xref: /petsc/src/vec/is/sf/interface/sf.c (revision 140a147293a25251a9cb594f525bcfe7ceee4ef4)
1af0996ceSBarry Smith #include <petsc/private/sfimpl.h> /*I "petscsf.h" I*/
2c4e6a40aSLawrence Mitchell #include <petsc/private/hashseti.h>
395fce210SBarry Smith #include <petscctable.h>
495fce210SBarry Smith 
595fce210SBarry Smith #if defined(PETSC_USE_DEBUG)
695fce210SBarry Smith #  define PetscSFCheckGraphSet(sf,arg) do {                          \
795fce210SBarry Smith     if (PetscUnlikely(!(sf)->graphset))                              \
8dd5b3ca6SJunchao Zhang       SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Must call PetscSFSetGraph() or PetscSFSetGraphWithPattern() on argument %D \"%s\" before %s()",(arg),#sf,PETSC_FUNCTION_NAME); \
995fce210SBarry Smith   } while (0)
1095fce210SBarry Smith #else
1195fce210SBarry Smith #  define PetscSFCheckGraphSet(sf,arg) do {} while (0)
1295fce210SBarry Smith #endif
1395fce210SBarry Smith 
1495fce210SBarry Smith const char *const PetscSFDuplicateOptions[] = {"CONFONLY","RANKS","GRAPH","PetscSFDuplicateOption","PETSCSF_DUPLICATE_",0};
1595fce210SBarry Smith 
168af6ec1cSBarry Smith /*@
1795fce210SBarry Smith    PetscSFCreate - create a star forest communication context
1895fce210SBarry Smith 
19d083f849SBarry Smith    Collective
2095fce210SBarry Smith 
2195fce210SBarry Smith    Input Arguments:
2295fce210SBarry Smith .  comm - communicator on which the star forest will operate
2395fce210SBarry Smith 
2495fce210SBarry Smith    Output Arguments:
2595fce210SBarry Smith .  sf - new star forest context
2695fce210SBarry Smith 
27dd5b3ca6SJunchao Zhang    Options Database Keys:
28dd5b3ca6SJunchao Zhang +  -sf_type basic     -Use MPI persistent Isend/Irecv for communication (Default)
29dd5b3ca6SJunchao Zhang .  -sf_type window    -Use MPI-3 one-sided window for communication
30dd5b3ca6SJunchao Zhang -  -sf_type neighbor  -Use MPI-3 neighborhood collectives for communication
31dd5b3ca6SJunchao Zhang 
3295fce210SBarry Smith    Level: intermediate
3395fce210SBarry Smith 
34dd5b3ca6SJunchao Zhang    Notes:
35dd5b3ca6SJunchao Zhang    When one knows the communication graph is one of the predefined graph, such as MPI_Alltoall, MPI_Allgatherv,
36dd5b3ca6SJunchao Zhang    MPI_Gatherv, one can create a PetscSF and then set its graph with PetscSFSetGraphWithPattern(). These special
37dd5b3ca6SJunchao Zhang    SFs are optimized and they have better performance than general SFs.
38dd5b3ca6SJunchao Zhang 
39dd5b3ca6SJunchao Zhang .seealso: PetscSFSetGraph(), PetscSFSetGraphWithPattern(), PetscSFDestroy()
4095fce210SBarry Smith @*/
4195fce210SBarry Smith PetscErrorCode PetscSFCreate(MPI_Comm comm,PetscSF *sf)
4295fce210SBarry Smith {
4395fce210SBarry Smith   PetscErrorCode ierr;
4495fce210SBarry Smith   PetscSF        b;
4595fce210SBarry Smith 
4695fce210SBarry Smith   PetscFunctionBegin;
4795fce210SBarry Smith   PetscValidPointer(sf,2);
48607a6623SBarry Smith   ierr = PetscSFInitializePackage();CHKERRQ(ierr);
4995fce210SBarry Smith 
5073107ff1SLisandro Dalcin   ierr = PetscHeaderCreate(b,PETSCSF_CLASSID,"PetscSF","Star Forest","PetscSF",comm,PetscSFDestroy,PetscSFView);CHKERRQ(ierr);
5195fce210SBarry Smith 
5295fce210SBarry Smith   b->nroots    = -1;
5395fce210SBarry Smith   b->nleaves   = -1;
5429046d53SLisandro Dalcin   b->minleaf   = PETSC_MAX_INT;
5529046d53SLisandro Dalcin   b->maxleaf   = PETSC_MIN_INT;
5695fce210SBarry Smith   b->nranks    = -1;
5795fce210SBarry Smith   b->rankorder = PETSC_TRUE;
5895fce210SBarry Smith   b->ingroup   = MPI_GROUP_NULL;
5995fce210SBarry Smith   b->outgroup  = MPI_GROUP_NULL;
6095fce210SBarry Smith   b->graphset  = PETSC_FALSE;
6195fce210SBarry Smith 
6295fce210SBarry Smith   *sf = b;
6395fce210SBarry Smith   PetscFunctionReturn(0);
6495fce210SBarry Smith }
6595fce210SBarry Smith 
6629046d53SLisandro Dalcin /*@
6795fce210SBarry Smith    PetscSFReset - Reset a star forest so that different sizes or neighbors can be used
6895fce210SBarry Smith 
6995fce210SBarry Smith    Collective
7095fce210SBarry Smith 
7195fce210SBarry Smith    Input Arguments:
7295fce210SBarry Smith .  sf - star forest
7395fce210SBarry Smith 
7495fce210SBarry Smith    Level: advanced
7595fce210SBarry Smith 
7695fce210SBarry Smith .seealso: PetscSFCreate(), PetscSFSetGraph(), PetscSFDestroy()
7795fce210SBarry Smith @*/
7895fce210SBarry Smith PetscErrorCode PetscSFReset(PetscSF sf)
7995fce210SBarry Smith {
8095fce210SBarry Smith   PetscErrorCode ierr;
8195fce210SBarry Smith 
8295fce210SBarry Smith   PetscFunctionBegin;
8395fce210SBarry Smith   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
8479715d56SJed Brown   if (sf->ops->Reset) {ierr = (*sf->ops->Reset)(sf);CHKERRQ(ierr);}
8529046d53SLisandro Dalcin   sf->nroots   = -1;
8629046d53SLisandro Dalcin   sf->nleaves  = -1;
8729046d53SLisandro Dalcin   sf->minleaf  = PETSC_MAX_INT;
8829046d53SLisandro Dalcin   sf->maxleaf  = PETSC_MIN_INT;
8995fce210SBarry Smith   sf->mine     = NULL;
9095fce210SBarry Smith   sf->remote   = NULL;
9129046d53SLisandro Dalcin   sf->graphset = PETSC_FALSE;
9229046d53SLisandro Dalcin   ierr = PetscFree(sf->mine_alloc);CHKERRQ(ierr);
9395fce210SBarry Smith   ierr = PetscFree(sf->remote_alloc);CHKERRQ(ierr);
9421c688dcSJed Brown   sf->nranks = -1;
9529046d53SLisandro Dalcin   ierr = PetscFree4(sf->ranks,sf->roffset,sf->rmine,sf->rremote);CHKERRQ(ierr);
96eb02082bSJunchao Zhang #if defined(PETSC_HAVE_CUDA)
97eb02082bSJunchao Zhang   if (sf->rmine_d) {cudaError_t err = cudaFree(sf->rmine_d);CHKERRCUDA(err);sf->rmine_d=NULL;}
98eb02082bSJunchao Zhang #endif
9929046d53SLisandro Dalcin   sf->degreeknown = PETSC_FALSE;
10095fce210SBarry Smith   ierr = PetscFree(sf->degree);CHKERRQ(ierr);
10195fce210SBarry Smith   if (sf->ingroup  != MPI_GROUP_NULL) {ierr = MPI_Group_free(&sf->ingroup);CHKERRQ(ierr);}
10295fce210SBarry Smith   if (sf->outgroup != MPI_GROUP_NULL) {ierr = MPI_Group_free(&sf->outgroup);CHKERRQ(ierr);}
10395fce210SBarry Smith   ierr = PetscSFDestroy(&sf->multi);CHKERRQ(ierr);
104dd5b3ca6SJunchao Zhang   ierr = PetscLayoutDestroy(&sf->map);CHKERRQ(ierr);
10595fce210SBarry Smith   sf->setupcalled = PETSC_FALSE;
10695fce210SBarry Smith   PetscFunctionReturn(0);
10795fce210SBarry Smith }
10895fce210SBarry Smith 
10995fce210SBarry Smith /*@C
11029046d53SLisandro Dalcin    PetscSFSetType - Set the PetscSF communication implementation
11195fce210SBarry Smith 
11295fce210SBarry Smith    Collective on PetscSF
11395fce210SBarry Smith 
11495fce210SBarry Smith    Input Parameters:
11595fce210SBarry Smith +  sf - the PetscSF context
11695fce210SBarry Smith -  type - a known method
11795fce210SBarry Smith 
11895fce210SBarry Smith    Options Database Key:
11995fce210SBarry Smith .  -sf_type <type> - Sets the method; use -help for a list
12095fce210SBarry Smith    of available methods (for instance, window, pt2pt, neighbor)
12195fce210SBarry Smith 
12295fce210SBarry Smith    Notes:
12395fce210SBarry Smith    See "include/petscsf.h" for available methods (for instance)
12495fce210SBarry Smith +    PETSCSFWINDOW - MPI-2/3 one-sided
12595fce210SBarry Smith -    PETSCSFBASIC - basic implementation using MPI-1 two-sided
12695fce210SBarry Smith 
12795fce210SBarry Smith   Level: intermediate
12895fce210SBarry Smith 
12995fce210SBarry Smith .seealso: PetscSFType, PetscSFCreate()
13095fce210SBarry Smith @*/
13195fce210SBarry Smith PetscErrorCode PetscSFSetType(PetscSF sf,PetscSFType type)
13295fce210SBarry Smith {
13395fce210SBarry Smith   PetscErrorCode ierr,(*r)(PetscSF);
13495fce210SBarry Smith   PetscBool      match;
13595fce210SBarry Smith 
13695fce210SBarry Smith   PetscFunctionBegin;
13795fce210SBarry Smith   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
13895fce210SBarry Smith   PetscValidCharPointer(type,2);
13995fce210SBarry Smith 
14095fce210SBarry Smith   ierr = PetscObjectTypeCompare((PetscObject)sf,type,&match);CHKERRQ(ierr);
14195fce210SBarry Smith   if (match) PetscFunctionReturn(0);
14295fce210SBarry Smith 
143adc40e5bSBarry Smith   ierr = PetscFunctionListFind(PetscSFList,type,&r);CHKERRQ(ierr);
14495fce210SBarry Smith   if (!r) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_UNKNOWN_TYPE,"Unable to find requested PetscSF type %s",type);
14529046d53SLisandro Dalcin   /* Destroy the previous PetscSF implementation context */
14629046d53SLisandro Dalcin   if (sf->ops->Destroy) {ierr = (*(sf)->ops->Destroy)(sf);CHKERRQ(ierr);}
14795fce210SBarry Smith   ierr = PetscMemzero(sf->ops,sizeof(*sf->ops));CHKERRQ(ierr);
14895fce210SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)sf,type);CHKERRQ(ierr);
14995fce210SBarry Smith   ierr = (*r)(sf);CHKERRQ(ierr);
15095fce210SBarry Smith   PetscFunctionReturn(0);
15195fce210SBarry Smith }
15295fce210SBarry Smith 
15329046d53SLisandro Dalcin /*@C
15429046d53SLisandro Dalcin   PetscSFGetType - Get the PetscSF communication implementation
15529046d53SLisandro Dalcin 
15629046d53SLisandro Dalcin   Not Collective
15729046d53SLisandro Dalcin 
15829046d53SLisandro Dalcin   Input Parameter:
15929046d53SLisandro Dalcin . sf  - the PetscSF context
16029046d53SLisandro Dalcin 
16129046d53SLisandro Dalcin   Output Parameter:
16229046d53SLisandro Dalcin . type - the PetscSF type name
16329046d53SLisandro Dalcin 
16429046d53SLisandro Dalcin   Level: intermediate
16529046d53SLisandro Dalcin 
16629046d53SLisandro Dalcin .seealso: PetscSFSetType(), PetscSFCreate()
16729046d53SLisandro Dalcin @*/
16829046d53SLisandro Dalcin PetscErrorCode PetscSFGetType(PetscSF sf, PetscSFType *type)
16929046d53SLisandro Dalcin {
17029046d53SLisandro Dalcin   PetscFunctionBegin;
17129046d53SLisandro Dalcin   PetscValidHeaderSpecific(sf, PETSCSF_CLASSID,1);
17229046d53SLisandro Dalcin   PetscValidPointer(type,2);
17329046d53SLisandro Dalcin   *type = ((PetscObject)sf)->type_name;
17429046d53SLisandro Dalcin   PetscFunctionReturn(0);
17529046d53SLisandro Dalcin }
17629046d53SLisandro Dalcin 
177d36d33e4SMatthew G. Knepley /*@
17895fce210SBarry Smith    PetscSFDestroy - destroy star forest
17995fce210SBarry Smith 
18095fce210SBarry Smith    Collective
18195fce210SBarry Smith 
18295fce210SBarry Smith    Input Arguments:
18395fce210SBarry Smith .  sf - address of star forest
18495fce210SBarry Smith 
18595fce210SBarry Smith    Level: intermediate
18695fce210SBarry Smith 
18795fce210SBarry Smith .seealso: PetscSFCreate(), PetscSFReset()
18895fce210SBarry Smith @*/
18995fce210SBarry Smith PetscErrorCode PetscSFDestroy(PetscSF *sf)
19095fce210SBarry Smith {
19195fce210SBarry Smith   PetscErrorCode ierr;
19295fce210SBarry Smith 
19395fce210SBarry Smith   PetscFunctionBegin;
19495fce210SBarry Smith   if (!*sf) PetscFunctionReturn(0);
19595fce210SBarry Smith   PetscValidHeaderSpecific((*sf),PETSCSF_CLASSID,1);
19629046d53SLisandro Dalcin   if (--((PetscObject)(*sf))->refct > 0) {*sf = NULL; PetscFunctionReturn(0);}
19795fce210SBarry Smith   ierr = PetscSFReset(*sf);CHKERRQ(ierr);
19895fce210SBarry Smith   if ((*sf)->ops->Destroy) {ierr = (*(*sf)->ops->Destroy)(*sf);CHKERRQ(ierr);}
19995fce210SBarry Smith   ierr = PetscHeaderDestroy(sf);CHKERRQ(ierr);
20095fce210SBarry Smith   PetscFunctionReturn(0);
20195fce210SBarry Smith }
20295fce210SBarry Smith 
203c4e6a40aSLawrence Mitchell static PetscErrorCode PetscSFCheckGraphValid_Private(PetscSF sf)
204c4e6a40aSLawrence Mitchell {
205c4e6a40aSLawrence Mitchell #if defined(PETSC_USE_DEBUG)
206c4e6a40aSLawrence Mitchell   PetscInt           i, nleaves;
207c4e6a40aSLawrence Mitchell   PetscMPIInt        size;
208c4e6a40aSLawrence Mitchell   const PetscInt    *ilocal;
209c4e6a40aSLawrence Mitchell   const PetscSFNode *iremote;
210c4e6a40aSLawrence Mitchell   PetscErrorCode     ierr;
211c4e6a40aSLawrence Mitchell 
212c4e6a40aSLawrence Mitchell   PetscFunctionBegin;
213c4e6a40aSLawrence Mitchell   if (!sf->graphset) PetscFunctionReturn(0);
214c4e6a40aSLawrence Mitchell   ierr = PetscSFGetGraph(sf,NULL,&nleaves,&ilocal,&iremote);CHKERRQ(ierr);
215c4e6a40aSLawrence Mitchell   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)sf),&size);CHKERRQ(ierr);
216c4e6a40aSLawrence Mitchell   for (i = 0; i < nleaves; i++) {
217c4e6a40aSLawrence Mitchell     const PetscInt rank = iremote[i].rank;
218c4e6a40aSLawrence Mitchell     const PetscInt remote = iremote[i].index;
219c4e6a40aSLawrence Mitchell     const PetscInt leaf = ilocal ? ilocal[i] : i;
220c4e6a40aSLawrence Mitchell     if (rank < 0 || rank >= size) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Provided rank (%D) for remote %D is invalid, should be in [0, %d)",rank,i,size);
221c4e6a40aSLawrence Mitchell     if (remote < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Provided index (%D) for remote %D is invalid, should be >= 0",remote,i);
222c4e6a40aSLawrence Mitchell     if (leaf < 0) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Provided location (%D) for leaf %D is invalid, should be >= 0",leaf,i);
223c4e6a40aSLawrence Mitchell   }
224c4e6a40aSLawrence Mitchell   PetscFunctionReturn(0);
225c4e6a40aSLawrence Mitchell #else
226c4e6a40aSLawrence Mitchell   PetscFunctionBegin;
227c4e6a40aSLawrence Mitchell   PetscFunctionReturn(0);
228c4e6a40aSLawrence Mitchell #endif
229c4e6a40aSLawrence Mitchell }
230c4e6a40aSLawrence Mitchell 
23195fce210SBarry Smith /*@
23295fce210SBarry Smith    PetscSFSetUp - set up communication structures
23395fce210SBarry Smith 
23495fce210SBarry Smith    Collective
23595fce210SBarry Smith 
23695fce210SBarry Smith    Input Arguments:
23795fce210SBarry Smith .  sf - star forest communication object
23895fce210SBarry Smith 
23995fce210SBarry Smith    Level: beginner
24095fce210SBarry Smith 
24195fce210SBarry Smith .seealso: PetscSFSetFromOptions(), PetscSFSetType()
24295fce210SBarry Smith @*/
24395fce210SBarry Smith PetscErrorCode PetscSFSetUp(PetscSF sf)
24495fce210SBarry Smith {
24595fce210SBarry Smith   PetscErrorCode ierr;
24695fce210SBarry Smith 
24795fce210SBarry Smith   PetscFunctionBegin;
24829046d53SLisandro Dalcin   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
24929046d53SLisandro Dalcin   PetscSFCheckGraphSet(sf,1);
25095fce210SBarry Smith   if (sf->setupcalled) PetscFunctionReturn(0);
251c4e6a40aSLawrence Mitchell   ierr = PetscSFCheckGraphValid_Private(sf);CHKERRQ(ierr);
25295fce210SBarry Smith   if (!((PetscObject)sf)->type_name) {ierr = PetscSFSetType(sf,PETSCSFBASIC);CHKERRQ(ierr);}
25329046d53SLisandro Dalcin   ierr = PetscLogEventBegin(PETSCSF_SetUp,sf,0,0,0);CHKERRQ(ierr);
25495fce210SBarry Smith   if (sf->ops->SetUp) {ierr = (*sf->ops->SetUp)(sf);CHKERRQ(ierr);}
25529046d53SLisandro Dalcin   ierr = PetscLogEventEnd(PETSCSF_SetUp,sf,0,0,0);CHKERRQ(ierr);
25695fce210SBarry Smith   sf->setupcalled = PETSC_TRUE;
25795fce210SBarry Smith   PetscFunctionReturn(0);
25895fce210SBarry Smith }
25995fce210SBarry Smith 
2608af6ec1cSBarry Smith /*@
26195fce210SBarry Smith    PetscSFSetFromOptions - set PetscSF options using the options database
26295fce210SBarry Smith 
26395fce210SBarry Smith    Logically Collective
26495fce210SBarry Smith 
26595fce210SBarry Smith    Input Arguments:
26695fce210SBarry Smith .  sf - star forest
26795fce210SBarry Smith 
26895fce210SBarry Smith    Options Database Keys:
26960263706SJed Brown +  -sf_type - implementation type, see PetscSFSetType()
27060263706SJed Brown -  -sf_rank_order - sort composite points for gathers and scatters in rank order, gathers are non-deterministic otherwise
27195fce210SBarry Smith 
27295fce210SBarry Smith    Level: intermediate
27395fce210SBarry Smith 
27495fce210SBarry Smith .seealso: PetscSFWindowSetSyncType()
27595fce210SBarry Smith @*/
27695fce210SBarry Smith PetscErrorCode PetscSFSetFromOptions(PetscSF sf)
27795fce210SBarry Smith {
27895fce210SBarry Smith   PetscSFType    deft;
27995fce210SBarry Smith   char           type[256];
28095fce210SBarry Smith   PetscErrorCode ierr;
28195fce210SBarry Smith   PetscBool      flg;
28295fce210SBarry Smith 
28395fce210SBarry Smith   PetscFunctionBegin;
28495fce210SBarry Smith   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
28595fce210SBarry Smith   ierr = PetscObjectOptionsBegin((PetscObject)sf);CHKERRQ(ierr);
28695fce210SBarry Smith   deft = ((PetscObject)sf)->type_name ? ((PetscObject)sf)->type_name : PETSCSFBASIC;
28729046d53SLisandro Dalcin   ierr = PetscOptionsFList("-sf_type","PetscSF implementation type","PetscSFSetType",PetscSFList,deft,type,sizeof(type),&flg);CHKERRQ(ierr);
28895fce210SBarry Smith   ierr = PetscSFSetType(sf,flg ? type : deft);CHKERRQ(ierr);
28995fce210SBarry Smith   ierr = PetscOptionsBool("-sf_rank_order","sort composite points for gathers and scatters in rank order, gathers are non-deterministic otherwise","PetscSFSetRankOrder",sf->rankorder,&sf->rankorder,NULL);CHKERRQ(ierr);
290e55864a3SBarry Smith   if (sf->ops->SetFromOptions) {ierr = (*sf->ops->SetFromOptions)(PetscOptionsObject,sf);CHKERRQ(ierr);}
29195fce210SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
29295fce210SBarry Smith   PetscFunctionReturn(0);
29395fce210SBarry Smith }
29495fce210SBarry Smith 
29529046d53SLisandro Dalcin /*@
29695fce210SBarry Smith    PetscSFSetRankOrder - sort multi-points for gathers and scatters by rank order
29795fce210SBarry Smith 
29895fce210SBarry Smith    Logically Collective
29995fce210SBarry Smith 
30095fce210SBarry Smith    Input Arguments:
30195fce210SBarry Smith +  sf - star forest
30295fce210SBarry Smith -  flg - PETSC_TRUE to sort, PETSC_FALSE to skip sorting (lower setup cost, but non-deterministic)
30395fce210SBarry Smith 
30495fce210SBarry Smith    Level: advanced
30595fce210SBarry Smith 
30695fce210SBarry Smith .seealso: PetscSFGatherBegin(), PetscSFScatterBegin()
30795fce210SBarry Smith @*/
30895fce210SBarry Smith PetscErrorCode PetscSFSetRankOrder(PetscSF sf,PetscBool flg)
30995fce210SBarry Smith {
31095fce210SBarry Smith 
31195fce210SBarry Smith   PetscFunctionBegin;
31295fce210SBarry Smith   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
31395fce210SBarry Smith   PetscValidLogicalCollectiveBool(sf,flg,2);
31495fce210SBarry Smith   if (sf->multi) SETERRQ(PetscObjectComm((PetscObject)sf),PETSC_ERR_ARG_WRONGSTATE,"Rank ordering must be set before first call to PetscSFGatherBegin() or PetscSFScatterBegin()");
31595fce210SBarry Smith   sf->rankorder = flg;
31695fce210SBarry Smith   PetscFunctionReturn(0);
31795fce210SBarry Smith }
31895fce210SBarry Smith 
3198af6ec1cSBarry Smith /*@
32095fce210SBarry Smith    PetscSFSetGraph - Set a parallel star forest
32195fce210SBarry Smith 
32295fce210SBarry Smith    Collective
32395fce210SBarry Smith 
32495fce210SBarry Smith    Input Arguments:
32595fce210SBarry Smith +  sf - star forest
32695fce210SBarry Smith .  nroots - number of root vertices on the current process (these are possible targets for other process to attach leaves)
32795fce210SBarry Smith .  nleaves - number of leaf vertices on the current process, each of these references a root on any process
328c4e6a40aSLawrence Mitchell .  ilocal - locations of leaves in leafdata buffers, pass NULL for contiguous storage (locations must be >= 0, enforced
329c4e6a40aSLawrence Mitchell during setup in debug mode)
33095fce210SBarry Smith .  localmode - copy mode for ilocal
331c4e6a40aSLawrence Mitchell .  iremote - remote locations of root vertices for each leaf on the current process (locations must be >= 0, enforced
332c4e6a40aSLawrence Mitchell during setup in debug mode)
33395fce210SBarry Smith -  remotemode - copy mode for iremote
33495fce210SBarry Smith 
33595fce210SBarry Smith    Level: intermediate
33695fce210SBarry Smith 
33795452b02SPatrick Sanan    Notes:
33895452b02SPatrick Sanan     In Fortran you must use PETSC_COPY_VALUES for localmode and remotemode
33938ab3f8aSBarry Smith 
3402ad1e87fSLisandro Dalcin    Developers Note: Local indices which are the identity permutation in the range [0,nleaves) are discarded as they
3412ad1e87fSLisandro Dalcin    encode contiguous storage. In such case, if localmode is PETSC_OWN_POINTER, the memory is deallocated as it is not
3422ad1e87fSLisandro Dalcin    needed
3432ad1e87fSLisandro Dalcin 
344c4e6a40aSLawrence Mitchell    Developers Note: This object does not necessarily encode a true star forest in the graph theoretic sense, since leaf
345c4e6a40aSLawrence Mitchell    indices are not required to be unique. Some functions, however, rely on unique leaf indices (checked in debug mode).
346c4e6a40aSLawrence Mitchell 
34795fce210SBarry Smith .seealso: PetscSFCreate(), PetscSFView(), PetscSFGetGraph()
34895fce210SBarry Smith @*/
34995fce210SBarry Smith PetscErrorCode PetscSFSetGraph(PetscSF sf,PetscInt nroots,PetscInt nleaves,const PetscInt *ilocal,PetscCopyMode localmode,const PetscSFNode *iremote,PetscCopyMode remotemode)
35095fce210SBarry Smith {
35195fce210SBarry Smith   PetscErrorCode ierr;
35295fce210SBarry Smith 
35395fce210SBarry Smith   PetscFunctionBegin;
35495fce210SBarry Smith   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
35529046d53SLisandro Dalcin   if (nleaves > 0 && ilocal) PetscValidIntPointer(ilocal,4);
35629046d53SLisandro Dalcin   if (nleaves > 0) PetscValidPointer(iremote,6);
35729046d53SLisandro Dalcin   if (nroots  < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"nroots %D, cannot be negative",nroots);
35895fce210SBarry Smith   if (nleaves < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"nleaves %D, cannot be negative",nleaves);
35929046d53SLisandro Dalcin 
36095fce210SBarry Smith   ierr = PetscSFReset(sf);CHKERRQ(ierr);
36129046d53SLisandro Dalcin   ierr = PetscLogEventBegin(PETSCSF_SetGraph,sf,0,0,0);CHKERRQ(ierr);
36229046d53SLisandro Dalcin 
36395fce210SBarry Smith   sf->nroots  = nroots;
36495fce210SBarry Smith   sf->nleaves = nleaves;
36529046d53SLisandro Dalcin 
36629046d53SLisandro Dalcin   if (nleaves && ilocal) {
36721c688dcSJed Brown     PetscInt i;
36829046d53SLisandro Dalcin     PetscInt minleaf = PETSC_MAX_INT;
36929046d53SLisandro Dalcin     PetscInt maxleaf = PETSC_MIN_INT;
3702ad1e87fSLisandro Dalcin     int      contiguous = 1;
37129046d53SLisandro Dalcin     for (i=0; i<nleaves; i++) {
37229046d53SLisandro Dalcin       minleaf = PetscMin(minleaf,ilocal[i]);
37329046d53SLisandro Dalcin       maxleaf = PetscMax(maxleaf,ilocal[i]);
3742ad1e87fSLisandro Dalcin       contiguous &= (ilocal[i] == i);
37529046d53SLisandro Dalcin     }
37629046d53SLisandro Dalcin     sf->minleaf = minleaf;
37729046d53SLisandro Dalcin     sf->maxleaf = maxleaf;
3782ad1e87fSLisandro Dalcin     if (contiguous) {
3792ad1e87fSLisandro Dalcin       if (localmode == PETSC_OWN_POINTER) {
3802ad1e87fSLisandro Dalcin         ierr = PetscFree(ilocal);CHKERRQ(ierr);
3812ad1e87fSLisandro Dalcin       }
3822ad1e87fSLisandro Dalcin       ilocal = NULL;
3832ad1e87fSLisandro Dalcin     }
38429046d53SLisandro Dalcin   } else {
38529046d53SLisandro Dalcin     sf->minleaf = 0;
38629046d53SLisandro Dalcin     sf->maxleaf = nleaves - 1;
38729046d53SLisandro Dalcin   }
38829046d53SLisandro Dalcin 
38929046d53SLisandro Dalcin   if (ilocal) {
39095fce210SBarry Smith     switch (localmode) {
39195fce210SBarry Smith     case PETSC_COPY_VALUES:
392785e854fSJed Brown       ierr = PetscMalloc1(nleaves,&sf->mine_alloc);CHKERRQ(ierr);
393580bdb30SBarry Smith       ierr = PetscArraycpy(sf->mine_alloc,ilocal,nleaves);CHKERRQ(ierr);
39495fce210SBarry Smith       sf->mine = sf->mine_alloc;
39595fce210SBarry Smith       break;
39695fce210SBarry Smith     case PETSC_OWN_POINTER:
39795fce210SBarry Smith       sf->mine_alloc = (PetscInt*)ilocal;
39895fce210SBarry Smith       sf->mine       = sf->mine_alloc;
39995fce210SBarry Smith       break;
40095fce210SBarry Smith     case PETSC_USE_POINTER:
40129046d53SLisandro Dalcin       sf->mine_alloc = NULL;
40295fce210SBarry Smith       sf->mine       = (PetscInt*)ilocal;
40395fce210SBarry Smith       break;
40495fce210SBarry Smith     default: SETERRQ(PetscObjectComm((PetscObject)sf),PETSC_ERR_ARG_OUTOFRANGE,"Unknown localmode");
40595fce210SBarry Smith     }
40695fce210SBarry Smith   }
40729046d53SLisandro Dalcin 
40895fce210SBarry Smith   switch (remotemode) {
40995fce210SBarry Smith   case PETSC_COPY_VALUES:
410785e854fSJed Brown     ierr = PetscMalloc1(nleaves,&sf->remote_alloc);CHKERRQ(ierr);
411580bdb30SBarry Smith     ierr = PetscArraycpy(sf->remote_alloc,iremote,nleaves);CHKERRQ(ierr);
41295fce210SBarry Smith     sf->remote = sf->remote_alloc;
41395fce210SBarry Smith     break;
41495fce210SBarry Smith   case PETSC_OWN_POINTER:
41595fce210SBarry Smith     sf->remote_alloc = (PetscSFNode*)iremote;
41695fce210SBarry Smith     sf->remote       = sf->remote_alloc;
41795fce210SBarry Smith     break;
41895fce210SBarry Smith   case PETSC_USE_POINTER:
41929046d53SLisandro Dalcin     sf->remote_alloc = NULL;
42095fce210SBarry Smith     sf->remote       = (PetscSFNode*)iremote;
42195fce210SBarry Smith     break;
42295fce210SBarry Smith   default: SETERRQ(PetscObjectComm((PetscObject)sf),PETSC_ERR_ARG_OUTOFRANGE,"Unknown remotemode");
42395fce210SBarry Smith   }
42495fce210SBarry Smith 
425563ffbabSMatthew G. Knepley   ierr = PetscLogEventEnd(PETSCSF_SetGraph,sf,0,0,0);CHKERRQ(ierr);
42629046d53SLisandro Dalcin   sf->graphset = PETSC_TRUE;
42795fce210SBarry Smith   PetscFunctionReturn(0);
42895fce210SBarry Smith }
42995fce210SBarry Smith 
43029046d53SLisandro Dalcin /*@
431dd5b3ca6SJunchao Zhang   PetscSFSetGraphWithPattern - Sets the graph of an SF with a specific pattern
432dd5b3ca6SJunchao Zhang 
433dd5b3ca6SJunchao Zhang   Collective
434dd5b3ca6SJunchao Zhang 
435dd5b3ca6SJunchao Zhang   Input Parameters:
436dd5b3ca6SJunchao Zhang + sf      - The PetscSF
437dd5b3ca6SJunchao Zhang . map     - Layout of roots over all processes (insignificant when pattern is PETSCSF_PATTERN_ALLTOALL)
438dd5b3ca6SJunchao Zhang - pattern - One of PETSCSF_PATTERN_ALLGATHER, PETSCSF_PATTERN_GATHER, PETSCSF_PATTERN_ALLTOALL
439dd5b3ca6SJunchao Zhang 
440dd5b3ca6SJunchao Zhang   Notes:
441dd5b3ca6SJunchao Zhang   It is easier to explain PetscSFPattern using vectors. Suppose we have an MPI vector x and its layout is map.
442dd5b3ca6SJunchao Zhang   n and N are local and global sizes of x respectively.
443dd5b3ca6SJunchao Zhang 
444dd5b3ca6SJunchao Zhang   With PETSCSF_PATTERN_ALLGATHER, the routine creates a graph that if one does Bcast on it, it will copy x to
445dd5b3ca6SJunchao Zhang   sequential vectors y on all ranks.
446dd5b3ca6SJunchao Zhang 
447dd5b3ca6SJunchao Zhang   With PETSCSF_PATTERN_GATHER, the routine creates a graph that if one does Bcast on it, it will copy x to a
448dd5b3ca6SJunchao Zhang   sequential vector y on rank 0.
449dd5b3ca6SJunchao Zhang 
450dd5b3ca6SJunchao Zhang   In above cases, entries of x are roots and entries of y are leaves.
451dd5b3ca6SJunchao Zhang 
452dd5b3ca6SJunchao Zhang   With PETSCSF_PATTERN_ALLTOALL, map is insignificant. Suppose NP is size of sf's communicator. The routine
453dd5b3ca6SJunchao Zhang   creates a graph that every rank has NP leaves and NP roots. On rank i, its leaf j is connected to root i
454dd5b3ca6SJunchao Zhang   of rank j. Here 0 <=i,j<NP. It is a kind of MPI_Alltoall with sendcount/recvcount being 1. Note that it does
455dd5b3ca6SJunchao Zhang   not mean one can not send multiple items. One just needs to create a new MPI datatype for the mulptiple data
456dd5b3ca6SJunchao Zhang   items with MPI_Type_contiguous() and use that as the <unit> argument in SF routines.
457dd5b3ca6SJunchao Zhang 
458dd5b3ca6SJunchao Zhang   In this case, roots and leaves are symmetric.
459dd5b3ca6SJunchao Zhang 
460dd5b3ca6SJunchao Zhang   Level: intermediate
461dd5b3ca6SJunchao Zhang  @*/
462dd5b3ca6SJunchao Zhang PetscErrorCode PetscSFSetGraphWithPattern(PetscSF sf,PetscLayout map,PetscSFPattern pattern)
463dd5b3ca6SJunchao Zhang {
464dd5b3ca6SJunchao Zhang   MPI_Comm       comm;
465dd5b3ca6SJunchao Zhang   PetscInt       n,N,res[2];
466dd5b3ca6SJunchao Zhang   PetscMPIInt    rank,size;
467dd5b3ca6SJunchao Zhang   PetscSFType    type;
468dd5b3ca6SJunchao Zhang   PetscErrorCode ierr;
469dd5b3ca6SJunchao Zhang 
470dd5b3ca6SJunchao Zhang   PetscFunctionBegin;
471dd5b3ca6SJunchao Zhang   ierr = PetscObjectGetComm((PetscObject)sf, &comm);CHKERRQ(ierr);
472dd5b3ca6SJunchao Zhang   if (pattern < PETSCSF_PATTERN_ALLGATHER || pattern > PETSCSF_PATTERN_ALLTOALL) SETERRQ1(comm,PETSC_ERR_ARG_OUTOFRANGE,"Unsupported PetscSFPattern %D\n",pattern);
473dd5b3ca6SJunchao Zhang   ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr);
474dd5b3ca6SJunchao Zhang   ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr);
475dd5b3ca6SJunchao Zhang 
476dd5b3ca6SJunchao Zhang   if (pattern == PETSCSF_PATTERN_ALLTOALL) {
477dd5b3ca6SJunchao Zhang     type = PETSCSFALLTOALL;
478dd5b3ca6SJunchao Zhang     ierr = PetscLayoutCreate(comm,&sf->map);CHKERRQ(ierr);
479dd5b3ca6SJunchao Zhang     ierr = PetscLayoutSetLocalSize(sf->map,size);CHKERRQ(ierr);
480dd5b3ca6SJunchao Zhang     ierr = PetscLayoutSetSize(sf->map,((PetscInt)size)*size);CHKERRQ(ierr);
481dd5b3ca6SJunchao Zhang     ierr = PetscLayoutSetUp(sf->map);CHKERRQ(ierr);
482dd5b3ca6SJunchao Zhang   } else {
483dd5b3ca6SJunchao Zhang     ierr   = PetscLayoutGetLocalSize(map,&n);CHKERRQ(ierr);
484dd5b3ca6SJunchao Zhang     ierr   = PetscLayoutGetSize(map,&N);CHKERRQ(ierr);
485dd5b3ca6SJunchao Zhang     res[0] = n;
486dd5b3ca6SJunchao Zhang     res[1] = -n;
487dd5b3ca6SJunchao Zhang     /* Check if n are same over all ranks so that we can optimize it */
488dd5b3ca6SJunchao Zhang     ierr   = MPIU_Allreduce(MPI_IN_PLACE,res,2,MPIU_INT,MPI_MAX,comm);CHKERRQ(ierr);
489dd5b3ca6SJunchao Zhang     if (res[0] == -res[1]) { /* same n */
490dd5b3ca6SJunchao Zhang       type = (pattern == PETSCSF_PATTERN_ALLGATHER) ? PETSCSFALLGATHER  : PETSCSFGATHER;
491dd5b3ca6SJunchao Zhang     } else {
492dd5b3ca6SJunchao Zhang       type = (pattern == PETSCSF_PATTERN_ALLGATHER) ? PETSCSFALLGATHERV : PETSCSFGATHERV;
493dd5b3ca6SJunchao Zhang     }
494dd5b3ca6SJunchao Zhang     ierr = PetscLayoutReference(map,&sf->map);CHKERRQ(ierr);
495dd5b3ca6SJunchao Zhang   }
496dd5b3ca6SJunchao Zhang   ierr = PetscSFSetType(sf,type);CHKERRQ(ierr);
497dd5b3ca6SJunchao Zhang 
498dd5b3ca6SJunchao Zhang   sf->pattern = pattern;
499dd5b3ca6SJunchao Zhang   sf->mine    = NULL; /* Contiguous */
500dd5b3ca6SJunchao Zhang 
501dd5b3ca6SJunchao Zhang   /* Set nleaves, nroots here in case user calls PetscSFGetGraph, which is legal to call even before PetscSFSetUp is called.
502dd5b3ca6SJunchao Zhang      Also set other easy stuff.
503dd5b3ca6SJunchao Zhang    */
504dd5b3ca6SJunchao Zhang   if (pattern == PETSCSF_PATTERN_ALLGATHER) {
505dd5b3ca6SJunchao Zhang     sf->nleaves      = N;
506dd5b3ca6SJunchao Zhang     sf->nroots       = n;
507dd5b3ca6SJunchao Zhang     sf->nranks       = size;
508dd5b3ca6SJunchao Zhang     sf->minleaf      = 0;
509dd5b3ca6SJunchao Zhang     sf->maxleaf      = N - 1;
510dd5b3ca6SJunchao Zhang   } else if (pattern == PETSCSF_PATTERN_GATHER) {
511dd5b3ca6SJunchao Zhang     sf->nleaves      = rank ? 0 : N;
512dd5b3ca6SJunchao Zhang     sf->nroots       = n;
513dd5b3ca6SJunchao Zhang     sf->nranks       = rank ? 0 : size;
514dd5b3ca6SJunchao Zhang     sf->minleaf      = 0;
515dd5b3ca6SJunchao Zhang     sf->maxleaf      = rank ? -1 : N - 1;
516dd5b3ca6SJunchao Zhang   } else if (pattern == PETSCSF_PATTERN_ALLTOALL) {
517dd5b3ca6SJunchao Zhang     sf->nleaves      = size;
518dd5b3ca6SJunchao Zhang     sf->nroots       = size;
519dd5b3ca6SJunchao Zhang     sf->nranks       = size;
520dd5b3ca6SJunchao Zhang     sf->minleaf      = 0;
521dd5b3ca6SJunchao Zhang     sf->maxleaf      = size - 1;
522dd5b3ca6SJunchao Zhang   }
523dd5b3ca6SJunchao Zhang   sf->ndranks  = 0; /* We do not need to separate out distinguished ranks for patterned graphs to improve communication performance */
524dd5b3ca6SJunchao Zhang   sf->graphset = PETSC_TRUE;
525dd5b3ca6SJunchao Zhang   PetscFunctionReturn(0);
526dd5b3ca6SJunchao Zhang }
527dd5b3ca6SJunchao Zhang 
528dd5b3ca6SJunchao Zhang /*@
52995fce210SBarry Smith    PetscSFCreateInverseSF - given a PetscSF in which all vertices have degree 1, creates the inverse map
53095fce210SBarry Smith 
53195fce210SBarry Smith    Collective
53295fce210SBarry Smith 
53395fce210SBarry Smith    Input Arguments:
534dd5b3ca6SJunchao Zhang 
53595fce210SBarry Smith .  sf - star forest to invert
53695fce210SBarry Smith 
53795fce210SBarry Smith    Output Arguments:
53895fce210SBarry Smith .  isf - inverse of sf
53995fce210SBarry Smith    Level: advanced
54095fce210SBarry Smith 
54195fce210SBarry Smith    Notes:
54295fce210SBarry Smith    All roots must have degree 1.
54395fce210SBarry Smith 
54495fce210SBarry Smith    The local space may be a permutation, but cannot be sparse.
54595fce210SBarry Smith 
54695fce210SBarry Smith .seealso: PetscSFSetGraph()
54795fce210SBarry Smith @*/
54895fce210SBarry Smith PetscErrorCode PetscSFCreateInverseSF(PetscSF sf,PetscSF *isf)
54995fce210SBarry Smith {
55095fce210SBarry Smith   PetscErrorCode ierr;
55195fce210SBarry Smith   PetscMPIInt    rank;
55295fce210SBarry Smith   PetscInt       i,nroots,nleaves,maxlocal,count,*newilocal;
55395fce210SBarry Smith   const PetscInt *ilocal;
55495fce210SBarry Smith   PetscSFNode    *roots,*leaves;
55595fce210SBarry Smith 
55695fce210SBarry Smith   PetscFunctionBegin;
55729046d53SLisandro Dalcin   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
55829046d53SLisandro Dalcin   PetscSFCheckGraphSet(sf,1);
55929046d53SLisandro Dalcin   PetscValidPointer(isf,2);
56029046d53SLisandro Dalcin 
56195fce210SBarry Smith   ierr = PetscSFGetGraph(sf,&nroots,&nleaves,&ilocal,NULL);CHKERRQ(ierr);
56229046d53SLisandro Dalcin   maxlocal = sf->maxleaf+1; /* TODO: We should use PetscSFGetLeafRange() */
56329046d53SLisandro Dalcin 
56429046d53SLisandro Dalcin   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)sf),&rank);CHKERRQ(ierr);
565ae9aee6dSMatthew G. Knepley   ierr = PetscMalloc2(nroots,&roots,maxlocal,&leaves);CHKERRQ(ierr);
566ae9aee6dSMatthew G. Knepley   for (i=0; i<maxlocal; i++) {
56795fce210SBarry Smith     leaves[i].rank  = rank;
56895fce210SBarry Smith     leaves[i].index = i;
56995fce210SBarry Smith   }
57095fce210SBarry Smith   for (i=0; i <nroots; i++) {
57195fce210SBarry Smith     roots[i].rank  = -1;
57295fce210SBarry Smith     roots[i].index = -1;
57395fce210SBarry Smith   }
5748bfbc91cSJed Brown   ierr = PetscSFReduceBegin(sf,MPIU_2INT,leaves,roots,MPIU_REPLACE);CHKERRQ(ierr);
5758bfbc91cSJed Brown   ierr = PetscSFReduceEnd(sf,MPIU_2INT,leaves,roots,MPIU_REPLACE);CHKERRQ(ierr);
57695fce210SBarry Smith 
57795fce210SBarry Smith   /* Check whether our leaves are sparse */
57895fce210SBarry Smith   for (i=0,count=0; i<nroots; i++) if (roots[i].rank >= 0) count++;
57995fce210SBarry Smith   if (count == nroots) newilocal = NULL;
58095fce210SBarry Smith   else {                        /* Index for sparse leaves and compact "roots" array (which is to become our leaves). */
581785e854fSJed Brown     ierr = PetscMalloc1(count,&newilocal);CHKERRQ(ierr);
58295fce210SBarry Smith     for (i=0,count=0; i<nroots; i++) {
58395fce210SBarry Smith       if (roots[i].rank >= 0) {
58495fce210SBarry Smith         newilocal[count]   = i;
58595fce210SBarry Smith         roots[count].rank  = roots[i].rank;
58695fce210SBarry Smith         roots[count].index = roots[i].index;
58795fce210SBarry Smith         count++;
58895fce210SBarry Smith       }
58995fce210SBarry Smith     }
59095fce210SBarry Smith   }
59195fce210SBarry Smith 
59295fce210SBarry Smith   ierr = PetscSFDuplicate(sf,PETSCSF_DUPLICATE_CONFONLY,isf);CHKERRQ(ierr);
59395fce210SBarry Smith   ierr = PetscSFSetGraph(*isf,maxlocal,count,newilocal,PETSC_OWN_POINTER,roots,PETSC_COPY_VALUES);CHKERRQ(ierr);
59495fce210SBarry Smith   ierr = PetscFree2(roots,leaves);CHKERRQ(ierr);
59595fce210SBarry Smith   PetscFunctionReturn(0);
59695fce210SBarry Smith }
59795fce210SBarry Smith 
59895fce210SBarry Smith /*@
59995fce210SBarry Smith    PetscSFDuplicate - duplicate a PetscSF, optionally preserving rank connectivity and graph
60095fce210SBarry Smith 
60195fce210SBarry Smith    Collective
60295fce210SBarry Smith 
60395fce210SBarry Smith    Input Arguments:
60495fce210SBarry Smith +  sf - communication object to duplicate
60595fce210SBarry Smith -  opt - PETSCSF_DUPLICATE_CONFONLY, PETSCSF_DUPLICATE_RANKS, or PETSCSF_DUPLICATE_GRAPH (see PetscSFDuplicateOption)
60695fce210SBarry Smith 
60795fce210SBarry Smith    Output Arguments:
60895fce210SBarry Smith .  newsf - new communication object
60995fce210SBarry Smith 
61095fce210SBarry Smith    Level: beginner
61195fce210SBarry Smith 
61295fce210SBarry Smith .seealso: PetscSFCreate(), PetscSFSetType(), PetscSFSetGraph()
61395fce210SBarry Smith @*/
61495fce210SBarry Smith PetscErrorCode PetscSFDuplicate(PetscSF sf,PetscSFDuplicateOption opt,PetscSF *newsf)
61595fce210SBarry Smith {
61629046d53SLisandro Dalcin   PetscSFType    type;
61795fce210SBarry Smith   PetscErrorCode ierr;
61895fce210SBarry Smith 
61995fce210SBarry Smith   PetscFunctionBegin;
62029046d53SLisandro Dalcin   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
62129046d53SLisandro Dalcin   PetscValidLogicalCollectiveEnum(sf,opt,2);
62229046d53SLisandro Dalcin   PetscValidPointer(newsf,3);
62395fce210SBarry Smith   ierr = PetscSFCreate(PetscObjectComm((PetscObject)sf),newsf);CHKERRQ(ierr);
62429046d53SLisandro Dalcin   ierr = PetscSFGetType(sf,&type);CHKERRQ(ierr);
62529046d53SLisandro Dalcin   if (type) {ierr = PetscSFSetType(*newsf,type);CHKERRQ(ierr);}
62695fce210SBarry Smith   if (opt == PETSCSF_DUPLICATE_GRAPH) {
627dd5b3ca6SJunchao Zhang     PetscSFCheckGraphSet(sf,1);
628dd5b3ca6SJunchao Zhang     if (sf->pattern == PETSCSF_PATTERN_GENERAL) {
62995fce210SBarry Smith       PetscInt          nroots,nleaves;
63095fce210SBarry Smith       const PetscInt    *ilocal;
63195fce210SBarry Smith       const PetscSFNode *iremote;
63295fce210SBarry Smith       ierr = PetscSFGetGraph(sf,&nroots,&nleaves,&ilocal,&iremote);CHKERRQ(ierr);
63395fce210SBarry Smith       ierr = PetscSFSetGraph(*newsf,nroots,nleaves,ilocal,PETSC_COPY_VALUES,iremote,PETSC_COPY_VALUES);CHKERRQ(ierr);
634dd5b3ca6SJunchao Zhang     } else {
635dd5b3ca6SJunchao Zhang       ierr = PetscSFSetGraphWithPattern(*newsf,sf->map,sf->pattern);CHKERRQ(ierr);
636dd5b3ca6SJunchao Zhang     }
63795fce210SBarry Smith   }
63829046d53SLisandro Dalcin   if (sf->ops->Duplicate) {ierr = (*sf->ops->Duplicate)(sf,opt,*newsf);CHKERRQ(ierr);}
63995fce210SBarry Smith   PetscFunctionReturn(0);
64095fce210SBarry Smith }
64195fce210SBarry Smith 
64295fce210SBarry Smith /*@C
64395fce210SBarry Smith    PetscSFGetGraph - Get the graph specifying a parallel star forest
64495fce210SBarry Smith 
64595fce210SBarry Smith    Not Collective
64695fce210SBarry Smith 
64795fce210SBarry Smith    Input Arguments:
64895fce210SBarry Smith .  sf - star forest
64995fce210SBarry Smith 
65095fce210SBarry Smith    Output Arguments:
65195fce210SBarry Smith +  nroots - number of root vertices on the current process (these are possible targets for other process to attach leaves)
65295fce210SBarry Smith .  nleaves - number of leaf vertices on the current process, each of these references a root on any process
65395fce210SBarry Smith .  ilocal - locations of leaves in leafdata buffers
65495fce210SBarry Smith -  iremote - remote locations of root vertices for each leaf on the current process
65595fce210SBarry Smith 
656373e0d91SLisandro Dalcin    Notes:
657373e0d91SLisandro Dalcin    We are not currently requiring that the graph is set, thus returning nroots=-1 if it has not been set yet
658373e0d91SLisandro Dalcin 
659ca797d7aSLawrence Mitchell    When called from Fortran, the returned iremote array is a copy and must deallocated after use. Consequently, if you
660ca797d7aSLawrence Mitchell    want to update the graph, you must call PetscSFSetGraph after modifying the iremote array.
661ca797d7aSLawrence Mitchell 
66295fce210SBarry Smith    Level: intermediate
66395fce210SBarry Smith 
66495fce210SBarry Smith .seealso: PetscSFCreate(), PetscSFView(), PetscSFSetGraph()
66595fce210SBarry Smith @*/
66695fce210SBarry Smith PetscErrorCode PetscSFGetGraph(PetscSF sf,PetscInt *nroots,PetscInt *nleaves,const PetscInt **ilocal,const PetscSFNode **iremote)
66795fce210SBarry Smith {
668b8dee149SJunchao Zhang   PetscErrorCode ierr;
66995fce210SBarry Smith 
67095fce210SBarry Smith   PetscFunctionBegin;
67195fce210SBarry Smith   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
672b8dee149SJunchao Zhang   if (sf->ops->GetGraph) {
673b8dee149SJunchao Zhang     ierr = (sf->ops->GetGraph)(sf,nroots,nleaves,ilocal,iremote);CHKERRQ(ierr);
674b8dee149SJunchao Zhang   } else {
67595fce210SBarry Smith     if (nroots) *nroots = sf->nroots;
67695fce210SBarry Smith     if (nleaves) *nleaves = sf->nleaves;
67795fce210SBarry Smith     if (ilocal) *ilocal = sf->mine;
67895fce210SBarry Smith     if (iremote) *iremote = sf->remote;
679b8dee149SJunchao Zhang   }
68095fce210SBarry Smith   PetscFunctionReturn(0);
68195fce210SBarry Smith }
68295fce210SBarry Smith 
68329046d53SLisandro Dalcin /*@
68495fce210SBarry Smith    PetscSFGetLeafRange - Get the active leaf ranges
68595fce210SBarry Smith 
68695fce210SBarry Smith    Not Collective
68795fce210SBarry Smith 
68895fce210SBarry Smith    Input Arguments:
68995fce210SBarry Smith .  sf - star forest
69095fce210SBarry Smith 
69195fce210SBarry Smith    Output Arguments:
692dd5b3ca6SJunchao Zhang +  minleaf - minimum active leaf on this process. Return 0 if there are no leaves.
693dd5b3ca6SJunchao Zhang -  maxleaf - maximum active leaf on this process. Return -1 if there are no leaves.
69495fce210SBarry Smith 
69595fce210SBarry Smith    Level: developer
69695fce210SBarry Smith 
69795fce210SBarry Smith .seealso: PetscSFCreate(), PetscSFView(), PetscSFSetGraph(), PetscSFGetGraph()
69895fce210SBarry Smith @*/
69995fce210SBarry Smith PetscErrorCode PetscSFGetLeafRange(PetscSF sf,PetscInt *minleaf,PetscInt *maxleaf)
70095fce210SBarry Smith {
70195fce210SBarry Smith 
70295fce210SBarry Smith   PetscFunctionBegin;
70395fce210SBarry Smith   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
70429046d53SLisandro Dalcin   PetscSFCheckGraphSet(sf,1);
70595fce210SBarry Smith   if (minleaf) *minleaf = sf->minleaf;
70695fce210SBarry Smith   if (maxleaf) *maxleaf = sf->maxleaf;
70795fce210SBarry Smith   PetscFunctionReturn(0);
70895fce210SBarry Smith }
70995fce210SBarry Smith 
71095fce210SBarry Smith /*@C
711fe2efc57SMark    PetscSFViewFromOptions - View from Options
712fe2efc57SMark 
713fe2efc57SMark    Collective on PetscSF
714fe2efc57SMark 
715fe2efc57SMark    Input Parameters:
716fe2efc57SMark +  A - the star forest
717736c3998SJose E. Roman .  obj - Optional object
718736c3998SJose E. Roman -  name - command line option
719fe2efc57SMark 
720fe2efc57SMark    Level: intermediate
721fe2efc57SMark .seealso:  PetscSF, PetscSFView, PetscObjectViewFromOptions(), PetscSFCreate()
722fe2efc57SMark @*/
723fe2efc57SMark PetscErrorCode  PetscSFViewFromOptions(PetscSF A,PetscObject obj,const char name[])
724fe2efc57SMark {
725fe2efc57SMark   PetscErrorCode ierr;
726fe2efc57SMark 
727fe2efc57SMark   PetscFunctionBegin;
728fe2efc57SMark   PetscValidHeaderSpecific(A,PETSCSF_CLASSID,1);
729fe2efc57SMark   ierr = PetscObjectViewFromOptions((PetscObject)A,obj,name);CHKERRQ(ierr);
730fe2efc57SMark   PetscFunctionReturn(0);
731fe2efc57SMark }
732fe2efc57SMark 
733fe2efc57SMark /*@C
73495fce210SBarry Smith    PetscSFView - view a star forest
73595fce210SBarry Smith 
73695fce210SBarry Smith    Collective
73795fce210SBarry Smith 
73895fce210SBarry Smith    Input Arguments:
73995fce210SBarry Smith +  sf - star forest
74095fce210SBarry Smith -  viewer - viewer to display graph, for example PETSC_VIEWER_STDOUT_WORLD
74195fce210SBarry Smith 
74295fce210SBarry Smith    Level: beginner
74395fce210SBarry Smith 
74495fce210SBarry Smith .seealso: PetscSFCreate(), PetscSFSetGraph()
74595fce210SBarry Smith @*/
74695fce210SBarry Smith PetscErrorCode PetscSFView(PetscSF sf,PetscViewer viewer)
74795fce210SBarry Smith {
74895fce210SBarry Smith   PetscErrorCode    ierr;
74995fce210SBarry Smith   PetscBool         iascii;
75095fce210SBarry Smith   PetscViewerFormat format;
75195fce210SBarry Smith 
75295fce210SBarry Smith   PetscFunctionBegin;
75395fce210SBarry Smith   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
75495fce210SBarry Smith   if (!viewer) {ierr = PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject)sf),&viewer);CHKERRQ(ierr);}
75595fce210SBarry Smith   PetscValidHeaderSpecific(viewer,PETSC_VIEWER_CLASSID,2);
75695fce210SBarry Smith   PetscCheckSameComm(sf,1,viewer,2);
75780153354SVaclav Hapla   if (sf->graphset) {ierr = PetscSFSetUp(sf);CHKERRQ(ierr);}
75895fce210SBarry Smith   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
75995fce210SBarry Smith   if (iascii) {
76095fce210SBarry Smith     PetscMPIInt rank;
76181bfa7aaSJed Brown     PetscInt    ii,i,j;
76295fce210SBarry Smith 
763dae58748SBarry Smith     ierr = PetscObjectPrintClassNamePrefixType((PetscObject)sf,viewer);CHKERRQ(ierr);
76495fce210SBarry Smith     ierr = PetscViewerASCIIPushTab(viewer);CHKERRQ(ierr);
76595fce210SBarry Smith     if (sf->ops->View) {ierr = (*sf->ops->View)(sf,viewer);CHKERRQ(ierr);}
766dd5b3ca6SJunchao Zhang     if (sf->pattern == PETSCSF_PATTERN_GENERAL) {
76780153354SVaclav Hapla       if (!sf->graphset) {
76880153354SVaclav Hapla         ierr = PetscViewerASCIIPrintf(viewer,"PetscSFSetGraph() has not been called yet\n");CHKERRQ(ierr);
76980153354SVaclav Hapla         ierr = PetscViewerASCIIPopTab(viewer);CHKERRQ(ierr);
77080153354SVaclav Hapla         PetscFunctionReturn(0);
77180153354SVaclav Hapla       }
77295fce210SBarry Smith       ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)sf),&rank);CHKERRQ(ierr);
7731575c14dSBarry Smith       ierr = PetscViewerASCIIPushSynchronized(viewer);CHKERRQ(ierr);
77495fce210SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Number of roots=%D, leaves=%D, remote ranks=%D\n",rank,sf->nroots,sf->nleaves,sf->nranks);CHKERRQ(ierr);
77595fce210SBarry Smith       for (i=0; i<sf->nleaves; i++) {
77695fce210SBarry Smith         ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] %D <- (%D,%D)\n",rank,sf->mine ? sf->mine[i] : i,sf->remote[i].rank,sf->remote[i].index);CHKERRQ(ierr);
77795fce210SBarry Smith       }
77895fce210SBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
77995fce210SBarry Smith       ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
78095fce210SBarry Smith       if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
78181bfa7aaSJed Brown         PetscMPIInt *tmpranks,*perm;
78281bfa7aaSJed Brown         ierr = PetscMalloc2(sf->nranks,&tmpranks,sf->nranks,&perm);CHKERRQ(ierr);
783580bdb30SBarry Smith         ierr = PetscArraycpy(tmpranks,sf->ranks,sf->nranks);CHKERRQ(ierr);
78481bfa7aaSJed Brown         for (i=0; i<sf->nranks; i++) perm[i] = i;
78581bfa7aaSJed Brown         ierr = PetscSortMPIIntWithArray(sf->nranks,tmpranks,perm);CHKERRQ(ierr);
78695fce210SBarry Smith         ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Roots referenced by my leaves, by rank\n",rank);CHKERRQ(ierr);
78781bfa7aaSJed Brown         for (ii=0; ii<sf->nranks; ii++) {
78881bfa7aaSJed Brown           i = perm[ii];
7897904a332SBarry Smith           ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] %d: %D edges\n",rank,sf->ranks[i],sf->roffset[i+1]-sf->roffset[i]);CHKERRQ(ierr);
79095fce210SBarry Smith           for (j=sf->roffset[i]; j<sf->roffset[i+1]; j++) {
79195fce210SBarry Smith             ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d]    %D <- %D\n",rank,sf->rmine[j],sf->rremote[j]);CHKERRQ(ierr);
79295fce210SBarry Smith           }
79395fce210SBarry Smith         }
79481bfa7aaSJed Brown         ierr = PetscFree2(tmpranks,perm);CHKERRQ(ierr);
79595fce210SBarry Smith       }
79695fce210SBarry Smith       ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
7971575c14dSBarry Smith       ierr = PetscViewerASCIIPopSynchronized(viewer);CHKERRQ(ierr);
798dd5b3ca6SJunchao Zhang     }
79995fce210SBarry Smith     ierr = PetscViewerASCIIPopTab(viewer);CHKERRQ(ierr);
80095fce210SBarry Smith   }
80195fce210SBarry Smith   PetscFunctionReturn(0);
80295fce210SBarry Smith }
80395fce210SBarry Smith 
80495fce210SBarry Smith /*@C
805dec1416fSJunchao Zhang    PetscSFGetRootRanks - Get root ranks and number of vertices referenced by leaves on this process
80695fce210SBarry Smith 
80795fce210SBarry Smith    Not Collective
80895fce210SBarry Smith 
80995fce210SBarry Smith    Input Arguments:
81095fce210SBarry Smith .  sf - star forest
81195fce210SBarry Smith 
81295fce210SBarry Smith    Output Arguments:
81395fce210SBarry Smith +  nranks - number of ranks referenced by local part
81495fce210SBarry Smith .  ranks - array of ranks
81595fce210SBarry Smith .  roffset - offset in rmine/rremote for each rank (length nranks+1)
81695fce210SBarry Smith .  rmine - concatenated array holding local indices referencing each remote rank
81795fce210SBarry Smith -  rremote - concatenated array holding remote indices referenced for each remote rank
81895fce210SBarry Smith 
81995fce210SBarry Smith    Level: developer
82095fce210SBarry Smith 
821dec1416fSJunchao Zhang .seealso: PetscSFGetLeafRanks()
82295fce210SBarry Smith @*/
823dec1416fSJunchao Zhang PetscErrorCode PetscSFGetRootRanks(PetscSF sf,PetscInt *nranks,const PetscMPIInt **ranks,const PetscInt **roffset,const PetscInt **rmine,const PetscInt **rremote)
82495fce210SBarry Smith {
825dec1416fSJunchao Zhang   PetscErrorCode ierr;
82695fce210SBarry Smith 
82795fce210SBarry Smith   PetscFunctionBegin;
82895fce210SBarry Smith   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
82929046d53SLisandro Dalcin   if (!sf->setupcalled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Must call PetscSFSetUp() before obtaining ranks");
830dec1416fSJunchao Zhang   if (sf->ops->GetRootRanks) {
831dec1416fSJunchao Zhang     ierr = (sf->ops->GetRootRanks)(sf,nranks,ranks,roffset,rmine,rremote);CHKERRQ(ierr);
832dec1416fSJunchao Zhang   } else {
833dec1416fSJunchao Zhang     /* The generic implementation */
83495fce210SBarry Smith     if (nranks)  *nranks  = sf->nranks;
83595fce210SBarry Smith     if (ranks)   *ranks   = sf->ranks;
83695fce210SBarry Smith     if (roffset) *roffset = sf->roffset;
83795fce210SBarry Smith     if (rmine)   *rmine   = sf->rmine;
83895fce210SBarry Smith     if (rremote) *rremote = sf->rremote;
839dec1416fSJunchao Zhang   }
84095fce210SBarry Smith   PetscFunctionReturn(0);
84195fce210SBarry Smith }
84295fce210SBarry Smith 
8438750ddebSJunchao Zhang /*@C
8448750ddebSJunchao Zhang    PetscSFGetLeafRanks - Get leaf ranks referencing roots on this process
8458750ddebSJunchao Zhang 
8468750ddebSJunchao Zhang    Not Collective
8478750ddebSJunchao Zhang 
8488750ddebSJunchao Zhang    Input Arguments:
8498750ddebSJunchao Zhang .  sf - star forest
8508750ddebSJunchao Zhang 
8518750ddebSJunchao Zhang    Output Arguments:
8528750ddebSJunchao Zhang +  niranks - number of leaf ranks referencing roots on this process
8538750ddebSJunchao Zhang .  iranks - array of ranks
8548750ddebSJunchao Zhang .  ioffset - offset in irootloc for each rank (length niranks+1)
8558750ddebSJunchao Zhang -  irootloc - concatenated array holding local indices of roots referenced by each leaf rank
8568750ddebSJunchao Zhang 
8578750ddebSJunchao Zhang    Level: developer
8588750ddebSJunchao Zhang 
859dec1416fSJunchao Zhang .seealso: PetscSFGetRootRanks()
8608750ddebSJunchao Zhang @*/
8618750ddebSJunchao Zhang PetscErrorCode PetscSFGetLeafRanks(PetscSF sf,PetscInt *niranks,const PetscMPIInt **iranks,const PetscInt **ioffset,const PetscInt **irootloc)
8628750ddebSJunchao Zhang {
8638750ddebSJunchao Zhang   PetscErrorCode ierr;
8648750ddebSJunchao Zhang 
8658750ddebSJunchao Zhang   PetscFunctionBegin;
8668750ddebSJunchao Zhang   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
8678750ddebSJunchao Zhang   if (!sf->setupcalled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Must call PetscSFSetUp() before obtaining ranks");
8688750ddebSJunchao Zhang   if (sf->ops->GetLeafRanks) {
8698750ddebSJunchao Zhang     ierr = (sf->ops->GetLeafRanks)(sf,niranks,iranks,ioffset,irootloc);CHKERRQ(ierr);
8708750ddebSJunchao Zhang   } else {
8718750ddebSJunchao Zhang     PetscSFType type;
8728750ddebSJunchao Zhang     ierr = PetscSFGetType(sf,&type);CHKERRQ(ierr);
8738750ddebSJunchao Zhang     SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"PetscSFGetLeafRanks() is not supported on this StarForest type: %s", type);
8748750ddebSJunchao Zhang   }
8758750ddebSJunchao Zhang   PetscFunctionReturn(0);
8768750ddebSJunchao Zhang }
8778750ddebSJunchao Zhang 
878b5a8e515SJed Brown static PetscBool InList(PetscMPIInt needle,PetscMPIInt n,const PetscMPIInt *list) {
879b5a8e515SJed Brown   PetscInt i;
880b5a8e515SJed Brown   for (i=0; i<n; i++) {
881b5a8e515SJed Brown     if (needle == list[i]) return PETSC_TRUE;
882b5a8e515SJed Brown   }
883b5a8e515SJed Brown   return PETSC_FALSE;
884b5a8e515SJed Brown }
885b5a8e515SJed Brown 
88695fce210SBarry Smith /*@C
88721c688dcSJed Brown    PetscSFSetUpRanks - Set up data structures associated with ranks; this is for internal use by PetscSF implementations.
88821c688dcSJed Brown 
88921c688dcSJed Brown    Collective
89021c688dcSJed Brown 
89121c688dcSJed Brown    Input Arguments:
892b5a8e515SJed Brown +  sf - PetscSF to set up; PetscSFSetGraph() must have been called
893b5a8e515SJed Brown -  dgroup - MPI_Group of ranks to be distinguished (e.g., for self or shared memory exchange)
89421c688dcSJed Brown 
89521c688dcSJed Brown    Level: developer
89621c688dcSJed Brown 
897dec1416fSJunchao Zhang .seealso: PetscSFGetRootRanks()
89821c688dcSJed Brown @*/
899b5a8e515SJed Brown PetscErrorCode PetscSFSetUpRanks(PetscSF sf,MPI_Group dgroup)
90021c688dcSJed Brown {
90121c688dcSJed Brown   PetscErrorCode     ierr;
90221c688dcSJed Brown   PetscTable         table;
90321c688dcSJed Brown   PetscTablePosition pos;
904b5a8e515SJed Brown   PetscMPIInt        size,groupsize,*groupranks;
905247e8311SStefano Zampini   PetscInt           *rcount,*ranks;
906247e8311SStefano Zampini   PetscInt           i, irank = -1,orank = -1;
90721c688dcSJed Brown 
90821c688dcSJed Brown   PetscFunctionBegin;
90921c688dcSJed Brown   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
91029046d53SLisandro Dalcin   PetscSFCheckGraphSet(sf,1);
91121c688dcSJed Brown   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)sf),&size);CHKERRQ(ierr);
91221c688dcSJed Brown   ierr = PetscTableCreate(10,size,&table);CHKERRQ(ierr);
91321c688dcSJed Brown   for (i=0; i<sf->nleaves; i++) {
91421c688dcSJed Brown     /* Log 1-based rank */
91521c688dcSJed Brown     ierr = PetscTableAdd(table,sf->remote[i].rank+1,1,ADD_VALUES);CHKERRQ(ierr);
91621c688dcSJed Brown   }
91721c688dcSJed Brown   ierr = PetscTableGetCount(table,&sf->nranks);CHKERRQ(ierr);
91821c688dcSJed Brown   ierr = PetscMalloc4(sf->nranks,&sf->ranks,sf->nranks+1,&sf->roffset,sf->nleaves,&sf->rmine,sf->nleaves,&sf->rremote);CHKERRQ(ierr);
91921c688dcSJed Brown   ierr = PetscMalloc2(sf->nranks,&rcount,sf->nranks,&ranks);CHKERRQ(ierr);
92021c688dcSJed Brown   ierr = PetscTableGetHeadPosition(table,&pos);CHKERRQ(ierr);
92121c688dcSJed Brown   for (i=0; i<sf->nranks; i++) {
92221c688dcSJed Brown     ierr = PetscTableGetNext(table,&pos,&ranks[i],&rcount[i]);CHKERRQ(ierr);
92321c688dcSJed Brown     ranks[i]--;             /* Convert back to 0-based */
92421c688dcSJed Brown   }
92521c688dcSJed Brown   ierr = PetscTableDestroy(&table);CHKERRQ(ierr);
926b5a8e515SJed Brown 
927b5a8e515SJed Brown   /* We expect that dgroup is reliably "small" while nranks could be large */
928b5a8e515SJed Brown   {
9297fb8a5e4SKarl Rupp     MPI_Group group = MPI_GROUP_NULL;
930b5a8e515SJed Brown     PetscMPIInt *dgroupranks;
931b5a8e515SJed Brown     ierr = MPI_Comm_group(PetscObjectComm((PetscObject)sf),&group);CHKERRQ(ierr);
932b5a8e515SJed Brown     ierr = MPI_Group_size(dgroup,&groupsize);CHKERRQ(ierr);
933b5a8e515SJed Brown     ierr = PetscMalloc1(groupsize,&dgroupranks);CHKERRQ(ierr);
934b5a8e515SJed Brown     ierr = PetscMalloc1(groupsize,&groupranks);CHKERRQ(ierr);
935b5a8e515SJed Brown     for (i=0; i<groupsize; i++) dgroupranks[i] = i;
936f3fc9a17SJed Brown     if (groupsize) {ierr = MPI_Group_translate_ranks(dgroup,groupsize,dgroupranks,group,groupranks);CHKERRQ(ierr);}
937b5a8e515SJed Brown     ierr = MPI_Group_free(&group);CHKERRQ(ierr);
938b5a8e515SJed Brown     ierr = PetscFree(dgroupranks);CHKERRQ(ierr);
939b5a8e515SJed Brown   }
940b5a8e515SJed Brown 
941b5a8e515SJed Brown   /* Partition ranks[] into distinguished (first sf->ndranks) followed by non-distinguished */
942b5a8e515SJed Brown   for (sf->ndranks=0,i=sf->nranks; sf->ndranks<i; ) {
943b5a8e515SJed Brown     for (i--; sf->ndranks<i; i--) { /* Scan i backward looking for distinguished rank */
944b5a8e515SJed Brown       if (InList(ranks[i],groupsize,groupranks)) break;
945b5a8e515SJed Brown     }
946b5a8e515SJed Brown     for ( ; sf->ndranks<=i; sf->ndranks++) { /* Scan sf->ndranks forward looking for non-distinguished rank */
947b5a8e515SJed Brown       if (!InList(ranks[sf->ndranks],groupsize,groupranks)) break;
948b5a8e515SJed Brown     }
949b5a8e515SJed Brown     if (sf->ndranks < i) {                         /* Swap ranks[sf->ndranks] with ranks[i] */
950b5a8e515SJed Brown       PetscInt    tmprank,tmpcount;
951247e8311SStefano Zampini 
952b5a8e515SJed Brown       tmprank             = ranks[i];
953b5a8e515SJed Brown       tmpcount            = rcount[i];
954b5a8e515SJed Brown       ranks[i]            = ranks[sf->ndranks];
955b5a8e515SJed Brown       rcount[i]           = rcount[sf->ndranks];
956b5a8e515SJed Brown       ranks[sf->ndranks]  = tmprank;
957b5a8e515SJed Brown       rcount[sf->ndranks] = tmpcount;
958b5a8e515SJed Brown       sf->ndranks++;
959b5a8e515SJed Brown     }
960b5a8e515SJed Brown   }
961b5a8e515SJed Brown   ierr = PetscFree(groupranks);CHKERRQ(ierr);
962b5a8e515SJed Brown   ierr = PetscSortIntWithArray(sf->ndranks,ranks,rcount);CHKERRQ(ierr);
963b5a8e515SJed Brown   ierr = PetscSortIntWithArray(sf->nranks-sf->ndranks,ranks+sf->ndranks,rcount+sf->ndranks);CHKERRQ(ierr);
96421c688dcSJed Brown   sf->roffset[0] = 0;
96521c688dcSJed Brown   for (i=0; i<sf->nranks; i++) {
96621c688dcSJed Brown     ierr = PetscMPIIntCast(ranks[i],sf->ranks+i);CHKERRQ(ierr);
96721c688dcSJed Brown     sf->roffset[i+1] = sf->roffset[i] + rcount[i];
96821c688dcSJed Brown     rcount[i]        = 0;
96921c688dcSJed Brown   }
970247e8311SStefano Zampini   for (i=0, irank = -1, orank = -1; i<sf->nleaves; i++) {
971247e8311SStefano Zampini     /* short circuit */
972247e8311SStefano Zampini     if (orank != sf->remote[i].rank) {
97321c688dcSJed Brown       /* Search for index of iremote[i].rank in sf->ranks */
974b5a8e515SJed Brown       ierr = PetscFindMPIInt(sf->remote[i].rank,sf->ndranks,sf->ranks,&irank);CHKERRQ(ierr);
975b5a8e515SJed Brown       if (irank < 0) {
976b5a8e515SJed Brown         ierr = PetscFindMPIInt(sf->remote[i].rank,sf->nranks-sf->ndranks,sf->ranks+sf->ndranks,&irank);CHKERRQ(ierr);
977b5a8e515SJed Brown         if (irank >= 0) irank += sf->ndranks;
97821c688dcSJed Brown       }
979247e8311SStefano Zampini       orank = sf->remote[i].rank;
980247e8311SStefano Zampini     }
981b5a8e515SJed Brown     if (irank < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Could not find rank %D in array",sf->remote[i].rank);
98221c688dcSJed Brown     sf->rmine[sf->roffset[irank] + rcount[irank]]   = sf->mine ? sf->mine[i] : i;
98321c688dcSJed Brown     sf->rremote[sf->roffset[irank] + rcount[irank]] = sf->remote[i].index;
98421c688dcSJed Brown     rcount[irank]++;
98521c688dcSJed Brown   }
98621c688dcSJed Brown   ierr = PetscFree2(rcount,ranks);CHKERRQ(ierr);
98721c688dcSJed Brown   PetscFunctionReturn(0);
98821c688dcSJed Brown }
98921c688dcSJed Brown 
99021c688dcSJed Brown /*@C
99195fce210SBarry Smith    PetscSFGetGroups - gets incoming and outgoing process groups
99295fce210SBarry Smith 
99395fce210SBarry Smith    Collective
99495fce210SBarry Smith 
99595fce210SBarry Smith    Input Argument:
99695fce210SBarry Smith .  sf - star forest
99795fce210SBarry Smith 
99895fce210SBarry Smith    Output Arguments:
99995fce210SBarry Smith +  incoming - group of origin processes for incoming edges (leaves that reference my roots)
100095fce210SBarry Smith -  outgoing - group of destination processes for outgoing edges (roots that I reference)
100195fce210SBarry Smith 
100295fce210SBarry Smith    Level: developer
100395fce210SBarry Smith 
100495fce210SBarry Smith .seealso: PetscSFGetWindow(), PetscSFRestoreWindow()
100595fce210SBarry Smith @*/
100695fce210SBarry Smith PetscErrorCode PetscSFGetGroups(PetscSF sf,MPI_Group *incoming,MPI_Group *outgoing)
100795fce210SBarry Smith {
100895fce210SBarry Smith   PetscErrorCode ierr;
10097fb8a5e4SKarl Rupp   MPI_Group      group = MPI_GROUP_NULL;
101095fce210SBarry Smith 
101195fce210SBarry Smith   PetscFunctionBegin;
101229046d53SLisandro Dalcin   if (!sf->setupcalled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Must call PetscSFSetUp() before obtaining groups");
101395fce210SBarry Smith   if (sf->ingroup == MPI_GROUP_NULL) {
101495fce210SBarry Smith     PetscInt       i;
101595fce210SBarry Smith     const PetscInt *indegree;
101695fce210SBarry Smith     PetscMPIInt    rank,*outranks,*inranks;
101795fce210SBarry Smith     PetscSFNode    *remote;
101895fce210SBarry Smith     PetscSF        bgcount;
101995fce210SBarry Smith 
102095fce210SBarry Smith     /* Compute the number of incoming ranks */
1021785e854fSJed Brown     ierr = PetscMalloc1(sf->nranks,&remote);CHKERRQ(ierr);
102295fce210SBarry Smith     for (i=0; i<sf->nranks; i++) {
102395fce210SBarry Smith       remote[i].rank  = sf->ranks[i];
102495fce210SBarry Smith       remote[i].index = 0;
102595fce210SBarry Smith     }
102695fce210SBarry Smith     ierr = PetscSFDuplicate(sf,PETSCSF_DUPLICATE_CONFONLY,&bgcount);CHKERRQ(ierr);
102795fce210SBarry Smith     ierr = PetscSFSetGraph(bgcount,1,sf->nranks,NULL,PETSC_COPY_VALUES,remote,PETSC_OWN_POINTER);CHKERRQ(ierr);
102895fce210SBarry Smith     ierr = PetscSFComputeDegreeBegin(bgcount,&indegree);CHKERRQ(ierr);
102995fce210SBarry Smith     ierr = PetscSFComputeDegreeEnd(bgcount,&indegree);CHKERRQ(ierr);
103095fce210SBarry Smith 
103195fce210SBarry Smith     /* Enumerate the incoming ranks */
1032dcca6d9dSJed Brown     ierr = PetscMalloc2(indegree[0],&inranks,sf->nranks,&outranks);CHKERRQ(ierr);
103395fce210SBarry Smith     ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)sf),&rank);CHKERRQ(ierr);
103495fce210SBarry Smith     for (i=0; i<sf->nranks; i++) outranks[i] = rank;
103595fce210SBarry Smith     ierr = PetscSFGatherBegin(bgcount,MPI_INT,outranks,inranks);CHKERRQ(ierr);
103695fce210SBarry Smith     ierr = PetscSFGatherEnd(bgcount,MPI_INT,outranks,inranks);CHKERRQ(ierr);
103795fce210SBarry Smith     ierr = MPI_Comm_group(PetscObjectComm((PetscObject)sf),&group);CHKERRQ(ierr);
103895fce210SBarry Smith     ierr = MPI_Group_incl(group,indegree[0],inranks,&sf->ingroup);CHKERRQ(ierr);
103995fce210SBarry Smith     ierr = MPI_Group_free(&group);CHKERRQ(ierr);
104095fce210SBarry Smith     ierr = PetscFree2(inranks,outranks);CHKERRQ(ierr);
104195fce210SBarry Smith     ierr = PetscSFDestroy(&bgcount);CHKERRQ(ierr);
104295fce210SBarry Smith   }
104395fce210SBarry Smith   *incoming = sf->ingroup;
104495fce210SBarry Smith 
104595fce210SBarry Smith   if (sf->outgroup == MPI_GROUP_NULL) {
104695fce210SBarry Smith     ierr = MPI_Comm_group(PetscObjectComm((PetscObject)sf),&group);CHKERRQ(ierr);
104795fce210SBarry Smith     ierr = MPI_Group_incl(group,sf->nranks,sf->ranks,&sf->outgroup);CHKERRQ(ierr);
104895fce210SBarry Smith     ierr = MPI_Group_free(&group);CHKERRQ(ierr);
104995fce210SBarry Smith   }
105095fce210SBarry Smith   *outgoing = sf->outgroup;
105195fce210SBarry Smith   PetscFunctionReturn(0);
105295fce210SBarry Smith }
105395fce210SBarry Smith 
105429046d53SLisandro Dalcin /*@
105595fce210SBarry Smith    PetscSFGetMultiSF - gets the inner SF implemeting gathers and scatters
105695fce210SBarry Smith 
105795fce210SBarry Smith    Collective
105895fce210SBarry Smith 
105995fce210SBarry Smith    Input Argument:
106095fce210SBarry Smith .  sf - star forest that may contain roots with 0 or with more than 1 vertex
106195fce210SBarry Smith 
106295fce210SBarry Smith    Output Arguments:
106395fce210SBarry Smith .  multi - star forest with split roots, such that each root has degree exactly 1
106495fce210SBarry Smith 
106595fce210SBarry Smith    Level: developer
106695fce210SBarry Smith 
106795fce210SBarry Smith    Notes:
106895fce210SBarry Smith 
106995fce210SBarry Smith    In most cases, users should use PetscSFGatherBegin() and PetscSFScatterBegin() instead of manipulating multi
107095fce210SBarry Smith    directly. Since multi satisfies the stronger condition that each entry in the global space has exactly one incoming
107195fce210SBarry Smith    edge, it is a candidate for future optimization that might involve its removal.
107295fce210SBarry Smith 
1073673100f5SVaclav Hapla .seealso: PetscSFSetGraph(), PetscSFGatherBegin(), PetscSFScatterBegin(), PetscSFComputeMultiRootOriginalNumbering()
107495fce210SBarry Smith @*/
107595fce210SBarry Smith PetscErrorCode PetscSFGetMultiSF(PetscSF sf,PetscSF *multi)
107695fce210SBarry Smith {
107795fce210SBarry Smith   PetscErrorCode ierr;
107895fce210SBarry Smith 
107995fce210SBarry Smith   PetscFunctionBegin;
108095fce210SBarry Smith   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
108195fce210SBarry Smith   PetscValidPointer(multi,2);
108295fce210SBarry Smith   if (sf->nroots < 0) {         /* Graph has not been set yet; why do we need this? */
108395fce210SBarry Smith     ierr   = PetscSFDuplicate(sf,PETSCSF_DUPLICATE_RANKS,&sf->multi);CHKERRQ(ierr);
108495fce210SBarry Smith     *multi = sf->multi;
108595fce210SBarry Smith     PetscFunctionReturn(0);
108695fce210SBarry Smith   }
108795fce210SBarry Smith   if (!sf->multi) {
108895fce210SBarry Smith     const PetscInt *indegree;
10899837ea96SMatthew G. Knepley     PetscInt       i,*inoffset,*outones,*outoffset,maxlocal;
109095fce210SBarry Smith     PetscSFNode    *remote;
109129046d53SLisandro Dalcin     maxlocal = sf->maxleaf+1; /* TODO: We should use PetscSFGetLeafRange() */
109295fce210SBarry Smith     ierr = PetscSFComputeDegreeBegin(sf,&indegree);CHKERRQ(ierr);
109395fce210SBarry Smith     ierr = PetscSFComputeDegreeEnd(sf,&indegree);CHKERRQ(ierr);
10949837ea96SMatthew G. Knepley     ierr = PetscMalloc3(sf->nroots+1,&inoffset,maxlocal,&outones,maxlocal,&outoffset);CHKERRQ(ierr);
109595fce210SBarry Smith     inoffset[0] = 0;
109695fce210SBarry Smith     for (i=0; i<sf->nroots; i++) inoffset[i+1] = inoffset[i] + indegree[i];
10979837ea96SMatthew G. Knepley     for (i=0; i<maxlocal; i++) outones[i] = 1;
1098dbd2ff41SBarry Smith     ierr = PetscSFFetchAndOpBegin(sf,MPIU_INT,inoffset,outones,outoffset,MPI_SUM);CHKERRQ(ierr);
1099dbd2ff41SBarry Smith     ierr = PetscSFFetchAndOpEnd(sf,MPIU_INT,inoffset,outones,outoffset,MPI_SUM);CHKERRQ(ierr);
110095fce210SBarry Smith     for (i=0; i<sf->nroots; i++) inoffset[i] -= indegree[i]; /* Undo the increment */
110195fce210SBarry Smith #if 0
110295fce210SBarry Smith #if defined(PETSC_USE_DEBUG)                                 /* Check that the expected number of increments occurred */
110395fce210SBarry Smith     for (i=0; i<sf->nroots; i++) {
110495fce210SBarry Smith       if (inoffset[i] + indegree[i] != inoffset[i+1]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect result after PetscSFFetchAndOp");
110595fce210SBarry Smith     }
110695fce210SBarry Smith #endif
110795fce210SBarry Smith #endif
1108785e854fSJed Brown     ierr = PetscMalloc1(sf->nleaves,&remote);CHKERRQ(ierr);
110995fce210SBarry Smith     for (i=0; i<sf->nleaves; i++) {
111095fce210SBarry Smith       remote[i].rank  = sf->remote[i].rank;
111138e7336fSToby Isaac       remote[i].index = outoffset[sf->mine ? sf->mine[i] : i];
111295fce210SBarry Smith     }
111395fce210SBarry Smith     ierr = PetscSFDuplicate(sf,PETSCSF_DUPLICATE_RANKS,&sf->multi);CHKERRQ(ierr);
111401365b40SToby Isaac     ierr = PetscSFSetGraph(sf->multi,inoffset[sf->nroots],sf->nleaves,sf->mine,PETSC_COPY_VALUES,remote,PETSC_OWN_POINTER);CHKERRQ(ierr);
111595fce210SBarry Smith     if (sf->rankorder) {        /* Sort the ranks */
111695fce210SBarry Smith       PetscMPIInt rank;
111795fce210SBarry Smith       PetscInt    *inranks,*newoffset,*outranks,*newoutoffset,*tmpoffset,maxdegree;
111895fce210SBarry Smith       PetscSFNode *newremote;
111995fce210SBarry Smith       ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)sf),&rank);CHKERRQ(ierr);
112095fce210SBarry Smith       for (i=0,maxdegree=0; i<sf->nroots; i++) maxdegree = PetscMax(maxdegree,indegree[i]);
11219837ea96SMatthew G. Knepley       ierr = PetscMalloc5(sf->multi->nroots,&inranks,sf->multi->nroots,&newoffset,maxlocal,&outranks,maxlocal,&newoutoffset,maxdegree,&tmpoffset);CHKERRQ(ierr);
11229837ea96SMatthew G. Knepley       for (i=0; i<maxlocal; i++) outranks[i] = rank;
11238bfbc91cSJed Brown       ierr = PetscSFReduceBegin(sf->multi,MPIU_INT,outranks,inranks,MPIU_REPLACE);CHKERRQ(ierr);
11248bfbc91cSJed Brown       ierr = PetscSFReduceEnd(sf->multi,MPIU_INT,outranks,inranks,MPIU_REPLACE);CHKERRQ(ierr);
112595fce210SBarry Smith       /* Sort the incoming ranks at each vertex, build the inverse map */
112695fce210SBarry Smith       for (i=0; i<sf->nroots; i++) {
112795fce210SBarry Smith         PetscInt j;
112895fce210SBarry Smith         for (j=0; j<indegree[i]; j++) tmpoffset[j] = j;
112995fce210SBarry Smith         ierr = PetscSortIntWithArray(indegree[i],inranks+inoffset[i],tmpoffset);CHKERRQ(ierr);
113095fce210SBarry Smith         for (j=0; j<indegree[i]; j++) newoffset[inoffset[i] + tmpoffset[j]] = inoffset[i] + j;
113195fce210SBarry Smith       }
113295fce210SBarry Smith       ierr = PetscSFBcastBegin(sf->multi,MPIU_INT,newoffset,newoutoffset);CHKERRQ(ierr);
113395fce210SBarry Smith       ierr = PetscSFBcastEnd(sf->multi,MPIU_INT,newoffset,newoutoffset);CHKERRQ(ierr);
1134785e854fSJed Brown       ierr = PetscMalloc1(sf->nleaves,&newremote);CHKERRQ(ierr);
113595fce210SBarry Smith       for (i=0; i<sf->nleaves; i++) {
113695fce210SBarry Smith         newremote[i].rank  = sf->remote[i].rank;
113701365b40SToby Isaac         newremote[i].index = newoutoffset[sf->mine ? sf->mine[i] : i];
113895fce210SBarry Smith       }
113901365b40SToby Isaac       ierr = PetscSFSetGraph(sf->multi,inoffset[sf->nroots],sf->nleaves,sf->mine,PETSC_COPY_VALUES,newremote,PETSC_OWN_POINTER);CHKERRQ(ierr);
114095fce210SBarry Smith       ierr = PetscFree5(inranks,newoffset,outranks,newoutoffset,tmpoffset);CHKERRQ(ierr);
114195fce210SBarry Smith     }
114295fce210SBarry Smith     ierr = PetscFree3(inoffset,outones,outoffset);CHKERRQ(ierr);
114395fce210SBarry Smith   }
114495fce210SBarry Smith   *multi = sf->multi;
114595fce210SBarry Smith   PetscFunctionReturn(0);
114695fce210SBarry Smith }
114795fce210SBarry Smith 
114895fce210SBarry Smith /*@C
114995fce210SBarry Smith    PetscSFCreateEmbeddedSF - removes edges from all but the selected roots, does not remap indices
115095fce210SBarry Smith 
115195fce210SBarry Smith    Collective
115295fce210SBarry Smith 
115395fce210SBarry Smith    Input Arguments:
115495fce210SBarry Smith +  sf - original star forest
1155ba2a7774SJunchao Zhang .  nselected  - number of selected roots on this process
1156ba2a7774SJunchao Zhang -  selected   - indices of the selected roots on this process
115795fce210SBarry Smith 
115895fce210SBarry Smith    Output Arguments:
115995fce210SBarry Smith .  newsf - new star forest
116095fce210SBarry Smith 
116195fce210SBarry Smith    Level: advanced
116295fce210SBarry Smith 
116395fce210SBarry Smith    Note:
116495fce210SBarry Smith    To use the new PetscSF, it may be necessary to know the indices of the leaves that are still participating. This can
116595fce210SBarry Smith    be done by calling PetscSFGetGraph().
116695fce210SBarry Smith 
116795fce210SBarry Smith .seealso: PetscSFSetGraph(), PetscSFGetGraph()
116895fce210SBarry Smith @*/
1169ba2a7774SJunchao Zhang PetscErrorCode PetscSFCreateEmbeddedSF(PetscSF sf,PetscInt nselected,const PetscInt *selected,PetscSF *newsf)
117095fce210SBarry Smith {
1171f659e5c7SJunchao Zhang   PetscInt          i,n,*roots,*rootdata,*leafdata,nroots,nleaves,connected_leaves,*new_ilocal;
1172ba2a7774SJunchao Zhang   const PetscSFNode *iremote;
1173f659e5c7SJunchao Zhang   PetscSFNode       *new_iremote;
1174ba2a7774SJunchao Zhang   PetscSF           tmpsf;
1175f659e5c7SJunchao Zhang   MPI_Comm          comm;
11760511a646SMatthew G. Knepley   PetscErrorCode    ierr;
117795fce210SBarry Smith 
117895fce210SBarry Smith   PetscFunctionBegin;
117995fce210SBarry Smith   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
118029046d53SLisandro Dalcin   PetscSFCheckGraphSet(sf,1);
1181ba2a7774SJunchao Zhang   if (nselected) PetscValidPointer(selected,3);
118295fce210SBarry Smith   PetscValidPointer(newsf,4);
11830511a646SMatthew G. Knepley 
1184f659e5c7SJunchao Zhang   ierr = PetscSFSetUp(sf);CHKERRQ(ierr);
1185*140a1472SStefano Zampini   ierr = PetscLogEventBegin(PETSCSF_EmbedSF,sf,0,0,0);CHKERRQ(ierr);
1186f659e5c7SJunchao Zhang   /* Uniq selected[] and put results in roots[] */
1187f659e5c7SJunchao Zhang   ierr = PetscObjectGetComm((PetscObject)sf,&comm);CHKERRQ(ierr);
1188f659e5c7SJunchao Zhang   ierr = PetscMalloc1(nselected,&roots);CHKERRQ(ierr);
1189dd5b3ca6SJunchao Zhang   ierr = PetscArraycpy(roots,selected,nselected);CHKERRQ(ierr);
1190f659e5c7SJunchao Zhang   ierr = PetscSortedRemoveDupsInt(&nselected,roots);CHKERRQ(ierr);
1191f659e5c7SJunchao Zhang   if (nselected && (roots[0] < 0 || roots[nselected-1] >= sf->nroots)) SETERRQ3(comm,PETSC_ERR_ARG_OUTOFRANGE,"Min/Max root indices %D/%D are not in [0,%D)",roots[0],roots[nselected-1],sf->nroots);
1192f659e5c7SJunchao Zhang 
1193f659e5c7SJunchao Zhang   if (sf->ops->CreateEmbeddedSF) {
1194f659e5c7SJunchao Zhang     ierr = (*sf->ops->CreateEmbeddedSF)(sf,nselected,roots,newsf);CHKERRQ(ierr);
1195f659e5c7SJunchao Zhang   } else {
1196f659e5c7SJunchao Zhang     /* A generic version of creating embedded sf. Note that we called PetscSFSetGraph() twice, which is certainly expensive */
1197ba2a7774SJunchao Zhang     /* Find out which leaves (not leaf data items) are still connected to roots in the embedded sf */
1198f659e5c7SJunchao Zhang     ierr = PetscSFGetGraph(sf,&nroots,&nleaves,NULL,&iremote);CHKERRQ(ierr);
1199ba2a7774SJunchao Zhang     ierr = PetscSFDuplicate(sf,PETSCSF_DUPLICATE_RANKS,&tmpsf);CHKERRQ(ierr);
1200ba2a7774SJunchao Zhang     ierr = PetscSFSetGraph(tmpsf,nroots,nleaves,NULL/*contiguous*/,PETSC_USE_POINTER,iremote,PETSC_USE_POINTER);CHKERRQ(ierr);
1201ba2a7774SJunchao Zhang     ierr = PetscCalloc2(nroots,&rootdata,nleaves,&leafdata);CHKERRQ(ierr);
1202f659e5c7SJunchao Zhang     for (i=0; i<nselected; ++i) rootdata[roots[i]] = 1;
1203ba2a7774SJunchao Zhang     ierr = PetscSFBcastBegin(tmpsf,MPIU_INT,rootdata,leafdata);CHKERRQ(ierr);
1204ba2a7774SJunchao Zhang     ierr = PetscSFBcastEnd(tmpsf,MPIU_INT,rootdata,leafdata);CHKERRQ(ierr);
1205ba2a7774SJunchao Zhang     ierr = PetscSFDestroy(&tmpsf);CHKERRQ(ierr);
1206ba2a7774SJunchao Zhang 
1207ba2a7774SJunchao Zhang     /* Build newsf with leaves that are still connected */
1208f659e5c7SJunchao Zhang     connected_leaves = 0;
1209f659e5c7SJunchao Zhang     for (i=0; i<nleaves; ++i) connected_leaves += leafdata[i];
1210f659e5c7SJunchao Zhang     ierr = PetscMalloc1(connected_leaves,&new_ilocal);CHKERRQ(ierr);
1211f659e5c7SJunchao Zhang     ierr = PetscMalloc1(connected_leaves,&new_iremote);CHKERRQ(ierr);
1212ba2a7774SJunchao Zhang     for (i=0, n=0; i<nleaves; ++i) {
1213ba2a7774SJunchao Zhang       if (leafdata[i]) {
1214ba2a7774SJunchao Zhang         new_ilocal[n]        = sf->mine ? sf->mine[i] : i;
1215ba2a7774SJunchao Zhang         new_iremote[n].rank  = sf->remote[i].rank;
1216ba2a7774SJunchao Zhang         new_iremote[n].index = sf->remote[i].index;
1217fc1ede2bSMatthew G. Knepley         ++n;
121895fce210SBarry Smith       }
121995fce210SBarry Smith     }
1220f659e5c7SJunchao Zhang 
1221f659e5c7SJunchao Zhang     if (n != connected_leaves) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_PLIB,"There is a size mismatch in the SF embedding, %d != %d",n,connected_leaves);
1222f659e5c7SJunchao Zhang     ierr = PetscSFCreate(comm,newsf);CHKERRQ(ierr);
1223f659e5c7SJunchao Zhang     ierr = PetscSFSetFromOptions(*newsf);CHKERRQ(ierr);
1224f659e5c7SJunchao Zhang     ierr = PetscSFSetGraph(*newsf,nroots,connected_leaves,new_ilocal,PETSC_OWN_POINTER,new_iremote,PETSC_OWN_POINTER);CHKERRQ(ierr);
122595fce210SBarry Smith     ierr = PetscFree2(rootdata,leafdata);CHKERRQ(ierr);
1226f659e5c7SJunchao Zhang   }
1227f659e5c7SJunchao Zhang   ierr = PetscFree(roots);CHKERRQ(ierr);
1228*140a1472SStefano Zampini   ierr = PetscSFSetUp(*newsf);CHKERRQ(ierr);
1229*140a1472SStefano Zampini   ierr = PetscLogEventEnd(PETSCSF_EmbedSF,sf,0,0,0);CHKERRQ(ierr);
123095fce210SBarry Smith   PetscFunctionReturn(0);
123195fce210SBarry Smith }
123295fce210SBarry Smith 
12332f5fb4c2SMatthew G. Knepley /*@C
12342f5fb4c2SMatthew G. Knepley   PetscSFCreateEmbeddedLeafSF - removes edges from all but the selected leaves, does not remap indices
12352f5fb4c2SMatthew G. Knepley 
12362f5fb4c2SMatthew G. Knepley   Collective
12372f5fb4c2SMatthew G. Knepley 
12382f5fb4c2SMatthew G. Knepley   Input Arguments:
12392f5fb4c2SMatthew G. Knepley + sf - original star forest
1240f659e5c7SJunchao Zhang . nselected  - number of selected leaves on this process
1241f659e5c7SJunchao Zhang - selected   - indices of the selected leaves on this process
12422f5fb4c2SMatthew G. Knepley 
12432f5fb4c2SMatthew G. Knepley   Output Arguments:
12442f5fb4c2SMatthew G. Knepley .  newsf - new star forest
12452f5fb4c2SMatthew G. Knepley 
12462f5fb4c2SMatthew G. Knepley   Level: advanced
12472f5fb4c2SMatthew G. Knepley 
12482f5fb4c2SMatthew G. Knepley .seealso: PetscSFCreateEmbeddedSF(), PetscSFSetGraph(), PetscSFGetGraph()
12492f5fb4c2SMatthew G. Knepley @*/
1250f659e5c7SJunchao Zhang PetscErrorCode PetscSFCreateEmbeddedLeafSF(PetscSF sf,PetscInt nselected,const PetscInt *selected,PetscSF *newsf)
12512f5fb4c2SMatthew G. Knepley {
1252f659e5c7SJunchao Zhang   const PetscSFNode *iremote;
1253f659e5c7SJunchao Zhang   PetscSFNode       *new_iremote;
1254f659e5c7SJunchao Zhang   const PetscInt    *ilocal;
1255f659e5c7SJunchao Zhang   PetscInt          i,nroots,*leaves,*new_ilocal;
1256f659e5c7SJunchao Zhang   MPI_Comm          comm;
12572f5fb4c2SMatthew G. Knepley   PetscErrorCode    ierr;
12582f5fb4c2SMatthew G. Knepley 
12592f5fb4c2SMatthew G. Knepley   PetscFunctionBegin;
12602f5fb4c2SMatthew G. Knepley   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
126129046d53SLisandro Dalcin   PetscSFCheckGraphSet(sf,1);
1262f659e5c7SJunchao Zhang   if (nselected) PetscValidPointer(selected,3);
12632f5fb4c2SMatthew G. Knepley   PetscValidPointer(newsf,4);
12642f5fb4c2SMatthew G. Knepley 
1265f659e5c7SJunchao Zhang   /* Uniq selected[] and put results in leaves[] */
1266f659e5c7SJunchao Zhang   ierr = PetscObjectGetComm((PetscObject)sf,&comm);CHKERRQ(ierr);
1267f659e5c7SJunchao Zhang   ierr = PetscMalloc1(nselected,&leaves);CHKERRQ(ierr);
1268dd5b3ca6SJunchao Zhang   ierr = PetscArraycpy(leaves,selected,nselected);CHKERRQ(ierr);
1269f659e5c7SJunchao Zhang   ierr = PetscSortedRemoveDupsInt(&nselected,leaves);CHKERRQ(ierr);
1270f659e5c7SJunchao Zhang   if (nselected && (leaves[0] < 0 || leaves[nselected-1] >= sf->nleaves)) SETERRQ3(comm,PETSC_ERR_ARG_OUTOFRANGE,"Min/Max leaf indices %D/%D are not in [0,%D)",leaves[0],leaves[nselected-1],sf->nleaves);
1271f659e5c7SJunchao Zhang 
1272f659e5c7SJunchao Zhang   /* Optimize the routine only when sf is setup and hence we can reuse sf's communication pattern */
1273f659e5c7SJunchao Zhang   if (sf->setupcalled && sf->ops->CreateEmbeddedLeafSF) {
1274f659e5c7SJunchao Zhang     ierr = (*sf->ops->CreateEmbeddedLeafSF)(sf,nselected,leaves,newsf);CHKERRQ(ierr);
1275f659e5c7SJunchao Zhang   } else {
1276f659e5c7SJunchao Zhang     ierr = PetscSFGetGraph(sf,&nroots,NULL,&ilocal,&iremote);CHKERRQ(ierr);
1277f659e5c7SJunchao Zhang     ierr = PetscMalloc1(nselected,&new_ilocal);CHKERRQ(ierr);
1278f659e5c7SJunchao Zhang     ierr = PetscMalloc1(nselected,&new_iremote);CHKERRQ(ierr);
1279f659e5c7SJunchao Zhang     for (i=0; i<nselected; ++i) {
1280f659e5c7SJunchao Zhang       const PetscInt l     = leaves[i];
1281f659e5c7SJunchao Zhang       new_ilocal[i]        = ilocal ? ilocal[l] : l;
1282f659e5c7SJunchao Zhang       new_iremote[i].rank  = iremote[l].rank;
1283f659e5c7SJunchao Zhang       new_iremote[i].index = iremote[l].index;
12842f5fb4c2SMatthew G. Knepley     }
1285f659e5c7SJunchao Zhang     ierr = PetscSFCreate(comm,newsf);CHKERRQ(ierr);
1286f659e5c7SJunchao Zhang     ierr = PetscSFSetFromOptions(*newsf);CHKERRQ(ierr);
1287f659e5c7SJunchao Zhang     ierr = PetscSFSetGraph(*newsf,nroots,nselected,new_ilocal,PETSC_OWN_POINTER,new_iremote,PETSC_OWN_POINTER);CHKERRQ(ierr);
1288f659e5c7SJunchao Zhang   }
1289f659e5c7SJunchao Zhang   ierr = PetscFree(leaves);CHKERRQ(ierr);
12902f5fb4c2SMatthew G. Knepley   PetscFunctionReturn(0);
12912f5fb4c2SMatthew G. Knepley }
12922f5fb4c2SMatthew G. Knepley 
129395fce210SBarry Smith /*@C
12943482bfa8SJunchao Zhang    PetscSFBcastAndOpBegin - begin pointwise broadcast with root value being reduced to leaf value, to be concluded with call to PetscSFBcastAndOpEnd()
12953482bfa8SJunchao Zhang 
12963482bfa8SJunchao Zhang    Collective on PetscSF
12973482bfa8SJunchao Zhang 
12983482bfa8SJunchao Zhang    Input Arguments:
12993482bfa8SJunchao Zhang +  sf - star forest on which to communicate
13003482bfa8SJunchao Zhang .  unit - data type associated with each node
13013482bfa8SJunchao Zhang .  rootdata - buffer to broadcast
13023482bfa8SJunchao Zhang -  op - operation to use for reduction
13033482bfa8SJunchao Zhang 
13043482bfa8SJunchao Zhang    Output Arguments:
13053482bfa8SJunchao Zhang .  leafdata - buffer to be reduced with values from each leaf's respective root
13063482bfa8SJunchao Zhang 
13073482bfa8SJunchao Zhang    Level: intermediate
13083482bfa8SJunchao Zhang 
13093482bfa8SJunchao Zhang .seealso: PetscSFBcastAndOpEnd(), PetscSFBcastBegin(), PetscSFBcastEnd()
13103482bfa8SJunchao Zhang @*/
13113482bfa8SJunchao Zhang PetscErrorCode PetscSFBcastAndOpBegin(PetscSF sf,MPI_Datatype unit,const void *rootdata,void *leafdata,MPI_Op op)
13123482bfa8SJunchao Zhang {
13133482bfa8SJunchao Zhang   PetscErrorCode ierr;
1314eb02082bSJunchao Zhang   PetscMemType   rootmtype,leafmtype;
13153482bfa8SJunchao Zhang 
13163482bfa8SJunchao Zhang   PetscFunctionBegin;
13173482bfa8SJunchao Zhang   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
13183482bfa8SJunchao Zhang   ierr = PetscSFSetUp(sf);CHKERRQ(ierr);
13193482bfa8SJunchao Zhang   ierr = PetscLogEventBegin(PETSCSF_BcastAndOpBegin,sf,0,0,0);CHKERRQ(ierr);
1320eb02082bSJunchao Zhang   ierr = PetscGetMemType(rootdata,&rootmtype);CHKERRQ(ierr);
1321eb02082bSJunchao Zhang   ierr = PetscGetMemType(leafdata,&leafmtype);CHKERRQ(ierr);
1322eb02082bSJunchao Zhang #if defined(PETSC_HAVE_CUDA)
1323eb02082bSJunchao Zhang   /*  Shall we assume rootdata, leafdata are ready to use (instead of being computed by some asynchronous kernels)?
1324eb02082bSJunchao Zhang     To be similar to MPI, I'd like to have this assumption, since MPI does not have a concept of stream.
1325eb02082bSJunchao Zhang     But currently this assumption is not enforecd in Petsc. To be safe, I do synchronization here. Otherwise, if
1326eb02082bSJunchao Zhang     we do not sync now and call the Pack kernel directly on the default NULL stream (assume petsc objects are also
1327eb02082bSJunchao Zhang     computed on it), we have to sync the NULL stream before calling MPI routines. So, it looks a cudaDeviceSynchronize
1328eb02082bSJunchao Zhang     is inevitable. We do it now and put pack/unpack kernels to non-NULL streams.
1329eb02082bSJunchao Zhang    */
1330eb02082bSJunchao Zhang   if (rootmtype == PETSC_MEMTYPE_DEVICE || leafmtype == PETSC_MEMTYPE_DEVICE) {cudaError_t err = cudaDeviceSynchronize();CHKERRCUDA(err);}
1331eb02082bSJunchao Zhang #endif
1332eb02082bSJunchao Zhang   ierr = (*sf->ops->BcastAndOpBegin)(sf,unit,rootmtype,rootdata,leafmtype,leafdata,op);CHKERRQ(ierr);
13333482bfa8SJunchao Zhang   ierr = PetscLogEventEnd(PETSCSF_BcastAndOpBegin,sf,0,0,0);CHKERRQ(ierr);
13343482bfa8SJunchao Zhang   PetscFunctionReturn(0);
13353482bfa8SJunchao Zhang }
13363482bfa8SJunchao Zhang 
13373482bfa8SJunchao Zhang /*@C
13383482bfa8SJunchao Zhang    PetscSFBcastAndOpEnd - end a broadcast & reduce operation started with PetscSFBcastAndOpBegin()
13393482bfa8SJunchao Zhang 
13403482bfa8SJunchao Zhang    Collective
13413482bfa8SJunchao Zhang 
13423482bfa8SJunchao Zhang    Input Arguments:
13433482bfa8SJunchao Zhang +  sf - star forest
13443482bfa8SJunchao Zhang .  unit - data type
13453482bfa8SJunchao Zhang .  rootdata - buffer to broadcast
13463482bfa8SJunchao Zhang -  op - operation to use for reduction
13473482bfa8SJunchao Zhang 
13483482bfa8SJunchao Zhang    Output Arguments:
13493482bfa8SJunchao Zhang .  leafdata - buffer to be reduced with values from each leaf's respective root
13503482bfa8SJunchao Zhang 
13513482bfa8SJunchao Zhang    Level: intermediate
13523482bfa8SJunchao Zhang 
13533482bfa8SJunchao Zhang .seealso: PetscSFSetGraph(), PetscSFReduceEnd()
13543482bfa8SJunchao Zhang @*/
13553482bfa8SJunchao Zhang PetscErrorCode PetscSFBcastAndOpEnd(PetscSF sf,MPI_Datatype unit,const void *rootdata,void *leafdata,MPI_Op op)
13563482bfa8SJunchao Zhang {
13573482bfa8SJunchao Zhang   PetscErrorCode ierr;
1358eb02082bSJunchao Zhang   PetscMemType   rootmtype,leafmtype;
13593482bfa8SJunchao Zhang 
13603482bfa8SJunchao Zhang   PetscFunctionBegin;
13613482bfa8SJunchao Zhang   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
13623482bfa8SJunchao Zhang   ierr = PetscSFSetUp(sf);CHKERRQ(ierr);
13633482bfa8SJunchao Zhang   ierr = PetscLogEventBegin(PETSCSF_BcastAndOpEnd,sf,0,0,0);CHKERRQ(ierr);
1364eb02082bSJunchao Zhang   ierr = PetscGetMemType(rootdata,&rootmtype);CHKERRQ(ierr);
1365eb02082bSJunchao Zhang   ierr = PetscGetMemType(leafdata,&leafmtype);CHKERRQ(ierr);
1366eb02082bSJunchao Zhang   ierr = (*sf->ops->BcastAndOpEnd)(sf,unit,rootmtype,rootdata,leafmtype,leafdata,op);CHKERRQ(ierr);
13673482bfa8SJunchao Zhang   ierr = PetscLogEventEnd(PETSCSF_BcastAndOpEnd,sf,0,0,0);CHKERRQ(ierr);
13683482bfa8SJunchao Zhang   PetscFunctionReturn(0);
13693482bfa8SJunchao Zhang }
13703482bfa8SJunchao Zhang 
13713482bfa8SJunchao Zhang /*@C
137295fce210SBarry Smith    PetscSFReduceBegin - begin reduction of leafdata into rootdata, to be completed with call to PetscSFReduceEnd()
137395fce210SBarry Smith 
137495fce210SBarry Smith    Collective
137595fce210SBarry Smith 
137695fce210SBarry Smith    Input Arguments:
137795fce210SBarry Smith +  sf - star forest
137895fce210SBarry Smith .  unit - data type
137995fce210SBarry Smith .  leafdata - values to reduce
138095fce210SBarry Smith -  op - reduction operation
138195fce210SBarry Smith 
138295fce210SBarry Smith    Output Arguments:
138395fce210SBarry Smith .  rootdata - result of reduction of values from all leaves of each root
138495fce210SBarry Smith 
138595fce210SBarry Smith    Level: intermediate
138695fce210SBarry Smith 
138795fce210SBarry Smith .seealso: PetscSFBcastBegin()
138895fce210SBarry Smith @*/
138995fce210SBarry Smith PetscErrorCode PetscSFReduceBegin(PetscSF sf,MPI_Datatype unit,const void *leafdata,void *rootdata,MPI_Op op)
139095fce210SBarry Smith {
139195fce210SBarry Smith   PetscErrorCode ierr;
1392eb02082bSJunchao Zhang   PetscMemType   rootmtype,leafmtype;
139395fce210SBarry Smith 
139495fce210SBarry Smith   PetscFunctionBegin;
139595fce210SBarry Smith   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
139695fce210SBarry Smith   ierr = PetscSFSetUp(sf);CHKERRQ(ierr);
139729046d53SLisandro Dalcin   ierr = PetscLogEventBegin(PETSCSF_ReduceBegin,sf,0,0,0);CHKERRQ(ierr);
1398eb02082bSJunchao Zhang   ierr = PetscGetMemType(rootdata,&rootmtype);CHKERRQ(ierr);
1399eb02082bSJunchao Zhang   ierr = PetscGetMemType(leafdata,&leafmtype);CHKERRQ(ierr);
1400eb02082bSJunchao Zhang #if defined(PETSC_HAVE_CUDA)
1401eb02082bSJunchao Zhang   if (rootmtype == PETSC_MEMTYPE_DEVICE || leafmtype == PETSC_MEMTYPE_DEVICE) {cudaError_t err = cudaDeviceSynchronize();CHKERRCUDA(err);}
1402eb02082bSJunchao Zhang #endif
1403eb02082bSJunchao Zhang   ierr = (sf->ops->ReduceBegin)(sf,unit,leafmtype,leafdata,rootmtype,rootdata,op);CHKERRQ(ierr);
1404563ffbabSMatthew G. Knepley   ierr = PetscLogEventEnd(PETSCSF_ReduceBegin,sf,0,0,0);CHKERRQ(ierr);
140595fce210SBarry Smith   PetscFunctionReturn(0);
140695fce210SBarry Smith }
140795fce210SBarry Smith 
140895fce210SBarry Smith /*@C
140995fce210SBarry Smith    PetscSFReduceEnd - end a reduction operation started with PetscSFReduceBegin()
141095fce210SBarry Smith 
141195fce210SBarry Smith    Collective
141295fce210SBarry Smith 
141395fce210SBarry Smith    Input Arguments:
141495fce210SBarry Smith +  sf - star forest
141595fce210SBarry Smith .  unit - data type
141695fce210SBarry Smith .  leafdata - values to reduce
141795fce210SBarry Smith -  op - reduction operation
141895fce210SBarry Smith 
141995fce210SBarry Smith    Output Arguments:
142095fce210SBarry Smith .  rootdata - result of reduction of values from all leaves of each root
142195fce210SBarry Smith 
142295fce210SBarry Smith    Level: intermediate
142395fce210SBarry Smith 
142495fce210SBarry Smith .seealso: PetscSFSetGraph(), PetscSFBcastEnd()
142595fce210SBarry Smith @*/
142695fce210SBarry Smith PetscErrorCode PetscSFReduceEnd(PetscSF sf,MPI_Datatype unit,const void *leafdata,void *rootdata,MPI_Op op)
142795fce210SBarry Smith {
142895fce210SBarry Smith   PetscErrorCode ierr;
1429eb02082bSJunchao Zhang   PetscMemType   rootmtype,leafmtype;
143095fce210SBarry Smith 
143195fce210SBarry Smith   PetscFunctionBegin;
143295fce210SBarry Smith   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
143395fce210SBarry Smith   ierr = PetscSFSetUp(sf);CHKERRQ(ierr);
143429046d53SLisandro Dalcin   ierr = PetscLogEventBegin(PETSCSF_ReduceEnd,sf,0,0,0);CHKERRQ(ierr);
1435eb02082bSJunchao Zhang   ierr = PetscGetMemType(rootdata,&rootmtype);CHKERRQ(ierr);
1436eb02082bSJunchao Zhang   ierr = PetscGetMemType(leafdata,&leafmtype);CHKERRQ(ierr);
1437eb02082bSJunchao Zhang   ierr = (*sf->ops->ReduceEnd)(sf,unit,leafmtype,leafdata,rootmtype,rootdata,op);CHKERRQ(ierr);
1438563ffbabSMatthew G. Knepley   ierr = PetscLogEventEnd(PETSCSF_ReduceEnd,sf,0,0,0);CHKERRQ(ierr);
143995fce210SBarry Smith   PetscFunctionReturn(0);
144095fce210SBarry Smith }
144195fce210SBarry Smith 
144295fce210SBarry Smith /*@C
1443a1729e3fSJunchao Zhang    PetscSFFetchAndOpBegin - begin operation that fetches values from root and updates atomically by applying operation using my leaf value, to be completed with PetscSFFetchAndOpEnd()
1444a1729e3fSJunchao Zhang 
1445a1729e3fSJunchao Zhang    Collective
1446a1729e3fSJunchao Zhang 
1447a1729e3fSJunchao Zhang    Input Arguments:
1448a1729e3fSJunchao Zhang +  sf - star forest
1449a1729e3fSJunchao Zhang .  unit - data type
1450a1729e3fSJunchao Zhang .  leafdata - leaf values to use in reduction
1451a1729e3fSJunchao Zhang -  op - operation to use for reduction
1452a1729e3fSJunchao Zhang 
1453a1729e3fSJunchao Zhang    Output Arguments:
1454a1729e3fSJunchao Zhang +  rootdata - root values to be updated, input state is seen by first process to perform an update
1455a1729e3fSJunchao Zhang -  leafupdate - state at each leaf's respective root immediately prior to my atomic update
1456a1729e3fSJunchao Zhang 
1457a1729e3fSJunchao Zhang    Level: advanced
1458a1729e3fSJunchao Zhang 
1459a1729e3fSJunchao Zhang    Note:
1460a1729e3fSJunchao Zhang    The update is only atomic at the granularity provided by the hardware. Different roots referenced by the same process
1461a1729e3fSJunchao Zhang    might be updated in a different order. Furthermore, if a composite type is used for the unit datatype, atomicity is
1462a1729e3fSJunchao Zhang    not guaranteed across the whole vertex. Therefore, this function is mostly only used with primitive types such as
1463a1729e3fSJunchao Zhang    integers.
1464a1729e3fSJunchao Zhang 
1465a1729e3fSJunchao Zhang .seealso: PetscSFComputeDegreeBegin(), PetscSFReduceBegin(), PetscSFSetGraph()
1466a1729e3fSJunchao Zhang @*/
1467a1729e3fSJunchao Zhang PetscErrorCode PetscSFFetchAndOpBegin(PetscSF sf,MPI_Datatype unit,void *rootdata,const void *leafdata,void *leafupdate,MPI_Op op)
1468a1729e3fSJunchao Zhang {
1469a1729e3fSJunchao Zhang   PetscErrorCode ierr;
1470eb02082bSJunchao Zhang   PetscMemType   rootmtype,leafmtype,leafupdatemtype;
1471a1729e3fSJunchao Zhang 
1472a1729e3fSJunchao Zhang   PetscFunctionBegin;
1473a1729e3fSJunchao Zhang   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
1474a1729e3fSJunchao Zhang   ierr = PetscSFSetUp(sf);CHKERRQ(ierr);
1475a1729e3fSJunchao Zhang   ierr = PetscLogEventBegin(PETSCSF_FetchAndOpBegin,sf,0,0,0);CHKERRQ(ierr);
1476eb02082bSJunchao Zhang   ierr = PetscGetMemType(rootdata,&rootmtype);CHKERRQ(ierr);
1477eb02082bSJunchao Zhang   ierr = PetscGetMemType(leafdata,&leafmtype);CHKERRQ(ierr);
1478eb02082bSJunchao Zhang   ierr = PetscGetMemType(leafupdate,&leafupdatemtype);CHKERRQ(ierr);
1479eb02082bSJunchao Zhang   if (leafmtype != leafupdatemtype) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for leafdata and leafupdate in different memory types");
1480eb02082bSJunchao Zhang #if defined(PETSC_HAVE_CUDA)
1481eb02082bSJunchao Zhang   if (rootmtype == PETSC_MEMTYPE_DEVICE || leafmtype == PETSC_MEMTYPE_DEVICE) {cudaError_t err = cudaDeviceSynchronize();CHKERRCUDA(err);}
1482eb02082bSJunchao Zhang #endif
1483eb02082bSJunchao Zhang   ierr = (*sf->ops->FetchAndOpBegin)(sf,unit,rootmtype,rootdata,leafmtype,leafdata,leafupdate,op);CHKERRQ(ierr);
1484a1729e3fSJunchao Zhang   ierr = PetscLogEventEnd(PETSCSF_FetchAndOpBegin,sf,0,0,0);CHKERRQ(ierr);
1485a1729e3fSJunchao Zhang   PetscFunctionReturn(0);
1486a1729e3fSJunchao Zhang }
1487a1729e3fSJunchao Zhang 
1488a1729e3fSJunchao Zhang /*@C
1489a1729e3fSJunchao Zhang    PetscSFFetchAndOpEnd - end operation started in matching call to PetscSFFetchAndOpBegin() to fetch values from roots and update atomically by applying operation using my leaf value
1490a1729e3fSJunchao Zhang 
1491a1729e3fSJunchao Zhang    Collective
1492a1729e3fSJunchao Zhang 
1493a1729e3fSJunchao Zhang    Input Arguments:
1494a1729e3fSJunchao Zhang +  sf - star forest
1495a1729e3fSJunchao Zhang .  unit - data type
1496a1729e3fSJunchao Zhang .  leafdata - leaf values to use in reduction
1497a1729e3fSJunchao Zhang -  op - operation to use for reduction
1498a1729e3fSJunchao Zhang 
1499a1729e3fSJunchao Zhang    Output Arguments:
1500a1729e3fSJunchao Zhang +  rootdata - root values to be updated, input state is seen by first process to perform an update
1501a1729e3fSJunchao Zhang -  leafupdate - state at each leaf's respective root immediately prior to my atomic update
1502a1729e3fSJunchao Zhang 
1503a1729e3fSJunchao Zhang    Level: advanced
1504a1729e3fSJunchao Zhang 
1505a1729e3fSJunchao Zhang .seealso: PetscSFComputeDegreeEnd(), PetscSFReduceEnd(), PetscSFSetGraph()
1506a1729e3fSJunchao Zhang @*/
1507a1729e3fSJunchao Zhang PetscErrorCode PetscSFFetchAndOpEnd(PetscSF sf,MPI_Datatype unit,void *rootdata,const void *leafdata,void *leafupdate,MPI_Op op)
1508a1729e3fSJunchao Zhang {
1509a1729e3fSJunchao Zhang   PetscErrorCode ierr;
1510eb02082bSJunchao Zhang   PetscMemType   rootmtype,leafmtype,leafupdatemtype;
1511a1729e3fSJunchao Zhang 
1512a1729e3fSJunchao Zhang   PetscFunctionBegin;
1513a1729e3fSJunchao Zhang   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
1514a1729e3fSJunchao Zhang   ierr = PetscSFSetUp(sf);CHKERRQ(ierr);
1515a1729e3fSJunchao Zhang   ierr = PetscLogEventBegin(PETSCSF_FetchAndOpEnd,sf,0,0,0);CHKERRQ(ierr);
1516eb02082bSJunchao Zhang   ierr = PetscGetMemType(rootdata,&rootmtype);CHKERRQ(ierr);
1517eb02082bSJunchao Zhang   ierr = PetscGetMemType(leafdata,&leafmtype);CHKERRQ(ierr);
1518eb02082bSJunchao Zhang   ierr = PetscGetMemType(leafupdate,&leafupdatemtype);CHKERRQ(ierr);
1519eb02082bSJunchao Zhang   if (leafmtype != leafupdatemtype) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"No support for leafdata and leafupdate in different memory types");
1520eb02082bSJunchao Zhang   ierr = (*sf->ops->FetchAndOpEnd)(sf,unit,rootmtype,rootdata,leafmtype,leafdata,leafupdate,op);CHKERRQ(ierr);
1521a1729e3fSJunchao Zhang   ierr = PetscLogEventEnd(PETSCSF_FetchAndOpEnd,sf,0,0,0);CHKERRQ(ierr);
1522a1729e3fSJunchao Zhang   PetscFunctionReturn(0);
1523a1729e3fSJunchao Zhang }
1524a1729e3fSJunchao Zhang 
1525a1729e3fSJunchao Zhang /*@C
152695fce210SBarry Smith    PetscSFComputeDegreeBegin - begin computation of degree for each root vertex, to be completed with PetscSFComputeDegreeEnd()
152795fce210SBarry Smith 
152895fce210SBarry Smith    Collective
152995fce210SBarry Smith 
153095fce210SBarry Smith    Input Arguments:
153195fce210SBarry Smith .  sf - star forest
153295fce210SBarry Smith 
153395fce210SBarry Smith    Output Arguments:
153495fce210SBarry Smith .  degree - degree of each root vertex
153595fce210SBarry Smith 
153695fce210SBarry Smith    Level: advanced
153795fce210SBarry Smith 
1538ffe67aa5SVáclav Hapla    Notes:
1539ffe67aa5SVáclav Hapla    The returned array is owned by PetscSF and automatically freed by PetscSFDestroy(). Hence no need to call PetscFree() on it.
1540ffe67aa5SVáclav Hapla 
154195fce210SBarry Smith .seealso: PetscSFGatherBegin()
154295fce210SBarry Smith @*/
154395fce210SBarry Smith PetscErrorCode PetscSFComputeDegreeBegin(PetscSF sf,const PetscInt **degree)
154495fce210SBarry Smith {
154595fce210SBarry Smith   PetscErrorCode ierr;
154695fce210SBarry Smith 
154795fce210SBarry Smith   PetscFunctionBegin;
154895fce210SBarry Smith   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
154995fce210SBarry Smith   PetscSFCheckGraphSet(sf,1);
155095fce210SBarry Smith   PetscValidPointer(degree,2);
1551803bd9e8SMatthew G. Knepley   if (!sf->degreeknown) {
155229046d53SLisandro Dalcin     PetscInt i, nroots = sf->nroots, maxlocal = sf->maxleaf+1;  /* TODO: We should use PetscSFGetLeafRange() */
1553803bd9e8SMatthew G. Knepley     if (sf->degree) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Calls to PetscSFComputeDegreeBegin() cannot be nested.");
155429046d53SLisandro Dalcin     ierr = PetscMalloc1(nroots,&sf->degree);CHKERRQ(ierr);
155529046d53SLisandro Dalcin     ierr = PetscMalloc1(PetscMax(maxlocal,1),&sf->degreetmp);CHKERRQ(ierr); /* allocate at least one entry, see check in PetscSFComputeDegreeEnd() */
155629046d53SLisandro Dalcin     for (i=0; i<nroots; i++) sf->degree[i] = 0;
15579837ea96SMatthew G. Knepley     for (i=0; i<maxlocal; i++) sf->degreetmp[i] = 1;
1558dbd2ff41SBarry Smith     ierr = PetscSFReduceBegin(sf,MPIU_INT,sf->degreetmp,sf->degree,MPI_SUM);CHKERRQ(ierr);
155995fce210SBarry Smith   }
156095fce210SBarry Smith   *degree = NULL;
156195fce210SBarry Smith   PetscFunctionReturn(0);
156295fce210SBarry Smith }
156395fce210SBarry Smith 
156495fce210SBarry Smith /*@C
156595fce210SBarry Smith    PetscSFComputeDegreeEnd - complete computation of degree for each root vertex, started with PetscSFComputeDegreeBegin()
156695fce210SBarry Smith 
156795fce210SBarry Smith    Collective
156895fce210SBarry Smith 
156995fce210SBarry Smith    Input Arguments:
157095fce210SBarry Smith .  sf - star forest
157195fce210SBarry Smith 
157295fce210SBarry Smith    Output Arguments:
157395fce210SBarry Smith .  degree - degree of each root vertex
157495fce210SBarry Smith 
157595fce210SBarry Smith    Level: developer
157695fce210SBarry Smith 
1577ffe67aa5SVáclav Hapla    Notes:
1578ffe67aa5SVáclav Hapla    The returned array is owned by PetscSF and automatically freed by PetscSFDestroy(). Hence no need to call PetscFree() on it.
1579ffe67aa5SVáclav Hapla 
158095fce210SBarry Smith .seealso:
158195fce210SBarry Smith @*/
158295fce210SBarry Smith PetscErrorCode PetscSFComputeDegreeEnd(PetscSF sf,const PetscInt **degree)
158395fce210SBarry Smith {
158495fce210SBarry Smith   PetscErrorCode ierr;
158595fce210SBarry Smith 
158695fce210SBarry Smith   PetscFunctionBegin;
158795fce210SBarry Smith   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
158895fce210SBarry Smith   PetscSFCheckGraphSet(sf,1);
158929046d53SLisandro Dalcin   PetscValidPointer(degree,2);
159095fce210SBarry Smith   if (!sf->degreeknown) {
159129046d53SLisandro Dalcin     if (!sf->degreetmp) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Must call PetscSFComputeDegreeBegin() before PetscSFComputeDegreeEnd()");
1592dbd2ff41SBarry Smith     ierr = PetscSFReduceEnd(sf,MPIU_INT,sf->degreetmp,sf->degree,MPI_SUM);CHKERRQ(ierr);
159395fce210SBarry Smith     ierr = PetscFree(sf->degreetmp);CHKERRQ(ierr);
159495fce210SBarry Smith     sf->degreeknown = PETSC_TRUE;
159595fce210SBarry Smith   }
159695fce210SBarry Smith   *degree = sf->degree;
159795fce210SBarry Smith   PetscFunctionReturn(0);
159895fce210SBarry Smith }
159995fce210SBarry Smith 
1600673100f5SVaclav Hapla 
1601673100f5SVaclav Hapla /*@C
160266dfcd1aSVaclav Hapla    PetscSFComputeMultiRootOriginalNumbering - Returns original numbering of multi-roots (roots of multi-SF returned by PetscSFGetMultiSF()).
160366dfcd1aSVaclav Hapla    Each multi-root is assigned index of the corresponding original root.
1604673100f5SVaclav Hapla 
1605673100f5SVaclav Hapla    Collective
1606673100f5SVaclav Hapla 
1607673100f5SVaclav Hapla    Input Arguments:
1608673100f5SVaclav Hapla +  sf - star forest
1609673100f5SVaclav Hapla -  degree - degree of each root vertex, computed with PetscSFComputeDegreeBegin()/PetscSFComputeDegreeEnd()
1610673100f5SVaclav Hapla 
1611673100f5SVaclav Hapla    Output Arguments:
161266dfcd1aSVaclav Hapla +  nMultiRoots - (optional) number of multi-roots (roots of multi-SF)
161366dfcd1aSVaclav Hapla -  multiRootsOrigNumbering - original indices of multi-roots; length of this array is nMultiRoots
1614673100f5SVaclav Hapla 
1615673100f5SVaclav Hapla    Level: developer
1616673100f5SVaclav Hapla 
1617ffe67aa5SVáclav Hapla    Notes:
1618ffe67aa5SVáclav Hapla    The returned array multiRootsOrigNumbering is newly allocated and should be destroyed with PetscFree() when no longer needed.
1619ffe67aa5SVáclav Hapla 
1620673100f5SVaclav Hapla .seealso: PetscSFComputeDegreeBegin(), PetscSFComputeDegreeEnd(), PetscSFGetMultiSF()
1621673100f5SVaclav Hapla @*/
162266dfcd1aSVaclav Hapla PetscErrorCode PetscSFComputeMultiRootOriginalNumbering(PetscSF sf, const PetscInt degree[], PetscInt *nMultiRoots, PetscInt *multiRootsOrigNumbering[])
1623673100f5SVaclav Hapla {
1624673100f5SVaclav Hapla   PetscSF             msf;
1625673100f5SVaclav Hapla   PetscInt            i, j, k, nroots, nmroots;
1626673100f5SVaclav Hapla   PetscErrorCode      ierr;
1627673100f5SVaclav Hapla 
1628673100f5SVaclav Hapla   PetscFunctionBegin;
1629673100f5SVaclav Hapla   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
1630673100f5SVaclav Hapla   ierr = PetscSFGetGraph(sf, &nroots, NULL, NULL, NULL);CHKERRQ(ierr);
163129328920SVaclav Hapla   if (nroots) PetscValidIntPointer(degree,2);
163266dfcd1aSVaclav Hapla   if (nMultiRoots) PetscValidIntPointer(nMultiRoots,3);
163366dfcd1aSVaclav Hapla   PetscValidPointer(multiRootsOrigNumbering,4);
1634673100f5SVaclav Hapla   ierr = PetscSFGetMultiSF(sf,&msf);CHKERRQ(ierr);
1635673100f5SVaclav Hapla   ierr = PetscSFGetGraph(msf, &nmroots, NULL, NULL, NULL);CHKERRQ(ierr);
163666dfcd1aSVaclav Hapla   ierr = PetscMalloc1(nmroots, multiRootsOrigNumbering);CHKERRQ(ierr);
1637673100f5SVaclav Hapla   for (i=0,j=0,k=0; i<nroots; i++) {
1638673100f5SVaclav Hapla     if (!degree[i]) continue;
1639673100f5SVaclav Hapla     for (j=0; j<degree[i]; j++,k++) {
164066dfcd1aSVaclav Hapla       (*multiRootsOrigNumbering)[k] = i;
1641673100f5SVaclav Hapla     }
1642673100f5SVaclav Hapla   }
1643673100f5SVaclav Hapla #if defined(PETSC_USE_DEBUG)
1644673100f5SVaclav Hapla   if (PetscUnlikely(k != nmroots)) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"sanity check fail");
1645673100f5SVaclav Hapla #endif
164666dfcd1aSVaclav Hapla   if (nMultiRoots) *nMultiRoots = nmroots;
1647673100f5SVaclav Hapla   PetscFunctionReturn(0);
1648673100f5SVaclav Hapla }
1649673100f5SVaclav Hapla 
165095fce210SBarry Smith /*@C
165195fce210SBarry Smith    PetscSFGatherBegin - begin pointwise gather of all leaves into multi-roots, to be completed with PetscSFGatherEnd()
165295fce210SBarry Smith 
165395fce210SBarry Smith    Collective
165495fce210SBarry Smith 
165595fce210SBarry Smith    Input Arguments:
165695fce210SBarry Smith +  sf - star forest
165795fce210SBarry Smith .  unit - data type
165895fce210SBarry Smith -  leafdata - leaf data to gather to roots
165995fce210SBarry Smith 
166095fce210SBarry Smith    Output Argument:
166195fce210SBarry Smith .  multirootdata - root buffer to gather into, amount of space per root is equal to its degree
166295fce210SBarry Smith 
166395fce210SBarry Smith    Level: intermediate
166495fce210SBarry Smith 
166595fce210SBarry Smith .seealso: PetscSFComputeDegreeBegin(), PetscSFScatterBegin()
166695fce210SBarry Smith @*/
166795fce210SBarry Smith PetscErrorCode PetscSFGatherBegin(PetscSF sf,MPI_Datatype unit,const void *leafdata,void *multirootdata)
166895fce210SBarry Smith {
166995fce210SBarry Smith   PetscErrorCode ierr;
167095fce210SBarry Smith   PetscSF        multi;
167195fce210SBarry Smith 
167295fce210SBarry Smith   PetscFunctionBegin;
167395fce210SBarry Smith   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
167429046d53SLisandro Dalcin   ierr = PetscSFSetUp(sf);CHKERRQ(ierr);
167595fce210SBarry Smith   ierr = PetscSFGetMultiSF(sf,&multi);CHKERRQ(ierr);
16768bfbc91cSJed Brown   ierr = PetscSFReduceBegin(multi,unit,leafdata,multirootdata,MPIU_REPLACE);CHKERRQ(ierr);
167795fce210SBarry Smith   PetscFunctionReturn(0);
167895fce210SBarry Smith }
167995fce210SBarry Smith 
168095fce210SBarry Smith /*@C
168195fce210SBarry Smith    PetscSFGatherEnd - ends pointwise gather operation that was started with PetscSFGatherBegin()
168295fce210SBarry Smith 
168395fce210SBarry Smith    Collective
168495fce210SBarry Smith 
168595fce210SBarry Smith    Input Arguments:
168695fce210SBarry Smith +  sf - star forest
168795fce210SBarry Smith .  unit - data type
168895fce210SBarry Smith -  leafdata - leaf data to gather to roots
168995fce210SBarry Smith 
169095fce210SBarry Smith    Output Argument:
169195fce210SBarry Smith .  multirootdata - root buffer to gather into, amount of space per root is equal to its degree
169295fce210SBarry Smith 
169395fce210SBarry Smith    Level: intermediate
169495fce210SBarry Smith 
169595fce210SBarry Smith .seealso: PetscSFComputeDegreeEnd(), PetscSFScatterEnd()
169695fce210SBarry Smith @*/
169795fce210SBarry Smith PetscErrorCode PetscSFGatherEnd(PetscSF sf,MPI_Datatype unit,const void *leafdata,void *multirootdata)
169895fce210SBarry Smith {
169995fce210SBarry Smith   PetscErrorCode ierr;
170095fce210SBarry Smith   PetscSF        multi;
170195fce210SBarry Smith 
170295fce210SBarry Smith   PetscFunctionBegin;
170395fce210SBarry Smith   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
170495fce210SBarry Smith   ierr = PetscSFSetUp(sf);CHKERRQ(ierr);
170595fce210SBarry Smith   ierr = PetscSFGetMultiSF(sf,&multi);CHKERRQ(ierr);
17068bfbc91cSJed Brown   ierr = PetscSFReduceEnd(multi,unit,leafdata,multirootdata,MPIU_REPLACE);CHKERRQ(ierr);
170795fce210SBarry Smith   PetscFunctionReturn(0);
170895fce210SBarry Smith }
170995fce210SBarry Smith 
171095fce210SBarry Smith /*@C
171195fce210SBarry Smith    PetscSFScatterBegin - begin pointwise scatter operation from multi-roots to leaves, to be completed with PetscSFScatterEnd()
171295fce210SBarry Smith 
171395fce210SBarry Smith    Collective
171495fce210SBarry Smith 
171595fce210SBarry Smith    Input Arguments:
171695fce210SBarry Smith +  sf - star forest
171795fce210SBarry Smith .  unit - data type
171895fce210SBarry Smith -  multirootdata - root buffer to send to each leaf, one unit of data per leaf
171995fce210SBarry Smith 
172095fce210SBarry Smith    Output Argument:
172195fce210SBarry Smith .  leafdata - leaf data to be update with personal data from each respective root
172295fce210SBarry Smith 
172395fce210SBarry Smith    Level: intermediate
172495fce210SBarry Smith 
172595fce210SBarry Smith .seealso: PetscSFComputeDegreeBegin(), PetscSFScatterBegin()
172695fce210SBarry Smith @*/
172795fce210SBarry Smith PetscErrorCode PetscSFScatterBegin(PetscSF sf,MPI_Datatype unit,const void *multirootdata,void *leafdata)
172895fce210SBarry Smith {
172995fce210SBarry Smith   PetscErrorCode ierr;
173095fce210SBarry Smith   PetscSF        multi;
173195fce210SBarry Smith 
173295fce210SBarry Smith   PetscFunctionBegin;
173395fce210SBarry Smith   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
173495fce210SBarry Smith   ierr = PetscSFSetUp(sf);CHKERRQ(ierr);
173595fce210SBarry Smith   ierr = PetscSFGetMultiSF(sf,&multi);CHKERRQ(ierr);
173695fce210SBarry Smith   ierr = PetscSFBcastBegin(multi,unit,multirootdata,leafdata);CHKERRQ(ierr);
173795fce210SBarry Smith   PetscFunctionReturn(0);
173895fce210SBarry Smith }
173995fce210SBarry Smith 
174095fce210SBarry Smith /*@C
174195fce210SBarry Smith    PetscSFScatterEnd - ends pointwise scatter operation that was started with PetscSFScatterBegin()
174295fce210SBarry Smith 
174395fce210SBarry Smith    Collective
174495fce210SBarry Smith 
174595fce210SBarry Smith    Input Arguments:
174695fce210SBarry Smith +  sf - star forest
174795fce210SBarry Smith .  unit - data type
174895fce210SBarry Smith -  multirootdata - root buffer to send to each leaf, one unit of data per leaf
174995fce210SBarry Smith 
175095fce210SBarry Smith    Output Argument:
175195fce210SBarry Smith .  leafdata - leaf data to be update with personal data from each respective root
175295fce210SBarry Smith 
175395fce210SBarry Smith    Level: intermediate
175495fce210SBarry Smith 
175595fce210SBarry Smith .seealso: PetscSFComputeDegreeEnd(), PetscSFScatterEnd()
175695fce210SBarry Smith @*/
175795fce210SBarry Smith PetscErrorCode PetscSFScatterEnd(PetscSF sf,MPI_Datatype unit,const void *multirootdata,void *leafdata)
175895fce210SBarry Smith {
175995fce210SBarry Smith   PetscErrorCode ierr;
176095fce210SBarry Smith   PetscSF        multi;
176195fce210SBarry Smith 
176295fce210SBarry Smith   PetscFunctionBegin;
176395fce210SBarry Smith   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
176495fce210SBarry Smith   ierr = PetscSFSetUp(sf);CHKERRQ(ierr);
176595fce210SBarry Smith   ierr = PetscSFGetMultiSF(sf,&multi);CHKERRQ(ierr);
176695fce210SBarry Smith   ierr = PetscSFBcastEnd(multi,unit,multirootdata,leafdata);CHKERRQ(ierr);
176795fce210SBarry Smith   PetscFunctionReturn(0);
176895fce210SBarry Smith }
1769a7b3aa13SAta Mesgarnejad 
1770a072220fSLawrence Mitchell static PetscErrorCode PetscSFCheckLeavesUnique_Private(PetscSF sf)
1771a072220fSLawrence Mitchell {
1772a072220fSLawrence Mitchell #if defined(PETSC_USE_DEBUG)
1773a072220fSLawrence Mitchell   PetscInt        i, n, nleaves;
1774a072220fSLawrence Mitchell   const PetscInt *ilocal = NULL;
1775a072220fSLawrence Mitchell   PetscHSetI      seen;
1776a072220fSLawrence Mitchell   PetscErrorCode  ierr;
1777a072220fSLawrence Mitchell 
1778a072220fSLawrence Mitchell   PetscFunctionBegin;
1779a072220fSLawrence Mitchell   ierr = PetscSFGetGraph(sf,NULL,&nleaves,&ilocal,NULL);CHKERRQ(ierr);
1780a072220fSLawrence Mitchell   ierr = PetscHSetICreate(&seen);CHKERRQ(ierr);
1781a072220fSLawrence Mitchell   for (i = 0; i < nleaves; i++) {
1782a072220fSLawrence Mitchell     const PetscInt leaf = ilocal ? ilocal[i] : i;
1783a072220fSLawrence Mitchell     ierr = PetscHSetIAdd(seen,leaf);CHKERRQ(ierr);
1784a072220fSLawrence Mitchell   }
1785a072220fSLawrence Mitchell   ierr = PetscHSetIGetSize(seen,&n);CHKERRQ(ierr);
1786a072220fSLawrence Mitchell   if (n != nleaves) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Provided leaves have repeated values: all leaves must be unique");
1787a072220fSLawrence Mitchell   ierr = PetscHSetIDestroy(&seen);CHKERRQ(ierr);
1788a072220fSLawrence Mitchell   PetscFunctionReturn(0);
1789a072220fSLawrence Mitchell #else
1790a072220fSLawrence Mitchell   PetscFunctionBegin;
1791a072220fSLawrence Mitchell   PetscFunctionReturn(0);
1792a072220fSLawrence Mitchell #endif
1793a072220fSLawrence Mitchell }
179454729392SStefano Zampini 
1795a7b3aa13SAta Mesgarnejad /*@
179604c0ada0SJunchao Zhang   PetscSFCompose - Compose a new PetscSF by putting the second SF under the first one in a top (roots) down (leaves) view
1797a7b3aa13SAta Mesgarnejad 
1798a7b3aa13SAta Mesgarnejad   Input Parameters:
179954729392SStefano Zampini + sfA - The first PetscSF
180054729392SStefano Zampini - sfB - The second PetscSF
1801a7b3aa13SAta Mesgarnejad 
1802a7b3aa13SAta Mesgarnejad   Output Parameters:
180354729392SStefano Zampini . sfBA - The composite SF
1804a7b3aa13SAta Mesgarnejad 
1805a7b3aa13SAta Mesgarnejad   Level: developer
1806a7b3aa13SAta Mesgarnejad 
1807a072220fSLawrence Mitchell   Notes:
180854729392SStefano Zampini   Currently, the two SFs must be defined on congruent communicators and they must be true star
180954729392SStefano Zampini   forests, i.e. the same leaf is not connected with different roots.
181054729392SStefano Zampini 
181154729392SStefano Zampini   sfA's leaf space and sfB's root space might be partially overlapped. The composition builds
181254729392SStefano Zampini   a graph with sfA's roots and sfB's leaves only when there is a path between them. Unconnected
181354729392SStefano Zampini   nodes (roots or leaves) are not in sfBA. Doing a Bcast on the new SF is equivalent to doing a
181454729392SStefano Zampini   Bcast on sfA, then a Bcast on sfB, on connected nodes.
1815a072220fSLawrence Mitchell 
181604c0ada0SJunchao Zhang .seealso: PetscSF, PetscSFComposeInverse(), PetscSFGetGraph(), PetscSFSetGraph()
1817a7b3aa13SAta Mesgarnejad @*/
1818a7b3aa13SAta Mesgarnejad PetscErrorCode PetscSFCompose(PetscSF sfA,PetscSF sfB,PetscSF *sfBA)
1819a7b3aa13SAta Mesgarnejad {
182004c0ada0SJunchao Zhang   PetscErrorCode    ierr;
1821a7b3aa13SAta Mesgarnejad   const PetscSFNode *remotePointsA,*remotePointsB;
1822d41018fbSJunchao Zhang   PetscSFNode       *remotePointsBA=NULL,*reorderedRemotePointsA = NULL,*leafdataB;
182354729392SStefano Zampini   const PetscInt    *localPointsA,*localPointsB;
182454729392SStefano Zampini   PetscInt          *localPointsBA;
182554729392SStefano Zampini   PetscInt          i,numRootsA,numLeavesA,numRootsB,numLeavesB,minleaf,maxleaf,numLeavesBA;
182654729392SStefano Zampini   PetscBool         denseB;
1827a7b3aa13SAta Mesgarnejad 
1828a7b3aa13SAta Mesgarnejad   PetscFunctionBegin;
1829a7b3aa13SAta Mesgarnejad   PetscValidHeaderSpecific(sfA,PETSCSF_CLASSID,1);
183029046d53SLisandro Dalcin   PetscSFCheckGraphSet(sfA,1);
183129046d53SLisandro Dalcin   PetscValidHeaderSpecific(sfB,PETSCSF_CLASSID,2);
183229046d53SLisandro Dalcin   PetscSFCheckGraphSet(sfB,2);
183354729392SStefano Zampini   PetscCheckSameComm(sfA,1,sfB,2);
183429046d53SLisandro Dalcin   PetscValidPointer(sfBA,3);
183554729392SStefano Zampini   ierr = PetscSFCheckLeavesUnique_Private(sfA);CHKERRQ(ierr);
183654729392SStefano Zampini   ierr = PetscSFCheckLeavesUnique_Private(sfB);CHKERRQ(ierr);
183754729392SStefano Zampini 
1838a7b3aa13SAta Mesgarnejad   ierr = PetscSFGetGraph(sfA,&numRootsA,&numLeavesA,&localPointsA,&remotePointsA);CHKERRQ(ierr);
1839a7b3aa13SAta Mesgarnejad   ierr = PetscSFGetGraph(sfB,&numRootsB,&numLeavesB,&localPointsB,&remotePointsB);CHKERRQ(ierr);
1840d41018fbSJunchao Zhang   if (localPointsA) {
184154729392SStefano Zampini     ierr = PetscMalloc1(numRootsB,&reorderedRemotePointsA);CHKERRQ(ierr);
184254729392SStefano Zampini     for (i=0; i<numRootsB; i++) {
184354729392SStefano Zampini       reorderedRemotePointsA[i].rank = -1;
184454729392SStefano Zampini       reorderedRemotePointsA[i].index = -1;
184554729392SStefano Zampini     }
184654729392SStefano Zampini     for (i=0; i<numLeavesA; i++) {
184754729392SStefano Zampini       if (localPointsA[i] >= numRootsB) continue;
184854729392SStefano Zampini       reorderedRemotePointsA[localPointsA[i]] = remotePointsA[i];
184954729392SStefano Zampini     }
1850d41018fbSJunchao Zhang     remotePointsA = reorderedRemotePointsA;
1851d41018fbSJunchao Zhang   }
1852d41018fbSJunchao Zhang   ierr = PetscSFGetLeafRange(sfB,&minleaf,&maxleaf);CHKERRQ(ierr);
1853d41018fbSJunchao Zhang   ierr = PetscMalloc1(maxleaf-minleaf+1,&leafdataB);CHKERRQ(ierr);
1854d41018fbSJunchao Zhang   ierr = PetscSFBcastBegin(sfB,MPIU_2INT,remotePointsA,leafdataB-minleaf);CHKERRQ(ierr);
1855d41018fbSJunchao Zhang   ierr = PetscSFBcastEnd(sfB,MPIU_2INT,remotePointsA,leafdataB-minleaf);CHKERRQ(ierr);
1856d41018fbSJunchao Zhang   ierr = PetscFree(reorderedRemotePointsA);CHKERRQ(ierr);
1857d41018fbSJunchao Zhang 
185854729392SStefano Zampini   denseB = (PetscBool)!localPointsB;
185954729392SStefano Zampini   for (i=0,numLeavesBA=0; i<numLeavesB; i++) {
186054729392SStefano Zampini     if (leafdataB[localPointsB ? localPointsB[i]-minleaf : i].rank == -1) denseB = PETSC_FALSE;
186154729392SStefano Zampini     else numLeavesBA++;
186254729392SStefano Zampini   }
186354729392SStefano Zampini   if (denseB) {
1864d41018fbSJunchao Zhang     localPointsBA  = NULL;
1865d41018fbSJunchao Zhang     remotePointsBA = leafdataB;
1866d41018fbSJunchao Zhang   } else {
186754729392SStefano Zampini     ierr = PetscMalloc1(numLeavesBA,&localPointsBA);CHKERRQ(ierr);
186854729392SStefano Zampini     ierr = PetscMalloc1(numLeavesBA,&remotePointsBA);CHKERRQ(ierr);
186954729392SStefano Zampini     for (i=0,numLeavesBA=0; i<numLeavesB; i++) {
187054729392SStefano Zampini       const PetscInt l = localPointsB ? localPointsB[i] : i;
187154729392SStefano Zampini 
187254729392SStefano Zampini       if (leafdataB[l-minleaf].rank == -1) continue;
187354729392SStefano Zampini       remotePointsBA[numLeavesBA] = leafdataB[l-minleaf];
187454729392SStefano Zampini       localPointsBA[numLeavesBA] = l;
187554729392SStefano Zampini       numLeavesBA++;
187654729392SStefano Zampini     }
1877d41018fbSJunchao Zhang     ierr = PetscFree(leafdataB);CHKERRQ(ierr);
1878d41018fbSJunchao Zhang   }
187954729392SStefano Zampini   ierr = PetscSFCreate(PetscObjectComm((PetscObject)sfA),sfBA);CHKERRQ(ierr);
188054729392SStefano Zampini   ierr = PetscSFSetGraph(*sfBA,numRootsA,numLeavesBA,localPointsBA,PETSC_OWN_POINTER,remotePointsBA,PETSC_OWN_POINTER);CHKERRQ(ierr);
1881a7b3aa13SAta Mesgarnejad   PetscFunctionReturn(0);
1882a7b3aa13SAta Mesgarnejad }
18831c6ba672SJunchao Zhang 
188404c0ada0SJunchao Zhang /*@
188554729392SStefano Zampini   PetscSFComposeInverse - Compose a new PetscSF by putting the inverse of the second SF under the first one
188604c0ada0SJunchao Zhang 
188704c0ada0SJunchao Zhang   Input Parameters:
188854729392SStefano Zampini + sfA - The first PetscSF
188954729392SStefano Zampini - sfB - The second PetscSF
189004c0ada0SJunchao Zhang 
189104c0ada0SJunchao Zhang   Output Parameters:
189254729392SStefano Zampini . sfBA - The composite SF.
189304c0ada0SJunchao Zhang 
189404c0ada0SJunchao Zhang   Level: developer
189504c0ada0SJunchao Zhang 
189654729392SStefano Zampini   Notes:
189754729392SStefano Zampini   Currently, the two SFs must be defined on congruent communicators and they must be true star
189854729392SStefano Zampini   forests, i.e. the same leaf is not connected with different roots. Even more, all roots of the
189954729392SStefano Zampini   second SF must have a degree of 1, i.e., no roots have more than one leaf connected.
190054729392SStefano Zampini 
190154729392SStefano Zampini   sfA's leaf space and sfB's leaf space might be partially overlapped. The composition builds
190254729392SStefano Zampini   a graph with sfA's roots and sfB's roots only when there is a path between them. Unconnected
190354729392SStefano Zampini   roots are not in sfBA. Doing a Bcast on the new SF is equivalent to doing a Bcast on sfA, then
190454729392SStefano Zampini   a Reduce on sfB, on connected roots.
190554729392SStefano Zampini 
190654729392SStefano Zampini .seealso: PetscSF, PetscSFCompose(), PetscSFGetGraph(), PetscSFSetGraph(), PetscSFCreateInverseSF()
190704c0ada0SJunchao Zhang @*/
190804c0ada0SJunchao Zhang PetscErrorCode PetscSFComposeInverse(PetscSF sfA,PetscSF sfB,PetscSF *sfBA)
190904c0ada0SJunchao Zhang {
191004c0ada0SJunchao Zhang   PetscErrorCode    ierr;
191104c0ada0SJunchao Zhang   const PetscSFNode *remotePointsA,*remotePointsB;
191204c0ada0SJunchao Zhang   PetscSFNode       *remotePointsBA;
191304c0ada0SJunchao Zhang   const PetscInt    *localPointsA,*localPointsB;
191454729392SStefano Zampini   PetscSFNode       *reorderedRemotePointsA = NULL;
191554729392SStefano Zampini   PetscInt          i,numRootsA,numLeavesA,numLeavesBA,numRootsB,numLeavesB,minleaf,maxleaf,*localPointsBA;
191604c0ada0SJunchao Zhang 
191704c0ada0SJunchao Zhang   PetscFunctionBegin;
191804c0ada0SJunchao Zhang   PetscValidHeaderSpecific(sfA,PETSCSF_CLASSID,1);
191904c0ada0SJunchao Zhang   PetscSFCheckGraphSet(sfA,1);
192004c0ada0SJunchao Zhang   PetscValidHeaderSpecific(sfB,PETSCSF_CLASSID,2);
192104c0ada0SJunchao Zhang   PetscSFCheckGraphSet(sfB,2);
192254729392SStefano Zampini   PetscCheckSameComm(sfA,1,sfB,2);
192304c0ada0SJunchao Zhang   PetscValidPointer(sfBA,3);
192454729392SStefano Zampini   ierr = PetscSFCheckLeavesUnique_Private(sfA);CHKERRQ(ierr);
192554729392SStefano Zampini   ierr = PetscSFCheckLeavesUnique_Private(sfB);CHKERRQ(ierr);
192654729392SStefano Zampini   /* TODO: Check roots of sfB have degree of 1 */
192754729392SStefano Zampini 
192804c0ada0SJunchao Zhang   ierr = PetscSFGetGraph(sfA, &numRootsA, &numLeavesA, &localPointsA, &remotePointsA);CHKERRQ(ierr);
192904c0ada0SJunchao Zhang   ierr = PetscSFGetGraph(sfB, &numRootsB, &numLeavesB, &localPointsB, &remotePointsB);CHKERRQ(ierr);
193054729392SStefano Zampini   ierr = PetscSFGetLeafRange(sfB, &minleaf, &maxleaf);CHKERRQ(ierr);
193154729392SStefano Zampini   ierr = PetscMalloc1(maxleaf - minleaf + 1,&reorderedRemotePointsA);CHKERRQ(ierr);
193254729392SStefano Zampini   for (i=0; i<maxleaf - minleaf + 1; i++) {
193354729392SStefano Zampini     reorderedRemotePointsA[i].rank = -1;
193454729392SStefano Zampini     reorderedRemotePointsA[i].index = -1;
193554729392SStefano Zampini   }
193654729392SStefano Zampini   if (localPointsA) {
193754729392SStefano Zampini     for (i=0; i<numLeavesA; i++) {
193854729392SStefano Zampini       if (localPointsA[i] > maxleaf || localPointsA[i] < minleaf) continue;
193954729392SStefano Zampini       reorderedRemotePointsA[localPointsA[i] - minleaf] = remotePointsA[i];
194054729392SStefano Zampini     }
194154729392SStefano Zampini   } else {
194254729392SStefano Zampini     for (i=0; i<numLeavesA; i++) {
194354729392SStefano Zampini       if (i > maxleaf || i < minleaf) continue;
194454729392SStefano Zampini       reorderedRemotePointsA[i - minleaf] = remotePointsA[i];
194554729392SStefano Zampini     }
194654729392SStefano Zampini   }
194754729392SStefano Zampini 
194854729392SStefano Zampini   ierr = PetscMalloc1(numRootsB,&localPointsBA);CHKERRQ(ierr);
194904c0ada0SJunchao Zhang   ierr = PetscMalloc1(numRootsB,&remotePointsBA);CHKERRQ(ierr);
195054729392SStefano Zampini   for (i=0; i<numRootsB; i++) {
195154729392SStefano Zampini     remotePointsBA[i].rank = -1;
195254729392SStefano Zampini     remotePointsBA[i].index = -1;
195354729392SStefano Zampini   }
195454729392SStefano Zampini 
195554729392SStefano Zampini   /* Once we implement the TODO above (check all roots of sfB have degree of 1), we can replace the MPI_MAXLOC
195654729392SStefano Zampini      with MPIU_REPLACE. In that case, MPI_MAXLOC and MPIU_REPLACE have the same effect.
195754729392SStefano Zampini    */
195854729392SStefano Zampini   ierr = PetscSFReduceBegin(sfB,MPIU_2INT,reorderedRemotePointsA-minleaf,remotePointsBA,MPI_MAXLOC);CHKERRQ(ierr);
195954729392SStefano Zampini   ierr = PetscSFReduceEnd(sfB,MPIU_2INT,reorderedRemotePointsA-minleaf,remotePointsBA,MPI_MAXLOC);CHKERRQ(ierr);
196054729392SStefano Zampini   ierr = PetscFree(reorderedRemotePointsA);CHKERRQ(ierr);
196154729392SStefano Zampini   for (i=0,numLeavesBA=0; i<numRootsB; i++) {
196254729392SStefano Zampini     if (remotePointsBA[i].rank == -1) continue;
196354729392SStefano Zampini     remotePointsBA[numLeavesBA].rank = remotePointsBA[i].rank;
196454729392SStefano Zampini     remotePointsBA[numLeavesBA].index = remotePointsBA[i].index;
196554729392SStefano Zampini     localPointsBA[numLeavesBA] = i;
196654729392SStefano Zampini     numLeavesBA++;
196754729392SStefano Zampini   }
196854729392SStefano Zampini   ierr = PetscSFCreate(PetscObjectComm((PetscObject)sfA),sfBA);CHKERRQ(ierr);
196954729392SStefano Zampini   ierr = PetscSFSetGraph(*sfBA,numRootsA,numLeavesBA,localPointsBA,PETSC_OWN_POINTER,remotePointsBA,PETSC_OWN_POINTER);CHKERRQ(ierr);
197004c0ada0SJunchao Zhang   PetscFunctionReturn(0);
197104c0ada0SJunchao Zhang }
197204c0ada0SJunchao Zhang 
19731c6ba672SJunchao Zhang /*
19741c6ba672SJunchao Zhang   PetscSFCreateLocalSF_Private - Creates a local PetscSF that only has intra-process edges of the global PetscSF
19751c6ba672SJunchao Zhang 
19761c6ba672SJunchao Zhang   Input Parameters:
19771c6ba672SJunchao Zhang . sf - The global PetscSF
19781c6ba672SJunchao Zhang 
19791c6ba672SJunchao Zhang   Output Parameters:
19801c6ba672SJunchao Zhang . out - The local PetscSF
19811c6ba672SJunchao Zhang  */
19821c6ba672SJunchao Zhang PetscErrorCode PetscSFCreateLocalSF_Private(PetscSF sf,PetscSF *out)
19831c6ba672SJunchao Zhang {
19841c6ba672SJunchao Zhang   MPI_Comm           comm;
19851c6ba672SJunchao Zhang   PetscMPIInt        myrank;
19861c6ba672SJunchao Zhang   const PetscInt     *ilocal;
19871c6ba672SJunchao Zhang   const PetscSFNode  *iremote;
19881c6ba672SJunchao Zhang   PetscInt           i,j,nroots,nleaves,lnleaves,*lilocal;
19891c6ba672SJunchao Zhang   PetscSFNode        *liremote;
19901c6ba672SJunchao Zhang   PetscSF            lsf;
19911c6ba672SJunchao Zhang   PetscErrorCode     ierr;
19921c6ba672SJunchao Zhang 
19931c6ba672SJunchao Zhang   PetscFunctionBegin;
19941c6ba672SJunchao Zhang   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
19951c6ba672SJunchao Zhang   if (sf->ops->CreateLocalSF) {
19961c6ba672SJunchao Zhang     ierr = (*sf->ops->CreateLocalSF)(sf,out);CHKERRQ(ierr);
19971c6ba672SJunchao Zhang   } else {
19981c6ba672SJunchao Zhang     /* Could use PetscSFCreateEmbeddedLeafSF, but since we know the comm is PETSC_COMM_SELF, we can make it fast */
19991c6ba672SJunchao Zhang     ierr = PetscObjectGetComm((PetscObject)sf,&comm);CHKERRQ(ierr);
20001c6ba672SJunchao Zhang     ierr = MPI_Comm_rank(comm,&myrank);CHKERRQ(ierr);
20011c6ba672SJunchao Zhang 
20021c6ba672SJunchao Zhang     /* Find out local edges and build a local SF */
20031c6ba672SJunchao Zhang     ierr = PetscSFGetGraph(sf,&nroots,&nleaves,&ilocal,&iremote);CHKERRQ(ierr);
20041c6ba672SJunchao Zhang     for (i=lnleaves=0; i<nleaves; i++) {if (iremote[i].rank == (PetscInt)myrank) lnleaves++;}
20051c6ba672SJunchao Zhang     ierr = PetscMalloc1(lnleaves,&lilocal);CHKERRQ(ierr);
20061c6ba672SJunchao Zhang     ierr = PetscMalloc1(lnleaves,&liremote);CHKERRQ(ierr);
20071c6ba672SJunchao Zhang 
20081c6ba672SJunchao Zhang     for (i=j=0; i<nleaves; i++) {
20091c6ba672SJunchao Zhang       if (iremote[i].rank == (PetscInt)myrank) {
20101c6ba672SJunchao Zhang         lilocal[j]        = ilocal? ilocal[i] : i; /* ilocal=NULL for contiguous storage */
20111c6ba672SJunchao Zhang         liremote[j].rank  = 0; /* rank in PETSC_COMM_SELF */
20121c6ba672SJunchao Zhang         liremote[j].index = iremote[i].index;
20131c6ba672SJunchao Zhang         j++;
20141c6ba672SJunchao Zhang       }
20151c6ba672SJunchao Zhang     }
20161c6ba672SJunchao Zhang     ierr = PetscSFCreate(PETSC_COMM_SELF,&lsf);CHKERRQ(ierr);
20171c6ba672SJunchao Zhang     ierr = PetscSFSetGraph(lsf,nroots,lnleaves,lilocal,PETSC_OWN_POINTER,liremote,PETSC_OWN_POINTER);CHKERRQ(ierr);
20181c6ba672SJunchao Zhang     ierr = PetscSFSetUp(lsf);CHKERRQ(ierr);
20191c6ba672SJunchao Zhang     *out = lsf;
20201c6ba672SJunchao Zhang   }
20211c6ba672SJunchao Zhang   PetscFunctionReturn(0);
20221c6ba672SJunchao Zhang }
2023dd5b3ca6SJunchao Zhang 
2024dd5b3ca6SJunchao Zhang /* Similar to PetscSFBcast, but only Bcast to leaves on rank 0 */
2025dd5b3ca6SJunchao Zhang PetscErrorCode PetscSFBcastToZero_Private(PetscSF sf,MPI_Datatype unit,const void *rootdata,void *leafdata)
2026dd5b3ca6SJunchao Zhang {
2027dd5b3ca6SJunchao Zhang   PetscErrorCode     ierr;
2028eb02082bSJunchao Zhang   PetscMemType       rootmtype,leafmtype;
2029dd5b3ca6SJunchao Zhang 
2030dd5b3ca6SJunchao Zhang   PetscFunctionBegin;
2031dd5b3ca6SJunchao Zhang   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
2032dd5b3ca6SJunchao Zhang   ierr = PetscSFSetUp(sf);CHKERRQ(ierr);
2033dd5b3ca6SJunchao Zhang   ierr = PetscLogEventBegin(PETSCSF_BcastAndOpBegin,sf,0,0,0);CHKERRQ(ierr);
2034eb02082bSJunchao Zhang   ierr = PetscGetMemType(rootdata,&rootmtype);CHKERRQ(ierr);
2035eb02082bSJunchao Zhang   ierr = PetscGetMemType(leafdata,&leafmtype);CHKERRQ(ierr);
2036dd5b3ca6SJunchao Zhang   if (sf->ops->BcastToZero) {
2037eb02082bSJunchao Zhang     ierr = (*sf->ops->BcastToZero)(sf,unit,rootmtype,rootdata,leafmtype,leafdata);CHKERRQ(ierr);
2038dd5b3ca6SJunchao Zhang   } else SETERRQ(PETSC_COMM_SELF,PETSC_ERR_SUP,"PetscSFBcastToZero_Private is not supported on this SF type");
2039dd5b3ca6SJunchao Zhang   ierr = PetscLogEventEnd(PETSCSF_BcastAndOpBegin,sf,0,0,0);CHKERRQ(ierr);
2040dd5b3ca6SJunchao Zhang   PetscFunctionReturn(0);
2041dd5b3ca6SJunchao Zhang }
2042dd5b3ca6SJunchao Zhang 
2043