if (sf->ingroup  != MPI_GROUP_NULL) {ierr = MPI_Group_free(&sf->ingroup);CHKERRQ(ierr);}
10595fce210SBarry Smith   if (sf->outgroup != MPI_GROUP_NULL) {ierr = MPI_Group_free(&sf->outgroup);CHKERRQ(ierr);}
10695fce210SBarry Smith   ierr = PetscSFDestroy(&sf->multi);CHKERRQ(ierr);
107dd5b3ca6SJunchao Zhang   ierr = PetscLayoutDestroy(&sf->map);CHKERRQ(ierr);
10895fce210SBarry Smith   sf->setupcalled = PETSC_FALSE;
10995fce210SBarry Smith   PetscFunctionReturn(0);
11095fce210SBarry Smith }
11195fce210SBarry Smith 
11295fce210SBarry Smith /*@C
11329046d53SLisandro Dalcin    PetscSFSetType - Set the PetscSF communication implementation
11495fce210SBarry Smith 
11595fce210SBarry Smith    Collective on PetscSF
11695fce210SBarry Smith 
11795fce210SBarry Smith    Input Parameters:
11895fce210SBarry Smith +  sf - the PetscSF context
11995fce210SBarry Smith -  type - a known method
12095fce210SBarry Smith 
12195fce210SBarry Smith    Options Database Key:
12295fce210SBarry Smith .  -sf_type <type> - Sets the method; use -help for a list
12370616304SStefano Zampini    of available methods (for instance, window, basic, neighbor)
12495fce210SBarry Smith 
12595fce210SBarry Smith    Notes:
12695fce210SBarry Smith    See "include/petscsf.h" for available methods (for instance)
12795fce210SBarry Smith +    PETSCSFWINDOW - MPI-2/3 one-sided
12895fce210SBarry Smith -    PETSCSFBASIC - basic implementation using MPI-1 two-sided
12995fce210SBarry Smith 
13095fce210SBarry Smith   Level: intermediate
13195fce210SBarry Smith 
13295fce210SBarry Smith .seealso: PetscSFType, PetscSFCreate()
13395fce210SBarry Smith @*/
13495fce210SBarry Smith PetscErrorCode PetscSFSetType(PetscSF sf,PetscSFType type)
13595fce210SBarry Smith {
13695fce210SBarry Smith   PetscErrorCode ierr,(*r)(PetscSF);
13795fce210SBarry Smith   PetscBool      match;
13895fce210SBarry Smith 
13995fce210SBarry Smith   PetscFunctionBegin;
14095fce210SBarry Smith   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
14195fce210SBarry Smith   PetscValidCharPointer(type,2);
14295fce210SBarry Smith 
14395fce210SBarry Smith   ierr = PetscObjectTypeCompare((PetscObject)sf,type,&match);CHKERRQ(ierr);
14495fce210SBarry Smith   if (match) PetscFunctionReturn(0);
14595fce210SBarry Smith 
146adc40e5bSBarry Smith   ierr = PetscFunctionListFind(PetscSFList,type,&r);CHKERRQ(ierr);
14795fce210SBarry Smith   if (!r) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_UNKNOWN_TYPE,"Unable to find requested PetscSF type %s",type);
14829046d53SLisandro Dalcin   /* Destroy the previous PetscSF implementation context */
14929046d53SLisandro Dalcin   if (sf->ops->Destroy) {ierr = (*(sf)->ops->Destroy)(sf);CHKERRQ(ierr);}
15095fce210SBarry Smith   ierr = PetscMemzero(sf->ops,sizeof(*sf->ops));CHKERRQ(ierr);
15195fce210SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)sf,type);CHKERRQ(ierr);
15295fce210SBarry Smith   ierr = (*r)(sf);CHKERRQ(ierr);
15395fce210SBarry Smith   PetscFunctionReturn(0);
15495fce210SBarry Smith }
15595fce210SBarry Smith 
15629046d53SLisandro Dalcin /*@C
15729046d53SLisandro Dalcin   PetscSFGetType - Get the PetscSF communication implementation
15829046d53SLisandro Dalcin 
15929046d53SLisandro Dalcin   Not Collective
16029046d53SLisandro Dalcin 
16129046d53SLisandro Dalcin   Input Parameter:
16229046d53SLisandro Dalcin . sf  - the PetscSF context
16329046d53SLisandro Dalcin 
16429046d53SLisandro Dalcin   Output Parameter:
16529046d53SLisandro Dalcin . type - the PetscSF type name
16629046d53SLisandro Dalcin 
16729046d53SLisandro Dalcin   Level: intermediate
16829046d53SLisandro Dalcin 
16929046d53SLisandro Dalcin .seealso: PetscSFSetType(), PetscSFCreate()
17029046d53SLisandro Dalcin @*/
17129046d53SLisandro Dalcin PetscErrorCode PetscSFGetType(PetscSF sf, PetscSFType *type)
17229046d53SLisandro Dalcin {
17329046d53SLisandro Dalcin   PetscFunctionBegin;
17429046d53SLisandro Dalcin   PetscValidHeaderSpecific(sf, PETSCSF_CLASSID,1);
17529046d53SLisandro Dalcin   PetscValidPointer(type,2);
17629046d53SLisandro Dalcin   *type = ((PetscObject)sf)->type_name;
17729046d53SLisandro Dalcin   PetscFunctionReturn(0);
17829046d53SLisandro Dalcin }
17929046d53SLisandro Dalcin 
180d36d33e4SMatthew G. Knepley /*@
18195fce210SBarry Smith    PetscSFDestroy - destroy star forest
18295fce210SBarry Smith 
18395fce210SBarry Smith    Collective
18495fce210SBarry Smith 
18595fce210SBarry Smith    Input Arguments:
18695fce210SBarry Smith .  sf - address of star forest
18795fce210SBarry Smith 
18895fce210SBarry Smith    Level: intermediate
18995fce210SBarry Smith 
19095fce210SBarry Smith .seealso: PetscSFCreate(), PetscSFReset()
19195fce210SBarry Smith @*/
19295fce210SBarry Smith PetscErrorCode PetscSFDestroy(PetscSF *sf)
19395fce210SBarry Smith {
19495fce210SBarry Smith   PetscErrorCode ierr;
19595fce210SBarry Smith 
19695fce210SBarry Smith   PetscFunctionBegin;
19795fce210SBarry Smith   if (!*sf) PetscFunctionReturn(0);
19895fce210SBarry Smith   PetscValidHeaderSpecific((*sf),PETSCSF_CLASSID,1);
19929046d53SLisandro Dalcin   if (--((PetscObject)(*sf))->refct > 0) {*sf = NULL; PetscFunctionReturn(0);}
20095fce210SBarry Smith   ierr = PetscSFReset(*sf);CHKERRQ(ierr);
20195fce210SBarry Smith   if ((*sf)->ops->Destroy) {ierr = (*(*sf)->ops->Destroy)(*sf);CHKERRQ(ierr);}
20295fce210SBarry Smith   ierr = PetscHeaderDestroy(sf);CHKERRQ(ierr);
20395fce210SBarry Smith   PetscFunctionReturn(0);
20495fce210SBarry Smith }
20595fce210SBarry Smith 
206c4e6a40aSLawrence Mitchell static PetscErrorCode PetscSFCheckGraphValid_Private(PetscSF sf)
207c4e6a40aSLawrence Mitchell {
208c4e6a40aSLawrence Mitchell #if defined(PETSC_USE_DEBUG)
209c4e6a40aSLawrence Mitchell   PetscInt           i, nleaves;
210c4e6a40aSLawrence Mitchell   PetscMPIInt        size;
211c4e6a40aSLawrence Mitchell   const PetscInt    *ilocal;
212c4e6a40aSLawrence Mitchell   const PetscSFNode *iremote;
213c4e6a40aSLawrence Mitchell   PetscErrorCode     ierr;
214c4e6a40aSLawrence Mitchell 
215c4e6a40aSLawrence Mitchell   PetscFunctionBegin;
216c4e6a40aSLawrence Mitchell   if (!sf->graphset) PetscFunctionReturn(0);
217c4e6a40aSLawrence Mitchell   ierr = PetscSFGetGraph(sf,NULL,&nleaves,&ilocal,&iremote);CHKERRQ(ierr);
218c4e6a40aSLawrence Mitchell   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)sf),&size);CHKERRQ(ierr);
219c4e6a40aSLawrence Mitchell   for (i = 0; i < nleaves; i++) {
220c4e6a40aSLawrence Mitchell     const PetscInt rank = iremote[i].rank;
221c4e6a40aSLawrence Mitchell     const PetscInt remote = iremote[i].index;
222c4e6a40aSLawrence Mitchell     const PetscInt leaf = ilocal ? ilocal[i] : i;
223c4e6a40aSLawrence Mitchell     if (rank < 0 || rank >= size) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Provided rank (%D) for remote %D is invalid, should be in [0, %d)",rank,i,size);
224c4e6a40aSLawrence Mitchell     if (remote < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Provided index (%D) for remote %D is invalid, should be >= 0",remote,i);
225c4e6a40aSLawrence Mitchell     if (leaf < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Provided location (%D) for leaf %D is invalid, should be >= 0",leaf,i);
226c4e6a40aSLawrence Mitchell   }
227c4e6a40aSLawrence Mitchell   PetscFunctionReturn(0);
228c4e6a40aSLawrence Mitchell #else
229c4e6a40aSLawrence Mitchell   PetscFunctionBegin;
230c4e6a40aSLawrence Mitchell   PetscFunctionReturn(0);
231c4e6a40aSLawrence Mitchell #endif
232c4e6a40aSLawrence Mitchell }
233c4e6a40aSLawrence Mitchell 
23495fce210SBarry Smith /*@
23595fce210SBarry Smith    PetscSFSetUp - set up communication structures
23695fce210SBarry Smith 
23795fce210SBarry Smith    Collective
23895fce210SBarry Smith 
23995fce210SBarry Smith    Input Arguments:
24095fce210SBarry Smith .  sf - star forest communication object
24195fce210SBarry Smith 
24295fce210SBarry Smith    Level: beginner
24395fce210SBarry Smith 
24495fce210SBarry Smith .seealso: PetscSFSetFromOptions(), PetscSFSetType()
24595fce210SBarry Smith @*/
24695fce210SBarry Smith PetscErrorCode PetscSFSetUp(PetscSF sf)
24795fce210SBarry Smith {
24895fce210SBarry Smith   PetscErrorCode ierr;
24995fce210SBarry Smith 
25095fce210SBarry Smith   PetscFunctionBegin;
25129046d53SLisandro Dalcin   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
25229046d53SLisandro Dalcin   PetscSFCheckGraphSet(sf,1);
25395fce210SBarry Smith   if (sf->setupcalled) PetscFunctionReturn(0);
254c4e6a40aSLawrence Mitchell   ierr = PetscSFCheckGraphValid_Private(sf);CHKERRQ(ierr);
25595fce210SBarry Smith   if (!((PetscObject)sf)->type_name) {ierr = PetscSFSetType(sf,PETSCSFBASIC);CHKERRQ(ierr);}
25629046d53SLisandro Dalcin   ierr = PetscLogEventBegin(PETSCSF_SetUp,sf,0,0,0);CHKERRQ(ierr);
25795fce210SBarry Smith   if (sf->ops->SetUp) {ierr = (*sf->ops->SetUp)(sf);CHKERRQ(ierr);}
25829046d53SLisandro Dalcin   ierr = PetscLogEventEnd(PETSCSF_SetUp,sf,0,0,0);CHKERRQ(ierr);
25995fce210SBarry Smith   sf->setupcalled = PETSC_TRUE;
26095fce210SBarry Smith   PetscFunctionReturn(0);
26195fce210SBarry Smith }
26295fce210SBarry Smith 
2638af6ec1cSBarry Smith /*@
26495fce210SBarry Smith    PetscSFSetFromOptions - set PetscSF options using the options database
26595fce210SBarry Smith 
26695fce210SBarry Smith    Logically Collective
26795fce210SBarry Smith 
26895fce210SBarry Smith    Input Arguments:
26995fce210SBarry Smith .  sf - star forest
27095fce210SBarry Smith 
27195fce210SBarry Smith    Options Database Keys:
27260263706SJed Brown +  -sf_type               - implementation type, see PetscSFSetType()
27351ccb202SJunchao Zhang .  -sf_rank_order         - sort composite points for gathers and scatters in rank order, gathers are non-deterministic otherwise
274cd620004SJunchao Zhang -  -sf_use_default_stream - Assume callers of SF computed the input root/leafdata with the default cuda stream. SF will also
275cd620004SJunchao Zhang                             use the default stream to process data. Therefore, no stream synchronization is needed between SF and its caller.
27695fce210SBarry Smith 
27795fce210SBarry Smith    Level: intermediate
27895fce210SBarry Smith @*/
27995fce210SBarry Smith PetscErrorCode PetscSFSetFromOptions(PetscSF sf)
28095fce210SBarry Smith {
28195fce210SBarry Smith   PetscSFType    deft;
28295fce210SBarry Smith   char           type[256];
28395fce210SBarry Smith   PetscErrorCode ierr;
28495fce210SBarry Smith   PetscBool      flg;
28595fce210SBarry Smith 
28695fce210SBarry Smith   PetscFunctionBegin;
28795fce210SBarry Smith   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
28895fce210SBarry Smith   ierr = PetscObjectOptionsBegin((PetscObject)sf);CHKERRQ(ierr);
28995fce210SBarry Smith   deft = ((PetscObject)sf)->type_name ? ((PetscObject)sf)->type_name : PETSCSFBASIC;
29029046d53SLisandro Dalcin   ierr = PetscOptionsFList("-sf_type","PetscSF implementation type","PetscSFSetType",PetscSFList,deft,type,sizeof(type),&flg);CHKERRQ(ierr);
29195fce210SBarry Smith   ierr = PetscSFSetType(sf,flg ? type : deft);CHKERRQ(ierr);
29295fce210SBarry Smith   ierr = PetscOptionsBool("-sf_rank_order","sort composite points for gathers and scatters in rank order, gathers are non-deterministic otherwise","PetscSFSetRankOrder",sf->rankorder,&sf->rankorder,NULL);CHKERRQ(ierr);
293cd620004SJunchao Zhang   sf->use_default_stream = PETSC_FALSE;
294cd620004SJunchao Zhang   ierr = PetscOptionsBool("-sf_use_default_stream","Assume SF's input and output root/leafdata is computed on the default stream","PetscSFSetFromOptions",sf->use_default_stream,&sf->use_default_stream,NULL);CHKERRQ(ierr);
295e55864a3SBarry Smith   if (sf->ops->SetFromOptions) {ierr = (*sf->ops->SetFromOptions)(PetscOptionsObject,sf);CHKERRQ(ierr);}
29695fce210SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
29795fce210SBarry Smith   PetscFunctionReturn(0);
29895fce210SBarry Smith }
29995fce210SBarry Smith 
30029046d53SLisandro Dalcin /*@
30195fce210SBarry Smith    PetscSFSetRankOrder - sort multi-points for gathers and scatters by rank order
30295fce210SBarry Smith 
30395fce210SBarry Smith    Logically Collective
30495fce210SBarry Smith 
30595fce210SBarry Smith    Input Arguments:
30695fce210SBarry Smith +  sf - star forest
30795fce210SBarry Smith -  flg - PETSC_TRUE to sort, PETSC_FALSE to skip sorting (lower setup cost, but non-deterministic)
30895fce210SBarry Smith 
30995fce210SBarry Smith    Level: advanced
31095fce210SBarry Smith 
31195fce210SBarry Smith .seealso: PetscSFGatherBegin(), PetscSFScatterBegin()
31295fce210SBarry Smith @*/
31395fce210SBarry Smith PetscErrorCode PetscSFSetRankOrder(PetscSF sf,PetscBool flg)
31495fce210SBarry Smith {
31595fce210SBarry Smith   PetscFunctionBegin;
31695fce210SBarry Smith   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
31795fce210SBarry Smith   PetscValidLogicalCollectiveBool(sf,flg,2);
31895fce210SBarry Smith   if (sf->multi) SETERRQ(PetscObjectComm((PetscObject)sf),PETSC_ERR_ARG_WRONGSTATE,"Rank ordering must be set before first call to PetscSFGatherBegin() or PetscSFScatterBegin()");
31995fce210SBarry Smith   sf->rankorder = flg;
32095fce210SBarry Smith   PetscFunctionReturn(0);
32195fce210SBarry Smith }
32295fce210SBarry Smith 
3238af6ec1cSBarry Smith /*@
32495fce210SBarry Smith    PetscSFSetGraph - Set a parallel star forest
32595fce210SBarry Smith 
32695fce210SBarry Smith    Collective
32795fce210SBarry Smith 
32895fce210SBarry Smith    Input Arguments:
32995fce210SBarry Smith +  sf - star forest
33095fce210SBarry Smith .  nroots - number of root vertices on the current process (these are possible targets for other process to attach leaves)
33195fce210SBarry Smith .  nleaves - number of leaf vertices on the current process, each of these references a root on any process
332c4e6a40aSLawrence Mitchell .  ilocal - locations of leaves in leafdata buffers, pass NULL for contiguous storage (locations must be >= 0, enforced
333c4e6a40aSLawrence Mitchell during setup in debug mode)
33495fce210SBarry Smith .  localmode - copy mode for ilocal
335c4e6a40aSLawrence Mitchell .  iremote - remote locations of root vertices for each leaf on the current process (locations must be >= 0, enforced
336c4e6a40aSLawrence Mitchell during setup in debug mode)
33795fce210SBarry Smith -  remotemode - copy mode for iremote
33895fce210SBarry Smith 
33995fce210SBarry Smith    Level: intermediate
34095fce210SBarry Smith 
34195452b02SPatrick Sanan    Notes:
34295452b02SPatrick Sanan     In Fortran you must use PETSC_COPY_VALUES for localmode and remotemode
34338ab3f8aSBarry Smith 
3442ad1e87fSLisandro Dalcin    Developers Note: Local indices which are the identity permutation in the range [0,nleaves) are discarded as they
3452ad1e87fSLisandro Dalcin    encode contiguous storage. In such case, if localmode is PETSC_OWN_POINTER, the memory is deallocated as it is not
3462ad1e87fSLisandro Dalcin    needed
3472ad1e87fSLisandro Dalcin 
348c4e6a40aSLawrence Mitchell    Developers Note: This object does not necessarily encode a true star forest in the graph theoretic sense, since leaf
349c4e6a40aSLawrence Mitchell    indices are not required to be unique. Some functions, however, rely on unique leaf indices (checked in debug mode).
350c4e6a40aSLawrence Mitchell 
35195fce210SBarry Smith .seealso: PetscSFCreate(), PetscSFView(), PetscSFGetGraph()
35295fce210SBarry Smith @*/
35395fce210SBarry Smith PetscErrorCode PetscSFSetGraph(PetscSF sf,PetscInt nroots,PetscInt nleaves,const PetscInt *ilocal,PetscCopyMode localmode,const PetscSFNode *iremote,PetscCopyMode remotemode)
35495fce210SBarry Smith {
35595fce210SBarry Smith   PetscErrorCode ierr;
35695fce210SBarry Smith 
35795fce210SBarry Smith   PetscFunctionBegin;
35895fce210SBarry Smith   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
35929046d53SLisandro Dalcin   if (nleaves > 0 && ilocal) PetscValidIntPointer(ilocal,4);
36029046d53SLisandro Dalcin   if (nleaves > 0) PetscValidPointer(iremote,6);
36129046d53SLisandro Dalcin   if (nroots  < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"nroots %D, cannot be negative",nroots);
36295fce210SBarry Smith   if (nleaves < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"nleaves %D, cannot be negative",nleaves);
36329046d53SLisandro Dalcin 
3642a67d2daSStefano Zampini   if (sf->nroots >= 0) { /* Reset only if graph already set */
36595fce210SBarry Smith     ierr = PetscSFReset(sf);CHKERRQ(ierr);
3662a67d2daSStefano Zampini   }
3672a67d2daSStefano Zampini 
36829046d53SLisandro Dalcin   ierr = PetscLogEventBegin(PETSCSF_SetGraph,sf,0,0,0);CHKERRQ(ierr);
36929046d53SLisandro Dalcin 
37095fce210SBarry Smith   sf->nroots  = nroots;
37195fce210SBarry Smith   sf->nleaves = nleaves;
37229046d53SLisandro Dalcin 
37329046d53SLisandro Dalcin   if (nleaves && ilocal) {
37421c688dcSJed Brown     PetscInt i;
37529046d53SLisandro Dalcin     PetscInt minleaf = PETSC_MAX_INT;
37629046d53SLisandro Dalcin     PetscInt maxleaf = PETSC_MIN_INT;
3772ad1e87fSLisandro Dalcin     int      contiguous = 1;
37829046d53SLisandro Dalcin     for (i=0; i<nleaves; i++) {
37929046d53SLisandro Dalcin       minleaf = PetscMin(minleaf,ilocal[i]);
38029046d53SLisandro Dalcin       maxleaf = PetscMax(maxleaf,ilocal[i]);
3812ad1e87fSLisandro Dalcin       contiguous &= (ilocal[i] == i);
38229046d53SLisandro Dalcin     }
38329046d53SLisandro Dalcin     sf->minleaf = minleaf;
38429046d53SLisandro Dalcin     sf->maxleaf = maxleaf;
3852ad1e87fSLisandro Dalcin     if (contiguous) {
3862ad1e87fSLisandro Dalcin       if (localmode == PETSC_OWN_POINTER) {
3872ad1e87fSLisandro Dalcin         ierr = PetscFree(ilocal);CHKERRQ(ierr);
3882ad1e87fSLisandro Dalcin       }
3892ad1e87fSLisandro Dalcin       ilocal = NULL;
3902ad1e87fSLisandro Dalcin     }
39129046d53SLisandro Dalcin   } else {
39229046d53SLisandro Dalcin     sf->minleaf = 0;
39329046d53SLisandro Dalcin     sf->maxleaf = nleaves - 1;
39429046d53SLisandro Dalcin   }
39529046d53SLisandro Dalcin 
39629046d53SLisandro Dalcin   if (ilocal) {
39795fce210SBarry Smith     switch (localmode) {
39895fce210SBarry Smith     case PETSC_COPY_VALUES:
399785e854fSJed Brown       ierr = PetscMalloc1(nleaves,&sf->mine_alloc);CHKERRQ(ierr);
400580bdb30SBarry Smith       ierr = PetscArraycpy(sf->mine_alloc,ilocal,nleaves);CHKERRQ(ierr);
40195fce210SBarry Smith       sf->mine = sf->mine_alloc;
40295fce210SBarry Smith       break;
40395fce210SBarry Smith     case PETSC_OWN_POINTER:
40495fce210SBarry Smith       sf->mine_alloc = (PetscInt*)ilocal;
40595fce210SBarry Smith       sf->mine       = sf->mine_alloc;
40695fce210SBarry Smith       break;
40795fce210SBarry Smith     case PETSC_USE_POINTER:
40829046d53SLisandro Dalcin       sf->mine_alloc = NULL;
40995fce210SBarry Smith       sf->mine       = (PetscInt*)ilocal;
41095fce210SBarry Smith       break;
41195fce210SBarry Smith     default: SETERRQ(PetscObjectComm((PetscObject)sf),PETSC_ERR_ARG_OUTOFRANGE,"Unknown localmode");
41295fce210SBarry Smith     }
41395fce210SBarry Smith   }
41429046d53SLisandro Dalcin 
41595fce210SBarry Smith   switch (remotemode) {
41695fce210SBarry Smith   case PETSC_COPY_VALUES:
417785e854fSJed Brown     ierr = PetscMalloc1(nleaves,&sf->remote_alloc);CHKERRQ(ierr);
418580bdb30SBarry Smith     ierr = PetscArraycpy(sf->remote_alloc,iremote,nleaves);CHKERRQ(ierr);
41995fce210SBarry Smith     sf->remote = sf->remote_alloc;
42095fce210SBarry Smith     break;
42195fce210SBarry Smith   case PETSC_OWN_POINTER:
42295fce210SBarry Smith     sf->remote_alloc = (PetscSFNode*)iremote;
42395fce210SBarry Smith     sf->remote       = sf->remote_alloc;
42495fce210SBarry Smith     break;
42595fce210SBarry Smith   case PETSC_USE_POINTER:
42629046d53SLisandro Dalcin     sf->remote_alloc = NULL;
42795fce210SBarry Smith     sf->remote       = (PetscSFNode*)iremote;
42895fce210SBarry Smith     break;
42995fce210SBarry Smith   default: SETERRQ(PetscObjectComm((PetscObject)sf),PETSC_ERR_ARG_OUTOFRANGE,"Unknown remotemode");
43095fce210SBarry Smith   }
43195fce210SBarry Smith 
432563ffbabSMatthew G. Knepley   ierr = PetscLogEventEnd(PETSCSF_SetGraph,sf,0,0,0);CHKERRQ(ierr);
43329046d53SLisandro Dalcin   sf->graphset = PETSC_TRUE;
43495fce210SBarry Smith   PetscFunctionReturn(0);
43595fce210SBarry Smith }
43695fce210SBarry Smith 
43729046d53SLisandro Dalcin /*@
438dd5b3ca6SJunchao Zhang   PetscSFSetGraphWithPattern - Sets the graph of an SF with a specific pattern
439dd5b3ca6SJunchao Zhang 
440dd5b3ca6SJunchao Zhang   Collective
441dd5b3ca6SJunchao Zhang 
442dd5b3ca6SJunchao Zhang   Input Parameters:
443dd5b3ca6SJunchao Zhang + sf      - The PetscSF
444dd5b3ca6SJunchao Zhang . map     - Layout of roots over all processes (insignificant when pattern is PETSCSF_PATTERN_ALLTOALL)
445dd5b3ca6SJunchao Zhang - pattern - One of PETSCSF_PATTERN_ALLGATHER, PETSCSF_PATTERN_GATHER, PETSCSF_PATTERN_ALLTOALL
446dd5b3ca6SJunchao Zhang 
447dd5b3ca6SJunchao Zhang   Notes:
448dd5b3ca6SJunchao Zhang   It is easier to explain PetscSFPattern using vectors. Suppose we have an MPI vector x and its layout is map.
449dd5b3ca6SJunchao Zhang   n and N are local and global sizes of x respectively.
450dd5b3ca6SJunchao Zhang 
451dd5b3ca6SJunchao Zhang   With PETSCSF_PATTERN_ALLGATHER, the routine creates a graph that if one does Bcast on it, it will copy x to
452dd5b3ca6SJunchao Zhang   sequential vectors y on all ranks.
453dd5b3ca6SJunchao Zhang 
454dd5b3ca6SJunchao Zhang   With PETSCSF_PATTERN_GATHER, the routine creates a graph that if one does Bcast on it, it will copy x to a
455dd5b3ca6SJunchao Zhang   sequential vector y on rank 0.
456dd5b3ca6SJunchao Zhang 
457dd5b3ca6SJunchao Zhang   In above cases, entries of x are roots and entries of y are leaves.
458dd5b3ca6SJunchao Zhang 
459dd5b3ca6SJunchao Zhang   With PETSCSF_PATTERN_ALLTOALL, map is insignificant. Suppose NP is size of sf's communicator. The routine
460dd5b3ca6SJunchao Zhang   creates a graph that every rank has NP leaves and NP roots. On rank i, its leaf j is connected to root i
461dd5b3ca6SJunchao Zhang   of rank j. Here 0 <=i,j<NP. It is a kind of MPI_Alltoall with sendcount/recvcount being 1. Note that it does
462dd5b3ca6SJunchao Zhang   not mean one can not send multiple items. One just needs to create a new MPI datatype for the mulptiple data
463dd5b3ca6SJunchao Zhang   items with MPI_Type_contiguous() and use that as the <unit> argument in SF routines.
464dd5b3ca6SJunchao Zhang 
465dd5b3ca6SJunchao Zhang   In this case, roots and leaves are symmetric.
466dd5b3ca6SJunchao Zhang 
467dd5b3ca6SJunchao Zhang   Level: intermediate
468dd5b3ca6SJunchao Zhang  @*/
469dd5b3ca6SJunchao Zhang PetscErrorCode PetscSFSetGraphWithPattern(PetscSF sf,PetscLayout map,PetscSFPattern pattern)
470dd5b3ca6SJunchao Zhang {
471dd5b3ca6SJunchao Zhang   MPI_Comm       comm;
472dd5b3ca6SJunchao Zhang   PetscInt       n,N,res[2];
473dd5b3ca6SJunchao Zhang   PetscMPIInt    rank,size;
474dd5b3ca6SJunchao Zhang   PetscSFType    type;
475dd5b3ca6SJunchao Zhang   PetscErrorCode ierr;
476dd5b3ca6SJunchao Zhang 
477dd5b3ca6SJunchao Zhang   PetscFunctionBegin;
478dd5b3ca6SJunchao Zhang   ierr = PetscObjectGetComm((PetscObject)sf, &comm);CHKERRQ(ierr);
479dd5b3ca6SJunchao Zhang   if (pattern < PETSCSF_PATTERN_ALLGATHER || pattern > PETSCSF_PATTERN_ALLTOALL) SETERRQ1(comm,PETSC_ERR_ARG_OUTOFRANGE,"Unsupported PetscSFPattern %D\n",pattern);
480dd5b3ca6SJunchao Zhang   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
481dd5b3ca6SJunchao Zhang   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
482dd5b3ca6SJunchao Zhang 
483dd5b3ca6SJunchao Zhang   if (pattern == PETSCSF_PATTERN_ALLTOALL) {
484dd5b3ca6SJunchao Zhang     type = PETSCSFALLTOALL;
485dd5b3ca6SJunchao Zhang     ierr = PetscLayoutCreate(comm,&sf->map);CHKERRQ(ierr);
486dd5b3ca6SJunchao Zhang     ierr = PetscLayoutSetLocalSize(sf->map,size);CHKERRQ(ierr);
487dd5b3ca6SJunchao Zhang     ierr = PetscLayoutSetSize(sf->map,((PetscInt)size)*size);CHKERRQ(ierr);
488dd5b3ca6SJunchao Zhang     ierr = PetscLayoutSetUp(sf->map);CHKERRQ(ierr);
489dd5b3ca6SJunchao Zhang   } else {
490dd5b3ca6SJunchao Zhang     ierr   = PetscLayoutGetLocalSize(map,&n);CHKERRQ(ierr);
491dd5b3ca6SJunchao Zhang     ierr   = PetscLayoutGetSize(map,&N);CHKERRQ(ierr);
492dd5b3ca6SJunchao Zhang     res[0] = n;
493dd5b3ca6SJunchao Zhang     res[1] = -n;
494dd5b3ca6SJunchao Zhang     /* Check if n are same over all ranks so that we can optimize it */
495dd5b3ca6SJunchao Zhang     ierr   = MPIU_Allreduce(MPI_IN_PLACE,res,2,MPIU_INT,MPI_MAX,comm);CHKERRQ(ierr);
496dd5b3ca6SJunchao Zhang     if (res[0] == -res[1]) { /* same n */
497dd5b3ca6SJunchao Zhang       type = (pattern == PETSCSF_PATTERN_ALLGATHER) ? PETSCSFALLGATHER  : PETSCSFGATHER;
498dd5b3ca6SJunchao Zhang     } else {
499dd5b3ca6SJunchao Zhang       type = (pattern == PETSCSF_PATTERN_ALLGATHER) ? PETSCSFALLGATHERV : PETSCSFGATHERV;
500dd5b3ca6SJunchao Zhang     }
501dd5b3ca6SJunchao Zhang     ierr = PetscLayoutReference(map,&sf->map);CHKERRQ(ierr);
502dd5b3ca6SJunchao Zhang   }
503dd5b3ca6SJunchao Zhang   ierr = PetscSFSetType(sf,type);CHKERRQ(ierr);
504dd5b3ca6SJunchao Zhang 
505dd5b3ca6SJunchao Zhang   sf->pattern = pattern;
506dd5b3ca6SJunchao Zhang   sf->mine    = NULL; /* Contiguous */
507dd5b3ca6SJunchao Zhang 
508dd5b3ca6SJunchao Zhang   /* Set nleaves, nroots here in case user calls PetscSFGetGraph, which is legal to call even before PetscSFSetUp is called.
509dd5b3ca6SJunchao Zhang      Also set other easy stuff.
510dd5b3ca6SJunchao Zhang    */
511dd5b3ca6SJunchao Zhang   if (pattern == PETSCSF_PATTERN_ALLGATHER) {
512dd5b3ca6SJunchao Zhang     sf->nleaves      = N;
513dd5b3ca6SJunchao Zhang     sf->nroots       = n;
514dd5b3ca6SJunchao Zhang     sf->nranks       = size;
515dd5b3ca6SJunchao Zhang     sf->minleaf      = 0;
516dd5b3ca6SJunchao Zhang     sf->maxleaf      = N - 1;
517dd5b3ca6SJunchao Zhang   } else if (pattern == PETSCSF_PATTERN_GATHER) {
518dd5b3ca6SJunchao Zhang     sf->nleaves      = rank ? 0 : N;
519dd5b3ca6SJunchao Zhang     sf->nroots       = n;
520dd5b3ca6SJunchao Zhang     sf->nranks       = rank ? 0 : size;
521dd5b3ca6SJunchao Zhang     sf->minleaf      = 0;
522dd5b3ca6SJunchao Zhang     sf->maxleaf      = rank ? -1 : N - 1;
523dd5b3ca6SJunchao Zhang   } else if (pattern == PETSCSF_PATTERN_ALLTOALL) {
524dd5b3ca6SJunchao Zhang     sf->nleaves      = size;
525dd5b3ca6SJunchao Zhang     sf->nroots       = size;
526dd5b3ca6SJunchao Zhang     sf->nranks       = size;
527dd5b3ca6SJunchao Zhang     sf->minleaf      = 0;
528dd5b3ca6SJunchao Zhang     sf->maxleaf      = size - 1;
529dd5b3ca6SJunchao Zhang   }
530dd5b3ca6SJunchao Zhang   sf->ndranks  = 0; /* We do not need to separate out distinguished ranks for patterned graphs to improve communication performance */
531dd5b3ca6SJunchao Zhang   sf->graphset = PETSC_TRUE;
532dd5b3ca6SJunchao Zhang   PetscFunctionReturn(0);
533dd5b3ca6SJunchao Zhang }
534dd5b3ca6SJunchao Zhang 
535dd5b3ca6SJunchao Zhang /*@
53695fce210SBarry Smith    PetscSFCreateInverseSF - given a PetscSF in which all vertices have degree 1, creates the inverse map
53795fce210SBarry Smith 
53895fce210SBarry Smith    Collective
53995fce210SBarry Smith 
54095fce210SBarry Smith    Input Arguments:
541dd5b3ca6SJunchao Zhang 
54295fce210SBarry Smith .  sf - star forest to invert
54395fce210SBarry Smith 
54495fce210SBarry Smith    Output Arguments:
54595fce210SBarry Smith .  isf - inverse of sf
54695fce210SBarry Smith    Level: advanced
54795fce210SBarry Smith 
54895fce210SBarry Smith    Notes:
54995fce210SBarry Smith    All roots must have degree 1.
55095fce210SBarry Smith 
55195fce210SBarry Smith    The local space may be a permutation, but cannot be sparse.
55295fce210SBarry Smith 
55395fce210SBarry Smith .seealso: PetscSFSetGraph()
55495fce210SBarry Smith @*/
55595fce210SBarry Smith PetscErrorCode PetscSFCreateInverseSF(PetscSF sf,PetscSF *isf)
55695fce210SBarry Smith {
55795fce210SBarry Smith   PetscErrorCode ierr;
55895fce210SBarry Smith   PetscMPIInt    rank;
55995fce210SBarry Smith   PetscInt       i,nroots,nleaves,maxlocal,count,*newilocal;
56095fce210SBarry Smith   const PetscInt *ilocal;
56195fce210SBarry Smith   PetscSFNode    *roots,*leaves;
56295fce210SBarry Smith 
56395fce210SBarry Smith   PetscFunctionBegin;
56429046d53SLisandro Dalcin   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
56529046d53SLisandro Dalcin   PetscSFCheckGraphSet(sf,1);
56629046d53SLisandro Dalcin   PetscValidPointer(isf,2);
56729046d53SLisandro Dalcin 
56895fce210SBarry Smith   ierr = PetscSFGetGraph(sf,&nroots,&nleaves,&ilocal,NULL);CHKERRQ(ierr);
56929046d53SLisandro Dalcin   maxlocal = sf->maxleaf+1; /* TODO: We should use PetscSFGetLeafRange() */
57029046d53SLisandro Dalcin 
57129046d53SLisandro Dalcin   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)sf),&rank);CHKERRQ(ierr);
572ae9aee6dSMatthew G. Knepley   ierr = PetscMalloc2(nroots,&roots,maxlocal,&leaves);CHKERRQ(ierr);
573ae9aee6dSMatthew G. Knepley   for (i=0; i<maxlocal; i++) {
57495fce210SBarry Smith     leaves[i].rank  = rank;
57595fce210SBarry Smith     leaves[i].index = i;
57695fce210SBarry Smith   }
57795fce210SBarry Smith   for (i=0; i <nroots; i++) {
57895fce210SBarry Smith     roots[i].rank  = -1;
57995fce210SBarry Smith     roots[i].index = -1;
58095fce210SBarry Smith   }
5818bfbc91cSJed Brown   ierr = PetscSFReduceBegin(sf,MPIU_2INT,leaves,roots,MPIU_REPLACE);CHKERRQ(ierr);
5828bfbc91cSJed Brown   ierr = PetscSFReduceEnd(sf,MPIU_2INT,leaves,roots,MPIU_REPLACE);CHKERRQ(ierr);
58395fce210SBarry Smith 
58495fce210SBarry Smith   /* Check whether our leaves are sparse */
58595fce210SBarry Smith   for (i=0,count=0; i<nroots; i++) if (roots[i].rank >= 0) count++;
58695fce210SBarry Smith   if (count == nroots) newilocal = NULL;
58795fce210SBarry Smith   else {                        /* Index for sparse leaves and compact "roots" array (which is to become our leaves). */
588785e854fSJed Brown     ierr = PetscMalloc1(count,&newilocal);CHKERRQ(ierr);
58995fce210SBarry Smith     for (i=0,count=0; i<nroots; i++) {
59095fce210SBarry Smith       if (roots[i].rank >= 0) {
59195fce210SBarry Smith         newilocal[count]   = i;
59295fce210SBarry Smith         roots[count].rank  = roots[i].rank;
59395fce210SBarry Smith         roots[count].index = roots[i].index;
59495fce210SBarry Smith         count++;
59595fce210SBarry Smith       }
59695fce210SBarry Smith     }
59795fce210SBarry Smith   }
59895fce210SBarry Smith 
59995fce210SBarry Smith   ierr = PetscSFDuplicate(sf,PETSCSF_DUPLICATE_CONFONLY,isf);CHKERRQ(ierr);
60095fce210SBarry Smith   ierr = PetscSFSetGraph(*isf,maxlocal,count,newilocal,PETSC_OWN_POINTER,roots,PETSC_COPY_VALUES);CHKERRQ(ierr);
60195fce210SBarry Smith   ierr = PetscFree2(roots,leaves);CHKERRQ(ierr);
60295fce210SBarry Smith   PetscFunctionReturn(0);
60395fce210SBarry Smith }
60495fce210SBarry Smith 
60595fce210SBarry Smith /*@
60695fce210SBarry Smith    PetscSFDuplicate - duplicate a PetscSF, optionally preserving rank connectivity and graph
60795fce210SBarry Smith 
60895fce210SBarry Smith    Collective
60995fce210SBarry Smith 
61095fce210SBarry Smith    Input Arguments:
61195fce210SBarry Smith +  sf - communication object to duplicate
61295fce210SBarry Smith -  opt - PETSCSF_DUPLICATE_CONFONLY, PETSCSF_DUPLICATE_RANKS, or PETSCSF_DUPLICATE_GRAPH (see PetscSFDuplicateOption)
61395fce210SBarry Smith 
61495fce210SBarry Smith    Output Arguments:
61595fce210SBarry Smith .  newsf - new communication object
61695fce210SBarry Smith 
61795fce210SBarry Smith    Level: beginner
61895fce210SBarry Smith 
61995fce210SBarry Smith .seealso: PetscSFCreate(), PetscSFSetType(), PetscSFSetGraph()
62095fce210SBarry Smith @*/
62195fce210SBarry Smith PetscErrorCode PetscSFDuplicate(PetscSF sf,PetscSFDuplicateOption opt,PetscSF *newsf)
62295fce210SBarry Smith {
62329046d53SLisandro Dalcin   PetscSFType    type;
62495fce210SBarry Smith   PetscErrorCode ierr;
62595fce210SBarry Smith 
62695fce210SBarry Smith   PetscFunctionBegin;
62729046d53SLisandro Dalcin   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
62829046d53SLisandro Dalcin   PetscValidLogicalCollectiveEnum(sf,opt,2);
62929046d53SLisandro Dalcin   PetscValidPointer(newsf,3);
63095fce210SBarry Smith   ierr = PetscSFCreate(PetscObjectComm((PetscObject)sf),newsf);CHKERRQ(ierr);
63129046d53SLisandro Dalcin   ierr = PetscSFGetType(sf,&type);CHKERRQ(ierr);
63229046d53SLisandro Dalcin   if (type) {ierr = PetscSFSetType(*newsf,type);CHKERRQ(ierr);}
63395fce210SBarry Smith   if (opt == PETSCSF_DUPLICATE_GRAPH) {
634dd5b3ca6SJunchao Zhang     PetscSFCheckGraphSet(sf,1);
635dd5b3ca6SJunchao Zhang     if (sf->pattern == PETSCSF_PATTERN_GENERAL) {
63695fce210SBarry Smith       PetscInt          nroots,nleaves;
63795fce210SBarry Smith       const PetscInt    *ilocal;
63895fce210SBarry Smith       const PetscSFNode *iremote;
63995fce210SBarry Smith       ierr = PetscSFGetGraph(sf,&nroots,&nleaves,&ilocal,&iremote);CHKERRQ(ierr);
64095fce210SBarry Smith       ierr = PetscSFSetGraph(*newsf,nroots,nleaves,ilocal,PETSC_COPY_VALUES,iremote,PETSC_COPY_VALUES);CHKERRQ(ierr);
641dd5b3ca6SJunchao Zhang     } else {
642dd5b3ca6SJunchao Zhang       ierr = PetscSFSetGraphWithPattern(*newsf,sf->map,sf->pattern);CHKERRQ(ierr);
643dd5b3ca6SJunchao Zhang     }
64495fce210SBarry Smith   }
64529046d53SLisandro Dalcin   if (sf->ops->Duplicate) {ierr = (*sf->ops->Duplicate)(sf,opt,*newsf);CHKERRQ(ierr);}
64695fce210SBarry Smith   PetscFunctionReturn(0);
64795fce210SBarry Smith }
64895fce210SBarry Smith 
64995fce210SBarry Smith /*@C
65095fce210SBarry Smith    PetscSFGetGraph - Get the graph specifying a parallel star forest
65195fce210SBarry Smith 
65295fce210SBarry Smith    Not Collective
65395fce210SBarry Smith 
65495fce210SBarry Smith    Input Arguments:
65595fce210SBarry Smith .  sf - star forest
65695fce210SBarry Smith 
65795fce210SBarry Smith    Output Arguments:
65895fce210SBarry Smith +  nroots - number of root vertices on the current process (these are possible targets for other process to attach leaves)
65995fce210SBarry Smith .  nleaves - number of leaf vertices on the current process, each of these references a root on any process
66095fce210SBarry Smith .  ilocal - locations of leaves in leafdata buffers
66195fce210SBarry Smith -  iremote - remote locations of root vertices for each leaf on the current process
66295fce210SBarry Smith 
663373e0d91SLisandro Dalcin    Notes:
664373e0d91SLisandro Dalcin    We are not currently requiring that the graph is set, thus returning nroots=-1 if it has not been set yet
665373e0d91SLisandro Dalcin 
666245d9833Sprj-    When called from Fortran, the returned iremote array is a copy and must be deallocated after use. Consequently, if you
667ca797d7aSLawrence Mitchell    want to update the graph, you must call PetscSFSetGraph after modifying the iremote array.
668ca797d7aSLawrence Mitchell 
66995fce210SBarry Smith    Level: intermediate
67095fce210SBarry Smith 
67195fce210SBarry Smith .seealso: PetscSFCreate(), PetscSFView(), PetscSFSetGraph()
67295fce210SBarry Smith @*/
67395fce210SBarry Smith PetscErrorCode PetscSFGetGraph(PetscSF sf,PetscInt *nroots,PetscInt *nleaves,const PetscInt **ilocal,const PetscSFNode **iremote)
67495fce210SBarry Smith {
675b8dee149SJunchao Zhang   PetscErrorCode ierr;
67695fce210SBarry Smith 
67795fce210SBarry Smith   PetscFunctionBegin;
67895fce210SBarry Smith   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
679b8dee149SJunchao Zhang   if (sf->ops->GetGraph) {
680b8dee149SJunchao Zhang     ierr = (sf->ops->GetGraph)(sf,nroots,nleaves,ilocal,iremote);CHKERRQ(ierr);
681b8dee149SJunchao Zhang   } else {
68295fce210SBarry Smith     if (nroots) *nroots = sf->nroots;
68395fce210SBarry Smith     if (nleaves) *nleaves = sf->nleaves;
68495fce210SBarry Smith     if (ilocal) *ilocal = sf->mine;
68595fce210SBarry Smith     if (iremote) *iremote = sf->remote;
686b8dee149SJunchao Zhang   }
68795fce210SBarry Smith   PetscFunctionReturn(0);
68895fce210SBarry Smith }
68995fce210SBarry Smith 
69029046d53SLisandro Dalcin /*@
69195fce210SBarry Smith    PetscSFGetLeafRange - Get the active leaf ranges
69295fce210SBarry Smith 
69395fce210SBarry Smith    Not Collective
69495fce210SBarry Smith 
69595fce210SBarry Smith    Input Arguments:
69695fce210SBarry Smith .  sf - star forest
69795fce210SBarry Smith 
69895fce210SBarry Smith    Output Arguments:
699dd5b3ca6SJunchao Zhang +  minleaf - minimum active leaf on this process. Return 0 if there are no leaves.
700dd5b3ca6SJunchao Zhang -  maxleaf - maximum active leaf on this process. Return -1 if there are no leaves.
70195fce210SBarry Smith 
70295fce210SBarry Smith    Level: developer
70395fce210SBarry Smith 
70495fce210SBarry Smith .seealso: PetscSFCreate(), PetscSFView(), PetscSFSetGraph(), PetscSFGetGraph()
70595fce210SBarry Smith @*/
70695fce210SBarry Smith PetscErrorCode PetscSFGetLeafRange(PetscSF sf,PetscInt *minleaf,PetscInt *maxleaf)
70795fce210SBarry Smith {
70895fce210SBarry Smith 
70995fce210SBarry Smith   PetscFunctionBegin;
71095fce210SBarry Smith   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
71129046d53SLisandro Dalcin   PetscSFCheckGraphSet(sf,1);
71295fce210SBarry Smith   if (minleaf) *minleaf = sf->minleaf;
71395fce210SBarry Smith   if (maxleaf) *maxleaf = sf->maxleaf;
71495fce210SBarry Smith   PetscFunctionReturn(0);
71595fce210SBarry Smith }
71695fce210SBarry Smith 
71795fce210SBarry Smith /*@C
718fe2efc57SMark    PetscSFViewFromOptions - View from Options
719fe2efc57SMark 
720fe2efc57SMark    Collective on PetscSF
721fe2efc57SMark 
722fe2efc57SMark    Input Parameters:
723fe2efc57SMark +  A - the star forest
724736c3998SJose E. Roman .  obj - Optional object
725736c3998SJose E. Roman -  name - command line option
726fe2efc57SMark 
727fe2efc57SMark    Level: intermediate
728fe2efc57SMark .seealso:  PetscSF, PetscSFView, PetscObjectViewFromOptions(), PetscSFCreate()
729fe2efc57SMark @*/
730fe2efc57SMark PetscErrorCode  PetscSFViewFromOptions(PetscSF A,PetscObject obj,const char name[])
731fe2efc57SMark {
732fe2efc57SMark   PetscErrorCode ierr;
733fe2efc57SMark 
734fe2efc57SMark   PetscFunctionBegin;
735fe2efc57SMark   PetscValidHeaderSpecific(A,PETSCSF_CLASSID,1);
736fe2efc57SMark   ierr = PetscObjectViewFromOptions((PetscObject)A,obj,name);CHKERRQ(ierr);
737fe2efc57SMark   PetscFunctionReturn(0);
738fe2efc57SMark }
739fe2efc57SMark 
740fe2efc57SMark /*@C
74195fce210SBarry Smith    PetscSFView - view a star forest
74295fce210SBarry Smith 
74395fce210SBarry Smith    Collective
74495fce210SBarry Smith 
74595fce210SBarry Smith    Input Arguments:
74695fce210SBarry Smith +  sf - star forest
74795fce210SBarry Smith -  viewer - viewer to display graph, for example PETSC_VIEWER_STDOUT_WORLD
74895fce210SBarry Smith 
74995fce210SBarry Smith    Level: beginner
75095fce210SBarry Smith 
75195fce210SBarry Smith .seealso: PetscSFCreate(), PetscSFSetGraph()
75295fce210SBarry Smith @*/
75395fce210SBarry Smith PetscErrorCode PetscSFView(PetscSF sf,PetscViewer viewer)
75495fce210SBarry Smith {
75595fce210SBarry Smith   PetscErrorCode    ierr;
75695fce210SBarry Smith   PetscBool         iascii;
75795fce210SBarry Smith   PetscViewerFormat format;
75895fce210SBarry Smith 
75995fce210SBarry Smith   PetscFunctionBegin;
76095fce210SBarry Smith   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
76195fce210SBarry Smith   if (!viewer) {ierr = PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject)sf),&viewer);CHKERRQ(ierr);}
76295fce210SBarry Smith   PetscValidHeaderSpecific(viewer,PETSC_VIEWER_CLASSID,2);
76395fce210SBarry Smith   PetscCheckSameComm(sf,1,viewer,2);
76480153354SVaclav Hapla   if (sf->graphset) {ierr = PetscSFSetUp(sf);CHKERRQ(ierr);}
76595fce210SBarry Smith   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
76695fce210SBarry Smith   if (iascii) {
76795fce210SBarry Smith     PetscMPIInt rank;
76881bfa7aaSJed Brown     PetscInt    ii,i,j;
76995fce210SBarry Smith 
770dae58748SBarry Smith     ierr = PetscObjectPrintClassNamePrefixType((PetscObject)sf,viewer);CHKERRQ(ierr);
77195fce210SBarry Smith     ierr = PetscViewerASCIIPushTab(viewer);CHKERRQ(ierr);
77295fce210SBarry Smith     if (sf->ops->View) {ierr = (*sf->ops->View)(sf,viewer);CHKERRQ(ierr);}
773dd5b3ca6SJunchao Zhang     if (sf->pattern == PETSCSF_PATTERN_GENERAL) {
77480153354SVaclav Hapla       if (!sf->graphset) {
77580153354SVaclav Hapla         ierr = PetscViewerASCIIPrintf(viewer,"PetscSFSetGraph() has not been called yet\n");CHKERRQ(ierr);
77680153354SVaclav Hapla         ierr = PetscViewerASCIIPopTab(viewer);CHKERRQ(ierr);
77780153354SVaclav Hapla         PetscFunctionReturn(0);
77880153354SVaclav Hapla       }
77995fce210SBarry Smith       ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)sf),&rank);CHKERRQ(ierr);
7801575c14dSBarry Smith       ierr = PetscViewerASCIIPushSynchronized(viewer);CHKERRQ(ierr);
78195fce210SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Number of roots=%D, leaves=%D, remote ranks=%D\n",rank,sf->nroots,sf->nleaves,sf->nranks);CHKERRQ(ierr);
78295fce210SBarry Smith       for (i=0; i<sf->nleaves; i++) {
78395fce210SBarry Smith         ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] %D <- (%D,%D)\n",rank,sf->mine ? sf->mine[i] : i,sf->remote[i].rank,sf->remote[i].index);CHKERRQ(ierr);
78495fce210SBarry Smith       }
78595fce210SBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
78695fce210SBarry Smith       ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
78795fce210SBarry Smith       if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
78881bfa7aaSJed Brown         PetscMPIInt *tmpranks,*perm;
78981bfa7aaSJed Brown         ierr = PetscMalloc2(sf->nranks,&tmpranks,sf->nranks,&perm);CHKERRQ(ierr);
790580bdb30SBarry Smith         ierr = PetscArraycpy(tmpranks,sf->ranks,sf->nranks);CHKERRQ(ierr);
79181bfa7aaSJed Brown         for (i=0; i<sf->nranks; i++) perm[i] = i;
79281bfa7aaSJed Brown         ierr = PetscSortMPIIntWithArray(sf->nranks,tmpranks,perm);CHKERRQ(ierr);
79395fce210SBarry Smith         ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Roots referenced by my leaves, by rank\n",rank);CHKERRQ(ierr);
79481bfa7aaSJed Brown         for (ii=0; ii<sf->nranks; ii++) {
79581bfa7aaSJed Brown           i = perm[ii];
7967904a332SBarry Smith           ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] %d: %D edges\n",rank,sf->ranks[i],sf->roffset[i+1]-sf->roffset[i]);CHKERRQ(ierr);
79795fce210SBarry Smith           for (j=sf->roffset[i]; j<sf->roffset[i+1]; j++) {
79895fce210SBarry Smith             ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d]    %D <- %D\n",rank,sf->rmine[j],sf->rremote[j]);CHKERRQ(ierr);
79995fce210SBarry Smith           }
80095fce210SBarry Smith         }
80181bfa7aaSJed Brown         ierr = PetscFree2(tmpranks,perm);CHKERRQ(ierr);
80295fce210SBarry Smith       }
80395fce210SBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
8041575c14dSBarry Smith       ierr = PetscViewerASCIIPopSynchronized(viewer);CHKERRQ(ierr);
805dd5b3ca6SJunchao Zhang     }
80695fce210SBarry Smith     ierr = PetscViewerASCIIPopTab(viewer);CHKERRQ(ierr);
80795fce210SBarry Smith   }
80895fce210SBarry Smith   PetscFunctionReturn(0);
80995fce210SBarry Smith }
81095fce210SBarry Smith 
81195fce210SBarry Smith /*@C
812dec1416fSJunchao Zhang    PetscSFGetRootRanks - Get root ranks and number of vertices referenced by leaves on this process
81395fce210SBarry Smith 
81495fce210SBarry Smith    Not Collective
81595fce210SBarry Smith 
81695fce210SBarry Smith    Input Arguments:
81795fce210SBarry Smith .  sf - star forest
81895fce210SBarry Smith 
81995fce210SBarry Smith    Output Arguments:
82095fce210SBarry Smith +  nranks - number of ranks referenced by local part
82195fce210SBarry Smith .  ranks - array of ranks
82295fce210SBarry Smith .  roffset - offset in rmine/rremote for each rank (length nranks+1)
82395fce210SBarry Smith .  rmine - concatenated array holding local indices referencing each remote rank
82495fce210SBarry Smith -  rremote - concatenated array holding remote indices referenced for each remote rank
82595fce210SBarry Smith 
82695fce210SBarry Smith    Level: developer
82795fce210SBarry Smith 
828dec1416fSJunchao Zhang .seealso: PetscSFGetLeafRanks()
82995fce210SBarry Smith @*/
830dec1416fSJunchao Zhang PetscErrorCode PetscSFGetRootRanks(PetscSF sf,PetscInt *nranks,const PetscMPIInt **ranks,const PetscInt **roffset,const PetscInt **rmine,const PetscInt **rremote)
83195fce210SBarry Smith {
832dec1416fSJunchao Zhang   PetscErrorCode ierr;
83395fce210SBarry Smith 
83495fce210SBarry Smith   PetscFunctionBegin;
83595fce210SBarry Smith   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
83629046d53SLisandro Dalcin   if (!sf->setupcalled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Must call PetscSFSetUp() before obtaining ranks");
837dec1416fSJunchao Zhang   if (sf->ops->GetRootRanks) {
838dec1416fSJunchao Zhang     ierr = (sf->ops->GetRootRanks)(sf,nranks,ranks,roffset,rmine,rremote);CHKERRQ(ierr);
839dec1416fSJunchao Zhang   } else {
840dec1416fSJunchao Zhang     /* The generic implementation */
84195fce210SBarry Smith     if (nranks)  *nranks  = sf->nranks;
84295fce210SBarry Smith     if (ranks)   *ranks   = sf->ranks;
84395fce210SBarry Smith     if (roffset) *roffset = sf->roffset;
84495fce210SBarry Smith     if (rmine)   *rmine   = sf->rmine;
84595fce210SBarry Smith     if (rremote) *rremote = sf->rremote;
846dec1416fSJunchao Zhang   }
84795fce210SBarry Smith   PetscFunctionReturn(0);
84895fce210SBarry Smith }
84995fce210SBarry Smith 
8508750ddebSJunchao Zhang /*@C
8518750ddebSJunchao Zhang    PetscSFGetLeafRanks - Get leaf ranks referencing roots on this process
8528750ddebSJunchao Zhang 
8538750ddebSJunchao Zhang    Not Collective
8548750ddebSJunchao Zhang 
8558750ddebSJunchao Zhang    Input Arguments:
8568750ddebSJunchao Zhang .  sf - star forest
8578750ddebSJunchao Zhang 
8588750ddebSJunchao Zhang    Output Arguments:
8598750ddebSJunchao Zhang +  niranks - number of leaf ranks referencing roots on this process
8608750ddebSJunchao Zhang .  iranks - array of ranks
8618750ddebSJunchao Zhang .  ioffset - offset in irootloc for each rank (length niranks+1)
8628750ddebSJunchao Zhang -  irootloc - concatenated array holding local indices of roots referenced by each leaf rank
8638750ddebSJunchao Zhang 
8648750ddebSJunchao Zhang    Level: developer
8658750ddebSJunchao Zhang 
866dec1416fSJunchao Zhang .seealso: PetscSFGetRootRanks()
8678750ddebSJunchao Zhang @*/
8688750ddebSJunchao Zhang PetscErrorCode PetscSFGetLeafRanks(PetscSF sf,PetscInt *niranks,const PetscMPIInt **iranks,const PetscInt **ioffset,const PetscInt **irootloc)
8698750ddebSJunchao Zhang {
8708750ddebSJunchao Zhang   PetscErrorCode ierr;
8718750ddebSJunchao Zhang 
8728750ddebSJunchao Zhang   PetscFunctionBegin;
8738750ddebSJunchao Zhang   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
8748750ddebSJunchao Zhang   if (!sf->setupcalled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Must call PetscSFSetUp() before obtaining ranks");
8758750ddebSJunchao Zhang   if (sf->ops->GetLeafRanks) {
8768750ddebSJunchao Zhang     ierr = (sf->ops->GetLeafRanks)(sf,niranks,iranks,ioffset,irootloc);CHKERRQ(ierr);
8778750ddebSJunchao Zhang   } else {
8788750ddebSJunchao Zhang     PetscSFType type;
8798750ddebSJunchao Zhang     ierr = PetscSFGetType(sf,&type);CHKERRQ(ierr);
8808750ddebSJunchao Zhang     SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"PetscSFGetLeafRanks() is not supported on this StarForest type: %s", type);
8818750ddebSJunchao Zhang   }
8828750ddebSJunchao Zhang   PetscFunctionReturn(0);
8838750ddebSJunchao Zhang }
8848750ddebSJunchao Zhang 
885b5a8e515SJed Brown static PetscBool InList(PetscMPIInt needle,PetscMPIInt n,const PetscMPIInt *list) {
886b5a8e515SJed Brown   PetscInt i;
887b5a8e515SJed Brown   for (i=0; i<n; i++) {
888b5a8e515SJed Brown     if (needle == list[i]) return PETSC_TRUE;
889b5a8e515SJed Brown   }
890b5a8e515SJed Brown   return PETSC_FALSE;
891b5a8e515SJed Brown }
892b5a8e515SJed Brown 
89395fce210SBarry Smith /*@C
89421c688dcSJed Brown    PetscSFSetUpRanks - Set up data structures associated with ranks; this is for internal use by PetscSF implementations.
89521c688dcSJed Brown 
89621c688dcSJed Brown    Collective
89721c688dcSJed Brown 
89821c688dcSJed Brown    Input Arguments:
899b5a8e515SJed Brown +  sf - PetscSF to set up; PetscSFSetGraph() must have been called
900b5a8e515SJed Brown -  dgroup - MPI_Group of ranks to be distinguished (e.g., for self or shared memory exchange)
90121c688dcSJed Brown 
90221c688dcSJed Brown    Level: developer
90321c688dcSJed Brown 
904dec1416fSJunchao Zhang .seealso: PetscSFGetRootRanks()
90521c688dcSJed Brown @*/
906b5a8e515SJed Brown PetscErrorCode PetscSFSetUpRanks(PetscSF sf,MPI_Group dgroup)
90721c688dcSJed Brown {
90821c688dcSJed Brown   PetscErrorCode     ierr;
90921c688dcSJed Brown   PetscTable         table;
91021c688dcSJed Brown   PetscTablePosition pos;
911b5a8e515SJed Brown   PetscMPIInt        size,groupsize,*groupranks;
912247e8311SStefano Zampini   PetscInt           *rcount,*ranks;
913247e8311SStefano Zampini   PetscInt           i, irank = -1,orank = -1;
91421c688dcSJed Brown 
91521c688dcSJed Brown   PetscFunctionBegin;
91621c688dcSJed Brown   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
91729046d53SLisandro Dalcin   PetscSFCheckGraphSet(sf,1);
91821c688dcSJed Brown   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)sf),&size);CHKERRQ(ierr);
91921c688dcSJed Brown   ierr = PetscTableCreate(10,size,&table);CHKERRQ(ierr);
92021c688dcSJed Brown   for (i=0; i<sf->nleaves; i++) {
92121c688dcSJed Brown     /* Log 1-based rank */
92221c688dcSJed Brown     ierr = PetscTableAdd(table,sf->remote[i].rank+1,1,ADD_VALUES);CHKERRQ(ierr);
92321c688dcSJed Brown   }
92421c688dcSJed Brown   ierr = PetscTableGetCount(table,&sf->nranks);CHKERRQ(ierr);
92521c688dcSJed Brown   ierr = PetscMalloc4(sf->nranks,&sf->ranks,sf->nranks+1,&sf->roffset,sf->nleaves,&sf->rmine,sf->nleaves,&sf->rremote);CHKERRQ(ierr);
92621c688dcSJed Brown   ierr = PetscMalloc2(sf->nranks,&rcount,sf->nranks,&ranks);CHKERRQ(ierr);
92721c688dcSJed Brown   ierr = PetscTableGetHeadPosition(table,&pos);CHKERRQ(ierr);
92821c688dcSJed Brown   for (i=0; i<sf->nranks; i++) {
92921c688dcSJed Brown     ierr = PetscTableGetNext(table,&pos,&ranks[i],&rcount[i]);CHKERRQ(ierr);
93021c688dcSJed Brown     ranks[i]--;             /* Convert back to 0-based */
93121c688dcSJed Brown   }
93221c688dcSJed Brown   ierr = PetscTableDestroy(&table);CHKERRQ(ierr);
933b5a8e515SJed Brown 
934b5a8e515SJed Brown   /* We expect that dgroup is reliably "small" while nranks could be large */
935b5a8e515SJed Brown   {
9367fb8a5e4SKarl Rupp     MPI_Group group = MPI_GROUP_NULL;
937b5a8e515SJed Brown     PetscMPIInt *dgroupranks;
938b5a8e515SJed Brown     ierr = MPI_Comm_group(PetscObjectComm((PetscObject)sf),&group);CHKERRQ(ierr);
939b5a8e515SJed Brown     ierr = MPI_Group_size(dgroup,&groupsize);CHKERRQ(ierr);
940b5a8e515SJed Brown     ierr = PetscMalloc1(groupsize,&dgroupranks);CHKERRQ(ierr);
941b5a8e515SJed Brown     ierr = PetscMalloc1(groupsize,&groupranks);CHKERRQ(ierr);
942b5a8e515SJed Brown     for (i=0; i<groupsize; i++) dgroupranks[i] = i;
943f3fc9a17SJed Brown     if (groupsize) {ierr = MPI_Group_translate_ranks(dgroup,groupsize,dgroupranks,group,groupranks);CHKERRQ(ierr);}
944b5a8e515SJed Brown     ierr = MPI_Group_free(&group);CHKERRQ(ierr);
945b5a8e515SJed Brown     ierr = PetscFree(dgroupranks);CHKERRQ(ierr);
946b5a8e515SJed Brown   }
947b5a8e515SJed Brown 
948b5a8e515SJed Brown   /* Partition ranks[] into distinguished (first sf->ndranks) followed by non-distinguished */
949b5a8e515SJed Brown   for (sf->ndranks=0,i=sf->nranks; sf->ndranks<i; ) {
950b5a8e515SJed Brown     for (i--; sf->ndranks<i; i--) { /* Scan i backward looking for distinguished rank */
951b5a8e515SJed Brown       if (InList(ranks[i],groupsize,groupranks)) break;
952b5a8e515SJed Brown     }
953b5a8e515SJed Brown     for ( ; sf->ndranks<=i; sf->ndranks++) { /* Scan sf->ndranks forward looking for non-distinguished rank */
954b5a8e515SJed Brown       if (!InList(ranks[sf->ndranks],groupsize,groupranks)) break;
955b5a8e515SJed Brown     }
956b5a8e515SJed Brown     if (sf->ndranks < i) {                         /* Swap ranks[sf->ndranks] with ranks[i] */
957b5a8e515SJed Brown       PetscInt tmprank,tmpcount;
958247e8311SStefano Zampini 
959b5a8e515SJed Brown       tmprank             = ranks[i];
960b5a8e515SJed Brown       tmpcount            = rcount[i];
961b5a8e515SJed Brown       ranks[i]            = ranks[sf->ndranks];
962b5a8e515SJed Brown       rcount[i]           = rcount[sf->ndranks];
963b5a8e515SJed Brown       ranks[sf->ndranks]  = tmprank;
964b5a8e515SJed Brown       rcount[sf->ndranks] = tmpcount;
965b5a8e515SJed Brown       sf->ndranks++;
966b5a8e515SJed Brown     }
967b5a8e515SJed Brown   }
968b5a8e515SJed Brown   ierr = PetscFree(groupranks);CHKERRQ(ierr);
969b5a8e515SJed Brown   ierr = PetscSortIntWithArray(sf->ndranks,ranks,rcount);CHKERRQ(ierr);
970b5a8e515SJed Brown   ierr = PetscSortIntWithArray(sf->nranks-sf->ndranks,ranks+sf->ndranks,rcount+sf->ndranks);CHKERRQ(ierr);
97121c688dcSJed Brown   sf->roffset[0] = 0;
97221c688dcSJed Brown   for (i=0; i<sf->nranks; i++) {
97321c688dcSJed Brown     ierr = PetscMPIIntCast(ranks[i],sf->ranks+i);CHKERRQ(ierr);
97421c688dcSJed Brown     sf->roffset[i+1] = sf->roffset[i] + rcount[i];
97521c688dcSJed Brown     rcount[i]        = 0;
97621c688dcSJed Brown   }
977247e8311SStefano Zampini   for (i=0, irank = -1, orank = -1; i<sf->nleaves; i++) {
978247e8311SStefano Zampini     /* short circuit */
979247e8311SStefano Zampini     if (orank != sf->remote[i].rank) {
98021c688dcSJed Brown       /* Search for index of iremote[i].rank in sf->ranks */
981b5a8e515SJed Brown       ierr = PetscFindMPIInt(sf->remote[i].rank,sf->ndranks,sf->ranks,&irank);CHKERRQ(ierr);
982b5a8e515SJed Brown       if (irank < 0) {
983b5a8e515SJed Brown         ierr = PetscFindMPIInt(sf->remote[i].rank,sf->nranks-sf->ndranks,sf->ranks+sf->ndranks,&irank);CHKERRQ(ierr);
984b5a8e515SJed Brown         if (irank >= 0) irank += sf->ndranks;
98521c688dcSJed Brown       }
986247e8311SStefano Zampini       orank = sf->remote[i].rank;
987247e8311SStefano Zampini     }
988b5a8e515SJed Brown     if (irank < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Could not find rank %D in array",sf->remote[i].rank);
98921c688dcSJed Brown     sf->rmine[sf->roffset[irank] + rcount[irank]]   = sf->mine ? sf->mine[i] : i;
99021c688dcSJed Brown     sf->rremote[sf->roffset[irank] + rcount[irank]] = sf->remote[i].index;
99121c688dcSJed Brown     rcount[irank]++;
99221c688dcSJed Brown   }
99321c688dcSJed Brown   ierr = PetscFree2(rcount,ranks);CHKERRQ(ierr);
99421c688dcSJed Brown   PetscFunctionReturn(0);
99521c688dcSJed Brown }
99621c688dcSJed Brown 
99721c688dcSJed Brown /*@C
99895fce210SBarry Smith    PetscSFGetGroups - gets incoming and outgoing process groups
99995fce210SBarry Smith 
100095fce210SBarry Smith    Collective
100195fce210SBarry Smith 
100295fce210SBarry Smith    Input Argument:
100395fce210SBarry Smith .  sf - star forest
100495fce210SBarry Smith 
100595fce210SBarry Smith    Output Arguments:
100695fce210SBarry Smith +  incoming - group of origin processes for incoming edges (leaves that reference my roots)
100795fce210SBarry Smith -  outgoing - group of destination processes for outgoing edges (roots that I reference)
100895fce210SBarry Smith 
100995fce210SBarry Smith    Level: developer
101095fce210SBarry Smith 
101195fce210SBarry Smith .seealso: PetscSFGetWindow(), PetscSFRestoreWindow()
101295fce210SBarry Smith @*/
101395fce210SBarry Smith PetscErrorCode PetscSFGetGroups(PetscSF sf,MPI_Group *incoming,MPI_Group *outgoing)
101495fce210SBarry Smith {
101595fce210SBarry Smith   PetscErrorCode ierr;
10167fb8a5e4SKarl Rupp   MPI_Group      group = MPI_GROUP_NULL;
101795fce210SBarry Smith 
101895fce210SBarry Smith   PetscFunctionBegin;
101944ee17edSStefano Zampini   if (sf->nranks < 0) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Must call PetscSFSetUpRanks() before obtaining groups");
102095fce210SBarry Smith   if (sf->ingroup == MPI_GROUP_NULL) {
102195fce210SBarry Smith     PetscInt       i;
102295fce210SBarry Smith     const PetscInt *indegree;
102395fce210SBarry Smith     PetscMPIInt    rank,*outranks,*inranks;
102495fce210SBarry Smith     PetscSFNode    *remote;
102595fce210SBarry Smith     PetscSF        bgcount;
102695fce210SBarry Smith 
102795fce210SBarry Smith     /* Compute the number of incoming ranks */
1028785e854fSJed Brown     ierr = PetscMalloc1(sf->nranks,&remote);CHKERRQ(ierr);
102995fce210SBarry Smith     for (i=0; i<sf->nranks; i++) {
103095fce210SBarry Smith       remote[i].rank  = sf->ranks[i];
103195fce210SBarry Smith       remote[i].index = 0;
103295fce210SBarry Smith     }
103395fce210SBarry Smith     ierr = PetscSFDuplicate(sf,PETSCSF_DUPLICATE_CONFONLY,&bgcount);CHKERRQ(ierr);
103495fce210SBarry Smith     ierr = PetscSFSetGraph(bgcount,1,sf->nranks,NULL,PETSC_COPY_VALUES,remote,PETSC_OWN_POINTER);CHKERRQ(ierr);
103595fce210SBarry Smith     ierr = PetscSFComputeDegreeBegin(bgcount,&indegree);CHKERRQ(ierr);
103695fce210SBarry Smith     ierr = PetscSFComputeDegreeEnd(bgcount,&indegree);CHKERRQ(ierr);
103795fce210SBarry Smith     /* Enumerate the incoming ranks */
1038dcca6d9dSJed Brown     ierr = PetscMalloc2(indegree[0],&inranks,sf->nranks,&outranks);CHKERRQ(ierr);
103995fce210SBarry Smith     ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)sf),&rank);CHKERRQ(ierr);
104095fce210SBarry Smith     for (i=0; i<sf->nranks; i++) outranks[i] = rank;
104195fce210SBarry Smith     ierr = PetscSFGatherBegin(bgcount,MPI_INT,outranks,inranks);CHKERRQ(ierr);
104295fce210SBarry Smith     ierr = PetscSFGatherEnd(bgcount,MPI_INT,outranks,inranks);CHKERRQ(ierr);
104395fce210SBarry Smith     ierr = MPI_Comm_group(PetscObjectComm((PetscObject)sf),&group);CHKERRQ(ierr);
104495fce210SBarry Smith     ierr = MPI_Group_incl(group,indegree[0],inranks,&sf->ingroup);CHKERRQ(ierr);
104595fce210SBarry Smith     ierr = MPI_Group_free(&group);CHKERRQ(ierr);
104695fce210SBarry Smith     ierr = PetscFree2(inranks,outranks);CHKERRQ(ierr);
104795fce210SBarry Smith     ierr = PetscSFDestroy(&bgcount);CHKERRQ(ierr);
104895fce210SBarry Smith   }
104995fce210SBarry Smith   *incoming = sf->ingroup;
105095fce210SBarry Smith 
105195fce210SBarry Smith   if (sf->outgroup == MPI_GROUP_NULL) {
105295fce210SBarry Smith     ierr = MPI_Comm_group(PetscObjectComm((PetscObject)sf),&group);CHKERRQ(ierr);
105395fce210SBarry Smith     ierr = MPI_Group_incl(group,sf->nranks,sf->ranks,&sf->outgroup);CHKERRQ(ierr);
105495fce210SBarry Smith     ierr = MPI_Group_free(&group);CHKERRQ(ierr);
105595fce210SBarry Smith   }
105695fce210SBarry Smith   *outgoing = sf->outgroup;
105795fce210SBarry Smith   PetscFunctionReturn(0);
105895fce210SBarry Smith }
105995fce210SBarry Smith 
106029046d53SLisandro Dalcin /*@
106195fce210SBarry Smith    PetscSFGetMultiSF - gets the inner SF implemeting gathers and scatters
106295fce210SBarry Smith 
106395fce210SBarry Smith    Collective
106495fce210SBarry Smith 
106595fce210SBarry Smith    Input Argument:
106695fce210SBarry Smith .  sf - star forest that may contain roots with 0 or with more than 1 vertex
106795fce210SBarry Smith 
106895fce210SBarry Smith    Output Arguments:
106995fce210SBarry Smith .  multi - star forest with split roots, such that each root has degree exactly 1
107095fce210SBarry Smith 
107195fce210SBarry Smith    Level: developer
107295fce210SBarry Smith 
107395fce210SBarry Smith    Notes:
107495fce210SBarry Smith 
107595fce210SBarry Smith    In most cases, users should use PetscSFGatherBegin() and PetscSFScatterBegin() instead of manipulating multi
107695fce210SBarry Smith    directly. Since multi satisfies the stronger condition that each entry in the global space has exactly one incoming
107795fce210SBarry Smith    edge, it is a candidate for future optimization that might involve its removal.
107895fce210SBarry Smith 
1079673100f5SVaclav Hapla .seealso: PetscSFSetGraph(), PetscSFGatherBegin(), PetscSFScatterBegin(), PetscSFComputeMultiRootOriginalNumbering()
108095fce210SBarry Smith @*/
108195fce210SBarry Smith PetscErrorCode PetscSFGetMultiSF(PetscSF sf,PetscSF *multi)
108295fce210SBarry Smith {
108395fce210SBarry Smith   PetscErrorCode ierr;
108495fce210SBarry Smith 
108595fce210SBarry Smith   PetscFunctionBegin;
108695fce210SBarry Smith   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
108795fce210SBarry Smith   PetscValidPointer(multi,2);
108895fce210SBarry Smith   if (sf->nroots < 0) {         /* Graph has not been set yet; why do we need this? */
108995fce210SBarry Smith     ierr   = PetscSFDuplicate(sf,PETSCSF_DUPLICATE_RANKS,&sf->multi);CHKERRQ(ierr);
109095fce210SBarry Smith     *multi = sf->multi;
109195fce210SBarry Smith     PetscFunctionReturn(0);
109295fce210SBarry Smith   }
109395fce210SBarry Smith   if (!sf->multi) {
109495fce210SBarry Smith     const PetscInt *indegree;
10959837ea96SMatthew G. Knepley     PetscInt       i,*inoffset,*outones,*outoffset,maxlocal;
109695fce210SBarry Smith     PetscSFNode    *remote;
109729046d53SLisandro Dalcin     maxlocal = sf->maxleaf+1; /* TODO: We should use PetscSFGetLeafRange() */
109895fce210SBarry Smith     ierr = PetscSFComputeDegreeBegin(sf,&indegree);CHKERRQ(ierr);
109995fce210SBarry Smith     ierr = PetscSFComputeDegreeEnd(sf,&indegree);CHKERRQ(ierr);
11009837ea96SMatthew G. Knepley     ierr = PetscMalloc3(sf->nroots+1,&inoffset,maxlocal,&outones,maxlocal,&outoffset);CHKERRQ(ierr);
110195fce210SBarry Smith     inoffset[0] = 0;
110295fce210SBarry Smith     for (i=0; i<sf->nroots; i++) inoffset[i+1] = inoffset[i] + indegree[i];
11039837ea96SMatthew G. Knepley     for (i=0; i<maxlocal; i++) outones[i] = 1;
1104dbd2ff41SBarry Smith     ierr = PetscSFFetchAndOpBegin(sf,MPIU_INT,inoffset,outones,outoffset,MPI_SUM);CHKERRQ(ierr);
1105dbd2ff41SBarry Smith     ierr = PetscSFFetchAndOpEnd(sf,MPIU_INT,inoffset,outones,outoffset,MPI_SUM);CHKERRQ(ierr);
110695fce210SBarry Smith     for (i=0; i<sf->nroots; i++) inoffset[i] -= indegree[i]; /* Undo the increment */
110795fce210SBarry Smith #if defined(PETSC_USE_DEBUG)                                 /* Check that the expected number of increments occurred */
110895fce210SBarry Smith     for (i=0; i<sf->nroots; i++) {
110995fce210SBarry Smith       if (inoffset[i] + indegree[i] != inoffset[i+1]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect result after PetscSFFetchAndOp");
111095fce210SBarry Smith     }
111195fce210SBarry Smith #endif
1112785e854fSJed Brown     ierr = PetscMalloc1(sf->nleaves,&remote);CHKERRQ(ierr);
111395fce210SBarry Smith     for (i=0; i<sf->nleaves; i++) {
111495fce210SBarry Smith       remote[i].rank  = sf->remote[i].rank;
111538e7336fSToby Isaac       remote[i].index = outoffset[sf->mine ? sf->mine[i] : i];
111695fce210SBarry Smith     }
111795fce210SBarry Smith     ierr = PetscSFDuplicate(sf,PETSCSF_DUPLICATE_RANKS,&sf->multi);CHKERRQ(ierr);
111801365b40SToby Isaac     ierr = PetscSFSetGraph(sf->multi,inoffset[sf->nroots],sf->nleaves,sf->mine,PETSC_COPY_VALUES,remote,PETSC_OWN_POINTER);CHKERRQ(ierr);
111995fce210SBarry Smith     if (sf->rankorder) {        /* Sort the ranks */
112095fce210SBarry Smith       PetscMPIInt rank;
112195fce210SBarry Smith       PetscInt    *inranks,*newoffset,*outranks,*newoutoffset,*tmpoffset,maxdegree;
112295fce210SBarry Smith       PetscSFNode *newremote;
112395fce210SBarry Smith       ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)sf),&rank);CHKERRQ(ierr);
112495fce210SBarry Smith       for (i=0,maxdegree=0; i<sf->nroots; i++) maxdegree = PetscMax(maxdegree,indegree[i]);
11259837ea96SMatthew G. Knepley       ierr = PetscMalloc5(sf->multi->nroots,&inranks,sf->multi->nroots,&newoffset,maxlocal,&outranks,maxlocal,&newoutoffset,maxdegree,&tmpoffset);CHKERRQ(ierr);
11269837ea96SMatthew G. Knepley       for (i=0; i<maxlocal; i++) outranks[i] = rank;
11278bfbc91cSJed Brown       ierr = PetscSFReduceBegin(sf->multi,MPIU_INT,outranks,inranks,MPIU_REPLACE);CHKERRQ(ierr);
11288bfbc91cSJed Brown       ierr = PetscSFReduceEnd(sf->multi,MPIU_INT,outranks,inranks,MPIU_REPLACE);CHKERRQ(ierr);
112995fce210SBarry Smith       /* Sort the incoming ranks at each vertex, build the inverse map */
113095fce210SBarry Smith       for (i=0; i<sf->nroots; i++) {
113195fce210SBarry Smith         PetscInt j;
113295fce210SBarry Smith         for (j=0; j<indegree[i]; j++) tmpoffset[j] = j;
113395fce210SBarry Smith         ierr = PetscSortIntWithArray(indegree[i],inranks+inoffset[i],tmpoffset);CHKERRQ(ierr);
113495fce210SBarry Smith         for (j=0; j<indegree[i]; j++) newoffset[inoffset[i] + tmpoffset[j]] = inoffset[i] + j;
113595fce210SBarry Smith       }
113695fce210SBarry Smith       ierr = PetscSFBcastBegin(sf->multi,MPIU_INT,newoffset,newoutoffset);CHKERRQ(ierr);
113795fce210SBarry Smith       ierr = PetscSFBcastEnd(sf->multi,MPIU_INT,newoffset,newoutoffset);CHKERRQ(ierr);
1138785e854fSJed Brown       ierr = PetscMalloc1(sf->nleaves,&newremote);CHKERRQ(ierr);
113995fce210SBarry Smith       for (i=0; i<sf->nleaves; i++) {
114095fce210SBarry Smith         newremote[i].rank  = sf->remote[i].rank;
114101365b40SToby Isaac         newremote[i].index = newoutoffset[sf->mine ? sf->mine[i] : i];
114295fce210SBarry Smith       }
114301365b40SToby Isaac       ierr = PetscSFSetGraph(sf->multi,inoffset[sf->nroots],sf->nleaves,sf->mine,PETSC_COPY_VALUES,newremote,PETSC_OWN_POINTER);CHKERRQ(ierr);
114495fce210SBarry Smith       ierr = PetscFree5(inranks,newoffset,outranks,newoutoffset,tmpoffset);CHKERRQ(ierr);
114595fce210SBarry Smith     }
114695fce210SBarry Smith     ierr = PetscFree3(inoffset,outones,outoffset);CHKERRQ(ierr);
114795fce210SBarry Smith   }
114895fce210SBarry Smith   *multi = sf->multi;
114995fce210SBarry Smith   PetscFunctionReturn(0);
115095fce210SBarry Smith }
115195fce210SBarry Smith 
115295fce210SBarry Smith /*@C
115395fce210SBarry Smith    PetscSFCreateEmbeddedSF - removes edges from all but the selected roots, does not remap indices
115495fce210SBarry Smith 
115595fce210SBarry Smith    Collective
115695fce210SBarry Smith 
115795fce210SBarry Smith    Input Arguments:
115895fce210SBarry Smith +  sf - original star forest
1159ba2a7774SJunchao Zhang .  nselected  - number of selected roots on this process
1160ba2a7774SJunchao Zhang -  selected   - indices of the selected roots on this process
116195fce210SBarry Smith 
116295fce210SBarry Smith    Output Arguments:
1163cd620004SJunchao Zhang .  esf - new star forest
116495fce210SBarry Smith 
116595fce210SBarry Smith    Level: advanced
116695fce210SBarry Smith 
116795fce210SBarry Smith    Note:
116895fce210SBarry Smith    To use the new PetscSF, it may be necessary to know the indices of the leaves that are still participating. This can
116995fce210SBarry Smith    be done by calling PetscSFGetGraph().
117095fce210SBarry Smith 
117195fce210SBarry Smith .seealso: PetscSFSetGraph(), PetscSFGetGraph()
117295fce210SBarry Smith @*/
1173cd620004SJunchao Zhang PetscErrorCode PetscSFCreateEmbeddedSF(PetscSF sf,PetscInt nselected,const PetscInt *selected,PetscSF *esf)
117495fce210SBarry Smith {
1175cd620004SJunchao Zhang   PetscInt          i,j,n,nroots,nleaves,esf_nleaves,*new_ilocal,minleaf,maxleaf,maxlocal;
1176cd620004SJunchao Zhang   const PetscInt    *ilocal;
1177cd620004SJunchao Zhang   signed char       *rootdata,*leafdata,*leafmem;
1178ba2a7774SJunchao Zhang   const PetscSFNode *iremote;
1179f659e5c7SJunchao Zhang   PetscSFNode       *new_iremote;
1180f659e5c7SJunchao Zhang   MPI_Comm          comm;
11810511a646SMatthew G. Knepley   PetscErrorCode    ierr;
118295fce210SBarry Smith 
118395fce210SBarry Smith   PetscFunctionBegin;
118495fce210SBarry Smith   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
118529046d53SLisandro Dalcin   PetscSFCheckGraphSet(sf,1);
1186ba2a7774SJunchao Zhang   if (nselected) PetscValidPointer(selected,3);
1187cd620004SJunchao Zhang   PetscValidPointer(esf,4);
11880511a646SMatthew G. Knepley 
1189f659e5c7SJunchao Zhang   ierr = PetscSFSetUp(sf);CHKERRQ(ierr);
1190cd620004SJunchao Zhang 
1191140a1472SStefano Zampini   ierr = PetscLogEventBegin(PETSCSF_EmbedSF,sf,0,0,0);CHKERRQ(ierr);
1192f659e5c7SJunchao Zhang   ierr = PetscObjectGetComm((PetscObject)sf,&comm);CHKERRQ(ierr);
1193cd620004SJunchao Zhang   ierr = PetscSFGetGraph(sf,&nroots,&nleaves,&ilocal,&iremote);CHKERRQ(ierr);
1194cd620004SJunchao Zhang 
1195cd620004SJunchao Zhang #if defined(PETSC_USE_DEBUG)
1196cd620004SJunchao Zhang   /* Error out if selected[] has dups or  out of range indices */
1197cd620004SJunchao Zhang   {
1198cd620004SJunchao Zhang     PetscBool dups;
1199cd620004SJunchao Zhang     ierr = PetscCheckDupsInt(nselected,selected,&dups);CHKERRQ(ierr);
1200cd620004SJunchao Zhang     if (dups) SETERRQ(comm,PETSC_ERR_ARG_WRONG,"selected[] has dups");
1201cd620004SJunchao Zhang     for (i=0; i<nselected; i++)
1202cd620004SJunchao Zhang       if (selected[i] < 0 || selected[i] >= nroots) SETERRQ2(comm,PETSC_ERR_ARG_OUTOFRANGE,"selected root indice %D is out of [0,%D)",selected[i],nroots);
1203cd620004SJunchao Zhang   }
1204cd620004SJunchao Zhang #endif
1205f659e5c7SJunchao Zhang 
1206f659e5c7SJunchao Zhang   if (sf->ops->CreateEmbeddedSF) {
1207cd620004SJunchao Zhang     ierr = (*sf->ops->CreateEmbeddedSF)(sf,nselected,selected,esf);CHKERRQ(ierr);
1208f659e5c7SJunchao Zhang   } else {
1209cd620004SJunchao Zhang     /* A generic version of creating embedded sf */
1210cd620004SJunchao Zhang     ierr = PetscSFGetLeafRange(sf,&minleaf,&maxleaf);CHKERRQ(ierr);
1211cd620004SJunchao Zhang     maxlocal = maxleaf - minleaf + 1;
1212cd620004SJunchao Zhang     ierr = PetscCalloc2(nroots,&rootdata,maxlocal,&leafmem);CHKERRQ(ierr);
1213cd620004SJunchao Zhang     leafdata = leafmem - minleaf;
1214cd620004SJunchao Zhang     /* Tag selected roots and bcast to leaves */
1215cd620004SJunchao Zhang     for (i=0; i<nselected; i++) rootdata[selected[i]] = 1;
1216cd620004SJunchao Zhang     ierr = PetscSFBcastBegin(sf,MPI_SIGNED_CHAR,rootdata,leafdata);CHKERRQ(ierr);
1217cd620004SJunchao Zhang     ierr = PetscSFBcastEnd(sf,MPI_SIGNED_CHAR,rootdata,leafdata);CHKERRQ(ierr);
1218ba2a7774SJunchao Zhang 
1219cd620004SJunchao Zhang     /* Build esf with leaves that are still connected */
1220cd620004SJunchao Zhang     esf_nleaves = 0;
1221cd620004SJunchao Zhang     for (i=0; i<nleaves; i++) {
1222cd620004SJunchao Zhang       j = ilocal ? ilocal[i] : i;
1223cd620004SJunchao Zhang       /* esf_nleaves += leafdata[j] should work in theory, but failed with SFWindow bugs
1224cd620004SJunchao Zhang          with PetscSFBcast. See https://gitlab.com/petsc/petsc/issues/555
1225cd620004SJunchao Zhang       */
1226cd620004SJunchao Zhang       esf_nleaves += (leafdata[j] ? 1 : 0);
1227cd620004SJunchao Zhang     }
1228cd620004SJunchao Zhang     ierr = PetscMalloc1(esf_nleaves,&new_ilocal);CHKERRQ(ierr);
1229cd620004SJunchao Zhang     ierr = PetscMalloc1(esf_nleaves,&new_iremote);CHKERRQ(ierr);
1230cd620004SJunchao Zhang     for (i=n=0; i<nleaves; i++) {
1231cd620004SJunchao Zhang       j = ilocal ? ilocal[i] : i;
1232cd620004SJunchao Zhang       if (leafdata[j]) {
1233cd620004SJunchao Zhang         new_ilocal[n]        = j;
1234cd620004SJunchao Zhang         new_iremote[n].rank  = iremote[i].rank;
1235cd620004SJunchao Zhang         new_iremote[n].index = iremote[i].index;
1236fc1ede2bSMatthew G. Knepley         ++n;
123795fce210SBarry Smith       }
123895fce210SBarry Smith     }
1239cd620004SJunchao Zhang     ierr = PetscSFCreate(comm,esf);CHKERRQ(ierr);
1240cd620004SJunchao Zhang     ierr = PetscSFSetFromOptions(*esf);CHKERRQ(ierr);
1241cd620004SJunchao Zhang     ierr = PetscSFSetGraph(*esf,nroots,esf_nleaves,new_ilocal,PETSC_OWN_POINTER,new_iremote,PETSC_OWN_POINTER);CHKERRQ(ierr);
1242cd620004SJunchao Zhang     ierr = PetscFree2(rootdata,leafmem);CHKERRQ(ierr);
1243f659e5c7SJunchao Zhang   }
1244140a1472SStefano Zampini   ierr = PetscLogEventEnd(PETSCSF_EmbedSF,sf,0,0,0);CHKERRQ(ierr);
124595fce210SBarry Smith   PetscFunctionReturn(0);
124695fce210SBarry Smith }
124795fce210SBarry Smith 
12482f5fb4c2SMatthew G. Knepley /*@C
12492f5fb4c2SMatthew G. Knepley   PetscSFCreateEmbeddedLeafSF - removes edges from all but the selected leaves, does not remap indices
12502f5fb4c2SMatthew G. Knepley 
12512f5fb4c2SMatthew G. Knepley   Collective
12522f5fb4c2SMatthew G. Knepley 
12532f5fb4c2SMatthew G. Knepley   Input Arguments:
12542f5fb4c2SMatthew G. Knepley + sf - original star forest
1255f659e5c7SJunchao Zhang . nselected  - number of selected leaves on this process
1256f659e5c7SJunchao Zhang - selected   - indices of the selected leaves on this process
12572f5fb4c2SMatthew G. Knepley 
12582f5fb4c2SMatthew G. Knepley   Output Arguments:
12592f5fb4c2SMatthew G. Knepley .  newsf - new star forest
12602f5fb4c2SMatthew G. Knepley 
12612f5fb4c2SMatthew G. Knepley   Level: advanced
12622f5fb4c2SMatthew G. Knepley 
12632f5fb4c2SMatthew G. Knepley .seealso: PetscSFCreateEmbeddedSF(), PetscSFSetGraph(), PetscSFGetGraph()
12642f5fb4c2SMatthew G. Knepley @*/
1265f659e5c7SJunchao Zhang PetscErrorCode PetscSFCreateEmbeddedLeafSF(PetscSF sf,PetscInt nselected,const PetscInt *selected,PetscSF *newsf)
12662f5fb4c2SMatthew G. Knepley {
1267f659e5c7SJunchao Zhang   const PetscSFNode *iremote;
1268f659e5c7SJunchao Zhang   PetscSFNode       *new_iremote;
1269f659e5c7SJunchao Zhang   const PetscInt    *ilocal;
1270f659e5c7SJunchao Zhang   PetscInt          i,nroots,*leaves,*new_ilocal;
1271f659e5c7SJunchao Zhang   MPI_Comm          comm;
12722f5fb4c2SMatthew G. Knepley   PetscErrorCode    ierr;
12732f5fb4c2SMatthew G. Knepley 
12742f5fb4c2SMatthew G. Knepley   PetscFunctionBegin;
12752f5fb4c2SMatthew G. Knepley   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
127629046d53SLisandro Dalcin   PetscSFCheckGraphSet(sf,1);
1277f659e5c7SJunchao Zhang   if (nselected) PetscValidPointer(selected,3);
12782f5fb4c2SMatthew G. Knepley   PetscValidPointer(newsf,4);
12792f5fb4c2SMatthew G. Knepley 
1280f659e5c7SJunchao Zhang   /* Uniq selected[] and put results in leaves[] */
1281f659e5c7SJunchao Zhang   ierr = PetscObjectGetComm((PetscObject)sf,&comm);CHKERRQ(ierr);
1282f659e5c7SJunchao Zhang   ierr = PetscMalloc1(nselected,&leaves);CHKERRQ(ierr);
1283dd5b3ca6SJunchao Zhang   ierr = PetscArraycpy(leaves,selected,nselected);CHKERRQ(ierr);
1284f659e5c7SJunchao Zhang   ierr = PetscSortedRemoveDupsInt(&nselected,leaves);CHKERRQ(ierr);
1285f659e5c7SJunchao Zhang   if (nselected && (leaves[0] < 0 || leaves[nselected-1] >= sf->nleaves)) SETERRQ3(comm,PETSC_ERR_ARG_OUTOFRANGE,"Min/Max leaf indices %D/%D are not in [0,%D)",leaves[0],leaves[nselected-1],sf->nleaves);
1286f659e5c7SJunchao Zhang 
1287f659e5c7SJunchao Zhang   /* Optimize the routine only when sf is setup and hence we can reuse sf's communication pattern */
1288f659e5c7SJunchao Zhang   if (sf->setupcalled && sf->ops->CreateEmbeddedLeafSF) {
1289f659e5c7SJunchao Zhang     ierr = (*sf->ops->CreateEmbeddedLeafSF)(sf,nselected,leaves,newsf);CHKERRQ(ierr);
1290f659e5c7SJunchao Zhang   } else {
1291f659e5c7SJunchao Zhang     ierr = PetscSFGetGraph(sf,&nroots,NULL,&ilocal,&iremote);CHKERRQ(ierr);
1292f659e5c7SJunchao Zhang     ierr = PetscMalloc1(nselected,&new_ilocal);CHKERRQ(ierr);
1293f659e5c7SJunchao Zhang     ierr = PetscMalloc1(nselected,&new_iremote);CHKERRQ(ierr);
1294f659e5c7SJunchao Zhang     for (i=0; i<nselected; ++i) {
1295f659e5c7SJunchao Zhang       const PetscInt l     = leaves[i];
1296f659e5c7SJunchao Zhang       new_ilocal[i]        = ilocal ? ilocal[l] : l;
1297f659e5c7SJunchao Zhang       new_iremote[i].rank  = iremote[l].rank;
1298f659e5c7SJunchao Zhang       new_iremote[i].index = iremote[l].index;
12992f5fb4c2SMatthew G. Knepley     }
13004cc19a0cSStefano Zampini     ierr = PetscSFDuplicate(sf,PETSCSF_DUPLICATE_CONFONLY,newsf);CHKERRQ(ierr);
1301f659e5c7SJunchao Zhang     ierr = PetscSFSetGraph(*newsf,nroots,nselected,new_ilocal,PETSC_OWN_POINTER,new_iremote,PETSC_OWN_POINTER);CHKERRQ(ierr);
1302f659e5c7SJunchao Zhang   }
1303f659e5c7SJunchao Zhang   ierr = PetscFree(leaves);CHKERRQ(ierr);
13042f5fb4c2SMatthew G. Knepley   PetscFunctionReturn(0);
13052f5fb4c2SMatthew G. Knepley }
13062f5fb4c2SMatthew G. Knepley 
130795fce210SBarry Smith /*@C
13083482bfa8SJunchao Zhang    PetscSFBcastAndOpBegin - begin pointwise broadcast with root value being reduced to leaf value, to be concluded with call to PetscSFBcastAndOpEnd()
13093482bfa8SJunchao Zhang 
13103482bfa8SJunchao Zhang    Collective on PetscSF
13113482bfa8SJunchao Zhang 
13123482bfa8SJunchao Zhang    Input Arguments:
13133482bfa8SJunchao Zhang +  sf - star forest on which to communicate
13143482bfa8SJunchao Zhang .  unit - data type associated with each node
13153482bfa8SJunchao Zhang .  rootdata - buffer to broadcast
13163482bfa8SJunchao Zhang -  op - operation to use for reduction
13173482bfa8SJunchao Zhang 
13183482bfa8SJunchao Zhang    Output Arguments:
13193482bfa8SJunchao Zhang .  leafdata - buffer to be reduced with values from each leaf's respective root
13203482bfa8SJunchao Zhang 
13213482bfa8SJunchao Zhang    Level: intermediate
13223482bfa8SJunchao Zhang 
13233482bfa8SJunchao Zhang .seealso: PetscSFBcastAndOpEnd(), PetscSFBcastBegin(), PetscSFBcastEnd()
13243482bfa8SJunchao Zhang @*/
13253482bfa8SJunchao Zhang PetscErrorCode PetscSFBcastAndOpBegin(PetscSF sf,MPI_Datatype unit,const void *rootdata,void *leafdata,MPI_Op op)
13263482bfa8SJunchao Zhang {
13273482bfa8SJunchao Zhang   PetscErrorCode ierr;
1328eb02082bSJunchao Zhang   PetscMemType   rootmtype,leafmtype;
13293482bfa8SJunchao Zhang 
13303482bfa8SJunchao Zhang   PetscFunctionBegin;
13313482bfa8SJunchao Zhang   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
13323482bfa8SJunchao Zhang   ierr = PetscSFSetUp(sf);CHKERRQ(ierr);
13333482bfa8SJunchao Zhang   ierr = PetscLogEventBegin(PETSCSF_BcastAndOpBegin,sf,0,0,0);CHKERRQ(ierr);
1334eb02082bSJunchao Zhang   ierr = PetscGetMemType(rootdata,&rootmtype);CHKERRQ(ierr);
1335eb02082bSJunchao Zhang   ierr = PetscGetMemType(leafdata,&leafmtype);CHKERRQ(ierr);
1336eb02082bSJunchao Zhang   ierr = (*sf->ops->BcastAndOpBegin)(sf,unit,rootmtype,rootdata,leafmtype,leafdata,op);CHKERRQ(ierr);
13373482bfa8SJunchao Zhang   ierr = PetscLogEventEnd(PETSCSF_BcastAndOpBegin,sf,0,0,0);CHKERRQ(ierr);
13383482bfa8SJunchao Zhang   PetscFunctionReturn(0);
13393482bfa8SJunchao Zhang }
13403482bfa8SJunchao Zhang 
13413482bfa8SJunchao Zhang /*@C
13423482bfa8SJunchao Zhang    PetscSFBcastAndOpEnd - end a broadcast & reduce operation started with PetscSFBcastAndOpBegin()
13433482bfa8SJunchao Zhang 
13443482bfa8SJunchao Zhang    Collective
13453482bfa8SJunchao Zhang 
13463482bfa8SJunchao Zhang    Input Arguments:
13473482bfa8SJunchao Zhang +  sf - star forest
13483482bfa8SJunchao Zhang .  unit - data type
13493482bfa8SJunchao Zhang .  rootdata - buffer to broadcast
13503482bfa8SJunchao Zhang -  op - operation to use for reduction
13513482bfa8SJunchao Zhang 
13523482bfa8SJunchao Zhang    Output Arguments:
13533482bfa8SJunchao Zhang .  leafdata - buffer to be reduced with values from each leaf's respective root
13543482bfa8SJunchao Zhang 
13553482bfa8SJunchao Zhang    Level: intermediate
13563482bfa8SJunchao Zhang 
13573482bfa8SJunchao Zhang .seealso: PetscSFSetGraph(), PetscSFReduceEnd()
13583482bfa8SJunchao Zhang @*/
13593482bfa8SJunchao Zhang PetscErrorCode PetscSFBcastAndOpEnd(PetscSF sf,MPI_Datatype unit,const void *rootdata,void *leafdata,MPI_Op op)
13603482bfa8SJunchao Zhang {
13613482bfa8SJunchao Zhang   PetscErrorCode ierr;
13623482bfa8SJunchao Zhang 
13633482bfa8SJunchao Zhang   PetscFunctionBegin;
13643482bfa8SJunchao Zhang   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
13653482bfa8SJunchao Zhang   ierr = PetscSFSetUp(sf);CHKERRQ(ierr);
13663482bfa8SJunchao Zhang   ierr = PetscLogEventBegin(PETSCSF_BcastAndOpEnd,sf,0,0,0);CHKERRQ(ierr);
1367*00816365SJunchao Zhang   ierr = (*sf->ops->BcastAndOpEnd)(sf,unit,rootdata,leafdata,op);CHKERRQ(ierr);
13683482bfa8SJunchao Zhang   ierr = PetscLogEventEnd(PETSCSF_BcastAndOpEnd,sf,0,0,0);CHKERRQ(ierr);
13693482bfa8SJunchao Zhang   PetscFunctionReturn(0);
13703482bfa8SJunchao Zhang }
13713482bfa8SJunchao Zhang 
13723482bfa8SJunchao Zhang /*@C
137395fce210SBarry Smith    PetscSFReduceBegin - begin reduction of leafdata into rootdata, to be completed with call to PetscSFReduceEnd()
137495fce210SBarry Smith 
137595fce210SBarry Smith    Collective
137695fce210SBarry Smith 
137795fce210SBarry Smith    Input Arguments:
137895fce210SBarry Smith +  sf - star forest
137995fce210SBarry Smith .  unit - data type
138095fce210SBarry Smith .  leafdata - values to reduce
138195fce210SBarry Smith -  op - reduction operation
138295fce210SBarry Smith 
138395fce210SBarry Smith    Output Arguments:
138495fce210SBarry Smith .  rootdata - result of reduction of values from all leaves of each root
138595fce210SBarry Smith 
138695fce210SBarry Smith    Level: intermediate
138795fce210SBarry Smith 
138895fce210SBarry Smith .seealso: PetscSFBcastBegin()
138995fce210SBarry Smith @*/
139095fce210SBarry Smith PetscErrorCode PetscSFReduceBegin(PetscSF sf,MPI_Datatype unit,const void *leafdata,void *rootdata,MPI_Op op)
139195fce210SBarry Smith {
139295fce210SBarry Smith   PetscErrorCode ierr;
1393eb02082bSJunchao Zhang   PetscMemType   rootmtype,leafmtype;
139495fce210SBarry Smith 
139595fce210SBarry Smith   PetscFunctionBegin;
139695fce210SBarry Smith   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
139795fce210SBarry Smith   ierr = PetscSFSetUp(sf);CHKERRQ(ierr);
139829046d53SLisandro Dalcin   ierr = PetscLogEventBegin(PETSCSF_ReduceBegin,sf,0,0,0);CHKERRQ(ierr);
1399eb02082bSJunchao Zhang   ierr = PetscGetMemType(rootdata,&rootmtype);CHKERRQ(ierr);
1400eb02082bSJunchao Zhang   ierr = PetscGetMemType(leafdata,&leafmtype);CHKERRQ(ierr);
1401eb02082bSJunchao Zhang   ierr = (sf->ops->ReduceBegin)(sf,unit,leafmtype,leafdata,rootmtype,rootdata,op);CHKERRQ(ierr);
1402563ffbabSMatthew G. Knepley   ierr = PetscLogEventEnd(PETSCSF_ReduceBegin,sf,0,0,0);CHKERRQ(ierr);
140395fce210SBarry Smith   PetscFunctionReturn(0);
140495fce210SBarry Smith }
140595fce210SBarry Smith 
140695fce210SBarry Smith /*@C
140795fce210SBarry Smith    PetscSFReduceEnd - end a reduction operation started with PetscSFReduceBegin()
140895fce210SBarry Smith 
140995fce210SBarry Smith    Collective
141095fce210SBarry Smith 
141195fce210SBarry Smith    Input Arguments:
141295fce210SBarry Smith +  sf - star forest
141395fce210SBarry Smith .  unit - data type
141495fce210SBarry Smith .  leafdata - values to reduce
141595fce210SBarry Smith -  op - reduction operation
141695fce210SBarry Smith 
141795fce210SBarry Smith    Output Arguments:
141895fce210SBarry Smith .  rootdata - result of reduction of values from all leaves of each root
141995fce210SBarry Smith 
142095fce210SBarry Smith    Level: intermediate
142195fce210SBarry Smith 
142295fce210SBarry Smith .seealso: PetscSFSetGraph(), PetscSFBcastEnd()
142395fce210SBarry Smith @*/
142495fce210SBarry Smith PetscErrorCode PetscSFReduceEnd(PetscSF sf,MPI_Datatype unit,const void *leafdata,void *rootdata,MPI_Op op)
142595fce210SBarry Smith {
142695fce210SBarry Smith   PetscErrorCode ierr;
142795fce210SBarry Smith 
142895fce210SBarry Smith   PetscFunctionBegin;
142995fce210SBarry Smith   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
143095fce210SBarry Smith   ierr = PetscSFSetUp(sf);CHKERRQ(ierr);
143129046d53SLisandro Dalcin   ierr = PetscLogEventBegin(PETSCSF_ReduceEnd,sf,0,0,0);CHKERRQ(ierr);
1432*00816365SJunchao Zhang   ierr = (*sf->ops->ReduceEnd)(sf,unit,leafdata,rootdata,op);CHKERRQ(ierr);
1433563ffbabSMatthew G. Knepley   ierr = PetscLogEventEnd(PETSCSF_ReduceEnd,sf,0,0,0);CHKERRQ(ierr);
143495fce210SBarry Smith   PetscFunctionReturn(0);
143595fce210SBarry Smith }
143695fce210SBarry Smith 
143795fce210SBarry Smith /*@C
1438a1729e3fSJunchao Zhang    PetscSFFetchAndOpBegin - begin operation that fetches values from root and updates atomically by applying operation using my leaf value, to be completed with PetscSFFetchAndOpEnd()
1439a1729e3fSJunchao Zhang 
1440a1729e3fSJunchao Zhang    Collective
1441a1729e3fSJunchao Zhang 
1442a1729e3fSJunchao Zhang    Input Arguments:
1443a1729e3fSJunchao Zhang +  sf - star forest
1444a1729e3fSJunchao Zhang .  unit - data type
1445a1729e3fSJunchao Zhang .  leafdata - leaf values to use in reduction
1446a1729e3fSJunchao Zhang -  op - operation to use for reduction
1447a1729e3fSJunchao Zhang 
1448a1729e3fSJunchao Zhang    Output Arguments:
1449a1729e3fSJunchao Zhang +  rootdata - root values to be updated, input state is seen by first process to perform an update
1450a1729e3fSJunchao Zhang -  leafupdate - state at each leaf's respective root immediately prior to my atomic update
1451a1729e3fSJunchao Zhang 
1452a1729e3fSJunchao Zhang    Level: advanced
1453a1729e3fSJunchao Zhang 
1454a1729e3fSJunchao Zhang    Note:
1455a1729e3fSJunchao Zhang    The update is only atomic at the granularity provided by the hardware. Different roots referenced by the same process
1456a1729e3fSJunchao Zhang    might be updated in a different order. Furthermore, if a composite type is used for the unit datatype, atomicity is
1457a1729e3fSJunchao Zhang    not guaranteed across the whole vertex. Therefore, this function is mostly only used with primitive types such as
1458a1729e3fSJunchao Zhang    integers.
1459a1729e3fSJunchao Zhang 
1460a1729e3fSJunchao Zhang .seealso: PetscSFComputeDegreeBegin(), PetscSFReduceBegin(), PetscSFSetGraph()
1461a1729e3fSJunchao Zhang @*/
1462a1729e3fSJunchao Zhang PetscErrorCode PetscSFFetchAndOpBegin(PetscSF sf,MPI_Datatype unit,void *rootdata,const void *leafdata,void *leafupdate,MPI_Op op)
1463a1729e3fSJunchao Zhang {
1464a1729e3fSJunchao Zhang   PetscErrorCode ierr;
1465eb02082bSJunchao Zhang   PetscMemType   rootmtype,leafmtype,leafupdatemtype;
1466a1729e3fSJunchao Zhang 
1467a1729e3fSJunchao Zhang   PetscFunctionBegin;
1468a1729e3fSJunchao Zhang   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
1469a1729e3fSJunchao Zhang   ierr = PetscSFSetUp(sf);CHKERRQ(ierr);
1470a1729e3fSJunchao Zhang   ierr = PetscLogEventBegin(PETSCSF_FetchAndOpBegin,sf,0,0,0);CHKERRQ(ierr);
1471eb02082bSJunchao Zhang   ierr = PetscGetMemType(rootdata,&rootmtype);CHKERRQ(ierr);
1472eb02082bSJunchao Zhang   ierr = PetscGetMemType(leafdata,&leafmtype);CHKERRQ(ierr);
1473eb02082bSJunchao Zhang   ierr = PetscGetMemType(leafupdate,&leafupdatemtype);CHKERRQ(ierr);
1474eb02082bSJunchao Zhang   if (leafmtype != leafupdatemtype) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for leafdata and leafupdate in different memory types");
1475eb02082bSJunchao Zhang   ierr = (*sf->ops->FetchAndOpBegin)(sf,unit,rootmtype,rootdata,leafmtype,leafdata,leafupdate,op);CHKERRQ(ierr);
1476a1729e3fSJunchao Zhang   ierr = PetscLogEventEnd(PETSCSF_FetchAndOpBegin,sf,0,0,0);CHKERRQ(ierr);
1477a1729e3fSJunchao Zhang   PetscFunctionReturn(0);
1478a1729e3fSJunchao Zhang }
1479a1729e3fSJunchao Zhang 
1480a1729e3fSJunchao Zhang /*@C
1481a1729e3fSJunchao Zhang    PetscSFFetchAndOpEnd - end operation started in matching call to PetscSFFetchAndOpBegin() to fetch values from roots and update atomically by applying operation using my leaf value
1482a1729e3fSJunchao Zhang 
1483a1729e3fSJunchao Zhang    Collective
1484a1729e3fSJunchao Zhang 
1485a1729e3fSJunchao Zhang    Input Arguments:
1486a1729e3fSJunchao Zhang +  sf - star forest
1487a1729e3fSJunchao Zhang .  unit - data type
1488a1729e3fSJunchao Zhang .  leafdata - leaf values to use in reduction
1489a1729e3fSJunchao Zhang -  op - operation to use for reduction
1490a1729e3fSJunchao Zhang 
1491a1729e3fSJunchao Zhang    Output Arguments:
1492a1729e3fSJunchao Zhang +  rootdata - root values to be updated, input state is seen by first process to perform an update
1493a1729e3fSJunchao Zhang -  leafupdate - state at each leaf's respective root immediately prior to my atomic update
1494a1729e3fSJunchao Zhang 
1495a1729e3fSJunchao Zhang    Level: advanced
1496a1729e3fSJunchao Zhang 
1497a1729e3fSJunchao Zhang .seealso: PetscSFComputeDegreeEnd(), PetscSFReduceEnd(), PetscSFSetGraph()
1498a1729e3fSJunchao Zhang @*/
1499a1729e3fSJunchao Zhang PetscErrorCode PetscSFFetchAndOpEnd(PetscSF sf,MPI_Datatype unit,void *rootdata,const void *leafdata,void *leafupdate,MPI_Op op)
1500a1729e3fSJunchao Zhang {
1501a1729e3fSJunchao Zhang   PetscErrorCode ierr;
1502a1729e3fSJunchao Zhang 
1503a1729e3fSJunchao Zhang   PetscFunctionBegin;
1504a1729e3fSJunchao Zhang   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
1505a1729e3fSJunchao Zhang   ierr = PetscSFSetUp(sf);CHKERRQ(ierr);
1506a1729e3fSJunchao Zhang   ierr = PetscLogEventBegin(PETSCSF_FetchAndOpEnd,sf,0,0,0);CHKERRQ(ierr);
1507*00816365SJunchao Zhang   ierr = (*sf->ops->FetchAndOpEnd)(sf,unit,rootdata,leafdata,leafupdate,op);CHKERRQ(ierr);
1508a1729e3fSJunchao Zhang   ierr = PetscLogEventEnd(PETSCSF_FetchAndOpEnd,sf,0,0,0);CHKERRQ(ierr);
1509a1729e3fSJunchao Zhang   PetscFunctionReturn(0);
1510a1729e3fSJunchao Zhang }
1511a1729e3fSJunchao Zhang 
1512a1729e3fSJunchao Zhang /*@C
151395fce210SBarry Smith    PetscSFComputeDegreeBegin - begin computation of degree for each root vertex, to be completed with PetscSFComputeDegreeEnd()
151495fce210SBarry Smith 
151595fce210SBarry Smith    Collective
151695fce210SBarry Smith 
151795fce210SBarry Smith    Input Arguments:
151895fce210SBarry Smith .  sf - star forest
151995fce210SBarry Smith 
152095fce210SBarry Smith    Output Arguments:
152195fce210SBarry Smith .  degree - degree of each root vertex
152295fce210SBarry Smith 
152395fce210SBarry Smith    Level: advanced
152495fce210SBarry Smith 
1525ffe67aa5SVáclav Hapla    Notes:
1526ffe67aa5SVáclav Hapla    The returned array is owned by PetscSF and automatically freed by PetscSFDestroy(). Hence no need to call PetscFree() on it.
1527ffe67aa5SVáclav Hapla 
152895fce210SBarry Smith .seealso: PetscSFGatherBegin()
152995fce210SBarry Smith @*/
153095fce210SBarry Smith PetscErrorCode PetscSFComputeDegreeBegin(PetscSF sf,const PetscInt **degree)
153195fce210SBarry Smith {
153295fce210SBarry Smith   PetscErrorCode ierr;
153395fce210SBarry Smith 
153495fce210SBarry Smith   PetscFunctionBegin;
153595fce210SBarry Smith   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
153695fce210SBarry Smith   PetscSFCheckGraphSet(sf,1);
153795fce210SBarry Smith   PetscValidPointer(degree,2);
1538803bd9e8SMatthew G. Knepley   if (!sf->degreeknown) {
15395b0d146aSStefano Zampini     PetscInt i, nroots = sf->nroots, maxlocal;
1540803bd9e8SMatthew G. Knepley     if (sf->degree) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Calls to PetscSFComputeDegreeBegin() cannot be nested.");
15415b0d146aSStefano Zampini     maxlocal = sf->maxleaf-sf->minleaf+1;
154229046d53SLisandro Dalcin     ierr = PetscMalloc1(nroots,&sf->degree);CHKERRQ(ierr);
154329046d53SLisandro Dalcin     ierr = PetscMalloc1(PetscMax(maxlocal,1),&sf->degreetmp);CHKERRQ(ierr); /* allocate at least one entry, see check in PetscSFComputeDegreeEnd() */
154429046d53SLisandro Dalcin     for (i=0; i<nroots; i++) sf->degree[i] = 0;
15459837ea96SMatthew G. Knepley     for (i=0; i<maxlocal; i++) sf->degreetmp[i] = 1;
15465b0d146aSStefano Zampini     ierr = PetscSFReduceBegin(sf,MPIU_INT,sf->degreetmp-sf->minleaf,sf->degree,MPI_SUM);CHKERRQ(ierr);
154795fce210SBarry Smith   }
154895fce210SBarry Smith   *degree = NULL;
154995fce210SBarry Smith   PetscFunctionReturn(0);
155095fce210SBarry Smith }
155195fce210SBarry Smith 
155295fce210SBarry Smith /*@C
155395fce210SBarry Smith    PetscSFComputeDegreeEnd - complete computation of degree for each root vertex, started with PetscSFComputeDegreeBegin()
155495fce210SBarry Smith 
155595fce210SBarry Smith    Collective
155695fce210SBarry Smith 
155795fce210SBarry Smith    Input Arguments:
155895fce210SBarry Smith .  sf - star forest
155995fce210SBarry Smith 
156095fce210SBarry Smith    Output Arguments:
156195fce210SBarry Smith .  degree - degree of each root vertex
156295fce210SBarry Smith 
156395fce210SBarry Smith    Level: developer
156495fce210SBarry Smith 
1565ffe67aa5SVáclav Hapla    Notes:
1566ffe67aa5SVáclav Hapla    The returned array is owned by PetscSF and automatically freed by PetscSFDestroy(). Hence no need to call PetscFree() on it.
1567ffe67aa5SVáclav Hapla 
156895fce210SBarry Smith .seealso:
156995fce210SBarry Smith @*/
157095fce210SBarry Smith PetscErrorCode PetscSFComputeDegreeEnd(PetscSF sf,const PetscInt **degree)
157195fce210SBarry Smith {
157295fce210SBarry Smith   PetscErrorCode ierr;
157395fce210SBarry Smith 
157495fce210SBarry Smith   PetscFunctionBegin;
157595fce210SBarry Smith   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
157695fce210SBarry Smith   PetscSFCheckGraphSet(sf,1);
157729046d53SLisandro Dalcin   PetscValidPointer(degree,2);
157895fce210SBarry Smith   if (!sf->degreeknown) {
157929046d53SLisandro Dalcin     if (!sf->degreetmp) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Must call PetscSFComputeDegreeBegin() before PetscSFComputeDegreeEnd()");
15805b0d146aSStefano Zampini     ierr = PetscSFReduceEnd(sf,MPIU_INT,sf->degreetmp-sf->minleaf,sf->degree,MPI_SUM);CHKERRQ(ierr);
158195fce210SBarry Smith     ierr = PetscFree(sf->degreetmp);CHKERRQ(ierr);
158295fce210SBarry Smith     sf->degreeknown = PETSC_TRUE;
158395fce210SBarry Smith   }
158495fce210SBarry Smith   *degree = sf->degree;
158595fce210SBarry Smith   PetscFunctionReturn(0);
158695fce210SBarry Smith }
158795fce210SBarry Smith 
1588673100f5SVaclav Hapla 
1589673100f5SVaclav Hapla /*@C
159066dfcd1aSVaclav Hapla    PetscSFComputeMultiRootOriginalNumbering - Returns original numbering of multi-roots (roots of multi-SF returned by PetscSFGetMultiSF()).
159166dfcd1aSVaclav Hapla    Each multi-root is assigned index of the corresponding original root.
1592673100f5SVaclav Hapla 
1593673100f5SVaclav Hapla    Collective
1594673100f5SVaclav Hapla 
1595673100f5SVaclav Hapla    Input Arguments:
1596673100f5SVaclav Hapla +  sf - star forest
1597673100f5SVaclav Hapla -  degree - degree of each root vertex, computed with PetscSFComputeDegreeBegin()/PetscSFComputeDegreeEnd()
1598673100f5SVaclav Hapla 
1599673100f5SVaclav Hapla    Output Arguments:
160066dfcd1aSVaclav Hapla +  nMultiRoots - (optional) number of multi-roots (roots of multi-SF)
160166dfcd1aSVaclav Hapla -  multiRootsOrigNumbering - original indices of multi-roots; length of this array is nMultiRoots
1602673100f5SVaclav Hapla 
1603673100f5SVaclav Hapla    Level: developer
1604673100f5SVaclav Hapla 
1605ffe67aa5SVáclav Hapla    Notes:
1606ffe67aa5SVáclav Hapla    The returned array multiRootsOrigNumbering is newly allocated and should be destroyed with PetscFree() when no longer needed.
1607ffe67aa5SVáclav Hapla 
1608673100f5SVaclav Hapla .seealso: PetscSFComputeDegreeBegin(), PetscSFComputeDegreeEnd(), PetscSFGetMultiSF()
1609673100f5SVaclav Hapla @*/
161066dfcd1aSVaclav Hapla PetscErrorCode PetscSFComputeMultiRootOriginalNumbering(PetscSF sf, const PetscInt degree[], PetscInt *nMultiRoots, PetscInt *multiRootsOrigNumbering[])
1611673100f5SVaclav Hapla {
1612673100f5SVaclav Hapla   PetscSF             msf;
1613673100f5SVaclav Hapla   PetscInt            i, j, k, nroots, nmroots;
1614673100f5SVaclav Hapla   PetscErrorCode      ierr;
1615673100f5SVaclav Hapla 
1616673100f5SVaclav Hapla   PetscFunctionBegin;
1617673100f5SVaclav Hapla   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
1618673100f5SVaclav Hapla   ierr = PetscSFGetGraph(sf, &nroots, NULL, NULL, NULL);CHKERRQ(ierr);
161929328920SVaclav Hapla   if (nroots) PetscValidIntPointer(degree,2);
162066dfcd1aSVaclav Hapla   if (nMultiRoots) PetscValidIntPointer(nMultiRoots,3);
162166dfcd1aSVaclav Hapla   PetscValidPointer(multiRootsOrigNumbering,4);
1622673100f5SVaclav Hapla   ierr = PetscSFGetMultiSF(sf,&msf);CHKERRQ(ierr);
1623673100f5SVaclav Hapla   ierr = PetscSFGetGraph(msf, &nmroots, NULL, NULL, NULL);CHKERRQ(ierr);
162466dfcd1aSVaclav Hapla   ierr = PetscMalloc1(nmroots, multiRootsOrigNumbering);CHKERRQ(ierr);
1625673100f5SVaclav Hapla   for (i=0,j=0,k=0; i<nroots; i++) {
1626673100f5SVaclav Hapla     if (!degree[i]) continue;
1627673100f5SVaclav Hapla     for (j=0; j<degree[i]; j++,k++) {
162866dfcd1aSVaclav Hapla       (*multiRootsOrigNumbering)[k] = i;
1629673100f5SVaclav Hapla     }
1630673100f5SVaclav Hapla   }
1631673100f5SVaclav Hapla #if defined(PETSC_USE_DEBUG)
1632673100f5SVaclav Hapla   if (PetscUnlikely(k != nmroots)) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"sanity check fail");
1633673100f5SVaclav Hapla #endif
163466dfcd1aSVaclav Hapla   if (nMultiRoots) *nMultiRoots = nmroots;
1635673100f5SVaclav Hapla   PetscFunctionReturn(0);
1636673100f5SVaclav Hapla }
1637673100f5SVaclav Hapla 
163895fce210SBarry Smith /*@C
163995fce210SBarry Smith    PetscSFGatherBegin - begin pointwise gather of all leaves into multi-roots, to be completed with PetscSFGatherEnd()
164095fce210SBarry Smith 
164195fce210SBarry Smith    Collective
164295fce210SBarry Smith 
164395fce210SBarry Smith    Input Arguments:
164495fce210SBarry Smith +  sf - star forest
164595fce210SBarry Smith .  unit - data type
164695fce210SBarry Smith -  leafdata - leaf data to gather to roots
164795fce210SBarry Smith 
164895fce210SBarry Smith    Output Argument:
164995fce210SBarry Smith .  multirootdata - root buffer to gather into, amount of space per root is equal to its degree
165095fce210SBarry Smith 
165195fce210SBarry Smith    Level: intermediate
165295fce210SBarry Smith 
165395fce210SBarry Smith .seealso: PetscSFComputeDegreeBegin(), PetscSFScatterBegin()
165495fce210SBarry Smith @*/
165595fce210SBarry Smith PetscErrorCode PetscSFGatherBegin(PetscSF sf,MPI_Datatype unit,const void *leafdata,void *multirootdata)
165695fce210SBarry Smith {
165795fce210SBarry Smith   PetscErrorCode ierr;
165895fce210SBarry Smith   PetscSF        multi;
165995fce210SBarry Smith 
166095fce210SBarry Smith   PetscFunctionBegin;
166195fce210SBarry Smith   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
166229046d53SLisandro Dalcin   ierr = PetscSFSetUp(sf);CHKERRQ(ierr);
166395fce210SBarry Smith   ierr = PetscSFGetMultiSF(sf,&multi);CHKERRQ(ierr);
16648bfbc91cSJed Brown   ierr = PetscSFReduceBegin(multi,unit,leafdata,multirootdata,MPIU_REPLACE);CHKERRQ(ierr);
166595fce210SBarry Smith   PetscFunctionReturn(0);
166695fce210SBarry Smith }
166795fce210SBarry Smith 
166895fce210SBarry Smith /*@C
166995fce210SBarry Smith    PetscSFGatherEnd - ends pointwise gather operation that was started with PetscSFGatherBegin()
167095fce210SBarry Smith 
167195fce210SBarry Smith    Collective
167295fce210SBarry Smith 
167395fce210SBarry Smith    Input Arguments:
167495fce210SBarry Smith +  sf - star forest
167595fce210SBarry Smith .  unit - data type
167695fce210SBarry Smith -  leafdata - leaf data to gather to roots
167795fce210SBarry Smith 
167895fce210SBarry Smith    Output Argument:
167995fce210SBarry Smith .  multirootdata - root buffer to gather into, amount of space per root is equal to its degree
168095fce210SBarry Smith 
168195fce210SBarry Smith    Level: intermediate
168295fce210SBarry Smith 
168395fce210SBarry Smith .seealso: PetscSFComputeDegreeEnd(), PetscSFScatterEnd()
168495fce210SBarry Smith @*/
168595fce210SBarry Smith PetscErrorCode PetscSFGatherEnd(PetscSF sf,MPI_Datatype unit,const void *leafdata,void *multirootdata)
168695fce210SBarry Smith {
168795fce210SBarry Smith   PetscErrorCode ierr;
168895fce210SBarry Smith   PetscSF        multi;
168995fce210SBarry Smith 
169095fce210SBarry Smith   PetscFunctionBegin;
169195fce210SBarry Smith   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
169295fce210SBarry Smith   ierr = PetscSFSetUp(sf);CHKERRQ(ierr);
169395fce210SBarry Smith   ierr = PetscSFGetMultiSF(sf,&multi);CHKERRQ(ierr);
16948bfbc91cSJed Brown   ierr = PetscSFReduceEnd(multi,unit,leafdata,multirootdata,MPIU_REPLACE);CHKERRQ(ierr);
169595fce210SBarry Smith   PetscFunctionReturn(0);
169695fce210SBarry Smith }
169795fce210SBarry Smith 
169895fce210SBarry Smith /*@C
169995fce210SBarry Smith    PetscSFScatterBegin - begin pointwise scatter operation from multi-roots to leaves, to be completed with PetscSFScatterEnd()
170095fce210SBarry Smith 
170195fce210SBarry Smith    Collective
170295fce210SBarry Smith 
170395fce210SBarry Smith    Input Arguments:
170495fce210SBarry Smith +  sf - star forest
170595fce210SBarry Smith .  unit - data type
170695fce210SBarry Smith -  multirootdata - root buffer to send to each leaf, one unit of data per leaf
170795fce210SBarry Smith 
170895fce210SBarry Smith    Output Argument:
170995fce210SBarry Smith .  leafdata - leaf data to be update with personal data from each respective root
171095fce210SBarry Smith 
171195fce210SBarry Smith    Level: intermediate
171295fce210SBarry Smith 
171395fce210SBarry Smith .seealso: PetscSFComputeDegreeBegin(), PetscSFScatterBegin()
171495fce210SBarry Smith @*/
171595fce210SBarry Smith PetscErrorCode PetscSFScatterBegin(PetscSF sf,MPI_Datatype unit,const void *multirootdata,void *leafdata)
171695fce210SBarry Smith {
171795fce210SBarry Smith   PetscErrorCode ierr;
171895fce210SBarry Smith   PetscSF        multi;
171995fce210SBarry Smith 
172095fce210SBarry Smith   PetscFunctionBegin;
172195fce210SBarry Smith   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
172295fce210SBarry Smith   ierr = PetscSFSetUp(sf);CHKERRQ(ierr);
172395fce210SBarry Smith   ierr = PetscSFGetMultiSF(sf,&multi);CHKERRQ(ierr);
172495fce210SBarry Smith   ierr = PetscSFBcastBegin(multi,unit,multirootdata,leafdata);CHKERRQ(ierr);
172595fce210SBarry Smith   PetscFunctionReturn(0);
172695fce210SBarry Smith }
172795fce210SBarry Smith 
172895fce210SBarry Smith /*@C
172995fce210SBarry Smith    PetscSFScatterEnd - ends pointwise scatter operation that was started with PetscSFScatterBegin()
173095fce210SBarry Smith 
173195fce210SBarry Smith    Collective
173295fce210SBarry Smith 
173395fce210SBarry Smith    Input Arguments:
173495fce210SBarry Smith +  sf - star forest
173595fce210SBarry Smith .  unit - data type
173695fce210SBarry Smith -  multirootdata - root buffer to send to each leaf, one unit of data per leaf
173795fce210SBarry Smith 
173895fce210SBarry Smith    Output Argument:
173995fce210SBarry Smith .  leafdata - leaf data to be update with personal data from each respective root
174095fce210SBarry Smith 
174195fce210SBarry Smith    Level: intermediate
174295fce210SBarry Smith 
174395fce210SBarry Smith .seealso: PetscSFComputeDegreeEnd(), PetscSFScatterEnd()
174495fce210SBarry Smith @*/
174595fce210SBarry Smith PetscErrorCode PetscSFScatterEnd(PetscSF sf,MPI_Datatype unit,const void *multirootdata,void *leafdata)
174695fce210SBarry Smith {
174795fce210SBarry Smith   PetscErrorCode ierr;
174895fce210SBarry Smith   PetscSF        multi;
174995fce210SBarry Smith 
175095fce210SBarry Smith   PetscFunctionBegin;
175195fce210SBarry Smith   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
175295fce210SBarry Smith   ierr = PetscSFSetUp(sf);CHKERRQ(ierr);
175395fce210SBarry Smith   ierr = PetscSFGetMultiSF(sf,&multi);CHKERRQ(ierr);
175495fce210SBarry Smith   ierr = PetscSFBcastEnd(multi,unit,multirootdata,leafdata);CHKERRQ(ierr);
175595fce210SBarry Smith   PetscFunctionReturn(0);
175695fce210SBarry Smith }
1757a7b3aa13SAta Mesgarnejad 
1758a072220fSLawrence Mitchell static PetscErrorCode PetscSFCheckLeavesUnique_Private(PetscSF sf)
1759a072220fSLawrence Mitchell {
1760a072220fSLawrence Mitchell #if defined(PETSC_USE_DEBUG)
1761a072220fSLawrence Mitchell   PetscInt        i, n, nleaves;
1762a072220fSLawrence Mitchell   const PetscInt *ilocal = NULL;
1763a072220fSLawrence Mitchell   PetscHSetI      seen;
1764a072220fSLawrence Mitchell   PetscErrorCode  ierr;
1765a072220fSLawrence Mitchell 
1766a072220fSLawrence Mitchell   PetscFunctionBegin;
1767a072220fSLawrence Mitchell   ierr = PetscSFGetGraph(sf,NULL,&nleaves,&ilocal,NULL);CHKERRQ(ierr);
1768a072220fSLawrence Mitchell   ierr = PetscHSetICreate(&seen);CHKERRQ(ierr);
1769a072220fSLawrence Mitchell   for (i = 0; i < nleaves; i++) {
1770a072220fSLawrence Mitchell     const PetscInt leaf = ilocal ? ilocal[i] : i;
1771a072220fSLawrence Mitchell     ierr = PetscHSetIAdd(seen,leaf);CHKERRQ(ierr);
1772a072220fSLawrence Mitchell   }
1773a072220fSLawrence Mitchell   ierr = PetscHSetIGetSize(seen,&n);CHKERRQ(ierr);
1774a072220fSLawrence Mitchell   if (n != nleaves) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Provided leaves have repeated values: all leaves must be unique");
1775a072220fSLawrence Mitchell   ierr = PetscHSetIDestroy(&seen);CHKERRQ(ierr);
1776a072220fSLawrence Mitchell   PetscFunctionReturn(0);
1777a072220fSLawrence Mitchell #else
1778a072220fSLawrence Mitchell   PetscFunctionBegin;
1779a072220fSLawrence Mitchell   PetscFunctionReturn(0);
1780a072220fSLawrence Mitchell #endif
1781a072220fSLawrence Mitchell }
178254729392SStefano Zampini 
1783a7b3aa13SAta Mesgarnejad /*@
178404c0ada0SJunchao Zhang   PetscSFCompose - Compose a new PetscSF by putting the second SF under the first one in a top (roots) down (leaves) view
1785a7b3aa13SAta Mesgarnejad 
1786a7b3aa13SAta Mesgarnejad   Input Parameters:
178754729392SStefano Zampini + sfA - The first PetscSF
178854729392SStefano Zampini - sfB - The second PetscSF
1789a7b3aa13SAta Mesgarnejad 
1790a7b3aa13SAta Mesgarnejad   Output Parameters:
179154729392SStefano Zampini . sfBA - The composite SF
1792a7b3aa13SAta Mesgarnejad 
1793a7b3aa13SAta Mesgarnejad   Level: developer
1794a7b3aa13SAta Mesgarnejad 
1795a072220fSLawrence Mitchell   Notes:
179654729392SStefano Zampini   Currently, the two SFs must be defined on congruent communicators and they must be true star
179754729392SStefano Zampini   forests, i.e. the same leaf is not connected with different roots.
179854729392SStefano Zampini 
179954729392SStefano Zampini   sfA's leaf space and sfB's root space might be partially overlapped. The composition builds
180054729392SStefano Zampini   a graph with sfA's roots and sfB's leaves only when there is a path between them. Unconnected
180154729392SStefano Zampini   nodes (roots or leaves) are not in sfBA. Doing a Bcast on the new SF is equivalent to doing a
180254729392SStefano Zampini   Bcast on sfA, then a Bcast on sfB, on connected nodes.
1803a072220fSLawrence Mitchell 
180404c0ada0SJunchao Zhang .seealso: PetscSF, PetscSFComposeInverse(), PetscSFGetGraph(), PetscSFSetGraph()
1805a7b3aa13SAta Mesgarnejad @*/
1806a7b3aa13SAta Mesgarnejad PetscErrorCode PetscSFCompose(PetscSF sfA,PetscSF sfB,PetscSF *sfBA)
1807a7b3aa13SAta Mesgarnejad {
180804c0ada0SJunchao Zhang   PetscErrorCode    ierr;
1809a7b3aa13SAta Mesgarnejad   const PetscSFNode *remotePointsA,*remotePointsB;
1810d41018fbSJunchao Zhang   PetscSFNode       *remotePointsBA=NULL,*reorderedRemotePointsA = NULL,*leafdataB;
181154729392SStefano Zampini   const PetscInt    *localPointsA,*localPointsB;
181254729392SStefano Zampini   PetscInt          *localPointsBA;
181354729392SStefano Zampini   PetscInt          i,numRootsA,numLeavesA,numRootsB,numLeavesB,minleaf,maxleaf,numLeavesBA;
181454729392SStefano Zampini   PetscBool         denseB;
1815a7b3aa13SAta Mesgarnejad 
1816a7b3aa13SAta Mesgarnejad   PetscFunctionBegin;
1817a7b3aa13SAta Mesgarnejad   PetscValidHeaderSpecific(sfA,PETSCSF_CLASSID,1);
181829046d53SLisandro Dalcin   PetscSFCheckGraphSet(sfA,1);
181929046d53SLisandro Dalcin   PetscValidHeaderSpecific(sfB,PETSCSF_CLASSID,2);
182029046d53SLisandro Dalcin   PetscSFCheckGraphSet(sfB,2);
182154729392SStefano Zampini   PetscCheckSameComm(sfA,1,sfB,2);
182229046d53SLisandro Dalcin   PetscValidPointer(sfBA,3);
182354729392SStefano Zampini   ierr = PetscSFCheckLeavesUnique_Private(sfA);CHKERRQ(ierr);
182454729392SStefano Zampini   ierr = PetscSFCheckLeavesUnique_Private(sfB);CHKERRQ(ierr);
182554729392SStefano Zampini 
1826a7b3aa13SAta Mesgarnejad   ierr = PetscSFGetGraph(sfA,&numRootsA,&numLeavesA,&localPointsA,&remotePointsA);CHKERRQ(ierr);
1827a7b3aa13SAta Mesgarnejad   ierr = PetscSFGetGraph(sfB,&numRootsB,&numLeavesB,&localPointsB,&remotePointsB);CHKERRQ(ierr);
1828d41018fbSJunchao Zhang   if (localPointsA) {
182954729392SStefano Zampini     ierr = PetscMalloc1(numRootsB,&reorderedRemotePointsA);CHKERRQ(ierr);
183054729392SStefano Zampini     for (i=0; i<numRootsB; i++) {
183154729392SStefano Zampini       reorderedRemotePointsA[i].rank = -1;
183254729392SStefano Zampini       reorderedRemotePointsA[i].index = -1;
183354729392SStefano Zampini     }
183454729392SStefano Zampini     for (i=0; i<numLeavesA; i++) {
183554729392SStefano Zampini       if (localPointsA[i] >= numRootsB) continue;
183654729392SStefano Zampini       reorderedRemotePointsA[localPointsA[i]] = remotePointsA[i];
183754729392SStefano Zampini     }
1838d41018fbSJunchao Zhang     remotePointsA = reorderedRemotePointsA;
1839d41018fbSJunchao Zhang   }
1840d41018fbSJunchao Zhang   ierr = PetscSFGetLeafRange(sfB,&minleaf,&maxleaf);CHKERRQ(ierr);
1841d41018fbSJunchao Zhang   ierr = PetscMalloc1(maxleaf-minleaf+1,&leafdataB);CHKERRQ(ierr);
1842d41018fbSJunchao Zhang   ierr = PetscSFBcastBegin(sfB,MPIU_2INT,remotePointsA,leafdataB-minleaf);CHKERRQ(ierr);
1843d41018fbSJunchao Zhang   ierr = PetscSFBcastEnd(sfB,MPIU_2INT,remotePointsA,leafdataB-minleaf);CHKERRQ(ierr);
1844d41018fbSJunchao Zhang   ierr = PetscFree(reorderedRemotePointsA);CHKERRQ(ierr);
1845d41018fbSJunchao Zhang 
184654729392SStefano Zampini   denseB = (PetscBool)!localPointsB;
184754729392SStefano Zampini   for (i=0,numLeavesBA=0; i<numLeavesB; i++) {
184854729392SStefano Zampini     if (leafdataB[localPointsB ? localPointsB[i]-minleaf : i].rank == -1) denseB = PETSC_FALSE;
184954729392SStefano Zampini     else numLeavesBA++;
185054729392SStefano Zampini   }
185154729392SStefano Zampini   if (denseB) {
1852d41018fbSJunchao Zhang     localPointsBA  = NULL;
1853d41018fbSJunchao Zhang     remotePointsBA = leafdataB;
1854d41018fbSJunchao Zhang   } else {
185554729392SStefano Zampini     ierr = PetscMalloc1(numLeavesBA,&localPointsBA);CHKERRQ(ierr);
185654729392SStefano Zampini     ierr = PetscMalloc1(numLeavesBA,&remotePointsBA);CHKERRQ(ierr);
185754729392SStefano Zampini     for (i=0,numLeavesBA=0; i<numLeavesB; i++) {
185854729392SStefano Zampini       const PetscInt l = localPointsB ? localPointsB[i] : i;
185954729392SStefano Zampini 
186054729392SStefano Zampini       if (leafdataB[l-minleaf].rank == -1) continue;
186154729392SStefano Zampini       remotePointsBA[numLeavesBA] = leafdataB[l-minleaf];
186254729392SStefano Zampini       localPointsBA[numLeavesBA] = l;
186354729392SStefano Zampini       numLeavesBA++;
186454729392SStefano Zampini     }
1865d41018fbSJunchao Zhang     ierr = PetscFree(leafdataB);CHKERRQ(ierr);
1866d41018fbSJunchao Zhang   }
186754729392SStefano Zampini   ierr = PetscSFCreate(PetscObjectComm((PetscObject)sfA),sfBA);CHKERRQ(ierr);
186854729392SStefano Zampini   ierr = PetscSFSetGraph(*sfBA,numRootsA,numLeavesBA,localPointsBA,PETSC_OWN_POINTER,remotePointsBA,PETSC_OWN_POINTER);CHKERRQ(ierr);
1869a7b3aa13SAta Mesgarnejad   PetscFunctionReturn(0);
1870a7b3aa13SAta Mesgarnejad }
18711c6ba672SJunchao Zhang 
187204c0ada0SJunchao Zhang /*@
187354729392SStefano Zampini   PetscSFComposeInverse - Compose a new PetscSF by putting the inverse of the second SF under the first one
187404c0ada0SJunchao Zhang 
187504c0ada0SJunchao Zhang   Input Parameters:
187654729392SStefano Zampini + sfA - The first PetscSF
187754729392SStefano Zampini - sfB - The second PetscSF
187804c0ada0SJunchao Zhang 
187904c0ada0SJunchao Zhang   Output Parameters:
188054729392SStefano Zampini . sfBA - The composite SF.
188104c0ada0SJunchao Zhang 
188204c0ada0SJunchao Zhang   Level: developer
188304c0ada0SJunchao Zhang 
188454729392SStefano Zampini   Notes:
188554729392SStefano Zampini   Currently, the two SFs must be defined on congruent communicators and they must be true star
188654729392SStefano Zampini   forests, i.e. the same leaf is not connected with different roots. Even more, all roots of the
188754729392SStefano Zampini   second SF must have a degree of 1, i.e., no roots have more than one leaf connected.
188854729392SStefano Zampini 
188954729392SStefano Zampini   sfA's leaf space and sfB's leaf space might be partially overlapped. The composition builds
189054729392SStefano Zampini   a graph with sfA's roots and sfB's roots only when there is a path between them. Unconnected
189154729392SStefano Zampini   roots are not in sfBA. Doing a Bcast on the new SF is equivalent to doing a Bcast on sfA, then
189254729392SStefano Zampini   a Reduce on sfB, on connected roots.
189354729392SStefano Zampini 
189454729392SStefano Zampini .seealso: PetscSF, PetscSFCompose(), PetscSFGetGraph(), PetscSFSetGraph(), PetscSFCreateInverseSF()
189504c0ada0SJunchao Zhang @*/
189604c0ada0SJunchao Zhang PetscErrorCode PetscSFComposeInverse(PetscSF sfA,PetscSF sfB,PetscSF *sfBA)
189704c0ada0SJunchao Zhang {
189804c0ada0SJunchao Zhang   PetscErrorCode    ierr;
189904c0ada0SJunchao Zhang   const PetscSFNode *remotePointsA,*remotePointsB;
190004c0ada0SJunchao Zhang   PetscSFNode       *remotePointsBA;
190104c0ada0SJunchao Zhang   const PetscInt    *localPointsA,*localPointsB;
190254729392SStefano Zampini   PetscSFNode       *reorderedRemotePointsA = NULL;
190354729392SStefano Zampini   PetscInt          i,numRootsA,numLeavesA,numLeavesBA,numRootsB,numLeavesB,minleaf,maxleaf,*localPointsBA;
19045b0d146aSStefano Zampini   MPI_Op            op;
19055b0d146aSStefano Zampini #if defined(PETSC_USE_64BIT_INDICES)
19065b0d146aSStefano Zampini   PetscBool         iswin;
19075b0d146aSStefano Zampini #endif
190804c0ada0SJunchao Zhang 
190904c0ada0SJunchao Zhang   PetscFunctionBegin;
191004c0ada0SJunchao Zhang   PetscValidHeaderSpecific(sfA,PETSCSF_CLASSID,1);
191104c0ada0SJunchao Zhang   PetscSFCheckGraphSet(sfA,1);
191204c0ada0SJunchao Zhang   PetscValidHeaderSpecific(sfB,PETSCSF_CLASSID,2);
191304c0ada0SJunchao Zhang   PetscSFCheckGraphSet(sfB,2);
191454729392SStefano Zampini   PetscCheckSameComm(sfA,1,sfB,2);
191504c0ada0SJunchao Zhang   PetscValidPointer(sfBA,3);
191654729392SStefano Zampini   ierr = PetscSFCheckLeavesUnique_Private(sfA);CHKERRQ(ierr);
191754729392SStefano Zampini   ierr = PetscSFCheckLeavesUnique_Private(sfB);CHKERRQ(ierr);
191854729392SStefano Zampini 
191904c0ada0SJunchao Zhang   ierr = PetscSFGetGraph(sfA, &numRootsA, &numLeavesA, &localPointsA, &remotePointsA);CHKERRQ(ierr);
192004c0ada0SJunchao Zhang   ierr = PetscSFGetGraph(sfB, &numRootsB, &numLeavesB, &localPointsB, &remotePointsB);CHKERRQ(ierr);
19215b0d146aSStefano Zampini 
19225b0d146aSStefano Zampini   /* TODO: Check roots of sfB have degree of 1 */
19235b0d146aSStefano Zampini   /* Once we implement it, we can replace the MPI_MAXLOC
19245b0d146aSStefano Zampini      with MPIU_REPLACE. In that case, MPI_MAXLOC and MPIU_REPLACE have the same effect.
19255b0d146aSStefano Zampini      We use MPI_MAXLOC only to have a deterministic output from this routine if
19265b0d146aSStefano Zampini      the root condition is not meet.
19275b0d146aSStefano Zampini    */
19285b0d146aSStefano Zampini   op = MPI_MAXLOC;
19295b0d146aSStefano Zampini #if defined(PETSC_USE_64BIT_INDICES)
19305b0d146aSStefano Zampini   /* we accept a non-deterministic output (if any) with PETSCSFWINDOW, since MPI_MAXLOC cannot operate on MPIU_2INT with MPI_Accumulate */
19315b0d146aSStefano Zampini   ierr = PetscObjectTypeCompare((PetscObject)sfB,PETSCSFWINDOW,&iswin);CHKERRQ(ierr);
19325b0d146aSStefano Zampini   if (iswin) op = MPIU_REPLACE;
19335b0d146aSStefano Zampini #endif
19345b0d146aSStefano Zampini 
193554729392SStefano Zampini   ierr = PetscSFGetLeafRange(sfB, &minleaf, &maxleaf);CHKERRQ(ierr);
193654729392SStefano Zampini   ierr = PetscMalloc1(maxleaf - minleaf + 1,&reorderedRemotePointsA);CHKERRQ(ierr);
193754729392SStefano Zampini   for (i=0; i<maxleaf - minleaf + 1; i++) {
193854729392SStefano Zampini     reorderedRemotePointsA[i].rank = -1;
193954729392SStefano Zampini     reorderedRemotePointsA[i].index = -1;
194054729392SStefano Zampini   }
194154729392SStefano Zampini   if (localPointsA) {
194254729392SStefano Zampini     for (i=0; i<numLeavesA; i++) {
194354729392SStefano Zampini       if (localPointsA[i] > maxleaf || localPointsA[i] < minleaf) continue;
194454729392SStefano Zampini       reorderedRemotePointsA[localPointsA[i] - minleaf] = remotePointsA[i];
194554729392SStefano Zampini     }
194654729392SStefano Zampini   } else {
194754729392SStefano Zampini     for (i=0; i<numLeavesA; i++) {
194854729392SStefano Zampini       if (i > maxleaf || i < minleaf) continue;
194954729392SStefano Zampini       reorderedRemotePointsA[i - minleaf] = remotePointsA[i];
195054729392SStefano Zampini     }
195154729392SStefano Zampini   }
195254729392SStefano Zampini 
195354729392SStefano Zampini   ierr = PetscMalloc1(numRootsB,&localPointsBA);CHKERRQ(ierr);
195404c0ada0SJunchao Zhang   ierr = PetscMalloc1(numRootsB,&remotePointsBA);CHKERRQ(ierr);
195554729392SStefano Zampini   for (i=0; i<numRootsB; i++) {
195654729392SStefano Zampini     remotePointsBA[i].rank = -1;
195754729392SStefano Zampini     remotePointsBA[i].index = -1;
195854729392SStefano Zampini   }
195954729392SStefano Zampini 
19605b0d146aSStefano Zampini   ierr = PetscSFReduceBegin(sfB,MPIU_2INT,reorderedRemotePointsA-minleaf,remotePointsBA,op);CHKERRQ(ierr);
19615b0d146aSStefano Zampini   ierr = PetscSFReduceEnd(sfB,MPIU_2INT,reorderedRemotePointsA-minleaf,remotePointsBA,op);CHKERRQ(ierr);
196254729392SStefano Zampini   ierr = PetscFree(reorderedRemotePointsA);CHKERRQ(ierr);
196354729392SStefano Zampini   for (i=0,numLeavesBA=0; i<numRootsB; i++) {
196454729392SStefano Zampini     if (remotePointsBA[i].rank == -1) continue;
196554729392SStefano Zampini     remotePointsBA[numLeavesBA].rank = remotePointsBA[i].rank;
196654729392SStefano Zampini     remotePointsBA[numLeavesBA].index = remotePointsBA[i].index;
196754729392SStefano Zampini     localPointsBA[numLeavesBA] = i;
196854729392SStefano Zampini     numLeavesBA++;
196954729392SStefano Zampini   }
197054729392SStefano Zampini   ierr = PetscSFCreate(PetscObjectComm((PetscObject)sfA),sfBA);CHKERRQ(ierr);
197154729392SStefano Zampini   ierr = PetscSFSetGraph(*sfBA,numRootsA,numLeavesBA,localPointsBA,PETSC_OWN_POINTER,remotePointsBA,PETSC_OWN_POINTER);CHKERRQ(ierr);
197204c0ada0SJunchao Zhang   PetscFunctionReturn(0);
197304c0ada0SJunchao Zhang }
197404c0ada0SJunchao Zhang 
19751c6ba672SJunchao Zhang /*
19761c6ba672SJunchao Zhang   PetscSFCreateLocalSF_Private - Creates a local PetscSF that only has intra-process edges of the global PetscSF
19771c6ba672SJunchao Zhang 
19781c6ba672SJunchao Zhang   Input Parameters:
19791c6ba672SJunchao Zhang . sf - The global PetscSF
19801c6ba672SJunchao Zhang 
19811c6ba672SJunchao Zhang   Output Parameters:
19821c6ba672SJunchao Zhang . out - The local PetscSF
19831c6ba672SJunchao Zhang  */
19841c6ba672SJunchao Zhang PetscErrorCode PetscSFCreateLocalSF_Private(PetscSF sf,PetscSF *out)
19851c6ba672SJunchao Zhang {
19861c6ba672SJunchao Zhang   MPI_Comm           comm;
19871c6ba672SJunchao Zhang   PetscMPIInt        myrank;
19881c6ba672SJunchao Zhang   const PetscInt     *ilocal;
19891c6ba672SJunchao Zhang   const PetscSFNode  *iremote;
19901c6ba672SJunchao Zhang   PetscInt           i,j,nroots,nleaves,lnleaves,*lilocal;
19911c6ba672SJunchao Zhang   PetscSFNode        *liremote;
19921c6ba672SJunchao Zhang   PetscSF            lsf;
19931c6ba672SJunchao Zhang   PetscErrorCode     ierr;
19941c6ba672SJunchao Zhang 
19951c6ba672SJunchao Zhang   PetscFunctionBegin;
19961c6ba672SJunchao Zhang   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
19971c6ba672SJunchao Zhang   if (sf->ops->CreateLocalSF) {
19981c6ba672SJunchao Zhang     ierr = (*sf->ops->CreateLocalSF)(sf,out);CHKERRQ(ierr);
19991c6ba672SJunchao Zhang   } else {
20001c6ba672SJunchao Zhang     /* Could use PetscSFCreateEmbeddedLeafSF, but since we know the comm is PETSC_COMM_SELF, we can make it fast */
20011c6ba672SJunchao Zhang     ierr = PetscObjectGetComm((PetscObject)sf,&comm);CHKERRQ(ierr);
20021c6ba672SJunchao Zhang     ierr = MPI_Comm_rank(comm,&myrank);CHKERRQ(ierr);
20031c6ba672SJunchao Zhang 
20041c6ba672SJunchao Zhang     /* Find out local edges and build a local SF */
20051c6ba672SJunchao Zhang     ierr = PetscSFGetGraph(sf,&nroots,&nleaves,&ilocal,&iremote);CHKERRQ(ierr);
20061c6ba672SJunchao Zhang     for (i=lnleaves=0; i<nleaves; i++) {if (iremote[i].rank == (PetscInt)myrank) lnleaves++;}
20071c6ba672SJunchao Zhang     ierr = PetscMalloc1(lnleaves,&lilocal);CHKERRQ(ierr);
20081c6ba672SJunchao Zhang     ierr = PetscMalloc1(lnleaves,&liremote);CHKERRQ(ierr);
20091c6ba672SJunchao Zhang 
20101c6ba672SJunchao Zhang     for (i=j=0; i<nleaves; i++) {
20111c6ba672SJunchao Zhang       if (iremote[i].rank == (PetscInt)myrank) {
20121c6ba672SJunchao Zhang         lilocal[j]        = ilocal? ilocal[i] : i; /* ilocal=NULL for contiguous storage */
20131c6ba672SJunchao Zhang         liremote[j].rank  = 0; /* rank in PETSC_COMM_SELF */
20141c6ba672SJunchao Zhang         liremote[j].index = iremote[i].index;
20151c6ba672SJunchao Zhang         j++;
20161c6ba672SJunchao Zhang       }
20171c6ba672SJunchao Zhang     }
20181c6ba672SJunchao Zhang     ierr = PetscSFCreate(PETSC_COMM_SELF,&lsf);CHKERRQ(ierr);
20191c6ba672SJunchao Zhang     ierr = PetscSFSetGraph(lsf,nroots,lnleaves,lilocal,PETSC_OWN_POINTER,liremote,PETSC_OWN_POINTER);CHKERRQ(ierr);
20201c6ba672SJunchao Zhang     ierr = PetscSFSetUp(lsf);CHKERRQ(ierr);
20211c6ba672SJunchao Zhang     *out = lsf;
20221c6ba672SJunchao Zhang   }
20231c6ba672SJunchao Zhang   PetscFunctionReturn(0);
20241c6ba672SJunchao Zhang }
2025dd5b3ca6SJunchao Zhang 
2026dd5b3ca6SJunchao Zhang /* Similar to PetscSFBcast, but only Bcast to leaves on rank 0 */
2027dd5b3ca6SJunchao Zhang PetscErrorCode PetscSFBcastToZero_Private(PetscSF sf,MPI_Datatype unit,const void *rootdata,void *leafdata)
2028dd5b3ca6SJunchao Zhang {
2029dd5b3ca6SJunchao Zhang   PetscErrorCode     ierr;
2030eb02082bSJunchao Zhang   PetscMemType       rootmtype,leafmtype;
2031dd5b3ca6SJunchao Zhang 
2032dd5b3ca6SJunchao Zhang   PetscFunctionBegin;
2033dd5b3ca6SJunchao Zhang   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
2034dd5b3ca6SJunchao Zhang   ierr = PetscSFSetUp(sf);CHKERRQ(ierr);
2035dd5b3ca6SJunchao Zhang   ierr = PetscLogEventBegin(PETSCSF_BcastAndOpBegin,sf,0,0,0);CHKERRQ(ierr);
2036eb02082bSJunchao Zhang   ierr = PetscGetMemType(rootdata,&rootmtype);CHKERRQ(ierr);
2037eb02082bSJunchao Zhang   ierr = PetscGetMemType(leafdata,&leafmtype);CHKERRQ(ierr);
2038dd5b3ca6SJunchao Zhang   if (sf->ops->BcastToZero) {
2039eb02082bSJunchao Zhang     ierr = (*sf->ops->BcastToZero)(sf,unit,rootmtype,rootdata,leafmtype,leafdata);CHKERRQ(ierr);
2040dd5b3ca6SJunchao Zhang   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"PetscSFBcastToZero_Private is not supported on this SF type");
2041dd5b3ca6SJunchao Zhang   ierr = PetscLogEventEnd(PETSCSF_BcastAndOpBegin,sf,0,0,0);CHKERRQ(ierr);
2042dd5b3ca6SJunchao Zhang   PetscFunctionReturn(0);
2043dd5b3ca6SJunchao Zhang }
2044dd5b3ca6SJunchao Zhang 
2045