1af0996ceSBarry Smith #include <petsc/private/sfimpl.h> /*I "petscsf.h" I*/ 2c4e6a40aSLawrence Mitchell #include <petsc/private/hashseti.h> 353dd6d7dSJunchao Zhang #include <petsc/private/viewerimpl.h> 4eec179cfSJacob Faibussowitsch #include <petsc/private/hashmapi.h> 595fce210SBarry Smith 67fd2d3dbSJunchao Zhang #if defined(PETSC_HAVE_CUDA) 77fd2d3dbSJunchao Zhang #include <cuda_runtime.h> 8715b587bSJunchao Zhang #include <petscdevice_cuda.h> 97fd2d3dbSJunchao Zhang #endif 107fd2d3dbSJunchao Zhang 117fd2d3dbSJunchao Zhang #if defined(PETSC_HAVE_HIP) 127fd2d3dbSJunchao Zhang #include <hip/hip_runtime.h> 137fd2d3dbSJunchao Zhang #endif 147fd2d3dbSJunchao Zhang 152abc8c78SJacob Faibussowitsch #if defined(PETSC_CLANG_STATIC_ANALYZER) 164bf303faSJacob Faibussowitsch extern void PetscSFCheckGraphSet(PetscSF, int); 172abc8c78SJacob Faibussowitsch #else 1895fce210SBarry Smith #if defined(PETSC_USE_DEBUG) 19a8f51744SPierre Jolivet #define PetscSFCheckGraphSet(sf, arg) PetscCheck((sf)->graphset, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Must call PetscSFSetGraph() or PetscSFSetGraphWithPattern() on argument %d \"%s\" before %s()", (arg), #sf, PETSC_FUNCTION_NAME) 2095fce210SBarry Smith #else 219371c9d4SSatish Balay #define PetscSFCheckGraphSet(sf, arg) \ 229371c9d4SSatish Balay do { \ 239371c9d4SSatish Balay } while (0) 2495fce210SBarry Smith #endif 252abc8c78SJacob Faibussowitsch #endif 2695fce210SBarry Smith 274c8fdceaSLisandro Dalcin const char *const PetscSFDuplicateOptions[] = {"CONFONLY", "RANKS", "GRAPH", "PetscSFDuplicateOption", "PETSCSF_DUPLICATE_", NULL}; 281f40158dSVaclav Hapla const char *const PetscSFConcatenateRootModes[] = {"local", "shared", "global", "PetscSFConcatenateRootMode", "PETSCSF_CONCATENATE_ROOTMODE_", NULL}; 2995fce210SBarry Smith 308af6ec1cSBarry Smith /*@ 3195fce210SBarry Smith PetscSFCreate - create a star forest communication context 3295fce210SBarry Smith 33d083f849SBarry Smith Collective 3495fce210SBarry Smith 354165533cSJose E. Roman Input Parameter: 3695fce210SBarry Smith . comm - communicator on which the star forest will operate 3795fce210SBarry Smith 384165533cSJose E. Roman Output Parameter: 3995fce210SBarry Smith . sf - new star forest context 4095fce210SBarry Smith 4120662ed9SBarry Smith Options Database Key: 426677b1c1SJunchao Zhang + -sf_type basic - Use MPI persistent Isend/Irecv for communication (Default) 436677b1c1SJunchao Zhang . -sf_type window - Use MPI-3 one-sided window for communication 446677b1c1SJunchao Zhang . -sf_type neighbor - Use MPI-3 neighborhood collectives for communication 456677b1c1SJunchao Zhang - -sf_neighbor_persistent <bool> - If true, use MPI-4 persistent neighborhood collectives for communication (used along with -sf_type neighbor) 46dd5b3ca6SJunchao Zhang 4795fce210SBarry Smith Level: intermediate 4895fce210SBarry Smith 49cab54364SBarry Smith Note: 50cab54364SBarry Smith When one knows the communication graph is one of the predefined graph, such as `MPI_Alltoall()`, `MPI_Allgatherv()`, 51cab54364SBarry Smith `MPI_Gatherv()`, one can create a `PetscSF` and then set its graph with `PetscSFSetGraphWithPattern()`. These special 5220662ed9SBarry Smith `SF`s are optimized and they have better performance than the general `SF`s. 53dd5b3ca6SJunchao Zhang 5438b5cf2dSJacob Faibussowitsch .seealso: `PetscSF`, `PetscSFSetType`, `PetscSFSetGraph()`, `PetscSFSetGraphWithPattern()`, `PetscSFDestroy()` 5595fce210SBarry Smith @*/ 56d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFCreate(MPI_Comm comm, PetscSF *sf) 57d71ae5a4SJacob Faibussowitsch { 5895fce210SBarry Smith PetscSF b; 5995fce210SBarry Smith 6095fce210SBarry Smith PetscFunctionBegin; 614f572ea9SToby Isaac PetscAssertPointer(sf, 2); 629566063dSJacob Faibussowitsch PetscCall(PetscSFInitializePackage()); 6395fce210SBarry Smith 649566063dSJacob Faibussowitsch PetscCall(PetscHeaderCreate(b, PETSCSF_CLASSID, "PetscSF", "Star Forest", "PetscSF", comm, PetscSFDestroy, PetscSFView)); 6595fce210SBarry Smith b->nroots = -1; 6695fce210SBarry Smith b->nleaves = -1; 67*1690c2aeSBarry Smith b->minleaf = PETSC_INT_MAX; 68*1690c2aeSBarry Smith b->maxleaf = PETSC_INT_MIN; 6995fce210SBarry Smith b->nranks = -1; 7095fce210SBarry Smith b->rankorder = PETSC_TRUE; 7195fce210SBarry Smith b->ingroup = MPI_GROUP_NULL; 7295fce210SBarry Smith b->outgroup = MPI_GROUP_NULL; 7395fce210SBarry Smith b->graphset = PETSC_FALSE; 7420c24465SJunchao Zhang #if defined(PETSC_HAVE_DEVICE) 7520c24465SJunchao Zhang b->use_gpu_aware_mpi = use_gpu_aware_mpi; 7620c24465SJunchao Zhang b->use_stream_aware_mpi = PETSC_FALSE; 7771438e86SJunchao Zhang b->unknown_input_stream = PETSC_FALSE; 7827f636e8SJunchao Zhang #if defined(PETSC_HAVE_KOKKOS) /* Prefer kokkos over cuda*/ 7920c24465SJunchao Zhang b->backend = PETSCSF_BACKEND_KOKKOS; 8027f636e8SJunchao Zhang #elif defined(PETSC_HAVE_CUDA) 8127f636e8SJunchao Zhang b->backend = PETSCSF_BACKEND_CUDA; 8259af0bd3SScott Kruger #elif defined(PETSC_HAVE_HIP) 8359af0bd3SScott Kruger b->backend = PETSCSF_BACKEND_HIP; 8420c24465SJunchao Zhang #endif 8571438e86SJunchao Zhang 8671438e86SJunchao Zhang #if defined(PETSC_HAVE_NVSHMEM) 8771438e86SJunchao Zhang b->use_nvshmem = PETSC_FALSE; /* Default is not to try NVSHMEM */ 8871438e86SJunchao Zhang b->use_nvshmem_get = PETSC_FALSE; /* Default is to use nvshmem_put based protocol */ 899566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetBool(NULL, NULL, "-use_nvshmem", &b->use_nvshmem, NULL)); 909566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetBool(NULL, NULL, "-use_nvshmem_get", &b->use_nvshmem_get, NULL)); 9171438e86SJunchao Zhang #endif 9220c24465SJunchao Zhang #endif 9360c22052SBarry Smith b->vscat.from_n = -1; 9460c22052SBarry Smith b->vscat.to_n = -1; 9560c22052SBarry Smith b->vscat.unit = MPIU_SCALAR; 9695fce210SBarry Smith *sf = b; 973ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9895fce210SBarry Smith } 9995fce210SBarry Smith 10029046d53SLisandro Dalcin /*@ 10195fce210SBarry Smith PetscSFReset - Reset a star forest so that different sizes or neighbors can be used 10295fce210SBarry Smith 10395fce210SBarry Smith Collective 10495fce210SBarry Smith 1054165533cSJose E. Roman Input Parameter: 10695fce210SBarry Smith . sf - star forest 10795fce210SBarry Smith 10895fce210SBarry Smith Level: advanced 10995fce210SBarry Smith 110cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFCreate()`, `PetscSFSetGraph()`, `PetscSFDestroy()` 11195fce210SBarry Smith @*/ 112d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFReset(PetscSF sf) 113d71ae5a4SJacob Faibussowitsch { 11495fce210SBarry Smith PetscFunctionBegin; 11595fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 116dbbe0bcdSBarry Smith PetscTryTypeMethod(sf, Reset); 1170dd791a8SStefano Zampini PetscCall(PetscSFDestroy(&sf->rankssf)); 1180dd791a8SStefano Zampini 11929046d53SLisandro Dalcin sf->nroots = -1; 12029046d53SLisandro Dalcin sf->nleaves = -1; 121*1690c2aeSBarry Smith sf->minleaf = PETSC_INT_MAX; 122*1690c2aeSBarry Smith sf->maxleaf = PETSC_INT_MIN; 12395fce210SBarry Smith sf->mine = NULL; 12495fce210SBarry Smith sf->remote = NULL; 12529046d53SLisandro Dalcin sf->graphset = PETSC_FALSE; 1269566063dSJacob Faibussowitsch PetscCall(PetscFree(sf->mine_alloc)); 1279566063dSJacob Faibussowitsch PetscCall(PetscFree(sf->remote_alloc)); 12821c688dcSJed Brown sf->nranks = -1; 1299566063dSJacob Faibussowitsch PetscCall(PetscFree4(sf->ranks, sf->roffset, sf->rmine, sf->rremote)); 13029046d53SLisandro Dalcin sf->degreeknown = PETSC_FALSE; 1319566063dSJacob Faibussowitsch PetscCall(PetscFree(sf->degree)); 1329566063dSJacob Faibussowitsch if (sf->ingroup != MPI_GROUP_NULL) PetscCallMPI(MPI_Group_free(&sf->ingroup)); 1339566063dSJacob Faibussowitsch if (sf->outgroup != MPI_GROUP_NULL) PetscCallMPI(MPI_Group_free(&sf->outgroup)); 1340dd791a8SStefano Zampini 135013b3241SStefano Zampini if (sf->multi) sf->multi->multi = NULL; 1369566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf->multi)); 1370dd791a8SStefano Zampini 1389566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&sf->map)); 13971438e86SJunchao Zhang 14071438e86SJunchao Zhang #if defined(PETSC_HAVE_DEVICE) 1419566063dSJacob Faibussowitsch for (PetscInt i = 0; i < 2; i++) PetscCall(PetscSFFree(sf, PETSC_MEMTYPE_DEVICE, sf->rmine_d[i])); 14271438e86SJunchao Zhang #endif 14371438e86SJunchao Zhang 14495fce210SBarry Smith sf->setupcalled = PETSC_FALSE; 1453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14695fce210SBarry Smith } 14795fce210SBarry Smith 148cc4c1da9SBarry Smith /*@ 149cab54364SBarry Smith PetscSFSetType - Set the `PetscSF` communication implementation 15095fce210SBarry Smith 151c3339decSBarry Smith Collective 15295fce210SBarry Smith 15395fce210SBarry Smith Input Parameters: 154cab54364SBarry Smith + sf - the `PetscSF` context 15595fce210SBarry Smith - type - a known method 156cab54364SBarry Smith .vb 157cab54364SBarry Smith PETSCSFWINDOW - MPI-2/3 one-sided 158cab54364SBarry Smith PETSCSFBASIC - basic implementation using MPI-1 two-sided 159cab54364SBarry Smith .ve 16095fce210SBarry Smith 16195fce210SBarry Smith Options Database Key: 16220662ed9SBarry Smith . -sf_type <type> - Sets the method; for example `basic` or `window` use -help for a list of available methods 163cab54364SBarry Smith 164cab54364SBarry Smith Level: intermediate 16595fce210SBarry Smith 16695fce210SBarry Smith Notes: 16720662ed9SBarry Smith See `PetscSFType` for possible values 16895fce210SBarry Smith 16920662ed9SBarry Smith .seealso: `PetscSF`, `PetscSFType`, `PetscSFCreate()` 17095fce210SBarry Smith @*/ 171d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFSetType(PetscSF sf, PetscSFType type) 172d71ae5a4SJacob Faibussowitsch { 17395fce210SBarry Smith PetscBool match; 1745f80ce2aSJacob Faibussowitsch PetscErrorCode (*r)(PetscSF); 17595fce210SBarry Smith 17695fce210SBarry Smith PetscFunctionBegin; 17795fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 1784f572ea9SToby Isaac PetscAssertPointer(type, 2); 17995fce210SBarry Smith 1809566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)sf, type, &match)); 1813ba16761SJacob Faibussowitsch if (match) PetscFunctionReturn(PETSC_SUCCESS); 18295fce210SBarry Smith 1839566063dSJacob Faibussowitsch PetscCall(PetscFunctionListFind(PetscSFList, type, &r)); 1846adde796SStefano Zampini PetscCheck(r, PetscObjectComm((PetscObject)sf), PETSC_ERR_ARG_UNKNOWN_TYPE, "Unable to find requested PetscSF type %s", type); 18529046d53SLisandro Dalcin /* Destroy the previous PetscSF implementation context */ 186dbbe0bcdSBarry Smith PetscTryTypeMethod(sf, Destroy); 1879566063dSJacob Faibussowitsch PetscCall(PetscMemzero(sf->ops, sizeof(*sf->ops))); 1889566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)sf, type)); 1899566063dSJacob Faibussowitsch PetscCall((*r)(sf)); 1903ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 19195fce210SBarry Smith } 19295fce210SBarry Smith 193cc4c1da9SBarry Smith /*@ 194cab54364SBarry Smith PetscSFGetType - Get the `PetscSF` communication implementation 19529046d53SLisandro Dalcin 19629046d53SLisandro Dalcin Not Collective 19729046d53SLisandro Dalcin 19829046d53SLisandro Dalcin Input Parameter: 199cab54364SBarry Smith . sf - the `PetscSF` context 20029046d53SLisandro Dalcin 20129046d53SLisandro Dalcin Output Parameter: 202cab54364SBarry Smith . type - the `PetscSF` type name 20329046d53SLisandro Dalcin 20429046d53SLisandro Dalcin Level: intermediate 20529046d53SLisandro Dalcin 20620662ed9SBarry Smith .seealso: `PetscSF`, `PetscSFType`, `PetscSFSetType()`, `PetscSFCreate()` 20729046d53SLisandro Dalcin @*/ 208d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFGetType(PetscSF sf, PetscSFType *type) 209d71ae5a4SJacob Faibussowitsch { 21029046d53SLisandro Dalcin PetscFunctionBegin; 21129046d53SLisandro Dalcin PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 2124f572ea9SToby Isaac PetscAssertPointer(type, 2); 21329046d53SLisandro Dalcin *type = ((PetscObject)sf)->type_name; 2143ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 21529046d53SLisandro Dalcin } 21629046d53SLisandro Dalcin 2170764c050SBarry Smith /*@ 21820662ed9SBarry Smith PetscSFDestroy - destroy a star forest 21995fce210SBarry Smith 22095fce210SBarry Smith Collective 22195fce210SBarry Smith 2224165533cSJose E. Roman Input Parameter: 22395fce210SBarry Smith . sf - address of star forest 22495fce210SBarry Smith 22595fce210SBarry Smith Level: intermediate 22695fce210SBarry Smith 22720662ed9SBarry Smith .seealso: `PetscSF`, `PetscSFType`, `PetscSFCreate()`, `PetscSFReset()` 22895fce210SBarry Smith @*/ 229d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFDestroy(PetscSF *sf) 230d71ae5a4SJacob Faibussowitsch { 23195fce210SBarry Smith PetscFunctionBegin; 2323ba16761SJacob Faibussowitsch if (!*sf) PetscFunctionReturn(PETSC_SUCCESS); 233f4f49eeaSPierre Jolivet PetscValidHeaderSpecific(*sf, PETSCSF_CLASSID, 1); 234f4f49eeaSPierre Jolivet if (--((PetscObject)*sf)->refct > 0) { 2359371c9d4SSatish Balay *sf = NULL; 2363ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2379371c9d4SSatish Balay } 2389566063dSJacob Faibussowitsch PetscCall(PetscSFReset(*sf)); 239f4f49eeaSPierre Jolivet PetscTryTypeMethod(*sf, Destroy); 2409566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&(*sf)->vscat.lsf)); 2419566063dSJacob Faibussowitsch if ((*sf)->vscat.bs > 1) PetscCallMPI(MPI_Type_free(&(*sf)->vscat.unit)); 242c02794c0SJunchao Zhang #if defined(PETSC_HAVE_CUDA) && defined(PETSC_HAVE_MPIX_STREAM) 243715b587bSJunchao Zhang if ((*sf)->use_stream_aware_mpi) { 244715b587bSJunchao Zhang PetscCallMPI(MPIX_Stream_free(&(*sf)->mpi_stream)); 245715b587bSJunchao Zhang PetscCallMPI(MPI_Comm_free(&(*sf)->stream_comm)); 246715b587bSJunchao Zhang } 247715b587bSJunchao Zhang #endif 2489566063dSJacob Faibussowitsch PetscCall(PetscHeaderDestroy(sf)); 2493ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 25095fce210SBarry Smith } 25195fce210SBarry Smith 252d71ae5a4SJacob Faibussowitsch static PetscErrorCode PetscSFCheckGraphValid_Private(PetscSF sf) 253d71ae5a4SJacob Faibussowitsch { 254c4e6a40aSLawrence Mitchell PetscInt i, nleaves; 255c4e6a40aSLawrence Mitchell PetscMPIInt size; 256c4e6a40aSLawrence Mitchell const PetscInt *ilocal; 257c4e6a40aSLawrence Mitchell const PetscSFNode *iremote; 258c4e6a40aSLawrence Mitchell 259c4e6a40aSLawrence Mitchell PetscFunctionBegin; 2603ba16761SJacob Faibussowitsch if (!sf->graphset || !PetscDefined(USE_DEBUG)) PetscFunctionReturn(PETSC_SUCCESS); 2619566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sf, NULL, &nleaves, &ilocal, &iremote)); 2629566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)sf), &size)); 263c4e6a40aSLawrence Mitchell for (i = 0; i < nleaves; i++) { 264c4e6a40aSLawrence Mitchell const PetscInt rank = iremote[i].rank; 265c4e6a40aSLawrence Mitchell const PetscInt remote = iremote[i].index; 266c4e6a40aSLawrence Mitchell const PetscInt leaf = ilocal ? ilocal[i] : i; 267c9cc58a2SBarry Smith PetscCheck(rank >= 0 && rank < size, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Provided rank (%" PetscInt_FMT ") for remote %" PetscInt_FMT " is invalid, should be in [0, %d)", rank, i, size); 26808401ef6SPierre Jolivet PetscCheck(remote >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Provided index (%" PetscInt_FMT ") for remote %" PetscInt_FMT " is invalid, should be >= 0", remote, i); 26908401ef6SPierre Jolivet PetscCheck(leaf >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Provided location (%" PetscInt_FMT ") for leaf %" PetscInt_FMT " is invalid, should be >= 0", leaf, i); 270c4e6a40aSLawrence Mitchell } 2713ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 272c4e6a40aSLawrence Mitchell } 273c4e6a40aSLawrence Mitchell 27495fce210SBarry Smith /*@ 27520662ed9SBarry Smith PetscSFSetUp - set up communication structures for a `PetscSF`, after this is done it may be used to perform communication 27695fce210SBarry Smith 27795fce210SBarry Smith Collective 27895fce210SBarry Smith 2794165533cSJose E. Roman Input Parameter: 28095fce210SBarry Smith . sf - star forest communication object 28195fce210SBarry Smith 28295fce210SBarry Smith Level: beginner 28395fce210SBarry Smith 28420662ed9SBarry Smith .seealso: `PetscSF`, `PetscSFType`, `PetscSFSetFromOptions()`, `PetscSFSetType()` 28595fce210SBarry Smith @*/ 286d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFSetUp(PetscSF sf) 287d71ae5a4SJacob Faibussowitsch { 28895fce210SBarry Smith PetscFunctionBegin; 28929046d53SLisandro Dalcin PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 29029046d53SLisandro Dalcin PetscSFCheckGraphSet(sf, 1); 2913ba16761SJacob Faibussowitsch if (sf->setupcalled) PetscFunctionReturn(PETSC_SUCCESS); 2929566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(PETSCSF_SetUp, sf, 0, 0, 0)); 2939566063dSJacob Faibussowitsch PetscCall(PetscSFCheckGraphValid_Private(sf)); 2949566063dSJacob Faibussowitsch if (!((PetscObject)sf)->type_name) PetscCall(PetscSFSetType(sf, PETSCSFBASIC)); /* Zero all sf->ops */ 295dbbe0bcdSBarry Smith PetscTryTypeMethod(sf, SetUp); 29620c24465SJunchao Zhang #if defined(PETSC_HAVE_CUDA) 29720c24465SJunchao Zhang if (sf->backend == PETSCSF_BACKEND_CUDA) { 29871438e86SJunchao Zhang sf->ops->Malloc = PetscSFMalloc_CUDA; 29971438e86SJunchao Zhang sf->ops->Free = PetscSFFree_CUDA; 30020c24465SJunchao Zhang } 30120c24465SJunchao Zhang #endif 30259af0bd3SScott Kruger #if defined(PETSC_HAVE_HIP) 30359af0bd3SScott Kruger if (sf->backend == PETSCSF_BACKEND_HIP) { 30459af0bd3SScott Kruger sf->ops->Malloc = PetscSFMalloc_HIP; 30559af0bd3SScott Kruger sf->ops->Free = PetscSFFree_HIP; 30659af0bd3SScott Kruger } 30759af0bd3SScott Kruger #endif 30820c24465SJunchao Zhang 30920c24465SJunchao Zhang #if defined(PETSC_HAVE_KOKKOS) 31020c24465SJunchao Zhang if (sf->backend == PETSCSF_BACKEND_KOKKOS) { 31120c24465SJunchao Zhang sf->ops->Malloc = PetscSFMalloc_Kokkos; 31220c24465SJunchao Zhang sf->ops->Free = PetscSFFree_Kokkos; 31320c24465SJunchao Zhang } 31420c24465SJunchao Zhang #endif 3159566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(PETSCSF_SetUp, sf, 0, 0, 0)); 31695fce210SBarry Smith sf->setupcalled = PETSC_TRUE; 3173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 31895fce210SBarry Smith } 31995fce210SBarry Smith 3208af6ec1cSBarry Smith /*@ 321cab54364SBarry Smith PetscSFSetFromOptions - set `PetscSF` options using the options database 32295fce210SBarry Smith 32395fce210SBarry Smith Logically Collective 32495fce210SBarry Smith 3254165533cSJose E. Roman Input Parameter: 32695fce210SBarry Smith . sf - star forest 32795fce210SBarry Smith 32895fce210SBarry Smith Options Database Keys: 32920662ed9SBarry Smith + -sf_type - implementation type, see `PetscSFSetType()` 33051ccb202SJunchao Zhang . -sf_rank_order - sort composite points for gathers and scatters in rank order, gathers are non-deterministic otherwise 33120662ed9SBarry Smith . -sf_use_default_stream - Assume callers of `PetscSF` computed the input root/leafdata with the default CUDA stream. `PetscSF` will also 33220662ed9SBarry Smith use the default stream to process data. Therefore, no stream synchronization is needed between `PetscSF` and its caller (default: true). 33320662ed9SBarry Smith If true, this option only works with `-use_gpu_aware_mpi 1`. 33420662ed9SBarry Smith . -sf_use_stream_aware_mpi - Assume the underlying MPI is CUDA-stream aware and `PetscSF` won't sync streams for send/recv buffers passed to MPI (default: false). 33520662ed9SBarry Smith If true, this option only works with `-use_gpu_aware_mpi 1`. 33695fce210SBarry Smith 3376497c311SBarry Smith - -sf_backend <cuda,hip,kokkos> - Select the device backend`PetscSF` uses. Currently `PetscSF` has these backends: cuda - hip and Kokkos. 33859af0bd3SScott Kruger On CUDA (HIP) devices, one can choose cuda (hip) or kokkos with the default being kokkos. On other devices, 33920c24465SJunchao Zhang the only available is kokkos. 34020c24465SJunchao Zhang 34195fce210SBarry Smith Level: intermediate 342cab54364SBarry Smith 343cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFCreate()`, `PetscSFSetType()` 34495fce210SBarry Smith @*/ 345d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFSetFromOptions(PetscSF sf) 346d71ae5a4SJacob Faibussowitsch { 34795fce210SBarry Smith PetscSFType deft; 34895fce210SBarry Smith char type[256]; 34995fce210SBarry Smith PetscBool flg; 35095fce210SBarry Smith 35195fce210SBarry Smith PetscFunctionBegin; 35295fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 353d0609cedSBarry Smith PetscObjectOptionsBegin((PetscObject)sf); 35495fce210SBarry Smith deft = ((PetscObject)sf)->type_name ? ((PetscObject)sf)->type_name : PETSCSFBASIC; 3559566063dSJacob Faibussowitsch PetscCall(PetscOptionsFList("-sf_type", "PetscSF implementation type", "PetscSFSetType", PetscSFList, deft, type, sizeof(type), &flg)); 3569566063dSJacob Faibussowitsch PetscCall(PetscSFSetType(sf, flg ? type : deft)); 3579566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-sf_rank_order", "sort composite points for gathers and scatters in rank order, gathers are non-deterministic otherwise", "PetscSFSetRankOrder", sf->rankorder, &sf->rankorder, NULL)); 3587fd2d3dbSJunchao Zhang #if defined(PETSC_HAVE_DEVICE) 35920c24465SJunchao Zhang { 36020c24465SJunchao Zhang char backendstr[32] = {0}; 36159af0bd3SScott Kruger PetscBool isCuda = PETSC_FALSE, isHip = PETSC_FALSE, isKokkos = PETSC_FALSE, set; 36220c24465SJunchao Zhang /* Change the defaults set in PetscSFCreate() with command line options */ 363d5b43468SJose E. Roman PetscCall(PetscOptionsBool("-sf_unknown_input_stream", "SF root/leafdata is computed on arbitrary streams unknown to SF", "PetscSFSetFromOptions", sf->unknown_input_stream, &sf->unknown_input_stream, NULL)); 3649566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-sf_use_stream_aware_mpi", "Assume the underlying MPI is cuda-stream aware", "PetscSFSetFromOptions", sf->use_stream_aware_mpi, &sf->use_stream_aware_mpi, NULL)); 3659566063dSJacob Faibussowitsch PetscCall(PetscOptionsString("-sf_backend", "Select the device backend SF uses", "PetscSFSetFromOptions", NULL, backendstr, sizeof(backendstr), &set)); 3669566063dSJacob Faibussowitsch PetscCall(PetscStrcasecmp("cuda", backendstr, &isCuda)); 3679566063dSJacob Faibussowitsch PetscCall(PetscStrcasecmp("kokkos", backendstr, &isKokkos)); 3689566063dSJacob Faibussowitsch PetscCall(PetscStrcasecmp("hip", backendstr, &isHip)); 36959af0bd3SScott Kruger #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) 37020c24465SJunchao Zhang if (isCuda) sf->backend = PETSCSF_BACKEND_CUDA; 37120c24465SJunchao Zhang else if (isKokkos) sf->backend = PETSCSF_BACKEND_KOKKOS; 37259af0bd3SScott Kruger else if (isHip) sf->backend = PETSCSF_BACKEND_HIP; 37328b400f6SJacob Faibussowitsch else PetscCheck(!set, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "-sf_backend %s is not supported. You may choose cuda, hip or kokkos (if installed)", backendstr); 37420c24465SJunchao Zhang #elif defined(PETSC_HAVE_KOKKOS) 37508401ef6SPierre Jolivet PetscCheck(!set || isKokkos, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "-sf_backend %s is not supported. You can only choose kokkos", backendstr); 37620c24465SJunchao Zhang #endif 377715b587bSJunchao Zhang 378715b587bSJunchao Zhang #if defined(PETSC_HAVE_CUDA) && defined(PETSC_HAVE_MPIX_STREAM) 379715b587bSJunchao Zhang if (sf->use_stream_aware_mpi) { 380715b587bSJunchao Zhang MPI_Info info; 381715b587bSJunchao Zhang 382715b587bSJunchao Zhang PetscCallMPI(MPI_Info_create(&info)); 383715b587bSJunchao Zhang PetscCallMPI(MPI_Info_set(info, "type", "cudaStream_t")); 384715b587bSJunchao Zhang PetscCallMPI(MPIX_Info_set_hex(info, "value", &PetscDefaultCudaStream, sizeof(PetscDefaultCudaStream))); 385715b587bSJunchao Zhang PetscCallMPI(MPIX_Stream_create(info, &sf->mpi_stream)); 386715b587bSJunchao Zhang PetscCallMPI(MPI_Info_free(&info)); 387715b587bSJunchao Zhang PetscCallMPI(MPIX_Stream_comm_create(PetscObjectComm((PetscObject)sf), sf->mpi_stream, &sf->stream_comm)); 388715b587bSJunchao Zhang } 389715b587bSJunchao Zhang #endif 39020c24465SJunchao Zhang } 391c2a741eeSJunchao Zhang #endif 392dbbe0bcdSBarry Smith PetscTryTypeMethod(sf, SetFromOptions, PetscOptionsObject); 393d0609cedSBarry Smith PetscOptionsEnd(); 3943ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 39595fce210SBarry Smith } 39695fce210SBarry Smith 39729046d53SLisandro Dalcin /*@ 39895fce210SBarry Smith PetscSFSetRankOrder - sort multi-points for gathers and scatters by rank order 39995fce210SBarry Smith 40095fce210SBarry Smith Logically Collective 40195fce210SBarry Smith 4024165533cSJose E. Roman Input Parameters: 40395fce210SBarry Smith + sf - star forest 404cab54364SBarry Smith - flg - `PETSC_TRUE` to sort, `PETSC_FALSE` to skip sorting (lower setup cost, but non-deterministic) 40595fce210SBarry Smith 40695fce210SBarry Smith Level: advanced 40795fce210SBarry Smith 40820662ed9SBarry Smith .seealso: `PetscSF`, `PetscSFType`, `PetscSFGatherBegin()`, `PetscSFScatterBegin()` 40995fce210SBarry Smith @*/ 410d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFSetRankOrder(PetscSF sf, PetscBool flg) 411d71ae5a4SJacob Faibussowitsch { 41295fce210SBarry Smith PetscFunctionBegin; 41395fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 41495fce210SBarry Smith PetscValidLogicalCollectiveBool(sf, flg, 2); 41528b400f6SJacob Faibussowitsch PetscCheck(!sf->multi, PetscObjectComm((PetscObject)sf), PETSC_ERR_ARG_WRONGSTATE, "Rank ordering must be set before first call to PetscSFGatherBegin() or PetscSFScatterBegin()"); 41695fce210SBarry Smith sf->rankorder = flg; 4173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 41895fce210SBarry Smith } 41995fce210SBarry Smith 4205d83a8b1SBarry Smith /*@ 42195fce210SBarry Smith PetscSFSetGraph - Set a parallel star forest 42295fce210SBarry Smith 42395fce210SBarry Smith Collective 42495fce210SBarry Smith 4254165533cSJose E. Roman Input Parameters: 42695fce210SBarry Smith + sf - star forest 42795fce210SBarry Smith . nroots - number of root vertices on the current process (these are possible targets for other process to attach leaves) 42895fce210SBarry Smith . nleaves - number of leaf vertices on the current process, each of these references a root on any process 42920662ed9SBarry Smith . ilocal - locations of leaves in leafdata buffers, pass `NULL` for contiguous storage (locations must be >= 0, enforced 430c4e6a40aSLawrence Mitchell during setup in debug mode) 43120662ed9SBarry Smith . localmode - copy mode for `ilocal` 432c4e6a40aSLawrence Mitchell . iremote - remote locations of root vertices for each leaf on the current process (locations must be >= 0, enforced 433c4e6a40aSLawrence Mitchell during setup in debug mode) 43420662ed9SBarry Smith - remotemode - copy mode for `iremote` 43595fce210SBarry Smith 43695fce210SBarry Smith Level: intermediate 43795fce210SBarry Smith 43895452b02SPatrick Sanan Notes: 43920662ed9SBarry Smith Leaf indices in `ilocal` must be unique, otherwise an error occurs. 44038ab3f8aSBarry Smith 44120662ed9SBarry Smith Input arrays `ilocal` and `iremote` follow the `PetscCopyMode` semantics. 44220662ed9SBarry Smith In particular, if `localmode` or `remotemode` is `PETSC_OWN_POINTER` or `PETSC_USE_POINTER`, 443db2b9530SVaclav Hapla PETSc might modify the respective array; 44420662ed9SBarry Smith if `PETSC_USE_POINTER`, the user must delete the array after `PetscSFDestroy()`. 445cab54364SBarry Smith Only if `PETSC_COPY_VALUES` is used, the respective array is guaranteed to stay intact and a const array can be passed (but a cast to non-const is needed). 446db2b9530SVaclav Hapla 44738b5cf2dSJacob Faibussowitsch Fortran Notes: 44820662ed9SBarry Smith In Fortran you must use `PETSC_COPY_VALUES` for `localmode` and `remotemode`. 449c4e6a40aSLawrence Mitchell 45038b5cf2dSJacob Faibussowitsch Developer Notes: 451db2b9530SVaclav Hapla We sort leaves to check for duplicates and contiguousness and to find minleaf/maxleaf. 45220662ed9SBarry Smith This also allows to compare leaf sets of two `PetscSF`s easily. 45372bf8598SVaclav Hapla 45420662ed9SBarry Smith .seealso: `PetscSF`, `PetscSFType`, `PetscSFCreate()`, `PetscSFView()`, `PetscSFGetGraph()` 45595fce210SBarry Smith @*/ 456d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFSetGraph(PetscSF sf, PetscInt nroots, PetscInt nleaves, PetscInt *ilocal, PetscCopyMode localmode, PetscSFNode *iremote, PetscCopyMode remotemode) 457d71ae5a4SJacob Faibussowitsch { 458db2b9530SVaclav Hapla PetscBool unique, contiguous; 45995fce210SBarry Smith 46095fce210SBarry Smith PetscFunctionBegin; 46195fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 4624f572ea9SToby Isaac if (nleaves > 0 && ilocal) PetscAssertPointer(ilocal, 4); 4634f572ea9SToby Isaac if (nleaves > 0) PetscAssertPointer(iremote, 6); 46408401ef6SPierre Jolivet PetscCheck(nroots >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "nroots %" PetscInt_FMT ", cannot be negative", nroots); 46508401ef6SPierre Jolivet PetscCheck(nleaves >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "nleaves %" PetscInt_FMT ", cannot be negative", nleaves); 4668da24d32SBarry Smith /* enums may be handled as unsigned by some compilers, NVHPC for example, the int cast 4678da24d32SBarry Smith * below is to prevent NVHPC from warning about meaningless comparison of unsigned with zero */ 4688da24d32SBarry Smith PetscCheck((int)localmode >= PETSC_COPY_VALUES && localmode <= PETSC_USE_POINTER, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Wrong localmode %d", localmode); 4698da24d32SBarry Smith PetscCheck((int)remotemode >= PETSC_COPY_VALUES && remotemode <= PETSC_USE_POINTER, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Wrong remotemode %d", remotemode); 47029046d53SLisandro Dalcin 4712a67d2daSStefano Zampini if (sf->nroots >= 0) { /* Reset only if graph already set */ 4729566063dSJacob Faibussowitsch PetscCall(PetscSFReset(sf)); 4732a67d2daSStefano Zampini } 4742a67d2daSStefano Zampini 4759566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(PETSCSF_SetGraph, sf, 0, 0, 0)); 4766497c311SBarry Smith if (PetscDefined(USE_DEBUG)) { 4776497c311SBarry Smith PetscMPIInt size; 4786497c311SBarry Smith 4796497c311SBarry Smith PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)sf), &size)); 4806497c311SBarry Smith for (PetscInt i = 0; i < nleaves; i++) { PetscCheck(iremote[i].rank >= -1 && iremote[i].rank < size, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "iremote contains incorrect rank values"); } 4816497c311SBarry Smith } 48229046d53SLisandro Dalcin 48395fce210SBarry Smith sf->nroots = nroots; 48495fce210SBarry Smith sf->nleaves = nleaves; 48529046d53SLisandro Dalcin 486db2b9530SVaclav Hapla if (localmode == PETSC_COPY_VALUES && ilocal) { 487db2b9530SVaclav Hapla PetscInt *tlocal = NULL; 488db2b9530SVaclav Hapla 4899566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nleaves, &tlocal)); 4909566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(tlocal, ilocal, nleaves)); 491db2b9530SVaclav Hapla ilocal = tlocal; 492db2b9530SVaclav Hapla } 493db2b9530SVaclav Hapla if (remotemode == PETSC_COPY_VALUES) { 494db2b9530SVaclav Hapla PetscSFNode *tremote = NULL; 495db2b9530SVaclav Hapla 4969566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nleaves, &tremote)); 4979566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(tremote, iremote, nleaves)); 498db2b9530SVaclav Hapla iremote = tremote; 499db2b9530SVaclav Hapla } 500db2b9530SVaclav Hapla 50129046d53SLisandro Dalcin if (nleaves && ilocal) { 502db2b9530SVaclav Hapla PetscSFNode work; 503db2b9530SVaclav Hapla 5049566063dSJacob Faibussowitsch PetscCall(PetscSortIntWithDataArray(nleaves, ilocal, iremote, sizeof(PetscSFNode), &work)); 5059566063dSJacob Faibussowitsch PetscCall(PetscSortedCheckDupsInt(nleaves, ilocal, &unique)); 506db2b9530SVaclav Hapla unique = PetscNot(unique); 507db2b9530SVaclav Hapla PetscCheck(sf->allow_multi_leaves || unique, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Input ilocal has duplicate entries which is not allowed for this PetscSF"); 508db2b9530SVaclav Hapla sf->minleaf = ilocal[0]; 509db2b9530SVaclav Hapla sf->maxleaf = ilocal[nleaves - 1]; 510db2b9530SVaclav Hapla contiguous = (PetscBool)(unique && ilocal[0] == 0 && ilocal[nleaves - 1] == nleaves - 1); 51129046d53SLisandro Dalcin } else { 51229046d53SLisandro Dalcin sf->minleaf = 0; 51329046d53SLisandro Dalcin sf->maxleaf = nleaves - 1; 514db2b9530SVaclav Hapla unique = PETSC_TRUE; 515db2b9530SVaclav Hapla contiguous = PETSC_TRUE; 51629046d53SLisandro Dalcin } 51729046d53SLisandro Dalcin 518db2b9530SVaclav Hapla if (contiguous) { 519db2b9530SVaclav Hapla if (localmode == PETSC_USE_POINTER) { 520db2b9530SVaclav Hapla ilocal = NULL; 521db2b9530SVaclav Hapla } else { 5229566063dSJacob Faibussowitsch PetscCall(PetscFree(ilocal)); 523db2b9530SVaclav Hapla } 524db2b9530SVaclav Hapla } 525db2b9530SVaclav Hapla sf->mine = ilocal; 526db2b9530SVaclav Hapla if (localmode == PETSC_USE_POINTER) { 52729046d53SLisandro Dalcin sf->mine_alloc = NULL; 528db2b9530SVaclav Hapla } else { 529db2b9530SVaclav Hapla sf->mine_alloc = ilocal; 53095fce210SBarry Smith } 5316497c311SBarry Smith if (PetscDefined(USE_DEBUG)) { 5326497c311SBarry Smith PetscMPIInt size; 5336497c311SBarry Smith 5346497c311SBarry Smith PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)sf), &size)); 5356497c311SBarry Smith for (PetscInt i = 0; i < nleaves; i++) { PetscCheck(iremote[i].rank >= -1 && iremote[i].rank < size, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "iremote contains incorrect rank values"); } 5366497c311SBarry Smith } 537db2b9530SVaclav Hapla sf->remote = iremote; 538db2b9530SVaclav Hapla if (remotemode == PETSC_USE_POINTER) { 53929046d53SLisandro Dalcin sf->remote_alloc = NULL; 540db2b9530SVaclav Hapla } else { 541db2b9530SVaclav Hapla sf->remote_alloc = iremote; 54295fce210SBarry Smith } 5439566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(PETSCSF_SetGraph, sf, 0, 0, 0)); 54429046d53SLisandro Dalcin sf->graphset = PETSC_TRUE; 5453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 54695fce210SBarry Smith } 54795fce210SBarry Smith 54829046d53SLisandro Dalcin /*@ 549cab54364SBarry Smith PetscSFSetGraphWithPattern - Sets the graph of a `PetscSF` with a specific pattern 550dd5b3ca6SJunchao Zhang 551dd5b3ca6SJunchao Zhang Collective 552dd5b3ca6SJunchao Zhang 553dd5b3ca6SJunchao Zhang Input Parameters: 554cab54364SBarry Smith + sf - The `PetscSF` 555cab54364SBarry Smith . map - Layout of roots over all processes (insignificant when pattern is `PETSCSF_PATTERN_ALLTOALL`) 556cab54364SBarry Smith - pattern - One of `PETSCSF_PATTERN_ALLGATHER`, `PETSCSF_PATTERN_GATHER`, `PETSCSF_PATTERN_ALLTOALL` 557cab54364SBarry Smith 558cab54364SBarry Smith Level: intermediate 559dd5b3ca6SJunchao Zhang 560dd5b3ca6SJunchao Zhang Notes: 56120662ed9SBarry Smith It is easier to explain `PetscSFPattern` using vectors. Suppose we have an MPI vector `x` and its `PetscLayout` is `map`. 56220662ed9SBarry Smith `n` and `N` are the local and global sizes of `x` respectively. 563dd5b3ca6SJunchao Zhang 56420662ed9SBarry Smith With `PETSCSF_PATTERN_ALLGATHER`, the routine creates a graph that if one does `PetscSFBcastBegin()`/`PetscSFBcastEnd()` on it, it will copy `x` to 56520662ed9SBarry Smith sequential vectors `y` on all MPI processes. 566dd5b3ca6SJunchao Zhang 56720662ed9SBarry Smith With `PETSCSF_PATTERN_GATHER`, the routine creates a graph that if one does `PetscSFBcastBegin()`/`PetscSFBcastEnd()` on it, it will copy `x` to a 56820662ed9SBarry Smith sequential vector `y` on rank 0. 569dd5b3ca6SJunchao Zhang 57020662ed9SBarry Smith In above cases, entries of `x` are roots and entries of `y` are leaves. 571dd5b3ca6SJunchao Zhang 57220662ed9SBarry Smith With `PETSCSF_PATTERN_ALLTOALL`, map is insignificant. Suppose NP is size of `sf`'s communicator. The routine 573dd5b3ca6SJunchao Zhang creates a graph that every rank has NP leaves and NP roots. On rank i, its leaf j is connected to root i 574cab54364SBarry Smith of rank j. Here 0 <=i,j<NP. It is a kind of `MPI_Alltoall()` with sendcount/recvcount being 1. Note that it does 575dd5b3ca6SJunchao Zhang not mean one can not send multiple items. One just needs to create a new MPI datatype for the mulptiple data 576cab54364SBarry Smith items with `MPI_Type_contiguous` and use that as the <unit> argument in SF routines. 577dd5b3ca6SJunchao Zhang 578dd5b3ca6SJunchao Zhang In this case, roots and leaves are symmetric. 579dd5b3ca6SJunchao Zhang 580cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFCreate()`, `PetscSFView()`, `PetscSFGetGraph()` 581dd5b3ca6SJunchao Zhang @*/ 582d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFSetGraphWithPattern(PetscSF sf, PetscLayout map, PetscSFPattern pattern) 583d71ae5a4SJacob Faibussowitsch { 584dd5b3ca6SJunchao Zhang MPI_Comm comm; 585dd5b3ca6SJunchao Zhang PetscInt n, N, res[2]; 586dd5b3ca6SJunchao Zhang PetscMPIInt rank, size; 587dd5b3ca6SJunchao Zhang PetscSFType type; 588dd5b3ca6SJunchao Zhang 589dd5b3ca6SJunchao Zhang PetscFunctionBegin; 5902abc8c78SJacob Faibussowitsch PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 5914f572ea9SToby Isaac if (pattern != PETSCSF_PATTERN_ALLTOALL) PetscAssertPointer(map, 2); 5929566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)sf, &comm)); 5932c71b3e2SJacob Faibussowitsch PetscCheck(pattern >= PETSCSF_PATTERN_ALLGATHER && pattern <= PETSCSF_PATTERN_ALLTOALL, comm, PETSC_ERR_ARG_OUTOFRANGE, "Unsupported PetscSFPattern %d", pattern); 5949566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 5959566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 596dd5b3ca6SJunchao Zhang 597dd5b3ca6SJunchao Zhang if (pattern == PETSCSF_PATTERN_ALLTOALL) { 598dd5b3ca6SJunchao Zhang type = PETSCSFALLTOALL; 5999566063dSJacob Faibussowitsch PetscCall(PetscLayoutCreate(comm, &sf->map)); 6009566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetLocalSize(sf->map, size)); 6019566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetSize(sf->map, ((PetscInt)size) * size)); 6029566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(sf->map)); 603dd5b3ca6SJunchao Zhang } else { 6049566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetLocalSize(map, &n)); 6059566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetSize(map, &N)); 606dd5b3ca6SJunchao Zhang res[0] = n; 607dd5b3ca6SJunchao Zhang res[1] = -n; 608dd5b3ca6SJunchao Zhang /* Check if n are same over all ranks so that we can optimize it */ 6091c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(MPI_IN_PLACE, res, 2, MPIU_INT, MPI_MAX, comm)); 610dd5b3ca6SJunchao Zhang if (res[0] == -res[1]) { /* same n */ 611dd5b3ca6SJunchao Zhang type = (pattern == PETSCSF_PATTERN_ALLGATHER) ? PETSCSFALLGATHER : PETSCSFGATHER; 612dd5b3ca6SJunchao Zhang } else { 613dd5b3ca6SJunchao Zhang type = (pattern == PETSCSF_PATTERN_ALLGATHER) ? PETSCSFALLGATHERV : PETSCSFGATHERV; 614dd5b3ca6SJunchao Zhang } 6159566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(map, &sf->map)); 616dd5b3ca6SJunchao Zhang } 6179566063dSJacob Faibussowitsch PetscCall(PetscSFSetType(sf, type)); 618dd5b3ca6SJunchao Zhang 619dd5b3ca6SJunchao Zhang sf->pattern = pattern; 620dd5b3ca6SJunchao Zhang sf->mine = NULL; /* Contiguous */ 621dd5b3ca6SJunchao Zhang 622dd5b3ca6SJunchao Zhang /* Set nleaves, nroots here in case user calls PetscSFGetGraph, which is legal to call even before PetscSFSetUp is called. 623dd5b3ca6SJunchao Zhang Also set other easy stuff. 624dd5b3ca6SJunchao Zhang */ 625dd5b3ca6SJunchao Zhang if (pattern == PETSCSF_PATTERN_ALLGATHER) { 626dd5b3ca6SJunchao Zhang sf->nleaves = N; 627dd5b3ca6SJunchao Zhang sf->nroots = n; 628dd5b3ca6SJunchao Zhang sf->nranks = size; 629dd5b3ca6SJunchao Zhang sf->minleaf = 0; 630dd5b3ca6SJunchao Zhang sf->maxleaf = N - 1; 631dd5b3ca6SJunchao Zhang } else if (pattern == PETSCSF_PATTERN_GATHER) { 632dd5b3ca6SJunchao Zhang sf->nleaves = rank ? 0 : N; 633dd5b3ca6SJunchao Zhang sf->nroots = n; 634dd5b3ca6SJunchao Zhang sf->nranks = rank ? 0 : size; 635dd5b3ca6SJunchao Zhang sf->minleaf = 0; 636dd5b3ca6SJunchao Zhang sf->maxleaf = rank ? -1 : N - 1; 637dd5b3ca6SJunchao Zhang } else if (pattern == PETSCSF_PATTERN_ALLTOALL) { 638dd5b3ca6SJunchao Zhang sf->nleaves = size; 639dd5b3ca6SJunchao Zhang sf->nroots = size; 640dd5b3ca6SJunchao Zhang sf->nranks = size; 641dd5b3ca6SJunchao Zhang sf->minleaf = 0; 642dd5b3ca6SJunchao Zhang sf->maxleaf = size - 1; 643dd5b3ca6SJunchao Zhang } 644dd5b3ca6SJunchao Zhang sf->ndranks = 0; /* We do not need to separate out distinguished ranks for patterned graphs to improve communication performance */ 645dd5b3ca6SJunchao Zhang sf->graphset = PETSC_TRUE; 6463ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 647dd5b3ca6SJunchao Zhang } 648dd5b3ca6SJunchao Zhang 649dd5b3ca6SJunchao Zhang /*@ 650cab54364SBarry Smith PetscSFCreateInverseSF - given a `PetscSF` in which all vertices have degree 1, creates the inverse map 65195fce210SBarry Smith 65295fce210SBarry Smith Collective 65395fce210SBarry Smith 6544165533cSJose E. Roman Input Parameter: 65595fce210SBarry Smith . sf - star forest to invert 65695fce210SBarry Smith 6574165533cSJose E. Roman Output Parameter: 65820662ed9SBarry Smith . isf - inverse of `sf` 6594165533cSJose E. Roman 66095fce210SBarry Smith Level: advanced 66195fce210SBarry Smith 66295fce210SBarry Smith Notes: 66395fce210SBarry Smith All roots must have degree 1. 66495fce210SBarry Smith 66595fce210SBarry Smith The local space may be a permutation, but cannot be sparse. 66695fce210SBarry Smith 66720662ed9SBarry Smith .seealso: `PetscSF`, `PetscSFType`, `PetscSFSetGraph()` 66895fce210SBarry Smith @*/ 669d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFCreateInverseSF(PetscSF sf, PetscSF *isf) 670d71ae5a4SJacob Faibussowitsch { 67195fce210SBarry Smith PetscMPIInt rank; 67295fce210SBarry Smith PetscInt i, nroots, nleaves, maxlocal, count, *newilocal; 67395fce210SBarry Smith const PetscInt *ilocal; 67495fce210SBarry Smith PetscSFNode *roots, *leaves; 67595fce210SBarry Smith 67695fce210SBarry Smith PetscFunctionBegin; 67729046d53SLisandro Dalcin PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 67829046d53SLisandro Dalcin PetscSFCheckGraphSet(sf, 1); 6794f572ea9SToby Isaac PetscAssertPointer(isf, 2); 68029046d53SLisandro Dalcin 6819566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sf, &nroots, &nleaves, &ilocal, NULL)); 68229046d53SLisandro Dalcin maxlocal = sf->maxleaf + 1; /* TODO: We should use PetscSFGetLeafRange() */ 68329046d53SLisandro Dalcin 6849566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)sf), &rank)); 6859566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(nroots, &roots, maxlocal, &leaves)); 686ae9aee6dSMatthew G. Knepley for (i = 0; i < maxlocal; i++) { 68795fce210SBarry Smith leaves[i].rank = rank; 68895fce210SBarry Smith leaves[i].index = i; 68995fce210SBarry Smith } 69095fce210SBarry Smith for (i = 0; i < nroots; i++) { 69195fce210SBarry Smith roots[i].rank = -1; 69295fce210SBarry Smith roots[i].index = -1; 69395fce210SBarry Smith } 6946497c311SBarry Smith PetscCall(PetscSFReduceBegin(sf, MPIU_SF_NODE, leaves, roots, MPI_REPLACE)); 6956497c311SBarry Smith PetscCall(PetscSFReduceEnd(sf, MPIU_SF_NODE, leaves, roots, MPI_REPLACE)); 69695fce210SBarry Smith 69795fce210SBarry Smith /* Check whether our leaves are sparse */ 6989371c9d4SSatish Balay for (i = 0, count = 0; i < nroots; i++) 6999371c9d4SSatish Balay if (roots[i].rank >= 0) count++; 70095fce210SBarry Smith if (count == nroots) newilocal = NULL; 7019371c9d4SSatish Balay else { /* Index for sparse leaves and compact "roots" array (which is to become our leaves). */ PetscCall(PetscMalloc1(count, &newilocal)); 70295fce210SBarry Smith for (i = 0, count = 0; i < nroots; i++) { 70395fce210SBarry Smith if (roots[i].rank >= 0) { 70495fce210SBarry Smith newilocal[count] = i; 70595fce210SBarry Smith roots[count].rank = roots[i].rank; 70695fce210SBarry Smith roots[count].index = roots[i].index; 70795fce210SBarry Smith count++; 70895fce210SBarry Smith } 70995fce210SBarry Smith } 71095fce210SBarry Smith } 71195fce210SBarry Smith 7129566063dSJacob Faibussowitsch PetscCall(PetscSFDuplicate(sf, PETSCSF_DUPLICATE_CONFONLY, isf)); 7139566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(*isf, maxlocal, count, newilocal, PETSC_OWN_POINTER, roots, PETSC_COPY_VALUES)); 7149566063dSJacob Faibussowitsch PetscCall(PetscFree2(roots, leaves)); 7153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 71695fce210SBarry Smith } 71795fce210SBarry Smith 71895fce210SBarry Smith /*@ 719cab54364SBarry Smith PetscSFDuplicate - duplicate a `PetscSF`, optionally preserving rank connectivity and graph 72095fce210SBarry Smith 72195fce210SBarry Smith Collective 72295fce210SBarry Smith 7234165533cSJose E. Roman Input Parameters: 72495fce210SBarry Smith + sf - communication object to duplicate 725cab54364SBarry Smith - opt - `PETSCSF_DUPLICATE_CONFONLY`, `PETSCSF_DUPLICATE_RANKS`, or `PETSCSF_DUPLICATE_GRAPH` (see `PetscSFDuplicateOption`) 72695fce210SBarry Smith 7274165533cSJose E. Roman Output Parameter: 72895fce210SBarry Smith . newsf - new communication object 72995fce210SBarry Smith 73095fce210SBarry Smith Level: beginner 73195fce210SBarry Smith 73220662ed9SBarry Smith .seealso: `PetscSF`, `PetscSFType`, `PetscSFCreate()`, `PetscSFSetType()`, `PetscSFSetGraph()` 73395fce210SBarry Smith @*/ 734d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFDuplicate(PetscSF sf, PetscSFDuplicateOption opt, PetscSF *newsf) 735d71ae5a4SJacob Faibussowitsch { 73629046d53SLisandro Dalcin PetscSFType type; 73797929ea7SJunchao Zhang MPI_Datatype dtype = MPIU_SCALAR; 73895fce210SBarry Smith 73995fce210SBarry Smith PetscFunctionBegin; 74029046d53SLisandro Dalcin PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 74129046d53SLisandro Dalcin PetscValidLogicalCollectiveEnum(sf, opt, 2); 7424f572ea9SToby Isaac PetscAssertPointer(newsf, 3); 7439566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)sf), newsf)); 7449566063dSJacob Faibussowitsch PetscCall(PetscSFGetType(sf, &type)); 7459566063dSJacob Faibussowitsch if (type) PetscCall(PetscSFSetType(*newsf, type)); 74635cb6cd3SPierre Jolivet (*newsf)->allow_multi_leaves = sf->allow_multi_leaves; /* Dup this flag earlier since PetscSFSetGraph() below checks on this flag */ 74795fce210SBarry Smith if (opt == PETSCSF_DUPLICATE_GRAPH) { 748dd5b3ca6SJunchao Zhang PetscSFCheckGraphSet(sf, 1); 749dd5b3ca6SJunchao Zhang if (sf->pattern == PETSCSF_PATTERN_GENERAL) { 75095fce210SBarry Smith PetscInt nroots, nleaves; 75195fce210SBarry Smith const PetscInt *ilocal; 75295fce210SBarry Smith const PetscSFNode *iremote; 7539566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sf, &nroots, &nleaves, &ilocal, &iremote)); 7549566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(*newsf, nroots, nleaves, (PetscInt *)ilocal, PETSC_COPY_VALUES, (PetscSFNode *)iremote, PETSC_COPY_VALUES)); 755dd5b3ca6SJunchao Zhang } else { 7569566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphWithPattern(*newsf, sf->map, sf->pattern)); 757dd5b3ca6SJunchao Zhang } 75895fce210SBarry Smith } 75997929ea7SJunchao Zhang /* Since oldtype is committed, so is newtype, according to MPI */ 7609566063dSJacob Faibussowitsch if (sf->vscat.bs > 1) PetscCallMPI(MPI_Type_dup(sf->vscat.unit, &dtype)); 76197929ea7SJunchao Zhang (*newsf)->vscat.bs = sf->vscat.bs; 76297929ea7SJunchao Zhang (*newsf)->vscat.unit = dtype; 76397929ea7SJunchao Zhang (*newsf)->vscat.to_n = sf->vscat.to_n; 76497929ea7SJunchao Zhang (*newsf)->vscat.from_n = sf->vscat.from_n; 76597929ea7SJunchao Zhang /* Do not copy lsf. Build it on demand since it is rarely used */ 76697929ea7SJunchao Zhang 76720c24465SJunchao Zhang #if defined(PETSC_HAVE_DEVICE) 76820c24465SJunchao Zhang (*newsf)->backend = sf->backend; 76971438e86SJunchao Zhang (*newsf)->unknown_input_stream = sf->unknown_input_stream; 77020c24465SJunchao Zhang (*newsf)->use_gpu_aware_mpi = sf->use_gpu_aware_mpi; 77120c24465SJunchao Zhang (*newsf)->use_stream_aware_mpi = sf->use_stream_aware_mpi; 77220c24465SJunchao Zhang #endif 773dbbe0bcdSBarry Smith PetscTryTypeMethod(sf, Duplicate, opt, *newsf); 77420c24465SJunchao Zhang /* Don't do PetscSFSetUp() since the new sf's graph might have not been set. */ 7753ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 77695fce210SBarry Smith } 77795fce210SBarry Smith 77895fce210SBarry Smith /*@C 77995fce210SBarry Smith PetscSFGetGraph - Get the graph specifying a parallel star forest 78095fce210SBarry Smith 78195fce210SBarry Smith Not Collective 78295fce210SBarry Smith 7834165533cSJose E. Roman Input Parameter: 78495fce210SBarry Smith . sf - star forest 78595fce210SBarry Smith 7864165533cSJose E. Roman Output Parameters: 78795fce210SBarry Smith + nroots - number of root vertices on the current process (these are possible targets for other process to attach leaves) 78895fce210SBarry Smith . nleaves - number of leaf vertices on the current process, each of these references a root on any process 78920662ed9SBarry Smith . ilocal - locations of leaves in leafdata buffers (if returned value is `NULL`, it means leaves are in contiguous storage) 79095fce210SBarry Smith - iremote - remote locations of root vertices for each leaf on the current process 79195fce210SBarry Smith 792cab54364SBarry Smith Level: intermediate 793cab54364SBarry Smith 794373e0d91SLisandro Dalcin Notes: 79520662ed9SBarry Smith We are not currently requiring that the graph is set, thus returning `nroots` = -1 if it has not been set yet 796373e0d91SLisandro Dalcin 79720662ed9SBarry Smith The returned `ilocal` and `iremote` might contain values in different order than the input ones in `PetscSFSetGraph()` 798db2b9530SVaclav Hapla 7998dbb0df6SBarry Smith Fortran Notes: 80020662ed9SBarry Smith The returned `iremote` array is a copy and must be deallocated after use. Consequently, if you 80120662ed9SBarry Smith want to update the graph, you must call `PetscSFSetGraph()` after modifying the `iremote` array. 8028dbb0df6SBarry Smith 80320662ed9SBarry Smith To check for a `NULL` `ilocal` use 8048dbb0df6SBarry Smith $ if (loc(ilocal) == loc(PETSC_NULL_INTEGER)) then 805ca797d7aSLawrence Mitchell 80620662ed9SBarry Smith .seealso: `PetscSF`, `PetscSFType`, `PetscSFCreate()`, `PetscSFView()`, `PetscSFSetGraph()` 80795fce210SBarry Smith @*/ 808d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFGetGraph(PetscSF sf, PetscInt *nroots, PetscInt *nleaves, const PetscInt **ilocal, const PetscSFNode **iremote) 809d71ae5a4SJacob Faibussowitsch { 81095fce210SBarry Smith PetscFunctionBegin; 81195fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 812b8dee149SJunchao Zhang if (sf->ops->GetGraph) { 813f4f49eeaSPierre Jolivet PetscCall(sf->ops->GetGraph(sf, nroots, nleaves, ilocal, iremote)); 814b8dee149SJunchao Zhang } else { 81595fce210SBarry Smith if (nroots) *nroots = sf->nroots; 81695fce210SBarry Smith if (nleaves) *nleaves = sf->nleaves; 81795fce210SBarry Smith if (ilocal) *ilocal = sf->mine; 81895fce210SBarry Smith if (iremote) *iremote = sf->remote; 819b8dee149SJunchao Zhang } 8203ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 82195fce210SBarry Smith } 82295fce210SBarry Smith 82329046d53SLisandro Dalcin /*@ 82495fce210SBarry Smith PetscSFGetLeafRange - Get the active leaf ranges 82595fce210SBarry Smith 82695fce210SBarry Smith Not Collective 82795fce210SBarry Smith 8284165533cSJose E. Roman Input Parameter: 82995fce210SBarry Smith . sf - star forest 83095fce210SBarry Smith 8314165533cSJose E. Roman Output Parameters: 83220662ed9SBarry Smith + minleaf - minimum active leaf on this process. Returns 0 if there are no leaves. 83320662ed9SBarry Smith - maxleaf - maximum active leaf on this process. Returns -1 if there are no leaves. 83495fce210SBarry Smith 83595fce210SBarry Smith Level: developer 83695fce210SBarry Smith 83720662ed9SBarry Smith .seealso: `PetscSF`, `PetscSFType`, `PetscSFCreate()`, `PetscSFView()`, `PetscSFSetGraph()`, `PetscSFGetGraph()` 83895fce210SBarry Smith @*/ 839d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFGetLeafRange(PetscSF sf, PetscInt *minleaf, PetscInt *maxleaf) 840d71ae5a4SJacob Faibussowitsch { 84195fce210SBarry Smith PetscFunctionBegin; 84295fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 84329046d53SLisandro Dalcin PetscSFCheckGraphSet(sf, 1); 84495fce210SBarry Smith if (minleaf) *minleaf = sf->minleaf; 84595fce210SBarry Smith if (maxleaf) *maxleaf = sf->maxleaf; 8463ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 84795fce210SBarry Smith } 84895fce210SBarry Smith 849ffeef943SBarry Smith /*@ 850cab54364SBarry Smith PetscSFViewFromOptions - View a `PetscSF` based on arguments in the options database 851fe2efc57SMark 85220f4b53cSBarry Smith Collective 853fe2efc57SMark 854fe2efc57SMark Input Parameters: 855fe2efc57SMark + A - the star forest 856cab54364SBarry Smith . obj - Optional object that provides the prefix for the option names 857736c3998SJose E. Roman - name - command line option 858fe2efc57SMark 859fe2efc57SMark Level: intermediate 860cab54364SBarry Smith 86120662ed9SBarry Smith Note: 86220662ed9SBarry Smith See `PetscObjectViewFromOptions()` for possible `PetscViewer` and `PetscViewerFormat` 86320662ed9SBarry Smith 864db781477SPatrick Sanan .seealso: `PetscSF`, `PetscSFView`, `PetscObjectViewFromOptions()`, `PetscSFCreate()` 865fe2efc57SMark @*/ 866d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFViewFromOptions(PetscSF A, PetscObject obj, const char name[]) 867d71ae5a4SJacob Faibussowitsch { 868fe2efc57SMark PetscFunctionBegin; 869fe2efc57SMark PetscValidHeaderSpecific(A, PETSCSF_CLASSID, 1); 8709566063dSJacob Faibussowitsch PetscCall(PetscObjectViewFromOptions((PetscObject)A, obj, name)); 8713ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 872fe2efc57SMark } 873fe2efc57SMark 874ffeef943SBarry Smith /*@ 87595fce210SBarry Smith PetscSFView - view a star forest 87695fce210SBarry Smith 87795fce210SBarry Smith Collective 87895fce210SBarry Smith 8794165533cSJose E. Roman Input Parameters: 88095fce210SBarry Smith + sf - star forest 881cab54364SBarry Smith - viewer - viewer to display graph, for example `PETSC_VIEWER_STDOUT_WORLD` 88295fce210SBarry Smith 88395fce210SBarry Smith Level: beginner 88495fce210SBarry Smith 885cab54364SBarry Smith .seealso: `PetscSF`, `PetscViewer`, `PetscSFCreate()`, `PetscSFSetGraph()` 88695fce210SBarry Smith @*/ 887d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFView(PetscSF sf, PetscViewer viewer) 888d71ae5a4SJacob Faibussowitsch { 88995fce210SBarry Smith PetscBool iascii; 89095fce210SBarry Smith PetscViewerFormat format; 89195fce210SBarry Smith 89295fce210SBarry Smith PetscFunctionBegin; 89395fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 8949566063dSJacob Faibussowitsch if (!viewer) PetscCall(PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject)sf), &viewer)); 89595fce210SBarry Smith PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 89695fce210SBarry Smith PetscCheckSameComm(sf, 1, viewer, 2); 8979566063dSJacob Faibussowitsch if (sf->graphset) PetscCall(PetscSFSetUp(sf)); 8989566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 89953dd6d7dSJunchao Zhang if (iascii && viewer->format != PETSC_VIEWER_ASCII_MATLAB) { 90095fce210SBarry Smith PetscMPIInt rank; 9016497c311SBarry Smith PetscInt j; 90295fce210SBarry Smith 9039566063dSJacob Faibussowitsch PetscCall(PetscObjectPrintClassNamePrefixType((PetscObject)sf, viewer)); 9049566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushTab(viewer)); 905dd5b3ca6SJunchao Zhang if (sf->pattern == PETSCSF_PATTERN_GENERAL) { 90680153354SVaclav Hapla if (!sf->graphset) { 9079566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "PetscSFSetGraph() has not been called yet\n")); 9089566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopTab(viewer)); 9093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 91080153354SVaclav Hapla } 9119566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)sf), &rank)); 9129566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 9136497c311SBarry Smith PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Number of roots=%" PetscInt_FMT ", leaves=%" PetscInt_FMT ", remote ranks=%d\n", rank, sf->nroots, sf->nleaves, sf->nranks)); 9146497c311SBarry Smith for (PetscInt i = 0; i < sf->nleaves; i++) PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] %" PetscInt_FMT " <- (%d,%" PetscInt_FMT ")\n", rank, sf->mine ? sf->mine[i] : i, (PetscMPIInt)sf->remote[i].rank, sf->remote[i].index)); 9159566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 9169566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 91795fce210SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 91881bfa7aaSJed Brown PetscMPIInt *tmpranks, *perm; 9196497c311SBarry Smith 9209566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(sf->nranks, &tmpranks, sf->nranks, &perm)); 9219566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(tmpranks, sf->ranks, sf->nranks)); 9226497c311SBarry Smith for (PetscMPIInt i = 0; i < sf->nranks; i++) perm[i] = i; 9239566063dSJacob Faibussowitsch PetscCall(PetscSortMPIIntWithArray(sf->nranks, tmpranks, perm)); 9249566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Roots referenced by my leaves, by rank\n", rank)); 9256497c311SBarry Smith for (PetscMPIInt ii = 0; ii < sf->nranks; ii++) { 9266497c311SBarry Smith PetscMPIInt i = perm[ii]; 9276497c311SBarry Smith 9289566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] %d: %" PetscInt_FMT " edges\n", rank, sf->ranks[i], sf->roffset[i + 1] - sf->roffset[i])); 92948a46eb9SPierre Jolivet for (j = sf->roffset[i]; j < sf->roffset[i + 1]; j++) PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] %" PetscInt_FMT " <- %" PetscInt_FMT "\n", rank, sf->rmine[j], sf->rremote[j])); 93095fce210SBarry Smith } 9319566063dSJacob Faibussowitsch PetscCall(PetscFree2(tmpranks, perm)); 93295fce210SBarry Smith } 9339566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 9349566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 935dd5b3ca6SJunchao Zhang } 9369566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopTab(viewer)); 93795fce210SBarry Smith } 938dbbe0bcdSBarry Smith PetscTryTypeMethod(sf, View, viewer); 9393ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 94095fce210SBarry Smith } 94195fce210SBarry Smith 94295fce210SBarry Smith /*@C 943dec1416fSJunchao Zhang PetscSFGetRootRanks - Get root ranks and number of vertices referenced by leaves on this process 94495fce210SBarry Smith 94595fce210SBarry Smith Not Collective 94695fce210SBarry Smith 9474165533cSJose E. Roman Input Parameter: 94895fce210SBarry Smith . sf - star forest 94995fce210SBarry Smith 9504165533cSJose E. Roman Output Parameters: 95195fce210SBarry Smith + nranks - number of ranks referenced by local part 95220662ed9SBarry Smith . ranks - [`nranks`] array of ranks 95320662ed9SBarry Smith . roffset - [`nranks`+1] offset in `rmine`/`rremote` for each rank 9546497c311SBarry Smith . rmine - [`roffset`[`nranks`]] concatenated array holding local indices referencing each remote rank, or `NULL` 9556497c311SBarry Smith - rremote - [`roffset`[`nranks`]] concatenated array holding remote indices referenced for each remote rank, or `NULL` 95695fce210SBarry Smith 95795fce210SBarry Smith Level: developer 95895fce210SBarry Smith 959cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFGetLeafRanks()` 96095fce210SBarry Smith @*/ 9616497c311SBarry Smith PetscErrorCode PetscSFGetRootRanks(PetscSF sf, PetscMPIInt *nranks, const PetscMPIInt **ranks, const PetscInt **roffset, const PetscInt **rmine, const PetscInt **rremote) 962d71ae5a4SJacob Faibussowitsch { 96395fce210SBarry Smith PetscFunctionBegin; 96495fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 96528b400f6SJacob Faibussowitsch PetscCheck(sf->setupcalled, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Must call PetscSFSetUp() before obtaining ranks"); 966dec1416fSJunchao Zhang if (sf->ops->GetRootRanks) { 9679927e4dfSBarry Smith PetscUseTypeMethod(sf, GetRootRanks, nranks, ranks, roffset, rmine, rremote); 968dec1416fSJunchao Zhang } else { 969dec1416fSJunchao Zhang /* The generic implementation */ 97095fce210SBarry Smith if (nranks) *nranks = sf->nranks; 97195fce210SBarry Smith if (ranks) *ranks = sf->ranks; 97295fce210SBarry Smith if (roffset) *roffset = sf->roffset; 97395fce210SBarry Smith if (rmine) *rmine = sf->rmine; 97495fce210SBarry Smith if (rremote) *rremote = sf->rremote; 975dec1416fSJunchao Zhang } 9763ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 97795fce210SBarry Smith } 97895fce210SBarry Smith 9798750ddebSJunchao Zhang /*@C 9808750ddebSJunchao Zhang PetscSFGetLeafRanks - Get leaf ranks referencing roots on this process 9818750ddebSJunchao Zhang 9828750ddebSJunchao Zhang Not Collective 9838750ddebSJunchao Zhang 9844165533cSJose E. Roman Input Parameter: 9858750ddebSJunchao Zhang . sf - star forest 9868750ddebSJunchao Zhang 9874165533cSJose E. Roman Output Parameters: 9888750ddebSJunchao Zhang + niranks - number of leaf ranks referencing roots on this process 98920662ed9SBarry Smith . iranks - [`niranks`] array of ranks 99020662ed9SBarry Smith . ioffset - [`niranks`+1] offset in `irootloc` for each rank 99120662ed9SBarry Smith - irootloc - [`ioffset`[`niranks`]] concatenated array holding local indices of roots referenced by each leaf rank 9928750ddebSJunchao Zhang 9938750ddebSJunchao Zhang Level: developer 9948750ddebSJunchao Zhang 995cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFGetRootRanks()` 9968750ddebSJunchao Zhang @*/ 9976497c311SBarry Smith PetscErrorCode PetscSFGetLeafRanks(PetscSF sf, PetscMPIInt *niranks, const PetscMPIInt **iranks, const PetscInt **ioffset, const PetscInt **irootloc) 998d71ae5a4SJacob Faibussowitsch { 9998750ddebSJunchao Zhang PetscFunctionBegin; 10008750ddebSJunchao Zhang PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 100128b400f6SJacob Faibussowitsch PetscCheck(sf->setupcalled, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Must call PetscSFSetUp() before obtaining ranks"); 10028750ddebSJunchao Zhang if (sf->ops->GetLeafRanks) { 10039927e4dfSBarry Smith PetscUseTypeMethod(sf, GetLeafRanks, niranks, iranks, ioffset, irootloc); 10048750ddebSJunchao Zhang } else { 10058750ddebSJunchao Zhang PetscSFType type; 10069566063dSJacob Faibussowitsch PetscCall(PetscSFGetType(sf, &type)); 100798921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "PetscSFGetLeafRanks() is not supported on this StarForest type: %s", type); 10088750ddebSJunchao Zhang } 10093ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 10108750ddebSJunchao Zhang } 10118750ddebSJunchao Zhang 1012d71ae5a4SJacob Faibussowitsch static PetscBool InList(PetscMPIInt needle, PetscMPIInt n, const PetscMPIInt *list) 1013d71ae5a4SJacob Faibussowitsch { 1014b5a8e515SJed Brown PetscInt i; 1015b5a8e515SJed Brown for (i = 0; i < n; i++) { 1016b5a8e515SJed Brown if (needle == list[i]) return PETSC_TRUE; 1017b5a8e515SJed Brown } 1018b5a8e515SJed Brown return PETSC_FALSE; 1019b5a8e515SJed Brown } 1020b5a8e515SJed Brown 102195fce210SBarry Smith /*@C 1022cab54364SBarry Smith PetscSFSetUpRanks - Set up data structures associated with ranks; this is for internal use by `PetscSF` implementations. 102321c688dcSJed Brown 102421c688dcSJed Brown Collective 102521c688dcSJed Brown 10264165533cSJose E. Roman Input Parameters: 1027cab54364SBarry Smith + sf - `PetscSF` to set up; `PetscSFSetGraph()` must have been called 1028cab54364SBarry Smith - dgroup - `MPI_Group` of ranks to be distinguished (e.g., for self or shared memory exchange) 102921c688dcSJed Brown 103021c688dcSJed Brown Level: developer 103121c688dcSJed Brown 1032cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFGetRootRanks()` 103321c688dcSJed Brown @*/ 1034d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFSetUpRanks(PetscSF sf, MPI_Group dgroup) 1035d71ae5a4SJacob Faibussowitsch { 1036eec179cfSJacob Faibussowitsch PetscHMapI table; 1037eec179cfSJacob Faibussowitsch PetscHashIter pos; 10386497c311SBarry Smith PetscMPIInt size, groupsize, *groupranks, *ranks; 10396497c311SBarry Smith PetscInt *rcount; 10406497c311SBarry Smith PetscInt irank, sfnrank, ranksi; 10416497c311SBarry Smith PetscMPIInt i, orank = -1; 104221c688dcSJed Brown 104321c688dcSJed Brown PetscFunctionBegin; 104421c688dcSJed Brown PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 104529046d53SLisandro Dalcin PetscSFCheckGraphSet(sf, 1); 10469566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)sf), &size)); 1047eec179cfSJacob Faibussowitsch PetscCall(PetscHMapICreateWithSize(10, &table)); 104821c688dcSJed Brown for (i = 0; i < sf->nleaves; i++) { 104921c688dcSJed Brown /* Log 1-based rank */ 1050eec179cfSJacob Faibussowitsch PetscCall(PetscHMapISetWithMode(table, sf->remote[i].rank + 1, 1, ADD_VALUES)); 105121c688dcSJed Brown } 10526497c311SBarry Smith PetscCall(PetscHMapIGetSize(table, &sfnrank)); 10536497c311SBarry Smith PetscCall(PetscMPIIntCast(sfnrank, &sf->nranks)); 10549566063dSJacob Faibussowitsch PetscCall(PetscMalloc4(sf->nranks, &sf->ranks, sf->nranks + 1, &sf->roffset, sf->nleaves, &sf->rmine, sf->nleaves, &sf->rremote)); 10559566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(sf->nranks, &rcount, sf->nranks, &ranks)); 1056eec179cfSJacob Faibussowitsch PetscHashIterBegin(table, pos); 105721c688dcSJed Brown for (i = 0; i < sf->nranks; i++) { 10586497c311SBarry Smith PetscHashIterGetKey(table, pos, ranksi); 10596497c311SBarry Smith PetscCall(PetscMPIIntCast(ranksi, &ranks[i])); 1060eec179cfSJacob Faibussowitsch PetscHashIterGetVal(table, pos, rcount[i]); 1061eec179cfSJacob Faibussowitsch PetscHashIterNext(table, pos); 106221c688dcSJed Brown ranks[i]--; /* Convert back to 0-based */ 106321c688dcSJed Brown } 1064eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&table)); 1065b5a8e515SJed Brown 1066b5a8e515SJed Brown /* We expect that dgroup is reliably "small" while nranks could be large */ 1067b5a8e515SJed Brown { 10687fb8a5e4SKarl Rupp MPI_Group group = MPI_GROUP_NULL; 1069b5a8e515SJed Brown PetscMPIInt *dgroupranks; 10706497c311SBarry Smith 10719566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_group(PetscObjectComm((PetscObject)sf), &group)); 10729566063dSJacob Faibussowitsch PetscCallMPI(MPI_Group_size(dgroup, &groupsize)); 10739566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(groupsize, &dgroupranks)); 10749566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(groupsize, &groupranks)); 1075b5a8e515SJed Brown for (i = 0; i < groupsize; i++) dgroupranks[i] = i; 10769566063dSJacob Faibussowitsch if (groupsize) PetscCallMPI(MPI_Group_translate_ranks(dgroup, groupsize, dgroupranks, group, groupranks)); 10779566063dSJacob Faibussowitsch PetscCallMPI(MPI_Group_free(&group)); 10789566063dSJacob Faibussowitsch PetscCall(PetscFree(dgroupranks)); 1079b5a8e515SJed Brown } 1080b5a8e515SJed Brown 1081b5a8e515SJed Brown /* Partition ranks[] into distinguished (first sf->ndranks) followed by non-distinguished */ 1082b5a8e515SJed Brown for (sf->ndranks = 0, i = sf->nranks; sf->ndranks < i;) { 1083b5a8e515SJed Brown for (i--; sf->ndranks < i; i--) { /* Scan i backward looking for distinguished rank */ 1084b5a8e515SJed Brown if (InList(ranks[i], groupsize, groupranks)) break; 1085b5a8e515SJed Brown } 1086b5a8e515SJed Brown for (; sf->ndranks <= i; sf->ndranks++) { /* Scan sf->ndranks forward looking for non-distinguished rank */ 1087b5a8e515SJed Brown if (!InList(ranks[sf->ndranks], groupsize, groupranks)) break; 1088b5a8e515SJed Brown } 1089b5a8e515SJed Brown if (sf->ndranks < i) { /* Swap ranks[sf->ndranks] with ranks[i] */ 10906497c311SBarry Smith PetscMPIInt tmprank; 10916497c311SBarry Smith PetscInt tmpcount; 1092247e8311SStefano Zampini 1093b5a8e515SJed Brown tmprank = ranks[i]; 1094b5a8e515SJed Brown tmpcount = rcount[i]; 1095b5a8e515SJed Brown ranks[i] = ranks[sf->ndranks]; 1096b5a8e515SJed Brown rcount[i] = rcount[sf->ndranks]; 1097b5a8e515SJed Brown ranks[sf->ndranks] = tmprank; 1098b5a8e515SJed Brown rcount[sf->ndranks] = tmpcount; 1099b5a8e515SJed Brown sf->ndranks++; 1100b5a8e515SJed Brown } 1101b5a8e515SJed Brown } 11029566063dSJacob Faibussowitsch PetscCall(PetscFree(groupranks)); 11036497c311SBarry Smith PetscCall(PetscSortMPIIntWithIntArray(sf->ndranks, ranks, rcount)); 11046497c311SBarry Smith if (rcount) PetscCall(PetscSortMPIIntWithIntArray(sf->nranks - sf->ndranks, ranks + sf->ndranks, rcount + sf->ndranks)); 110521c688dcSJed Brown sf->roffset[0] = 0; 110621c688dcSJed Brown for (i = 0; i < sf->nranks; i++) { 11079566063dSJacob Faibussowitsch PetscCall(PetscMPIIntCast(ranks[i], sf->ranks + i)); 110821c688dcSJed Brown sf->roffset[i + 1] = sf->roffset[i] + rcount[i]; 110921c688dcSJed Brown rcount[i] = 0; 111021c688dcSJed Brown } 1111247e8311SStefano Zampini for (i = 0, irank = -1, orank = -1; i < sf->nleaves; i++) { 1112247e8311SStefano Zampini /* short circuit */ 1113247e8311SStefano Zampini if (orank != sf->remote[i].rank) { 111421c688dcSJed Brown /* Search for index of iremote[i].rank in sf->ranks */ 11156497c311SBarry Smith PetscCall(PetscFindMPIInt((PetscMPIInt)sf->remote[i].rank, sf->ndranks, sf->ranks, &irank)); 1116b5a8e515SJed Brown if (irank < 0) { 11176497c311SBarry Smith PetscCall(PetscFindMPIInt((PetscMPIInt)sf->remote[i].rank, sf->nranks - sf->ndranks, sf->ranks + sf->ndranks, &irank)); 1118b5a8e515SJed Brown if (irank >= 0) irank += sf->ndranks; 111921c688dcSJed Brown } 11206497c311SBarry Smith orank = (PetscMPIInt)sf->remote[i].rank; 1121247e8311SStefano Zampini } 11226497c311SBarry Smith PetscCheck(irank >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Could not find rank %d in array", (PetscMPIInt)sf->remote[i].rank); 112321c688dcSJed Brown sf->rmine[sf->roffset[irank] + rcount[irank]] = sf->mine ? sf->mine[i] : i; 112421c688dcSJed Brown sf->rremote[sf->roffset[irank] + rcount[irank]] = sf->remote[i].index; 112521c688dcSJed Brown rcount[irank]++; 112621c688dcSJed Brown } 11279566063dSJacob Faibussowitsch PetscCall(PetscFree2(rcount, ranks)); 11283ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 112921c688dcSJed Brown } 113021c688dcSJed Brown 113121c688dcSJed Brown /*@C 113295fce210SBarry Smith PetscSFGetGroups - gets incoming and outgoing process groups 113395fce210SBarry Smith 113495fce210SBarry Smith Collective 113595fce210SBarry Smith 11364165533cSJose E. Roman Input Parameter: 113795fce210SBarry Smith . sf - star forest 113895fce210SBarry Smith 11394165533cSJose E. Roman Output Parameters: 114095fce210SBarry Smith + incoming - group of origin processes for incoming edges (leaves that reference my roots) 114195fce210SBarry Smith - outgoing - group of destination processes for outgoing edges (roots that I reference) 114295fce210SBarry Smith 114395fce210SBarry Smith Level: developer 114495fce210SBarry Smith 1145cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFGetWindow()`, `PetscSFRestoreWindow()` 114695fce210SBarry Smith @*/ 1147d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFGetGroups(PetscSF sf, MPI_Group *incoming, MPI_Group *outgoing) 1148d71ae5a4SJacob Faibussowitsch { 11497fb8a5e4SKarl Rupp MPI_Group group = MPI_GROUP_NULL; 115095fce210SBarry Smith 115195fce210SBarry Smith PetscFunctionBegin; 115208401ef6SPierre Jolivet PetscCheck(sf->nranks >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Must call PetscSFSetUpRanks() before obtaining groups"); 115395fce210SBarry Smith if (sf->ingroup == MPI_GROUP_NULL) { 115495fce210SBarry Smith PetscInt i; 115595fce210SBarry Smith const PetscInt *indegree; 11566497c311SBarry Smith PetscMPIInt rank, *outranks, *inranks, indegree0; 115795fce210SBarry Smith PetscSFNode *remote; 115895fce210SBarry Smith PetscSF bgcount; 115995fce210SBarry Smith 116095fce210SBarry Smith /* Compute the number of incoming ranks */ 11619566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(sf->nranks, &remote)); 116295fce210SBarry Smith for (i = 0; i < sf->nranks; i++) { 116395fce210SBarry Smith remote[i].rank = sf->ranks[i]; 116495fce210SBarry Smith remote[i].index = 0; 116595fce210SBarry Smith } 11669566063dSJacob Faibussowitsch PetscCall(PetscSFDuplicate(sf, PETSCSF_DUPLICATE_CONFONLY, &bgcount)); 11679566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(bgcount, 1, sf->nranks, NULL, PETSC_COPY_VALUES, remote, PETSC_OWN_POINTER)); 11689566063dSJacob Faibussowitsch PetscCall(PetscSFComputeDegreeBegin(bgcount, &indegree)); 11699566063dSJacob Faibussowitsch PetscCall(PetscSFComputeDegreeEnd(bgcount, &indegree)); 117095fce210SBarry Smith /* Enumerate the incoming ranks */ 11719566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(indegree[0], &inranks, sf->nranks, &outranks)); 11729566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)sf), &rank)); 117395fce210SBarry Smith for (i = 0; i < sf->nranks; i++) outranks[i] = rank; 11749566063dSJacob Faibussowitsch PetscCall(PetscSFGatherBegin(bgcount, MPI_INT, outranks, inranks)); 11759566063dSJacob Faibussowitsch PetscCall(PetscSFGatherEnd(bgcount, MPI_INT, outranks, inranks)); 11769566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_group(PetscObjectComm((PetscObject)sf), &group)); 11776497c311SBarry Smith PetscCall(PetscMPIIntCast(indegree[0], &indegree0)); 11786497c311SBarry Smith PetscCallMPI(MPI_Group_incl(group, indegree0, inranks, &sf->ingroup)); 11799566063dSJacob Faibussowitsch PetscCallMPI(MPI_Group_free(&group)); 11809566063dSJacob Faibussowitsch PetscCall(PetscFree2(inranks, outranks)); 11819566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&bgcount)); 118295fce210SBarry Smith } 118395fce210SBarry Smith *incoming = sf->ingroup; 118495fce210SBarry Smith 118595fce210SBarry Smith if (sf->outgroup == MPI_GROUP_NULL) { 11869566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_group(PetscObjectComm((PetscObject)sf), &group)); 11879566063dSJacob Faibussowitsch PetscCallMPI(MPI_Group_incl(group, sf->nranks, sf->ranks, &sf->outgroup)); 11889566063dSJacob Faibussowitsch PetscCallMPI(MPI_Group_free(&group)); 118995fce210SBarry Smith } 119095fce210SBarry Smith *outgoing = sf->outgroup; 11913ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 119295fce210SBarry Smith } 119395fce210SBarry Smith 119429046d53SLisandro Dalcin /*@ 11950dd791a8SStefano Zampini PetscSFGetRanksSF - gets the `PetscSF` to perform communications with root ranks 11960dd791a8SStefano Zampini 11970dd791a8SStefano Zampini Collective 11980dd791a8SStefano Zampini 11990dd791a8SStefano Zampini Input Parameter: 12000dd791a8SStefano Zampini . sf - star forest 12010dd791a8SStefano Zampini 12020dd791a8SStefano Zampini Output Parameter: 12030dd791a8SStefano Zampini . rsf - the star forest with a single root per process to perform communications 12040dd791a8SStefano Zampini 12050dd791a8SStefano Zampini Level: developer 12060dd791a8SStefano Zampini 12070dd791a8SStefano Zampini .seealso: `PetscSF`, `PetscSFSetGraph()`, `PetscSFGetRootRanks()` 12080dd791a8SStefano Zampini @*/ 12090dd791a8SStefano Zampini PetscErrorCode PetscSFGetRanksSF(PetscSF sf, PetscSF *rsf) 12100dd791a8SStefano Zampini { 12110dd791a8SStefano Zampini PetscFunctionBegin; 12120dd791a8SStefano Zampini PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 12130dd791a8SStefano Zampini PetscAssertPointer(rsf, 2); 12140dd791a8SStefano Zampini if (!sf->rankssf) { 12150dd791a8SStefano Zampini PetscSFNode *rremotes; 12160dd791a8SStefano Zampini const PetscMPIInt *ranks; 12176497c311SBarry Smith PetscMPIInt nranks; 12180dd791a8SStefano Zampini 12190dd791a8SStefano Zampini PetscCall(PetscSFGetRootRanks(sf, &nranks, &ranks, NULL, NULL, NULL)); 12200dd791a8SStefano Zampini PetscCall(PetscMalloc1(nranks, &rremotes)); 12210dd791a8SStefano Zampini for (PetscInt i = 0; i < nranks; i++) { 12220dd791a8SStefano Zampini rremotes[i].rank = ranks[i]; 12230dd791a8SStefano Zampini rremotes[i].index = 0; 12240dd791a8SStefano Zampini } 12250dd791a8SStefano Zampini PetscCall(PetscSFDuplicate(sf, PETSCSF_DUPLICATE_CONFONLY, &sf->rankssf)); 12260dd791a8SStefano Zampini PetscCall(PetscSFSetGraph(sf->rankssf, 1, nranks, NULL, PETSC_OWN_POINTER, rremotes, PETSC_OWN_POINTER)); 12270dd791a8SStefano Zampini } 12280dd791a8SStefano Zampini *rsf = sf->rankssf; 12290dd791a8SStefano Zampini PetscFunctionReturn(PETSC_SUCCESS); 12300dd791a8SStefano Zampini } 12310dd791a8SStefano Zampini 12320dd791a8SStefano Zampini /*@ 1233cab54364SBarry Smith PetscSFGetMultiSF - gets the inner `PetscSF` implementing gathers and scatters 123495fce210SBarry Smith 123595fce210SBarry Smith Collective 123695fce210SBarry Smith 12374165533cSJose E. Roman Input Parameter: 123895fce210SBarry Smith . sf - star forest that may contain roots with 0 or with more than 1 vertex 123995fce210SBarry Smith 12404165533cSJose E. Roman Output Parameter: 124195fce210SBarry Smith . multi - star forest with split roots, such that each root has degree exactly 1 124295fce210SBarry Smith 124395fce210SBarry Smith Level: developer 124495fce210SBarry Smith 1245cab54364SBarry Smith Note: 1246cab54364SBarry Smith In most cases, users should use `PetscSFGatherBegin()` and `PetscSFScatterBegin()` instead of manipulating multi 124795fce210SBarry Smith directly. Since multi satisfies the stronger condition that each entry in the global space has exactly one incoming 124895fce210SBarry Smith edge, it is a candidate for future optimization that might involve its removal. 124995fce210SBarry Smith 1250cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFSetGraph()`, `PetscSFGatherBegin()`, `PetscSFScatterBegin()`, `PetscSFComputeMultiRootOriginalNumbering()` 125195fce210SBarry Smith @*/ 1252d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFGetMultiSF(PetscSF sf, PetscSF *multi) 1253d71ae5a4SJacob Faibussowitsch { 125495fce210SBarry Smith PetscFunctionBegin; 125595fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 12564f572ea9SToby Isaac PetscAssertPointer(multi, 2); 125795fce210SBarry Smith if (sf->nroots < 0) { /* Graph has not been set yet; why do we need this? */ 12589566063dSJacob Faibussowitsch PetscCall(PetscSFDuplicate(sf, PETSCSF_DUPLICATE_RANKS, &sf->multi)); 125995fce210SBarry Smith *multi = sf->multi; 1260013b3241SStefano Zampini sf->multi->multi = sf->multi; 12613ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 126295fce210SBarry Smith } 126395fce210SBarry Smith if (!sf->multi) { 126495fce210SBarry Smith const PetscInt *indegree; 12659837ea96SMatthew G. Knepley PetscInt i, *inoffset, *outones, *outoffset, maxlocal; 126695fce210SBarry Smith PetscSFNode *remote; 126729046d53SLisandro Dalcin maxlocal = sf->maxleaf + 1; /* TODO: We should use PetscSFGetLeafRange() */ 12689566063dSJacob Faibussowitsch PetscCall(PetscSFComputeDegreeBegin(sf, &indegree)); 12699566063dSJacob Faibussowitsch PetscCall(PetscSFComputeDegreeEnd(sf, &indegree)); 12709566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(sf->nroots + 1, &inoffset, maxlocal, &outones, maxlocal, &outoffset)); 127195fce210SBarry Smith inoffset[0] = 0; 127295fce210SBarry Smith for (i = 0; i < sf->nroots; i++) inoffset[i + 1] = inoffset[i] + indegree[i]; 12739837ea96SMatthew G. Knepley for (i = 0; i < maxlocal; i++) outones[i] = 1; 12749566063dSJacob Faibussowitsch PetscCall(PetscSFFetchAndOpBegin(sf, MPIU_INT, inoffset, outones, outoffset, MPI_SUM)); 12759566063dSJacob Faibussowitsch PetscCall(PetscSFFetchAndOpEnd(sf, MPIU_INT, inoffset, outones, outoffset, MPI_SUM)); 127695fce210SBarry Smith for (i = 0; i < sf->nroots; i++) inoffset[i] -= indegree[i]; /* Undo the increment */ 127776bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { /* Check that the expected number of increments occurred */ 1278ad540459SPierre Jolivet for (i = 0; i < sf->nroots; i++) PetscCheck(inoffset[i] + indegree[i] == inoffset[i + 1], PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect result after PetscSFFetchAndOp"); 127976bd3646SJed Brown } 12809566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(sf->nleaves, &remote)); 128195fce210SBarry Smith for (i = 0; i < sf->nleaves; i++) { 128295fce210SBarry Smith remote[i].rank = sf->remote[i].rank; 128338e7336fSToby Isaac remote[i].index = outoffset[sf->mine ? sf->mine[i] : i]; 128495fce210SBarry Smith } 12859566063dSJacob Faibussowitsch PetscCall(PetscSFDuplicate(sf, PETSCSF_DUPLICATE_RANKS, &sf->multi)); 1286013b3241SStefano Zampini sf->multi->multi = sf->multi; 12879566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf->multi, inoffset[sf->nroots], sf->nleaves, sf->mine, PETSC_COPY_VALUES, remote, PETSC_OWN_POINTER)); 128895fce210SBarry Smith if (sf->rankorder) { /* Sort the ranks */ 128995fce210SBarry Smith PetscMPIInt rank; 129095fce210SBarry Smith PetscInt *inranks, *newoffset, *outranks, *newoutoffset, *tmpoffset, maxdegree; 129195fce210SBarry Smith PetscSFNode *newremote; 12929566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)sf), &rank)); 129395fce210SBarry Smith for (i = 0, maxdegree = 0; i < sf->nroots; i++) maxdegree = PetscMax(maxdegree, indegree[i]); 12949566063dSJacob Faibussowitsch PetscCall(PetscMalloc5(sf->multi->nroots, &inranks, sf->multi->nroots, &newoffset, maxlocal, &outranks, maxlocal, &newoutoffset, maxdegree, &tmpoffset)); 12959837ea96SMatthew G. Knepley for (i = 0; i < maxlocal; i++) outranks[i] = rank; 12969566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sf->multi, MPIU_INT, outranks, inranks, MPI_REPLACE)); 12979566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf->multi, MPIU_INT, outranks, inranks, MPI_REPLACE)); 129895fce210SBarry Smith /* Sort the incoming ranks at each vertex, build the inverse map */ 129995fce210SBarry Smith for (i = 0; i < sf->nroots; i++) { 130095fce210SBarry Smith PetscInt j; 130195fce210SBarry Smith for (j = 0; j < indegree[i]; j++) tmpoffset[j] = j; 13028e3a54c0SPierre Jolivet PetscCall(PetscSortIntWithArray(indegree[i], PetscSafePointerPlusOffset(inranks, inoffset[i]), tmpoffset)); 130395fce210SBarry Smith for (j = 0; j < indegree[i]; j++) newoffset[inoffset[i] + tmpoffset[j]] = inoffset[i] + j; 130495fce210SBarry Smith } 13059566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf->multi, MPIU_INT, newoffset, newoutoffset, MPI_REPLACE)); 13069566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf->multi, MPIU_INT, newoffset, newoutoffset, MPI_REPLACE)); 13079566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(sf->nleaves, &newremote)); 130895fce210SBarry Smith for (i = 0; i < sf->nleaves; i++) { 130995fce210SBarry Smith newremote[i].rank = sf->remote[i].rank; 131001365b40SToby Isaac newremote[i].index = newoutoffset[sf->mine ? sf->mine[i] : i]; 131195fce210SBarry Smith } 13129566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf->multi, inoffset[sf->nroots], sf->nleaves, sf->mine, PETSC_COPY_VALUES, newremote, PETSC_OWN_POINTER)); 13139566063dSJacob Faibussowitsch PetscCall(PetscFree5(inranks, newoffset, outranks, newoutoffset, tmpoffset)); 131495fce210SBarry Smith } 13159566063dSJacob Faibussowitsch PetscCall(PetscFree3(inoffset, outones, outoffset)); 131695fce210SBarry Smith } 131795fce210SBarry Smith *multi = sf->multi; 13183ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 131995fce210SBarry Smith } 132095fce210SBarry Smith 132195fce210SBarry Smith /*@C 132220662ed9SBarry Smith PetscSFCreateEmbeddedRootSF - removes edges from all but the selected roots of a `PetscSF`, does not remap indices 132395fce210SBarry Smith 132495fce210SBarry Smith Collective 132595fce210SBarry Smith 13264165533cSJose E. Roman Input Parameters: 132795fce210SBarry Smith + sf - original star forest 1328ba2a7774SJunchao Zhang . nselected - number of selected roots on this process 1329ba2a7774SJunchao Zhang - selected - indices of the selected roots on this process 133095fce210SBarry Smith 13314165533cSJose E. Roman Output Parameter: 1332cd620004SJunchao Zhang . esf - new star forest 133395fce210SBarry Smith 133495fce210SBarry Smith Level: advanced 133595fce210SBarry Smith 133695fce210SBarry Smith Note: 1337cab54364SBarry Smith To use the new `PetscSF`, it may be necessary to know the indices of the leaves that are still participating. This can 133895fce210SBarry Smith be done by calling PetscSFGetGraph(). 133995fce210SBarry Smith 1340cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFSetGraph()`, `PetscSFGetGraph()` 134195fce210SBarry Smith @*/ 1342d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFCreateEmbeddedRootSF(PetscSF sf, PetscInt nselected, const PetscInt *selected, PetscSF *esf) 1343d71ae5a4SJacob Faibussowitsch { 1344cd620004SJunchao Zhang PetscInt i, j, n, nroots, nleaves, esf_nleaves, *new_ilocal, minleaf, maxleaf, maxlocal; 1345cd620004SJunchao Zhang const PetscInt *ilocal; 1346cd620004SJunchao Zhang signed char *rootdata, *leafdata, *leafmem; 1347ba2a7774SJunchao Zhang const PetscSFNode *iremote; 1348f659e5c7SJunchao Zhang PetscSFNode *new_iremote; 1349f659e5c7SJunchao Zhang MPI_Comm comm; 135095fce210SBarry Smith 135195fce210SBarry Smith PetscFunctionBegin; 135295fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 135329046d53SLisandro Dalcin PetscSFCheckGraphSet(sf, 1); 13544f572ea9SToby Isaac if (nselected) PetscAssertPointer(selected, 3); 13554f572ea9SToby Isaac PetscAssertPointer(esf, 4); 13560511a646SMatthew G. Knepley 13579566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 13589566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(PETSCSF_EmbedSF, sf, 0, 0, 0)); 13599566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)sf, &comm)); 13609566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sf, &nroots, &nleaves, &ilocal, &iremote)); 1361cd620004SJunchao Zhang 136276bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { /* Error out if selected[] has dups or out of range indices */ 1363cd620004SJunchao Zhang PetscBool dups; 13649566063dSJacob Faibussowitsch PetscCall(PetscCheckDupsInt(nselected, selected, &dups)); 136528b400f6SJacob Faibussowitsch PetscCheck(!dups, comm, PETSC_ERR_ARG_WRONG, "selected[] has dups"); 1366511e6246SStefano Zampini for (i = 0; i < nselected; i++) PetscCheck(selected[i] >= 0 && selected[i] < nroots, comm, PETSC_ERR_ARG_OUTOFRANGE, "selected root index %" PetscInt_FMT " is out of [0,%" PetscInt_FMT ")", selected[i], nroots); 1367cd620004SJunchao Zhang } 1368f659e5c7SJunchao Zhang 1369dbbe0bcdSBarry Smith if (sf->ops->CreateEmbeddedRootSF) PetscUseTypeMethod(sf, CreateEmbeddedRootSF, nselected, selected, esf); 1370dbbe0bcdSBarry Smith else { 1371cd620004SJunchao Zhang /* A generic version of creating embedded sf */ 13729566063dSJacob Faibussowitsch PetscCall(PetscSFGetLeafRange(sf, &minleaf, &maxleaf)); 1373cd620004SJunchao Zhang maxlocal = maxleaf - minleaf + 1; 13749566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(nroots, &rootdata, maxlocal, &leafmem)); 13758e3a54c0SPierre Jolivet leafdata = PetscSafePointerPlusOffset(leafmem, -minleaf); 1376cd620004SJunchao Zhang /* Tag selected roots and bcast to leaves */ 1377cd620004SJunchao Zhang for (i = 0; i < nselected; i++) rootdata[selected[i]] = 1; 13789566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPI_SIGNED_CHAR, rootdata, leafdata, MPI_REPLACE)); 13799566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPI_SIGNED_CHAR, rootdata, leafdata, MPI_REPLACE)); 1380ba2a7774SJunchao Zhang 1381cd620004SJunchao Zhang /* Build esf with leaves that are still connected */ 1382cd620004SJunchao Zhang esf_nleaves = 0; 1383cd620004SJunchao Zhang for (i = 0; i < nleaves; i++) { 1384cd620004SJunchao Zhang j = ilocal ? ilocal[i] : i; 1385cd620004SJunchao Zhang /* esf_nleaves += leafdata[j] should work in theory, but failed with SFWindow bugs 1386cd620004SJunchao Zhang with PetscSFBcast. See https://gitlab.com/petsc/petsc/issues/555 1387cd620004SJunchao Zhang */ 1388cd620004SJunchao Zhang esf_nleaves += (leafdata[j] ? 1 : 0); 1389cd620004SJunchao Zhang } 13909566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(esf_nleaves, &new_ilocal)); 13919566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(esf_nleaves, &new_iremote)); 1392cd620004SJunchao Zhang for (i = n = 0; i < nleaves; i++) { 1393cd620004SJunchao Zhang j = ilocal ? ilocal[i] : i; 1394cd620004SJunchao Zhang if (leafdata[j]) { 1395cd620004SJunchao Zhang new_ilocal[n] = j; 1396cd620004SJunchao Zhang new_iremote[n].rank = iremote[i].rank; 1397cd620004SJunchao Zhang new_iremote[n].index = iremote[i].index; 1398fc1ede2bSMatthew G. Knepley ++n; 139995fce210SBarry Smith } 140095fce210SBarry Smith } 14019566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, esf)); 14029566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(*esf)); 14039566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(*esf, nroots, esf_nleaves, new_ilocal, PETSC_OWN_POINTER, new_iremote, PETSC_OWN_POINTER)); 14049566063dSJacob Faibussowitsch PetscCall(PetscFree2(rootdata, leafmem)); 1405f659e5c7SJunchao Zhang } 14069566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(PETSCSF_EmbedSF, sf, 0, 0, 0)); 14073ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 140895fce210SBarry Smith } 140995fce210SBarry Smith 14102f5fb4c2SMatthew G. Knepley /*@C 141120662ed9SBarry Smith PetscSFCreateEmbeddedLeafSF - removes edges from all but the selected leaves of a `PetscSF`, does not remap indices 14122f5fb4c2SMatthew G. Knepley 14132f5fb4c2SMatthew G. Knepley Collective 14142f5fb4c2SMatthew G. Knepley 14154165533cSJose E. Roman Input Parameters: 14162f5fb4c2SMatthew G. Knepley + sf - original star forest 1417f659e5c7SJunchao Zhang . nselected - number of selected leaves on this process 1418f659e5c7SJunchao Zhang - selected - indices of the selected leaves on this process 14192f5fb4c2SMatthew G. Knepley 14204165533cSJose E. Roman Output Parameter: 14212f5fb4c2SMatthew G. Knepley . newsf - new star forest 14222f5fb4c2SMatthew G. Knepley 14232f5fb4c2SMatthew G. Knepley Level: advanced 14242f5fb4c2SMatthew G. Knepley 1425cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFCreateEmbeddedRootSF()`, `PetscSFSetGraph()`, `PetscSFGetGraph()` 14262f5fb4c2SMatthew G. Knepley @*/ 1427d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFCreateEmbeddedLeafSF(PetscSF sf, PetscInt nselected, const PetscInt *selected, PetscSF *newsf) 1428d71ae5a4SJacob Faibussowitsch { 1429f659e5c7SJunchao Zhang const PetscSFNode *iremote; 1430f659e5c7SJunchao Zhang PetscSFNode *new_iremote; 1431f659e5c7SJunchao Zhang const PetscInt *ilocal; 1432f659e5c7SJunchao Zhang PetscInt i, nroots, *leaves, *new_ilocal; 1433f659e5c7SJunchao Zhang MPI_Comm comm; 14342f5fb4c2SMatthew G. Knepley 14352f5fb4c2SMatthew G. Knepley PetscFunctionBegin; 14362f5fb4c2SMatthew G. Knepley PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 143729046d53SLisandro Dalcin PetscSFCheckGraphSet(sf, 1); 14384f572ea9SToby Isaac if (nselected) PetscAssertPointer(selected, 3); 14394f572ea9SToby Isaac PetscAssertPointer(newsf, 4); 14402f5fb4c2SMatthew G. Knepley 1441f659e5c7SJunchao Zhang /* Uniq selected[] and put results in leaves[] */ 14429566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)sf, &comm)); 14439566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nselected, &leaves)); 14449566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(leaves, selected, nselected)); 14459566063dSJacob Faibussowitsch PetscCall(PetscSortedRemoveDupsInt(&nselected, leaves)); 144608401ef6SPierre Jolivet PetscCheck(!nselected || !(leaves[0] < 0 || leaves[nselected - 1] >= sf->nleaves), comm, PETSC_ERR_ARG_OUTOFRANGE, "Min/Max leaf indices %" PetscInt_FMT "/%" PetscInt_FMT " are not in [0,%" PetscInt_FMT ")", leaves[0], leaves[nselected - 1], sf->nleaves); 1447f659e5c7SJunchao Zhang 1448f659e5c7SJunchao Zhang /* Optimize the routine only when sf is setup and hence we can reuse sf's communication pattern */ 1449dbbe0bcdSBarry Smith if (sf->setupcalled && sf->ops->CreateEmbeddedLeafSF) PetscUseTypeMethod(sf, CreateEmbeddedLeafSF, nselected, leaves, newsf); 1450dbbe0bcdSBarry Smith else { 14519566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sf, &nroots, NULL, &ilocal, &iremote)); 14529566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nselected, &new_ilocal)); 14539566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nselected, &new_iremote)); 1454f659e5c7SJunchao Zhang for (i = 0; i < nselected; ++i) { 1455f659e5c7SJunchao Zhang const PetscInt l = leaves[i]; 1456f659e5c7SJunchao Zhang new_ilocal[i] = ilocal ? ilocal[l] : l; 1457f659e5c7SJunchao Zhang new_iremote[i].rank = iremote[l].rank; 1458f659e5c7SJunchao Zhang new_iremote[i].index = iremote[l].index; 14592f5fb4c2SMatthew G. Knepley } 14609566063dSJacob Faibussowitsch PetscCall(PetscSFDuplicate(sf, PETSCSF_DUPLICATE_CONFONLY, newsf)); 14619566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(*newsf, nroots, nselected, new_ilocal, PETSC_OWN_POINTER, new_iremote, PETSC_OWN_POINTER)); 1462f659e5c7SJunchao Zhang } 14639566063dSJacob Faibussowitsch PetscCall(PetscFree(leaves)); 14643ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14652f5fb4c2SMatthew G. Knepley } 14662f5fb4c2SMatthew G. Knepley 146795fce210SBarry Smith /*@C 1468cab54364SBarry Smith PetscSFBcastBegin - begin pointwise broadcast with root value being reduced to leaf value, to be concluded with call to `PetscSFBcastEnd()` 14693482bfa8SJunchao Zhang 1470c3339decSBarry Smith Collective 14713482bfa8SJunchao Zhang 14724165533cSJose E. Roman Input Parameters: 14733482bfa8SJunchao Zhang + sf - star forest on which to communicate 14743482bfa8SJunchao Zhang . unit - data type associated with each node 14753482bfa8SJunchao Zhang . rootdata - buffer to broadcast 14763482bfa8SJunchao Zhang - op - operation to use for reduction 14773482bfa8SJunchao Zhang 14784165533cSJose E. Roman Output Parameter: 14793482bfa8SJunchao Zhang . leafdata - buffer to be reduced with values from each leaf's respective root 14803482bfa8SJunchao Zhang 14813482bfa8SJunchao Zhang Level: intermediate 14823482bfa8SJunchao Zhang 148320662ed9SBarry Smith Note: 148420662ed9SBarry Smith When PETSc is configured with device support, it will use its own mechanism to figure out whether the given data pointers 1485da81f932SPierre Jolivet are host pointers or device pointers, which may incur a noticeable cost. If you already knew the info, you should 1486cab54364SBarry Smith use `PetscSFBcastWithMemTypeBegin()` instead. 1487cab54364SBarry Smith 1488cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFBcastEnd()`, `PetscSFBcastWithMemTypeBegin()` 14893482bfa8SJunchao Zhang @*/ 1490d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFBcastBegin(PetscSF sf, MPI_Datatype unit, const void *rootdata, void *leafdata, MPI_Op op) 1491d71ae5a4SJacob Faibussowitsch { 1492eb02082bSJunchao Zhang PetscMemType rootmtype, leafmtype; 14933482bfa8SJunchao Zhang 14943482bfa8SJunchao Zhang PetscFunctionBegin; 14953482bfa8SJunchao Zhang PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 14969566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 14979566063dSJacob Faibussowitsch if (!sf->vscat.logging) PetscCall(PetscLogEventBegin(PETSCSF_BcastBegin, sf, 0, 0, 0)); 14989566063dSJacob Faibussowitsch PetscCall(PetscGetMemType(rootdata, &rootmtype)); 14999566063dSJacob Faibussowitsch PetscCall(PetscGetMemType(leafdata, &leafmtype)); 1500dbbe0bcdSBarry Smith PetscUseTypeMethod(sf, BcastBegin, unit, rootmtype, rootdata, leafmtype, leafdata, op); 15019566063dSJacob Faibussowitsch if (!sf->vscat.logging) PetscCall(PetscLogEventEnd(PETSCSF_BcastBegin, sf, 0, 0, 0)); 15023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 15033482bfa8SJunchao Zhang } 15043482bfa8SJunchao Zhang 15053482bfa8SJunchao Zhang /*@C 150620662ed9SBarry Smith PetscSFBcastWithMemTypeBegin - begin pointwise broadcast with root value being reduced to leaf value with explicit memory types, to be concluded with call 150720662ed9SBarry Smith to `PetscSFBcastEnd()` 1508d0295fc0SJunchao Zhang 1509c3339decSBarry Smith Collective 1510d0295fc0SJunchao Zhang 15114165533cSJose E. Roman Input Parameters: 1512d0295fc0SJunchao Zhang + sf - star forest on which to communicate 1513d0295fc0SJunchao Zhang . unit - data type associated with each node 1514d0295fc0SJunchao Zhang . rootmtype - memory type of rootdata 1515d0295fc0SJunchao Zhang . rootdata - buffer to broadcast 1516d0295fc0SJunchao Zhang . leafmtype - memory type of leafdata 1517d0295fc0SJunchao Zhang - op - operation to use for reduction 1518d0295fc0SJunchao Zhang 15194165533cSJose E. Roman Output Parameter: 1520d0295fc0SJunchao Zhang . leafdata - buffer to be reduced with values from each leaf's respective root 1521d0295fc0SJunchao Zhang 1522d0295fc0SJunchao Zhang Level: intermediate 1523d0295fc0SJunchao Zhang 1524cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFBcastEnd()`, `PetscSFBcastBegin()` 1525d0295fc0SJunchao Zhang @*/ 1526d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFBcastWithMemTypeBegin(PetscSF sf, MPI_Datatype unit, PetscMemType rootmtype, const void *rootdata, PetscMemType leafmtype, void *leafdata, MPI_Op op) 1527d71ae5a4SJacob Faibussowitsch { 1528d0295fc0SJunchao Zhang PetscFunctionBegin; 1529d0295fc0SJunchao Zhang PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 15309566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 15319566063dSJacob Faibussowitsch if (!sf->vscat.logging) PetscCall(PetscLogEventBegin(PETSCSF_BcastBegin, sf, 0, 0, 0)); 1532dbbe0bcdSBarry Smith PetscUseTypeMethod(sf, BcastBegin, unit, rootmtype, rootdata, leafmtype, leafdata, op); 15339566063dSJacob Faibussowitsch if (!sf->vscat.logging) PetscCall(PetscLogEventEnd(PETSCSF_BcastBegin, sf, 0, 0, 0)); 15343ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1535d0295fc0SJunchao Zhang } 1536d0295fc0SJunchao Zhang 1537d0295fc0SJunchao Zhang /*@C 153820662ed9SBarry Smith PetscSFBcastEnd - end a broadcast and reduce operation started with `PetscSFBcastBegin()` or `PetscSFBcastWithMemTypeBegin()` 15393482bfa8SJunchao Zhang 15403482bfa8SJunchao Zhang Collective 15413482bfa8SJunchao Zhang 15424165533cSJose E. Roman Input Parameters: 15433482bfa8SJunchao Zhang + sf - star forest 15443482bfa8SJunchao Zhang . unit - data type 15453482bfa8SJunchao Zhang . rootdata - buffer to broadcast 15463482bfa8SJunchao Zhang - op - operation to use for reduction 15473482bfa8SJunchao Zhang 15484165533cSJose E. Roman Output Parameter: 15493482bfa8SJunchao Zhang . leafdata - buffer to be reduced with values from each leaf's respective root 15503482bfa8SJunchao Zhang 15513482bfa8SJunchao Zhang Level: intermediate 15523482bfa8SJunchao Zhang 1553cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFSetGraph()`, `PetscSFReduceEnd()` 15543482bfa8SJunchao Zhang @*/ 1555d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFBcastEnd(PetscSF sf, MPI_Datatype unit, const void *rootdata, void *leafdata, MPI_Op op) 1556d71ae5a4SJacob Faibussowitsch { 15573482bfa8SJunchao Zhang PetscFunctionBegin; 15583482bfa8SJunchao Zhang PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 15599566063dSJacob Faibussowitsch if (!sf->vscat.logging) PetscCall(PetscLogEventBegin(PETSCSF_BcastEnd, sf, 0, 0, 0)); 1560dbbe0bcdSBarry Smith PetscUseTypeMethod(sf, BcastEnd, unit, rootdata, leafdata, op); 15619566063dSJacob Faibussowitsch if (!sf->vscat.logging) PetscCall(PetscLogEventEnd(PETSCSF_BcastEnd, sf, 0, 0, 0)); 15623ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 15633482bfa8SJunchao Zhang } 15643482bfa8SJunchao Zhang 15653482bfa8SJunchao Zhang /*@C 1566cab54364SBarry Smith PetscSFReduceBegin - begin reduction of leafdata into rootdata, to be completed with call to `PetscSFReduceEnd()` 156795fce210SBarry Smith 156895fce210SBarry Smith Collective 156995fce210SBarry Smith 15704165533cSJose E. Roman Input Parameters: 157195fce210SBarry Smith + sf - star forest 157295fce210SBarry Smith . unit - data type 157395fce210SBarry Smith . leafdata - values to reduce 157495fce210SBarry Smith - op - reduction operation 157595fce210SBarry Smith 15764165533cSJose E. Roman Output Parameter: 157795fce210SBarry Smith . rootdata - result of reduction of values from all leaves of each root 157895fce210SBarry Smith 157995fce210SBarry Smith Level: intermediate 158095fce210SBarry Smith 158120662ed9SBarry Smith Note: 158220662ed9SBarry Smith When PETSc is configured with device support, it will use its own mechanism to figure out whether the given data pointers 1583da81f932SPierre Jolivet are host pointers or device pointers, which may incur a noticeable cost. If you already knew the info, you should 1584cab54364SBarry Smith use `PetscSFReduceWithMemTypeBegin()` instead. 1585d0295fc0SJunchao Zhang 158620662ed9SBarry Smith .seealso: `PetscSF`, `PetscSFBcastBegin()`, `PetscSFReduceWithMemTypeBegin()`, `PetscSFReduceEnd()` 158795fce210SBarry Smith @*/ 1588d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFReduceBegin(PetscSF sf, MPI_Datatype unit, const void *leafdata, void *rootdata, MPI_Op op) 1589d71ae5a4SJacob Faibussowitsch { 1590eb02082bSJunchao Zhang PetscMemType rootmtype, leafmtype; 159195fce210SBarry Smith 159295fce210SBarry Smith PetscFunctionBegin; 159395fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 15949566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 15959566063dSJacob Faibussowitsch if (!sf->vscat.logging) PetscCall(PetscLogEventBegin(PETSCSF_ReduceBegin, sf, 0, 0, 0)); 15969566063dSJacob Faibussowitsch PetscCall(PetscGetMemType(rootdata, &rootmtype)); 15979566063dSJacob Faibussowitsch PetscCall(PetscGetMemType(leafdata, &leafmtype)); 1598f4f49eeaSPierre Jolivet PetscCall(sf->ops->ReduceBegin(sf, unit, leafmtype, leafdata, rootmtype, rootdata, op)); 15999566063dSJacob Faibussowitsch if (!sf->vscat.logging) PetscCall(PetscLogEventEnd(PETSCSF_ReduceBegin, sf, 0, 0, 0)); 16003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 160195fce210SBarry Smith } 160295fce210SBarry Smith 160395fce210SBarry Smith /*@C 1604cab54364SBarry Smith PetscSFReduceWithMemTypeBegin - begin reduction of leafdata into rootdata with explicit memory types, to be completed with call to `PetscSFReduceEnd()` 1605d0295fc0SJunchao Zhang 1606d0295fc0SJunchao Zhang Collective 1607d0295fc0SJunchao Zhang 16084165533cSJose E. Roman Input Parameters: 1609d0295fc0SJunchao Zhang + sf - star forest 1610d0295fc0SJunchao Zhang . unit - data type 1611d0295fc0SJunchao Zhang . leafmtype - memory type of leafdata 1612d0295fc0SJunchao Zhang . leafdata - values to reduce 1613d0295fc0SJunchao Zhang . rootmtype - memory type of rootdata 1614d0295fc0SJunchao Zhang - op - reduction operation 1615d0295fc0SJunchao Zhang 16164165533cSJose E. Roman Output Parameter: 1617d0295fc0SJunchao Zhang . rootdata - result of reduction of values from all leaves of each root 1618d0295fc0SJunchao Zhang 1619d0295fc0SJunchao Zhang Level: intermediate 1620d0295fc0SJunchao Zhang 162120662ed9SBarry Smith .seealso: `PetscSF`, `PetscSFBcastBegin()`, `PetscSFReduceBegin()`, `PetscSFReduceEnd()` 1622d0295fc0SJunchao Zhang @*/ 1623d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFReduceWithMemTypeBegin(PetscSF sf, MPI_Datatype unit, PetscMemType leafmtype, const void *leafdata, PetscMemType rootmtype, void *rootdata, MPI_Op op) 1624d71ae5a4SJacob Faibussowitsch { 1625d0295fc0SJunchao Zhang PetscFunctionBegin; 1626d0295fc0SJunchao Zhang PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 16279566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 16289566063dSJacob Faibussowitsch if (!sf->vscat.logging) PetscCall(PetscLogEventBegin(PETSCSF_ReduceBegin, sf, 0, 0, 0)); 1629f4f49eeaSPierre Jolivet PetscCall(sf->ops->ReduceBegin(sf, unit, leafmtype, leafdata, rootmtype, rootdata, op)); 16309566063dSJacob Faibussowitsch if (!sf->vscat.logging) PetscCall(PetscLogEventEnd(PETSCSF_ReduceBegin, sf, 0, 0, 0)); 16313ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1632d0295fc0SJunchao Zhang } 1633d0295fc0SJunchao Zhang 1634d0295fc0SJunchao Zhang /*@C 163520662ed9SBarry Smith PetscSFReduceEnd - end a reduction operation started with `PetscSFReduceBegin()` or `PetscSFReduceWithMemTypeBegin()` 163695fce210SBarry Smith 163795fce210SBarry Smith Collective 163895fce210SBarry Smith 16394165533cSJose E. Roman Input Parameters: 164095fce210SBarry Smith + sf - star forest 164195fce210SBarry Smith . unit - data type 164295fce210SBarry Smith . leafdata - values to reduce 164395fce210SBarry Smith - op - reduction operation 164495fce210SBarry Smith 16454165533cSJose E. Roman Output Parameter: 164695fce210SBarry Smith . rootdata - result of reduction of values from all leaves of each root 164795fce210SBarry Smith 164895fce210SBarry Smith Level: intermediate 164995fce210SBarry Smith 165020662ed9SBarry Smith .seealso: `PetscSF`, `PetscSFSetGraph()`, `PetscSFBcastEnd()`, `PetscSFReduceBegin()`, `PetscSFReduceWithMemTypeBegin()` 165195fce210SBarry Smith @*/ 1652d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFReduceEnd(PetscSF sf, MPI_Datatype unit, const void *leafdata, void *rootdata, MPI_Op op) 1653d71ae5a4SJacob Faibussowitsch { 165495fce210SBarry Smith PetscFunctionBegin; 165595fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 16569566063dSJacob Faibussowitsch if (!sf->vscat.logging) PetscCall(PetscLogEventBegin(PETSCSF_ReduceEnd, sf, 0, 0, 0)); 1657dbbe0bcdSBarry Smith PetscUseTypeMethod(sf, ReduceEnd, unit, leafdata, rootdata, op); 16589566063dSJacob Faibussowitsch if (!sf->vscat.logging) PetscCall(PetscLogEventEnd(PETSCSF_ReduceEnd, sf, 0, 0, 0)); 16593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 166095fce210SBarry Smith } 166195fce210SBarry Smith 166295fce210SBarry Smith /*@C 1663cab54364SBarry Smith PetscSFFetchAndOpBegin - begin operation that fetches values from root and updates atomically by applying operation using my leaf value, 1664cab54364SBarry Smith to be completed with `PetscSFFetchAndOpEnd()` 1665a1729e3fSJunchao Zhang 1666a1729e3fSJunchao Zhang Collective 1667a1729e3fSJunchao Zhang 16684165533cSJose E. Roman Input Parameters: 1669a1729e3fSJunchao Zhang + sf - star forest 1670a1729e3fSJunchao Zhang . unit - data type 1671a1729e3fSJunchao Zhang . leafdata - leaf values to use in reduction 1672a1729e3fSJunchao Zhang - op - operation to use for reduction 1673a1729e3fSJunchao Zhang 16744165533cSJose E. Roman Output Parameters: 1675a1729e3fSJunchao Zhang + rootdata - root values to be updated, input state is seen by first process to perform an update 1676a1729e3fSJunchao Zhang - leafupdate - state at each leaf's respective root immediately prior to my atomic update 1677a1729e3fSJunchao Zhang 1678a1729e3fSJunchao Zhang Level: advanced 1679a1729e3fSJunchao Zhang 1680a1729e3fSJunchao Zhang Note: 1681a1729e3fSJunchao Zhang The update is only atomic at the granularity provided by the hardware. Different roots referenced by the same process 1682a1729e3fSJunchao Zhang might be updated in a different order. Furthermore, if a composite type is used for the unit datatype, atomicity is 1683a1729e3fSJunchao Zhang not guaranteed across the whole vertex. Therefore, this function is mostly only used with primitive types such as 1684a1729e3fSJunchao Zhang integers. 1685a1729e3fSJunchao Zhang 1686cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFComputeDegreeBegin()`, `PetscSFReduceBegin()`, `PetscSFSetGraph()` 1687a1729e3fSJunchao Zhang @*/ 1688d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFFetchAndOpBegin(PetscSF sf, MPI_Datatype unit, void *rootdata, const void *leafdata, void *leafupdate, MPI_Op op) 1689d71ae5a4SJacob Faibussowitsch { 1690eb02082bSJunchao Zhang PetscMemType rootmtype, leafmtype, leafupdatemtype; 1691a1729e3fSJunchao Zhang 1692a1729e3fSJunchao Zhang PetscFunctionBegin; 1693a1729e3fSJunchao Zhang PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 16949566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 16959566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(PETSCSF_FetchAndOpBegin, sf, 0, 0, 0)); 16969566063dSJacob Faibussowitsch PetscCall(PetscGetMemType(rootdata, &rootmtype)); 16979566063dSJacob Faibussowitsch PetscCall(PetscGetMemType(leafdata, &leafmtype)); 16989566063dSJacob Faibussowitsch PetscCall(PetscGetMemType(leafupdate, &leafupdatemtype)); 169908401ef6SPierre Jolivet PetscCheck(leafmtype == leafupdatemtype, PETSC_COMM_SELF, PETSC_ERR_SUP, "No support for leafdata and leafupdate in different memory types"); 1700dbbe0bcdSBarry Smith PetscUseTypeMethod(sf, FetchAndOpBegin, unit, rootmtype, rootdata, leafmtype, leafdata, leafupdate, op); 17019566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(PETSCSF_FetchAndOpBegin, sf, 0, 0, 0)); 17023ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1703a1729e3fSJunchao Zhang } 1704a1729e3fSJunchao Zhang 1705a1729e3fSJunchao Zhang /*@C 1706cab54364SBarry Smith PetscSFFetchAndOpWithMemTypeBegin - begin operation with explicit memory types that fetches values from root and updates atomically by 1707cab54364SBarry Smith applying operation using my leaf value, to be completed with `PetscSFFetchAndOpEnd()` 1708d3b3e55cSJunchao Zhang 1709d3b3e55cSJunchao Zhang Collective 1710d3b3e55cSJunchao Zhang 1711d3b3e55cSJunchao Zhang Input Parameters: 1712d3b3e55cSJunchao Zhang + sf - star forest 1713d3b3e55cSJunchao Zhang . unit - data type 1714d3b3e55cSJunchao Zhang . rootmtype - memory type of rootdata 1715d3b3e55cSJunchao Zhang . leafmtype - memory type of leafdata 1716d3b3e55cSJunchao Zhang . leafdata - leaf values to use in reduction 1717d3b3e55cSJunchao Zhang . leafupdatemtype - memory type of leafupdate 1718d3b3e55cSJunchao Zhang - op - operation to use for reduction 1719d3b3e55cSJunchao Zhang 1720d3b3e55cSJunchao Zhang Output Parameters: 1721d3b3e55cSJunchao Zhang + rootdata - root values to be updated, input state is seen by first process to perform an update 1722d3b3e55cSJunchao Zhang - leafupdate - state at each leaf's respective root immediately prior to my atomic update 1723d3b3e55cSJunchao Zhang 1724d3b3e55cSJunchao Zhang Level: advanced 1725d3b3e55cSJunchao Zhang 1726cab54364SBarry Smith Note: 1727cab54364SBarry Smith See `PetscSFFetchAndOpBegin()` for more details. 1728d3b3e55cSJunchao Zhang 172920662ed9SBarry Smith .seealso: `PetscSF`, `PetscSFFetchAndOpBegin()`, `PetscSFComputeDegreeBegin()`, `PetscSFReduceBegin()`, `PetscSFSetGraph()`, `PetscSFFetchAndOpEnd()` 1730d3b3e55cSJunchao Zhang @*/ 1731d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFFetchAndOpWithMemTypeBegin(PetscSF sf, MPI_Datatype unit, PetscMemType rootmtype, void *rootdata, PetscMemType leafmtype, const void *leafdata, PetscMemType leafupdatemtype, void *leafupdate, MPI_Op op) 1732d71ae5a4SJacob Faibussowitsch { 1733d3b3e55cSJunchao Zhang PetscFunctionBegin; 1734d3b3e55cSJunchao Zhang PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 17359566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 17369566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(PETSCSF_FetchAndOpBegin, sf, 0, 0, 0)); 173708401ef6SPierre Jolivet PetscCheck(leafmtype == leafupdatemtype, PETSC_COMM_SELF, PETSC_ERR_SUP, "No support for leafdata and leafupdate in different memory types"); 1738dbbe0bcdSBarry Smith PetscUseTypeMethod(sf, FetchAndOpBegin, unit, rootmtype, rootdata, leafmtype, leafdata, leafupdate, op); 17399566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(PETSCSF_FetchAndOpBegin, sf, 0, 0, 0)); 17403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1741d3b3e55cSJunchao Zhang } 1742d3b3e55cSJunchao Zhang 1743d3b3e55cSJunchao Zhang /*@C 174420662ed9SBarry Smith PetscSFFetchAndOpEnd - end operation started in matching call to `PetscSFFetchAndOpBegin()` or `PetscSFFetchAndOpWithMemTypeBegin()` 174520662ed9SBarry Smith to fetch values from roots and update atomically by applying operation using my leaf value 1746a1729e3fSJunchao Zhang 1747a1729e3fSJunchao Zhang Collective 1748a1729e3fSJunchao Zhang 17494165533cSJose E. Roman Input Parameters: 1750a1729e3fSJunchao Zhang + sf - star forest 1751a1729e3fSJunchao Zhang . unit - data type 1752a1729e3fSJunchao Zhang . leafdata - leaf values to use in reduction 1753a1729e3fSJunchao Zhang - op - operation to use for reduction 1754a1729e3fSJunchao Zhang 17554165533cSJose E. Roman Output Parameters: 1756a1729e3fSJunchao Zhang + rootdata - root values to be updated, input state is seen by first process to perform an update 1757a1729e3fSJunchao Zhang - leafupdate - state at each leaf's respective root immediately prior to my atomic update 1758a1729e3fSJunchao Zhang 1759a1729e3fSJunchao Zhang Level: advanced 1760a1729e3fSJunchao Zhang 176120662ed9SBarry Smith .seealso: `PetscSF`, `PetscSFComputeDegreeEnd()`, `PetscSFReduceEnd()`, `PetscSFSetGraph()`, `PetscSFFetchAndOpBegin()`, `PetscSFFetchAndOpWithMemTypeBegin()` 1762a1729e3fSJunchao Zhang @*/ 1763d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFFetchAndOpEnd(PetscSF sf, MPI_Datatype unit, void *rootdata, const void *leafdata, void *leafupdate, MPI_Op op) 1764d71ae5a4SJacob Faibussowitsch { 1765a1729e3fSJunchao Zhang PetscFunctionBegin; 1766a1729e3fSJunchao Zhang PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 17679566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(PETSCSF_FetchAndOpEnd, sf, 0, 0, 0)); 1768dbbe0bcdSBarry Smith PetscUseTypeMethod(sf, FetchAndOpEnd, unit, rootdata, leafdata, leafupdate, op); 17699566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(PETSCSF_FetchAndOpEnd, sf, 0, 0, 0)); 17703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1771a1729e3fSJunchao Zhang } 1772a1729e3fSJunchao Zhang 1773a1729e3fSJunchao Zhang /*@C 1774cab54364SBarry Smith PetscSFComputeDegreeBegin - begin computation of degree for each root vertex, to be completed with `PetscSFComputeDegreeEnd()` 177595fce210SBarry Smith 177695fce210SBarry Smith Collective 177795fce210SBarry Smith 17784165533cSJose E. Roman Input Parameter: 177995fce210SBarry Smith . sf - star forest 178095fce210SBarry Smith 17814165533cSJose E. Roman Output Parameter: 178295fce210SBarry Smith . degree - degree of each root vertex 178395fce210SBarry Smith 178495fce210SBarry Smith Level: advanced 178595fce210SBarry Smith 1786cab54364SBarry Smith Note: 178720662ed9SBarry Smith The returned array is owned by `PetscSF` and automatically freed by `PetscSFDestroy()`. Hence there is no need to call `PetscFree()` on it. 1788ffe67aa5SVáclav Hapla 1789cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFGatherBegin()`, `PetscSFComputeDegreeEnd()` 179095fce210SBarry Smith @*/ 17916497c311SBarry Smith PetscErrorCode PetscSFComputeDegreeBegin(PetscSF sf, const PetscInt *degree[]) 1792d71ae5a4SJacob Faibussowitsch { 179395fce210SBarry Smith PetscFunctionBegin; 179495fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 179595fce210SBarry Smith PetscSFCheckGraphSet(sf, 1); 17964f572ea9SToby Isaac PetscAssertPointer(degree, 2); 1797803bd9e8SMatthew G. Knepley if (!sf->degreeknown) { 17985b0d146aSStefano Zampini PetscInt i, nroots = sf->nroots, maxlocal; 179928b400f6SJacob Faibussowitsch PetscCheck(!sf->degree, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Calls to PetscSFComputeDegreeBegin() cannot be nested."); 18005b0d146aSStefano Zampini maxlocal = sf->maxleaf - sf->minleaf + 1; 18019566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nroots, &sf->degree)); 18029566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(PetscMax(maxlocal, 1), &sf->degreetmp)); /* allocate at least one entry, see check in PetscSFComputeDegreeEnd() */ 180329046d53SLisandro Dalcin for (i = 0; i < nroots; i++) sf->degree[i] = 0; 18049837ea96SMatthew G. Knepley for (i = 0; i < maxlocal; i++) sf->degreetmp[i] = 1; 18059566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sf, MPIU_INT, sf->degreetmp - sf->minleaf, sf->degree, MPI_SUM)); 180695fce210SBarry Smith } 180795fce210SBarry Smith *degree = NULL; 18083ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 180995fce210SBarry Smith } 181095fce210SBarry Smith 181195fce210SBarry Smith /*@C 1812cab54364SBarry Smith PetscSFComputeDegreeEnd - complete computation of degree for each root vertex, started with `PetscSFComputeDegreeBegin()` 181395fce210SBarry Smith 181495fce210SBarry Smith Collective 181595fce210SBarry Smith 18164165533cSJose E. Roman Input Parameter: 181795fce210SBarry Smith . sf - star forest 181895fce210SBarry Smith 18194165533cSJose E. Roman Output Parameter: 182095fce210SBarry Smith . degree - degree of each root vertex 182195fce210SBarry Smith 182295fce210SBarry Smith Level: developer 182395fce210SBarry Smith 1824cab54364SBarry Smith Note: 182520662ed9SBarry Smith The returned array is owned by `PetscSF` and automatically freed by `PetscSFDestroy()`. Hence there is no need to call `PetscFree()` on it. 1826ffe67aa5SVáclav Hapla 1827cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFGatherBegin()`, `PetscSFComputeDegreeBegin()` 182895fce210SBarry Smith @*/ 1829d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFComputeDegreeEnd(PetscSF sf, const PetscInt **degree) 1830d71ae5a4SJacob Faibussowitsch { 183195fce210SBarry Smith PetscFunctionBegin; 183295fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 183395fce210SBarry Smith PetscSFCheckGraphSet(sf, 1); 18344f572ea9SToby Isaac PetscAssertPointer(degree, 2); 183595fce210SBarry Smith if (!sf->degreeknown) { 183628b400f6SJacob Faibussowitsch PetscCheck(sf->degreetmp, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Must call PetscSFComputeDegreeBegin() before PetscSFComputeDegreeEnd()"); 18379566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf, MPIU_INT, sf->degreetmp - sf->minleaf, sf->degree, MPI_SUM)); 18389566063dSJacob Faibussowitsch PetscCall(PetscFree(sf->degreetmp)); 183995fce210SBarry Smith sf->degreeknown = PETSC_TRUE; 184095fce210SBarry Smith } 184195fce210SBarry Smith *degree = sf->degree; 18423ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 184395fce210SBarry Smith } 184495fce210SBarry Smith 1845673100f5SVaclav Hapla /*@C 184620662ed9SBarry Smith PetscSFComputeMultiRootOriginalNumbering - Returns original numbering of multi-roots (roots of multi-`PetscSF` returned by `PetscSFGetMultiSF()`). 184766dfcd1aSVaclav Hapla Each multi-root is assigned index of the corresponding original root. 1848673100f5SVaclav Hapla 1849673100f5SVaclav Hapla Collective 1850673100f5SVaclav Hapla 18514165533cSJose E. Roman Input Parameters: 1852673100f5SVaclav Hapla + sf - star forest 1853cab54364SBarry Smith - degree - degree of each root vertex, computed with `PetscSFComputeDegreeBegin()`/`PetscSFComputeDegreeEnd()` 1854673100f5SVaclav Hapla 18554165533cSJose E. Roman Output Parameters: 185620662ed9SBarry Smith + nMultiRoots - (optional) number of multi-roots (roots of multi-`PetscSF`) 185720662ed9SBarry Smith - multiRootsOrigNumbering - original indices of multi-roots; length of this array is `nMultiRoots` 1858673100f5SVaclav Hapla 1859673100f5SVaclav Hapla Level: developer 1860673100f5SVaclav Hapla 1861cab54364SBarry Smith Note: 186220662ed9SBarry Smith The returned array `multiRootsOrigNumbering` is newly allocated and should be destroyed with `PetscFree()` when no longer needed. 1863ffe67aa5SVáclav Hapla 1864cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFComputeDegreeBegin()`, `PetscSFComputeDegreeEnd()`, `PetscSFGetMultiSF()` 1865673100f5SVaclav Hapla @*/ 1866d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFComputeMultiRootOriginalNumbering(PetscSF sf, const PetscInt degree[], PetscInt *nMultiRoots, PetscInt *multiRootsOrigNumbering[]) 1867d71ae5a4SJacob Faibussowitsch { 1868673100f5SVaclav Hapla PetscSF msf; 1869673100f5SVaclav Hapla PetscInt i, j, k, nroots, nmroots; 1870673100f5SVaclav Hapla 1871673100f5SVaclav Hapla PetscFunctionBegin; 1872673100f5SVaclav Hapla PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 18739566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sf, &nroots, NULL, NULL, NULL)); 18744f572ea9SToby Isaac if (nroots) PetscAssertPointer(degree, 2); 18754f572ea9SToby Isaac if (nMultiRoots) PetscAssertPointer(nMultiRoots, 3); 18764f572ea9SToby Isaac PetscAssertPointer(multiRootsOrigNumbering, 4); 18779566063dSJacob Faibussowitsch PetscCall(PetscSFGetMultiSF(sf, &msf)); 18789566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(msf, &nmroots, NULL, NULL, NULL)); 18799566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nmroots, multiRootsOrigNumbering)); 1880673100f5SVaclav Hapla for (i = 0, j = 0, k = 0; i < nroots; i++) { 1881673100f5SVaclav Hapla if (!degree[i]) continue; 1882ad540459SPierre Jolivet for (j = 0; j < degree[i]; j++, k++) (*multiRootsOrigNumbering)[k] = i; 1883673100f5SVaclav Hapla } 188408401ef6SPierre Jolivet PetscCheck(k == nmroots, PETSC_COMM_SELF, PETSC_ERR_PLIB, "sanity check fail"); 188566dfcd1aSVaclav Hapla if (nMultiRoots) *nMultiRoots = nmroots; 18863ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1887673100f5SVaclav Hapla } 1888673100f5SVaclav Hapla 188995fce210SBarry Smith /*@C 1890cab54364SBarry Smith PetscSFGatherBegin - begin pointwise gather of all leaves into multi-roots, to be completed with `PetscSFGatherEnd()` 189195fce210SBarry Smith 189295fce210SBarry Smith Collective 189395fce210SBarry Smith 18944165533cSJose E. Roman Input Parameters: 189595fce210SBarry Smith + sf - star forest 189695fce210SBarry Smith . unit - data type 189795fce210SBarry Smith - leafdata - leaf data to gather to roots 189895fce210SBarry Smith 18994165533cSJose E. Roman Output Parameter: 190095fce210SBarry Smith . multirootdata - root buffer to gather into, amount of space per root is equal to its degree 190195fce210SBarry Smith 190295fce210SBarry Smith Level: intermediate 190395fce210SBarry Smith 1904cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFComputeDegreeBegin()`, `PetscSFScatterBegin()` 190595fce210SBarry Smith @*/ 1906d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFGatherBegin(PetscSF sf, MPI_Datatype unit, const void *leafdata, void *multirootdata) 1907d71ae5a4SJacob Faibussowitsch { 1908a5526d50SJunchao Zhang PetscSF multi = NULL; 190995fce210SBarry Smith 191095fce210SBarry Smith PetscFunctionBegin; 191195fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 19129566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 19139566063dSJacob Faibussowitsch PetscCall(PetscSFGetMultiSF(sf, &multi)); 19149566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(multi, unit, leafdata, multirootdata, MPI_REPLACE)); 19153ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 191695fce210SBarry Smith } 191795fce210SBarry Smith 191895fce210SBarry Smith /*@C 1919cab54364SBarry Smith PetscSFGatherEnd - ends pointwise gather operation that was started with `PetscSFGatherBegin()` 192095fce210SBarry Smith 192195fce210SBarry Smith Collective 192295fce210SBarry Smith 19234165533cSJose E. Roman Input Parameters: 192495fce210SBarry Smith + sf - star forest 192595fce210SBarry Smith . unit - data type 192695fce210SBarry Smith - leafdata - leaf data to gather to roots 192795fce210SBarry Smith 19284165533cSJose E. Roman Output Parameter: 192995fce210SBarry Smith . multirootdata - root buffer to gather into, amount of space per root is equal to its degree 193095fce210SBarry Smith 193195fce210SBarry Smith Level: intermediate 193295fce210SBarry Smith 1933cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFComputeDegreeEnd()`, `PetscSFScatterEnd()` 193495fce210SBarry Smith @*/ 1935d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFGatherEnd(PetscSF sf, MPI_Datatype unit, const void *leafdata, void *multirootdata) 1936d71ae5a4SJacob Faibussowitsch { 1937a5526d50SJunchao Zhang PetscSF multi = NULL; 193895fce210SBarry Smith 193995fce210SBarry Smith PetscFunctionBegin; 194095fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 19419566063dSJacob Faibussowitsch PetscCall(PetscSFGetMultiSF(sf, &multi)); 19429566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(multi, unit, leafdata, multirootdata, MPI_REPLACE)); 19433ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 194495fce210SBarry Smith } 194595fce210SBarry Smith 194695fce210SBarry Smith /*@C 1947cab54364SBarry Smith PetscSFScatterBegin - begin pointwise scatter operation from multi-roots to leaves, to be completed with `PetscSFScatterEnd()` 194895fce210SBarry Smith 194995fce210SBarry Smith Collective 195095fce210SBarry Smith 19514165533cSJose E. Roman Input Parameters: 195295fce210SBarry Smith + sf - star forest 195395fce210SBarry Smith . unit - data type 195495fce210SBarry Smith - multirootdata - root buffer to send to each leaf, one unit of data per leaf 195595fce210SBarry Smith 19564165533cSJose E. Roman Output Parameter: 195795fce210SBarry Smith . leafdata - leaf data to be update with personal data from each respective root 195895fce210SBarry Smith 195995fce210SBarry Smith Level: intermediate 196095fce210SBarry Smith 196120662ed9SBarry Smith .seealso: `PetscSF`, `PetscSFComputeDegreeBegin()`, `PetscSFScatterEnd()` 196295fce210SBarry Smith @*/ 1963d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFScatterBegin(PetscSF sf, MPI_Datatype unit, const void *multirootdata, void *leafdata) 1964d71ae5a4SJacob Faibussowitsch { 1965a5526d50SJunchao Zhang PetscSF multi = NULL; 196695fce210SBarry Smith 196795fce210SBarry Smith PetscFunctionBegin; 196895fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 19699566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 19709566063dSJacob Faibussowitsch PetscCall(PetscSFGetMultiSF(sf, &multi)); 19719566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(multi, unit, multirootdata, leafdata, MPI_REPLACE)); 19723ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 197395fce210SBarry Smith } 197495fce210SBarry Smith 197595fce210SBarry Smith /*@C 1976cab54364SBarry Smith PetscSFScatterEnd - ends pointwise scatter operation that was started with `PetscSFScatterBegin()` 197795fce210SBarry Smith 197895fce210SBarry Smith Collective 197995fce210SBarry Smith 19804165533cSJose E. Roman Input Parameters: 198195fce210SBarry Smith + sf - star forest 198295fce210SBarry Smith . unit - data type 198395fce210SBarry Smith - multirootdata - root buffer to send to each leaf, one unit of data per leaf 198495fce210SBarry Smith 19854165533cSJose E. Roman Output Parameter: 198695fce210SBarry Smith . leafdata - leaf data to be update with personal data from each respective root 198795fce210SBarry Smith 198895fce210SBarry Smith Level: intermediate 198995fce210SBarry Smith 199020662ed9SBarry Smith .seealso: `PetscSF`, `PetscSFComputeDegreeEnd()`, `PetscSFScatterBegin()` 199195fce210SBarry Smith @*/ 1992d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFScatterEnd(PetscSF sf, MPI_Datatype unit, const void *multirootdata, void *leafdata) 1993d71ae5a4SJacob Faibussowitsch { 1994a5526d50SJunchao Zhang PetscSF multi = NULL; 199595fce210SBarry Smith 199695fce210SBarry Smith PetscFunctionBegin; 199795fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 19989566063dSJacob Faibussowitsch PetscCall(PetscSFGetMultiSF(sf, &multi)); 19999566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(multi, unit, multirootdata, leafdata, MPI_REPLACE)); 20003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 200195fce210SBarry Smith } 2002a7b3aa13SAta Mesgarnejad 2003d71ae5a4SJacob Faibussowitsch static PetscErrorCode PetscSFCheckLeavesUnique_Private(PetscSF sf) 2004d71ae5a4SJacob Faibussowitsch { 2005a072220fSLawrence Mitchell PetscInt i, n, nleaves; 2006a072220fSLawrence Mitchell const PetscInt *ilocal = NULL; 2007a072220fSLawrence Mitchell PetscHSetI seen; 2008a072220fSLawrence Mitchell 2009a072220fSLawrence Mitchell PetscFunctionBegin; 2010b458e8f1SJose E. Roman if (PetscDefined(USE_DEBUG)) { 20119566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sf, NULL, &nleaves, &ilocal, NULL)); 20129566063dSJacob Faibussowitsch PetscCall(PetscHSetICreate(&seen)); 2013a072220fSLawrence Mitchell for (i = 0; i < nleaves; i++) { 2014a072220fSLawrence Mitchell const PetscInt leaf = ilocal ? ilocal[i] : i; 20159566063dSJacob Faibussowitsch PetscCall(PetscHSetIAdd(seen, leaf)); 2016a072220fSLawrence Mitchell } 20179566063dSJacob Faibussowitsch PetscCall(PetscHSetIGetSize(seen, &n)); 201808401ef6SPierre Jolivet PetscCheck(n == nleaves, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Provided leaves have repeated values: all leaves must be unique"); 20199566063dSJacob Faibussowitsch PetscCall(PetscHSetIDestroy(&seen)); 2020b458e8f1SJose E. Roman } 20213ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2022a072220fSLawrence Mitchell } 202354729392SStefano Zampini 2024a7b3aa13SAta Mesgarnejad /*@ 2025cab54364SBarry Smith PetscSFCompose - Compose a new `PetscSF` by putting the second `PetscSF` under the first one in a top (roots) down (leaves) view 2026a7b3aa13SAta Mesgarnejad 2027a7b3aa13SAta Mesgarnejad Input Parameters: 2028cab54364SBarry Smith + sfA - The first `PetscSF` 2029cab54364SBarry Smith - sfB - The second `PetscSF` 2030a7b3aa13SAta Mesgarnejad 20312fe279fdSBarry Smith Output Parameter: 2032cab54364SBarry Smith . sfBA - The composite `PetscSF` 2033a7b3aa13SAta Mesgarnejad 2034a7b3aa13SAta Mesgarnejad Level: developer 2035a7b3aa13SAta Mesgarnejad 2036a072220fSLawrence Mitchell Notes: 2037cab54364SBarry Smith Currently, the two `PetscSF`s must be defined on congruent communicators and they must be true star 203854729392SStefano Zampini forests, i.e. the same leaf is not connected with different roots. 203954729392SStefano Zampini 204020662ed9SBarry Smith `sfA`'s leaf space and `sfB`'s root space might be partially overlapped. The composition builds 204120662ed9SBarry Smith a graph with `sfA`'s roots and `sfB`'s leaves only when there is a path between them. Unconnected 204220662ed9SBarry Smith nodes (roots or leaves) are not in `sfBA`. Doing a `PetscSFBcastBegin()`/`PetscSFBcastEnd()` on the new `PetscSF` is equivalent to doing a 204320662ed9SBarry Smith `PetscSFBcastBegin()`/`PetscSFBcastEnd()` on `sfA`, then a `PetscSFBcastBegin()`/`PetscSFBcastEnd()` on `sfB`, on connected nodes. 2044a072220fSLawrence Mitchell 2045db781477SPatrick Sanan .seealso: `PetscSF`, `PetscSFComposeInverse()`, `PetscSFGetGraph()`, `PetscSFSetGraph()` 2046a7b3aa13SAta Mesgarnejad @*/ 2047d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFCompose(PetscSF sfA, PetscSF sfB, PetscSF *sfBA) 2048d71ae5a4SJacob Faibussowitsch { 2049a7b3aa13SAta Mesgarnejad const PetscSFNode *remotePointsA, *remotePointsB; 2050d41018fbSJunchao Zhang PetscSFNode *remotePointsBA = NULL, *reorderedRemotePointsA = NULL, *leafdataB; 205154729392SStefano Zampini const PetscInt *localPointsA, *localPointsB; 205254729392SStefano Zampini PetscInt *localPointsBA; 205354729392SStefano Zampini PetscInt i, numRootsA, numLeavesA, numRootsB, numLeavesB, minleaf, maxleaf, numLeavesBA; 205454729392SStefano Zampini PetscBool denseB; 2055a7b3aa13SAta Mesgarnejad 2056a7b3aa13SAta Mesgarnejad PetscFunctionBegin; 2057a7b3aa13SAta Mesgarnejad PetscValidHeaderSpecific(sfA, PETSCSF_CLASSID, 1); 205829046d53SLisandro Dalcin PetscSFCheckGraphSet(sfA, 1); 205929046d53SLisandro Dalcin PetscValidHeaderSpecific(sfB, PETSCSF_CLASSID, 2); 206029046d53SLisandro Dalcin PetscSFCheckGraphSet(sfB, 2); 206154729392SStefano Zampini PetscCheckSameComm(sfA, 1, sfB, 2); 20624f572ea9SToby Isaac PetscAssertPointer(sfBA, 3); 20639566063dSJacob Faibussowitsch PetscCall(PetscSFCheckLeavesUnique_Private(sfA)); 20649566063dSJacob Faibussowitsch PetscCall(PetscSFCheckLeavesUnique_Private(sfB)); 206554729392SStefano Zampini 20669566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfA, &numRootsA, &numLeavesA, &localPointsA, &remotePointsA)); 20679566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfB, &numRootsB, &numLeavesB, &localPointsB, &remotePointsB)); 206820662ed9SBarry Smith /* Make sure that PetscSFBcast{Begin, End}(sfB, ...) works with root data of size 206920662ed9SBarry Smith numRootsB; otherwise, garbage will be broadcasted. 207020662ed9SBarry Smith Example (comm size = 1): 207120662ed9SBarry Smith sfA: 0 <- (0, 0) 207220662ed9SBarry Smith sfB: 100 <- (0, 0) 207320662ed9SBarry Smith 101 <- (0, 1) 207420662ed9SBarry Smith Here, we have remotePointsA = [(0, 0)], but for remotePointsA to be a valid tartget 207520662ed9SBarry Smith of sfB, it has to be recasted as [(0, 0), (-1, -1)] so that points 100 and 101 would 207620662ed9SBarry Smith receive (0, 0) and (-1, -1), respectively, when PetscSFBcast(sfB, ...) is called on 207720662ed9SBarry Smith remotePointsA; if not recasted, point 101 would receive a garbage value. */ 20789566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numRootsB, &reorderedRemotePointsA)); 207954729392SStefano Zampini for (i = 0; i < numRootsB; i++) { 208054729392SStefano Zampini reorderedRemotePointsA[i].rank = -1; 208154729392SStefano Zampini reorderedRemotePointsA[i].index = -1; 208254729392SStefano Zampini } 208354729392SStefano Zampini for (i = 0; i < numLeavesA; i++) { 20840ea77edaSksagiyam PetscInt localp = localPointsA ? localPointsA[i] : i; 20850ea77edaSksagiyam 20860ea77edaSksagiyam if (localp >= numRootsB) continue; 20870ea77edaSksagiyam reorderedRemotePointsA[localp] = remotePointsA[i]; 208854729392SStefano Zampini } 2089d41018fbSJunchao Zhang remotePointsA = reorderedRemotePointsA; 20909566063dSJacob Faibussowitsch PetscCall(PetscSFGetLeafRange(sfB, &minleaf, &maxleaf)); 20919566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(maxleaf - minleaf + 1, &leafdataB)); 20920ea77edaSksagiyam for (i = 0; i < maxleaf - minleaf + 1; i++) { 20930ea77edaSksagiyam leafdataB[i].rank = -1; 20940ea77edaSksagiyam leafdataB[i].index = -1; 20950ea77edaSksagiyam } 20966497c311SBarry Smith PetscCall(PetscSFBcastBegin(sfB, MPIU_SF_NODE, remotePointsA, PetscSafePointerPlusOffset(leafdataB, -minleaf), MPI_REPLACE)); 20976497c311SBarry Smith PetscCall(PetscSFBcastEnd(sfB, MPIU_SF_NODE, remotePointsA, PetscSafePointerPlusOffset(leafdataB, -minleaf), MPI_REPLACE)); 20989566063dSJacob Faibussowitsch PetscCall(PetscFree(reorderedRemotePointsA)); 2099d41018fbSJunchao Zhang 210054729392SStefano Zampini denseB = (PetscBool)!localPointsB; 210154729392SStefano Zampini for (i = 0, numLeavesBA = 0; i < numLeavesB; i++) { 210254729392SStefano Zampini if (leafdataB[localPointsB ? localPointsB[i] - minleaf : i].rank == -1) denseB = PETSC_FALSE; 210354729392SStefano Zampini else numLeavesBA++; 210454729392SStefano Zampini } 210554729392SStefano Zampini if (denseB) { 2106d41018fbSJunchao Zhang localPointsBA = NULL; 2107d41018fbSJunchao Zhang remotePointsBA = leafdataB; 2108d41018fbSJunchao Zhang } else { 21099566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numLeavesBA, &localPointsBA)); 21109566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numLeavesBA, &remotePointsBA)); 211154729392SStefano Zampini for (i = 0, numLeavesBA = 0; i < numLeavesB; i++) { 211254729392SStefano Zampini const PetscInt l = localPointsB ? localPointsB[i] : i; 211354729392SStefano Zampini 211454729392SStefano Zampini if (leafdataB[l - minleaf].rank == -1) continue; 211554729392SStefano Zampini remotePointsBA[numLeavesBA] = leafdataB[l - minleaf]; 211654729392SStefano Zampini localPointsBA[numLeavesBA] = l; 211754729392SStefano Zampini numLeavesBA++; 211854729392SStefano Zampini } 21199566063dSJacob Faibussowitsch PetscCall(PetscFree(leafdataB)); 2120d41018fbSJunchao Zhang } 21219566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)sfA), sfBA)); 21229566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(*sfBA)); 21239566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(*sfBA, numRootsA, numLeavesBA, localPointsBA, PETSC_OWN_POINTER, remotePointsBA, PETSC_OWN_POINTER)); 21243ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2125a7b3aa13SAta Mesgarnejad } 21261c6ba672SJunchao Zhang 212704c0ada0SJunchao Zhang /*@ 2128cab54364SBarry Smith PetscSFComposeInverse - Compose a new `PetscSF` by putting the inverse of the second `PetscSF` under the first one 212904c0ada0SJunchao Zhang 213004c0ada0SJunchao Zhang Input Parameters: 2131cab54364SBarry Smith + sfA - The first `PetscSF` 2132cab54364SBarry Smith - sfB - The second `PetscSF` 213304c0ada0SJunchao Zhang 21342fe279fdSBarry Smith Output Parameter: 2135cab54364SBarry Smith . sfBA - The composite `PetscSF`. 213604c0ada0SJunchao Zhang 213704c0ada0SJunchao Zhang Level: developer 213804c0ada0SJunchao Zhang 213954729392SStefano Zampini Notes: 214020662ed9SBarry Smith Currently, the two `PetscSF`s must be defined on congruent communicators and they must be true star 214154729392SStefano Zampini forests, i.e. the same leaf is not connected with different roots. Even more, all roots of the 214220662ed9SBarry Smith second `PetscSF` must have a degree of 1, i.e., no roots have more than one leaf connected. 214354729392SStefano Zampini 214420662ed9SBarry Smith `sfA`'s leaf space and `sfB`'s leaf space might be partially overlapped. The composition builds 214520662ed9SBarry Smith a graph with `sfA`'s roots and `sfB`'s roots only when there is a path between them. Unconnected 214620662ed9SBarry Smith roots are not in `sfBA`. Doing a `PetscSFBcastBegin()`/`PetscSFBcastEnd()` on the new `PetscSF` is equivalent to doing a `PetscSFBcastBegin()`/`PetscSFBcastEnd()` 214720662ed9SBarry Smith on `sfA`, then 214820662ed9SBarry Smith a `PetscSFReduceBegin()`/`PetscSFReduceEnd()` on `sfB`, on connected roots. 214954729392SStefano Zampini 2150db781477SPatrick Sanan .seealso: `PetscSF`, `PetscSFCompose()`, `PetscSFGetGraph()`, `PetscSFSetGraph()`, `PetscSFCreateInverseSF()` 215104c0ada0SJunchao Zhang @*/ 2152d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFComposeInverse(PetscSF sfA, PetscSF sfB, PetscSF *sfBA) 2153d71ae5a4SJacob Faibussowitsch { 215404c0ada0SJunchao Zhang const PetscSFNode *remotePointsA, *remotePointsB; 215504c0ada0SJunchao Zhang PetscSFNode *remotePointsBA; 215604c0ada0SJunchao Zhang const PetscInt *localPointsA, *localPointsB; 215754729392SStefano Zampini PetscSFNode *reorderedRemotePointsA = NULL; 215854729392SStefano Zampini PetscInt i, numRootsA, numLeavesA, numLeavesBA, numRootsB, numLeavesB, minleaf, maxleaf, *localPointsBA; 21595b0d146aSStefano Zampini MPI_Op op; 21605b0d146aSStefano Zampini #if defined(PETSC_USE_64BIT_INDICES) 21615b0d146aSStefano Zampini PetscBool iswin; 21625b0d146aSStefano Zampini #endif 216304c0ada0SJunchao Zhang 216404c0ada0SJunchao Zhang PetscFunctionBegin; 216504c0ada0SJunchao Zhang PetscValidHeaderSpecific(sfA, PETSCSF_CLASSID, 1); 216604c0ada0SJunchao Zhang PetscSFCheckGraphSet(sfA, 1); 216704c0ada0SJunchao Zhang PetscValidHeaderSpecific(sfB, PETSCSF_CLASSID, 2); 216804c0ada0SJunchao Zhang PetscSFCheckGraphSet(sfB, 2); 216954729392SStefano Zampini PetscCheckSameComm(sfA, 1, sfB, 2); 21704f572ea9SToby Isaac PetscAssertPointer(sfBA, 3); 21719566063dSJacob Faibussowitsch PetscCall(PetscSFCheckLeavesUnique_Private(sfA)); 21729566063dSJacob Faibussowitsch PetscCall(PetscSFCheckLeavesUnique_Private(sfB)); 217354729392SStefano Zampini 21749566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfA, &numRootsA, &numLeavesA, &localPointsA, &remotePointsA)); 21759566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfB, &numRootsB, &numLeavesB, &localPointsB, &remotePointsB)); 21765b0d146aSStefano Zampini 21775b0d146aSStefano Zampini /* TODO: Check roots of sfB have degree of 1 */ 21785b0d146aSStefano Zampini /* Once we implement it, we can replace the MPI_MAXLOC 217983df288dSJunchao Zhang with MPI_REPLACE. In that case, MPI_MAXLOC and MPI_REPLACE have the same effect. 21805b0d146aSStefano Zampini We use MPI_MAXLOC only to have a deterministic output from this routine if 21815b0d146aSStefano Zampini the root condition is not meet. 21825b0d146aSStefano Zampini */ 21835b0d146aSStefano Zampini op = MPI_MAXLOC; 21845b0d146aSStefano Zampini #if defined(PETSC_USE_64BIT_INDICES) 21855b0d146aSStefano Zampini /* we accept a non-deterministic output (if any) with PETSCSFWINDOW, since MPI_MAXLOC cannot operate on MPIU_2INT with MPI_Accumulate */ 21869566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)sfB, PETSCSFWINDOW, &iswin)); 218783df288dSJunchao Zhang if (iswin) op = MPI_REPLACE; 21885b0d146aSStefano Zampini #endif 21895b0d146aSStefano Zampini 21909566063dSJacob Faibussowitsch PetscCall(PetscSFGetLeafRange(sfB, &minleaf, &maxleaf)); 21919566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(maxleaf - minleaf + 1, &reorderedRemotePointsA)); 219254729392SStefano Zampini for (i = 0; i < maxleaf - minleaf + 1; i++) { 219354729392SStefano Zampini reorderedRemotePointsA[i].rank = -1; 219454729392SStefano Zampini reorderedRemotePointsA[i].index = -1; 219554729392SStefano Zampini } 219654729392SStefano Zampini if (localPointsA) { 219754729392SStefano Zampini for (i = 0; i < numLeavesA; i++) { 219854729392SStefano Zampini if (localPointsA[i] > maxleaf || localPointsA[i] < minleaf) continue; 219954729392SStefano Zampini reorderedRemotePointsA[localPointsA[i] - minleaf] = remotePointsA[i]; 220054729392SStefano Zampini } 220154729392SStefano Zampini } else { 220254729392SStefano Zampini for (i = 0; i < numLeavesA; i++) { 220354729392SStefano Zampini if (i > maxleaf || i < minleaf) continue; 220454729392SStefano Zampini reorderedRemotePointsA[i - minleaf] = remotePointsA[i]; 220554729392SStefano Zampini } 220654729392SStefano Zampini } 220754729392SStefano Zampini 22089566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numRootsB, &localPointsBA)); 22099566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numRootsB, &remotePointsBA)); 221054729392SStefano Zampini for (i = 0; i < numRootsB; i++) { 221154729392SStefano Zampini remotePointsBA[i].rank = -1; 221254729392SStefano Zampini remotePointsBA[i].index = -1; 221354729392SStefano Zampini } 221454729392SStefano Zampini 22156497c311SBarry Smith PetscCall(PetscSFReduceBegin(sfB, MPIU_SF_NODE, PetscSafePointerPlusOffset(reorderedRemotePointsA, -minleaf), remotePointsBA, op)); 22166497c311SBarry Smith PetscCall(PetscSFReduceEnd(sfB, MPIU_SF_NODE, PetscSafePointerPlusOffset(reorderedRemotePointsA, -minleaf), remotePointsBA, op)); 22179566063dSJacob Faibussowitsch PetscCall(PetscFree(reorderedRemotePointsA)); 221854729392SStefano Zampini for (i = 0, numLeavesBA = 0; i < numRootsB; i++) { 221954729392SStefano Zampini if (remotePointsBA[i].rank == -1) continue; 222054729392SStefano Zampini remotePointsBA[numLeavesBA].rank = remotePointsBA[i].rank; 222154729392SStefano Zampini remotePointsBA[numLeavesBA].index = remotePointsBA[i].index; 222254729392SStefano Zampini localPointsBA[numLeavesBA] = i; 222354729392SStefano Zampini numLeavesBA++; 222454729392SStefano Zampini } 22259566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)sfA), sfBA)); 22269566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(*sfBA)); 22279566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(*sfBA, numRootsA, numLeavesBA, localPointsBA, PETSC_OWN_POINTER, remotePointsBA, PETSC_OWN_POINTER)); 22283ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 222904c0ada0SJunchao Zhang } 223004c0ada0SJunchao Zhang 22311c6ba672SJunchao Zhang /* 2232cab54364SBarry Smith PetscSFCreateLocalSF_Private - Creates a local `PetscSF` that only has intra-process edges of the global `PetscSF` 22331c6ba672SJunchao Zhang 22342fe279fdSBarry Smith Input Parameter: 2235cab54364SBarry Smith . sf - The global `PetscSF` 22361c6ba672SJunchao Zhang 22372fe279fdSBarry Smith Output Parameter: 2238cab54364SBarry Smith . out - The local `PetscSF` 2239cab54364SBarry Smith 2240cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFCreate()` 22411c6ba672SJunchao Zhang */ 2242d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFCreateLocalSF_Private(PetscSF sf, PetscSF *out) 2243d71ae5a4SJacob Faibussowitsch { 22441c6ba672SJunchao Zhang MPI_Comm comm; 22451c6ba672SJunchao Zhang PetscMPIInt myrank; 22461c6ba672SJunchao Zhang const PetscInt *ilocal; 22471c6ba672SJunchao Zhang const PetscSFNode *iremote; 22481c6ba672SJunchao Zhang PetscInt i, j, nroots, nleaves, lnleaves, *lilocal; 22491c6ba672SJunchao Zhang PetscSFNode *liremote; 22501c6ba672SJunchao Zhang PetscSF lsf; 22511c6ba672SJunchao Zhang 22521c6ba672SJunchao Zhang PetscFunctionBegin; 22531c6ba672SJunchao Zhang PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 2254dbbe0bcdSBarry Smith if (sf->ops->CreateLocalSF) PetscUseTypeMethod(sf, CreateLocalSF, out); 2255dbbe0bcdSBarry Smith else { 22561c6ba672SJunchao Zhang /* Could use PetscSFCreateEmbeddedLeafSF, but since we know the comm is PETSC_COMM_SELF, we can make it fast */ 22579566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)sf, &comm)); 22589566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &myrank)); 22591c6ba672SJunchao Zhang 22601c6ba672SJunchao Zhang /* Find out local edges and build a local SF */ 22619566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sf, &nroots, &nleaves, &ilocal, &iremote)); 22629371c9d4SSatish Balay for (i = lnleaves = 0; i < nleaves; i++) { 22639371c9d4SSatish Balay if (iremote[i].rank == (PetscInt)myrank) lnleaves++; 22649371c9d4SSatish Balay } 22659566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(lnleaves, &lilocal)); 22669566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(lnleaves, &liremote)); 22671c6ba672SJunchao Zhang 22681c6ba672SJunchao Zhang for (i = j = 0; i < nleaves; i++) { 22691c6ba672SJunchao Zhang if (iremote[i].rank == (PetscInt)myrank) { 22701c6ba672SJunchao Zhang lilocal[j] = ilocal ? ilocal[i] : i; /* ilocal=NULL for contiguous storage */ 22711c6ba672SJunchao Zhang liremote[j].rank = 0; /* rank in PETSC_COMM_SELF */ 22721c6ba672SJunchao Zhang liremote[j].index = iremote[i].index; 22731c6ba672SJunchao Zhang j++; 22741c6ba672SJunchao Zhang } 22751c6ba672SJunchao Zhang } 22769566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PETSC_COMM_SELF, &lsf)); 22779566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(lsf)); 22789566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(lsf, nroots, lnleaves, lilocal, PETSC_OWN_POINTER, liremote, PETSC_OWN_POINTER)); 22799566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(lsf)); 22801c6ba672SJunchao Zhang *out = lsf; 22811c6ba672SJunchao Zhang } 22823ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 22831c6ba672SJunchao Zhang } 2284dd5b3ca6SJunchao Zhang 2285dd5b3ca6SJunchao Zhang /* Similar to PetscSFBcast, but only Bcast to leaves on rank 0 */ 2286d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFBcastToZero_Private(PetscSF sf, MPI_Datatype unit, const void *rootdata, void *leafdata) 2287d71ae5a4SJacob Faibussowitsch { 2288eb02082bSJunchao Zhang PetscMemType rootmtype, leafmtype; 2289dd5b3ca6SJunchao Zhang 2290dd5b3ca6SJunchao Zhang PetscFunctionBegin; 2291dd5b3ca6SJunchao Zhang PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 22929566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 22939566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(PETSCSF_BcastBegin, sf, 0, 0, 0)); 22949566063dSJacob Faibussowitsch PetscCall(PetscGetMemType(rootdata, &rootmtype)); 22959566063dSJacob Faibussowitsch PetscCall(PetscGetMemType(leafdata, &leafmtype)); 2296dbbe0bcdSBarry Smith PetscUseTypeMethod(sf, BcastToZero, unit, rootmtype, rootdata, leafmtype, leafdata); 22979566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(PETSCSF_BcastBegin, sf, 0, 0, 0)); 22983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2299dd5b3ca6SJunchao Zhang } 2300dd5b3ca6SJunchao Zhang 2301157edd7aSVaclav Hapla /*@ 2302cab54364SBarry Smith PetscSFConcatenate - concatenate multiple `PetscSF` into one 2303157edd7aSVaclav Hapla 2304157edd7aSVaclav Hapla Input Parameters: 2305157edd7aSVaclav Hapla + comm - the communicator 2306cab54364SBarry Smith . nsfs - the number of input `PetscSF` 2307cab54364SBarry Smith . sfs - the array of input `PetscSF` 23081f40158dSVaclav Hapla . rootMode - the root mode specifying how roots are handled 230920662ed9SBarry Smith - leafOffsets - the array of local leaf offsets, one for each input `PetscSF`, or `NULL` for contiguous storage 2310157edd7aSVaclav Hapla 23112fe279fdSBarry Smith Output Parameter: 2312cab54364SBarry Smith . newsf - The resulting `PetscSF` 2313157edd7aSVaclav Hapla 23141f40158dSVaclav Hapla Level: advanced 2315157edd7aSVaclav Hapla 2316157edd7aSVaclav Hapla Notes: 231720662ed9SBarry Smith The communicator of all `PetscSF`s in `sfs` must be comm. 2318157edd7aSVaclav Hapla 231920662ed9SBarry Smith Leaves are always concatenated locally, keeping them ordered by the input `PetscSF` index and original local order. 232020662ed9SBarry Smith 232120662ed9SBarry Smith The offsets in `leafOffsets` are added to the original leaf indices. 232220662ed9SBarry Smith 232320662ed9SBarry Smith If all input SFs use contiguous leaf storage (`ilocal` = `NULL`), `leafOffsets` can be passed as `NULL` as well. 232420662ed9SBarry Smith In this case, `NULL` is also passed as `ilocal` to the resulting `PetscSF`. 232520662ed9SBarry Smith 232620662ed9SBarry Smith If any input `PetscSF` has non-null `ilocal`, `leafOffsets` is needed to distinguish leaves from different input `PetscSF`s. 2327157edd7aSVaclav Hapla In this case, user is responsible to provide correct offsets so that the resulting leaves are unique (otherwise an error occurs). 2328157edd7aSVaclav Hapla 232920662ed9SBarry Smith All root modes retain the essential connectivity condition. 233020662ed9SBarry Smith If two leaves of the same input `PetscSF` are connected (sharing the same root), they are also connected in the output `PetscSF`. 233120662ed9SBarry Smith Parameter `rootMode` controls how the input root spaces are combined. 233220662ed9SBarry Smith For `PETSCSF_CONCATENATE_ROOTMODE_SHARED`, the root space is considered the same for each input `PetscSF` (checked in debug mode) 233320662ed9SBarry Smith and is also the same in the output `PetscSF`. 23341f40158dSVaclav Hapla For `PETSCSF_CONCATENATE_ROOTMODE_LOCAL` and `PETSCSF_CONCATENATE_ROOTMODE_GLOBAL`, the input root spaces are taken as separate and joined. 23351f40158dSVaclav Hapla `PETSCSF_CONCATENATE_ROOTMODE_LOCAL` joins the root spaces locally; 233620662ed9SBarry Smith roots of sfs[0], sfs[1], sfs[2], ... are joined on each rank separately, ordered by input `PetscSF` and original local index, and renumbered contiguously. 23371f40158dSVaclav Hapla `PETSCSF_CONCATENATE_ROOTMODE_GLOBAL` joins the root spaces globally; 23381593df67SStefano Zampini roots of sfs[0], sfs[1], sfs[2], ... are joined globally, ordered by input `PetscSF` index and original global index, and renumbered contiguously; 23391f40158dSVaclav Hapla the original root ranks are ignored. 23401f40158dSVaclav Hapla For both `PETSCSF_CONCATENATE_ROOTMODE_LOCAL` and `PETSCSF_CONCATENATE_ROOTMODE_GLOBAL`, 234120662ed9SBarry Smith the output `PetscSF`'s root layout is such that the local number of roots is a sum of the input `PetscSF`'s local numbers of roots on each rank 234220662ed9SBarry Smith to keep the load balancing. 234320662ed9SBarry Smith However, for `PETSCSF_CONCATENATE_ROOTMODE_GLOBAL`, roots can move to different ranks. 23441f40158dSVaclav Hapla 23451f40158dSVaclav Hapla Example: 23461f40158dSVaclav Hapla We can use src/vec/is/sf/tests/ex18.c to compare the root modes. By running 234720662ed9SBarry Smith .vb 234820662ed9SBarry Smith make -C $PETSC_DIR/src/vec/is/sf/tests ex18 234920662ed9SBarry Smith for m in {local,global,shared}; do 235020662ed9SBarry Smith mpirun -n 2 $PETSC_DIR/src/vec/is/sf/tests/ex18 -nsfs 2 -n 2 -root_mode $m -sf_view 235120662ed9SBarry Smith done 235220662ed9SBarry Smith .ve 235320662ed9SBarry Smith we generate two identical `PetscSF`s sf_0 and sf_1, 235420662ed9SBarry Smith .vb 235520662ed9SBarry Smith PetscSF Object: sf_0 2 MPI processes 235620662ed9SBarry Smith type: basic 235720662ed9SBarry Smith rank #leaves #roots 235820662ed9SBarry Smith [ 0] 4 2 235920662ed9SBarry Smith [ 1] 4 2 236020662ed9SBarry Smith leaves roots roots in global numbering 236120662ed9SBarry Smith ( 0, 0) <- ( 0, 0) = 0 236220662ed9SBarry Smith ( 0, 1) <- ( 0, 1) = 1 236320662ed9SBarry Smith ( 0, 2) <- ( 1, 0) = 2 236420662ed9SBarry Smith ( 0, 3) <- ( 1, 1) = 3 236520662ed9SBarry Smith ( 1, 0) <- ( 0, 0) = 0 236620662ed9SBarry Smith ( 1, 1) <- ( 0, 1) = 1 236720662ed9SBarry Smith ( 1, 2) <- ( 1, 0) = 2 236820662ed9SBarry Smith ( 1, 3) <- ( 1, 1) = 3 236920662ed9SBarry Smith .ve 2370e33f79d8SJacob Faibussowitsch and pass them to `PetscSFConcatenate()` along with different choices of `rootMode`, yielding different result_sf\: 237120662ed9SBarry Smith .vb 237220662ed9SBarry Smith rootMode = local: 237320662ed9SBarry Smith PetscSF Object: result_sf 2 MPI processes 237420662ed9SBarry Smith type: basic 237520662ed9SBarry Smith rank #leaves #roots 237620662ed9SBarry Smith [ 0] 8 4 237720662ed9SBarry Smith [ 1] 8 4 237820662ed9SBarry Smith leaves roots roots in global numbering 237920662ed9SBarry Smith ( 0, 0) <- ( 0, 0) = 0 238020662ed9SBarry Smith ( 0, 1) <- ( 0, 1) = 1 238120662ed9SBarry Smith ( 0, 2) <- ( 1, 0) = 4 238220662ed9SBarry Smith ( 0, 3) <- ( 1, 1) = 5 238320662ed9SBarry Smith ( 0, 4) <- ( 0, 2) = 2 238420662ed9SBarry Smith ( 0, 5) <- ( 0, 3) = 3 238520662ed9SBarry Smith ( 0, 6) <- ( 1, 2) = 6 238620662ed9SBarry Smith ( 0, 7) <- ( 1, 3) = 7 238720662ed9SBarry Smith ( 1, 0) <- ( 0, 0) = 0 238820662ed9SBarry Smith ( 1, 1) <- ( 0, 1) = 1 238920662ed9SBarry Smith ( 1, 2) <- ( 1, 0) = 4 239020662ed9SBarry Smith ( 1, 3) <- ( 1, 1) = 5 239120662ed9SBarry Smith ( 1, 4) <- ( 0, 2) = 2 239220662ed9SBarry Smith ( 1, 5) <- ( 0, 3) = 3 239320662ed9SBarry Smith ( 1, 6) <- ( 1, 2) = 6 239420662ed9SBarry Smith ( 1, 7) <- ( 1, 3) = 7 239520662ed9SBarry Smith 239620662ed9SBarry Smith rootMode = global: 239720662ed9SBarry Smith PetscSF Object: result_sf 2 MPI processes 239820662ed9SBarry Smith type: basic 239920662ed9SBarry Smith rank #leaves #roots 240020662ed9SBarry Smith [ 0] 8 4 240120662ed9SBarry Smith [ 1] 8 4 240220662ed9SBarry Smith leaves roots roots in global numbering 240320662ed9SBarry Smith ( 0, 0) <- ( 0, 0) = 0 240420662ed9SBarry Smith ( 0, 1) <- ( 0, 1) = 1 240520662ed9SBarry Smith ( 0, 2) <- ( 0, 2) = 2 240620662ed9SBarry Smith ( 0, 3) <- ( 0, 3) = 3 240720662ed9SBarry Smith ( 0, 4) <- ( 1, 0) = 4 240820662ed9SBarry Smith ( 0, 5) <- ( 1, 1) = 5 240920662ed9SBarry Smith ( 0, 6) <- ( 1, 2) = 6 241020662ed9SBarry Smith ( 0, 7) <- ( 1, 3) = 7 241120662ed9SBarry Smith ( 1, 0) <- ( 0, 0) = 0 241220662ed9SBarry Smith ( 1, 1) <- ( 0, 1) = 1 241320662ed9SBarry Smith ( 1, 2) <- ( 0, 2) = 2 241420662ed9SBarry Smith ( 1, 3) <- ( 0, 3) = 3 241520662ed9SBarry Smith ( 1, 4) <- ( 1, 0) = 4 241620662ed9SBarry Smith ( 1, 5) <- ( 1, 1) = 5 241720662ed9SBarry Smith ( 1, 6) <- ( 1, 2) = 6 241820662ed9SBarry Smith ( 1, 7) <- ( 1, 3) = 7 241920662ed9SBarry Smith 242020662ed9SBarry Smith rootMode = shared: 242120662ed9SBarry Smith PetscSF Object: result_sf 2 MPI processes 242220662ed9SBarry Smith type: basic 242320662ed9SBarry Smith rank #leaves #roots 242420662ed9SBarry Smith [ 0] 8 2 242520662ed9SBarry Smith [ 1] 8 2 242620662ed9SBarry Smith leaves roots roots in global numbering 242720662ed9SBarry Smith ( 0, 0) <- ( 0, 0) = 0 242820662ed9SBarry Smith ( 0, 1) <- ( 0, 1) = 1 242920662ed9SBarry Smith ( 0, 2) <- ( 1, 0) = 2 243020662ed9SBarry Smith ( 0, 3) <- ( 1, 1) = 3 243120662ed9SBarry Smith ( 0, 4) <- ( 0, 0) = 0 243220662ed9SBarry Smith ( 0, 5) <- ( 0, 1) = 1 243320662ed9SBarry Smith ( 0, 6) <- ( 1, 0) = 2 243420662ed9SBarry Smith ( 0, 7) <- ( 1, 1) = 3 243520662ed9SBarry Smith ( 1, 0) <- ( 0, 0) = 0 243620662ed9SBarry Smith ( 1, 1) <- ( 0, 1) = 1 243720662ed9SBarry Smith ( 1, 2) <- ( 1, 0) = 2 243820662ed9SBarry Smith ( 1, 3) <- ( 1, 1) = 3 243920662ed9SBarry Smith ( 1, 4) <- ( 0, 0) = 0 244020662ed9SBarry Smith ( 1, 5) <- ( 0, 1) = 1 244120662ed9SBarry Smith ( 1, 6) <- ( 1, 0) = 2 244220662ed9SBarry Smith ( 1, 7) <- ( 1, 1) = 3 244320662ed9SBarry Smith .ve 24441f40158dSVaclav Hapla 24451f40158dSVaclav Hapla .seealso: `PetscSF`, `PetscSFCompose()`, `PetscSFGetGraph()`, `PetscSFSetGraph()`, `PetscSFConcatenateRootMode` 2446157edd7aSVaclav Hapla @*/ 24471f40158dSVaclav Hapla PetscErrorCode PetscSFConcatenate(MPI_Comm comm, PetscInt nsfs, PetscSF sfs[], PetscSFConcatenateRootMode rootMode, PetscInt leafOffsets[], PetscSF *newsf) 2448d71ae5a4SJacob Faibussowitsch { 2449157edd7aSVaclav Hapla PetscInt i, s, nLeaves, nRoots; 2450157edd7aSVaclav Hapla PetscInt *leafArrayOffsets; 2451157edd7aSVaclav Hapla PetscInt *ilocal_new; 2452157edd7aSVaclav Hapla PetscSFNode *iremote_new; 2453157edd7aSVaclav Hapla PetscBool all_ilocal_null = PETSC_FALSE; 24541f40158dSVaclav Hapla PetscLayout glayout = NULL; 24551f40158dSVaclav Hapla PetscInt *gremote = NULL; 24561f40158dSVaclav Hapla PetscMPIInt rank, size; 2457157edd7aSVaclav Hapla 2458157edd7aSVaclav Hapla PetscFunctionBegin; 245912f479c1SVaclav Hapla if (PetscDefined(USE_DEBUG)) { 2460157edd7aSVaclav Hapla PetscSF dummy; /* just to have a PetscObject on comm for input validation */ 2461157edd7aSVaclav Hapla 24629566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &dummy)); 2463157edd7aSVaclav Hapla PetscValidLogicalCollectiveInt(dummy, nsfs, 2); 24644f572ea9SToby Isaac PetscAssertPointer(sfs, 3); 2465157edd7aSVaclav Hapla for (i = 0; i < nsfs; i++) { 2466157edd7aSVaclav Hapla PetscValidHeaderSpecific(sfs[i], PETSCSF_CLASSID, 3); 2467157edd7aSVaclav Hapla PetscCheckSameComm(dummy, 1, sfs[i], 3); 2468157edd7aSVaclav Hapla } 24691f40158dSVaclav Hapla PetscValidLogicalCollectiveEnum(dummy, rootMode, 4); 24704f572ea9SToby Isaac if (leafOffsets) PetscAssertPointer(leafOffsets, 5); 24714f572ea9SToby Isaac PetscAssertPointer(newsf, 6); 24729566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&dummy)); 2473157edd7aSVaclav Hapla } 2474157edd7aSVaclav Hapla if (!nsfs) { 24759566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, newsf)); 24769566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(*newsf, 0, 0, NULL, PETSC_OWN_POINTER, NULL, PETSC_OWN_POINTER)); 24773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2478157edd7aSVaclav Hapla } 24799566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 24801f40158dSVaclav Hapla PetscCallMPI(MPI_Comm_size(comm, &size)); 2481157edd7aSVaclav Hapla 24821f40158dSVaclav Hapla /* Calculate leaf array offsets */ 24839566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nsfs + 1, &leafArrayOffsets)); 2484157edd7aSVaclav Hapla leafArrayOffsets[0] = 0; 2485157edd7aSVaclav Hapla for (s = 0; s < nsfs; s++) { 2486157edd7aSVaclav Hapla PetscInt nl; 2487157edd7aSVaclav Hapla 24889566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfs[s], NULL, &nl, NULL, NULL)); 2489157edd7aSVaclav Hapla leafArrayOffsets[s + 1] = leafArrayOffsets[s] + nl; 2490157edd7aSVaclav Hapla } 2491157edd7aSVaclav Hapla nLeaves = leafArrayOffsets[nsfs]; 2492157edd7aSVaclav Hapla 24931f40158dSVaclav Hapla /* Calculate number of roots */ 24941f40158dSVaclav Hapla switch (rootMode) { 24951f40158dSVaclav Hapla case PETSCSF_CONCATENATE_ROOTMODE_SHARED: { 24961f40158dSVaclav Hapla PetscCall(PetscSFGetGraph(sfs[0], &nRoots, NULL, NULL, NULL)); 24971f40158dSVaclav Hapla if (PetscDefined(USE_DEBUG)) { 24981f40158dSVaclav Hapla for (s = 1; s < nsfs; s++) { 24991f40158dSVaclav Hapla PetscInt nr; 25001f40158dSVaclav Hapla 25011f40158dSVaclav Hapla PetscCall(PetscSFGetGraph(sfs[s], &nr, NULL, NULL, NULL)); 25021f40158dSVaclav Hapla PetscCheck(nr == nRoots, comm, PETSC_ERR_ARG_SIZ, "rootMode = %s but sfs[%" PetscInt_FMT "] has a different number of roots (%" PetscInt_FMT ") than sfs[0] (%" PetscInt_FMT ")", PetscSFConcatenateRootModes[rootMode], s, nr, nRoots); 25031f40158dSVaclav Hapla } 25041f40158dSVaclav Hapla } 25051f40158dSVaclav Hapla } break; 25061f40158dSVaclav Hapla case PETSCSF_CONCATENATE_ROOTMODE_GLOBAL: { 25071f40158dSVaclav Hapla /* Calculate also global layout in this case */ 25081f40158dSVaclav Hapla PetscInt *nls; 25091f40158dSVaclav Hapla PetscLayout *lts; 25101f40158dSVaclav Hapla PetscInt **inds; 25111f40158dSVaclav Hapla PetscInt j; 25121f40158dSVaclav Hapla PetscInt rootOffset = 0; 25131f40158dSVaclav Hapla 25141f40158dSVaclav Hapla PetscCall(PetscCalloc3(nsfs, <s, nsfs, &nls, nsfs, &inds)); 25151f40158dSVaclav Hapla PetscCall(PetscLayoutCreate(comm, &glayout)); 25161f40158dSVaclav Hapla glayout->bs = 1; 25171f40158dSVaclav Hapla glayout->n = 0; 25181f40158dSVaclav Hapla glayout->N = 0; 25191f40158dSVaclav Hapla for (s = 0; s < nsfs; s++) { 25201f40158dSVaclav Hapla PetscCall(PetscSFGetGraphLayout(sfs[s], <s[s], &nls[s], NULL, &inds[s])); 25211f40158dSVaclav Hapla glayout->n += lts[s]->n; 25221f40158dSVaclav Hapla glayout->N += lts[s]->N; 25231f40158dSVaclav Hapla } 25241f40158dSVaclav Hapla PetscCall(PetscLayoutSetUp(glayout)); 25251f40158dSVaclav Hapla PetscCall(PetscMalloc1(nLeaves, &gremote)); 25261f40158dSVaclav Hapla for (s = 0, j = 0; s < nsfs; s++) { 25271f40158dSVaclav Hapla for (i = 0; i < nls[s]; i++, j++) gremote[j] = inds[s][i] + rootOffset; 25281f40158dSVaclav Hapla rootOffset += lts[s]->N; 25291f40158dSVaclav Hapla PetscCall(PetscLayoutDestroy(<s[s])); 25301f40158dSVaclav Hapla PetscCall(PetscFree(inds[s])); 25311f40158dSVaclav Hapla } 25321f40158dSVaclav Hapla PetscCall(PetscFree3(lts, nls, inds)); 25331f40158dSVaclav Hapla nRoots = glayout->N; 25341f40158dSVaclav Hapla } break; 25351f40158dSVaclav Hapla case PETSCSF_CONCATENATE_ROOTMODE_LOCAL: 25361f40158dSVaclav Hapla /* nRoots calculated later in this case */ 25371f40158dSVaclav Hapla break; 25381f40158dSVaclav Hapla default: 25391f40158dSVaclav Hapla SETERRQ(comm, PETSC_ERR_ARG_WRONG, "Invalid PetscSFConcatenateRootMode %d", rootMode); 25401f40158dSVaclav Hapla } 25411f40158dSVaclav Hapla 2542157edd7aSVaclav Hapla if (!leafOffsets) { 2543157edd7aSVaclav Hapla all_ilocal_null = PETSC_TRUE; 2544157edd7aSVaclav Hapla for (s = 0; s < nsfs; s++) { 2545157edd7aSVaclav Hapla const PetscInt *ilocal; 2546157edd7aSVaclav Hapla 25479566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfs[s], NULL, NULL, &ilocal, NULL)); 2548157edd7aSVaclav Hapla if (ilocal) { 2549157edd7aSVaclav Hapla all_ilocal_null = PETSC_FALSE; 2550157edd7aSVaclav Hapla break; 2551157edd7aSVaclav Hapla } 2552157edd7aSVaclav Hapla } 2553157edd7aSVaclav Hapla PetscCheck(all_ilocal_null, PETSC_COMM_SELF, PETSC_ERR_ARG_NULL, "leafOffsets can be passed as NULL only if all SFs have ilocal = NULL"); 2554157edd7aSVaclav Hapla } 2555157edd7aSVaclav Hapla 2556157edd7aSVaclav Hapla /* Renumber and concatenate local leaves */ 2557157edd7aSVaclav Hapla ilocal_new = NULL; 2558157edd7aSVaclav Hapla if (!all_ilocal_null) { 25599566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nLeaves, &ilocal_new)); 2560157edd7aSVaclav Hapla for (i = 0; i < nLeaves; i++) ilocal_new[i] = -1; 2561157edd7aSVaclav Hapla for (s = 0; s < nsfs; s++) { 2562157edd7aSVaclav Hapla const PetscInt *ilocal; 25638e3a54c0SPierre Jolivet PetscInt *ilocal_l = PetscSafePointerPlusOffset(ilocal_new, leafArrayOffsets[s]); 2564157edd7aSVaclav Hapla PetscInt i, nleaves_l; 2565157edd7aSVaclav Hapla 25669566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfs[s], NULL, &nleaves_l, &ilocal, NULL)); 2567157edd7aSVaclav Hapla for (i = 0; i < nleaves_l; i++) ilocal_l[i] = (ilocal ? ilocal[i] : i) + leafOffsets[s]; 2568157edd7aSVaclav Hapla } 2569157edd7aSVaclav Hapla } 2570157edd7aSVaclav Hapla 2571157edd7aSVaclav Hapla /* Renumber and concatenate remote roots */ 25721f40158dSVaclav Hapla if (rootMode == PETSCSF_CONCATENATE_ROOTMODE_LOCAL || rootMode == PETSCSF_CONCATENATE_ROOTMODE_SHARED) { 25731f40158dSVaclav Hapla PetscInt rootOffset = 0; 25741f40158dSVaclav Hapla 25759566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nLeaves, &iremote_new)); 2576157edd7aSVaclav Hapla for (i = 0; i < nLeaves; i++) { 2577157edd7aSVaclav Hapla iremote_new[i].rank = -1; 2578157edd7aSVaclav Hapla iremote_new[i].index = -1; 2579157edd7aSVaclav Hapla } 2580157edd7aSVaclav Hapla for (s = 0; s < nsfs; s++) { 2581157edd7aSVaclav Hapla PetscInt i, nl, nr; 2582157edd7aSVaclav Hapla PetscSF tmp_sf; 2583157edd7aSVaclav Hapla const PetscSFNode *iremote; 2584157edd7aSVaclav Hapla PetscSFNode *tmp_rootdata; 25858e3a54c0SPierre Jolivet PetscSFNode *tmp_leafdata = PetscSafePointerPlusOffset(iremote_new, leafArrayOffsets[s]); 2586157edd7aSVaclav Hapla 25879566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfs[s], &nr, &nl, NULL, &iremote)); 25889566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &tmp_sf)); 2589157edd7aSVaclav Hapla /* create helper SF with contiguous leaves */ 25909566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(tmp_sf, nr, nl, NULL, PETSC_USE_POINTER, (PetscSFNode *)iremote, PETSC_COPY_VALUES)); 25919566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(tmp_sf)); 25929566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nr, &tmp_rootdata)); 25931f40158dSVaclav Hapla if (rootMode == PETSCSF_CONCATENATE_ROOTMODE_LOCAL) { 2594157edd7aSVaclav Hapla for (i = 0; i < nr; i++) { 25951f40158dSVaclav Hapla tmp_rootdata[i].index = i + rootOffset; 25966497c311SBarry Smith tmp_rootdata[i].rank = rank; 2597157edd7aSVaclav Hapla } 25981f40158dSVaclav Hapla rootOffset += nr; 25991f40158dSVaclav Hapla } else { 26001f40158dSVaclav Hapla for (i = 0; i < nr; i++) { 26011f40158dSVaclav Hapla tmp_rootdata[i].index = i; 26026497c311SBarry Smith tmp_rootdata[i].rank = rank; 26031f40158dSVaclav Hapla } 26041f40158dSVaclav Hapla } 26056497c311SBarry Smith PetscCall(PetscSFBcastBegin(tmp_sf, MPIU_SF_NODE, tmp_rootdata, tmp_leafdata, MPI_REPLACE)); 26066497c311SBarry Smith PetscCall(PetscSFBcastEnd(tmp_sf, MPIU_SF_NODE, tmp_rootdata, tmp_leafdata, MPI_REPLACE)); 26079566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&tmp_sf)); 26089566063dSJacob Faibussowitsch PetscCall(PetscFree(tmp_rootdata)); 2609157edd7aSVaclav Hapla } 2610aa624791SPierre Jolivet if (rootMode == PETSCSF_CONCATENATE_ROOTMODE_LOCAL) nRoots = rootOffset; // else nRoots already calculated above 2611157edd7aSVaclav Hapla 2612157edd7aSVaclav Hapla /* Build the new SF */ 26139566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, newsf)); 26149566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(*newsf, nRoots, nLeaves, ilocal_new, PETSC_OWN_POINTER, iremote_new, PETSC_OWN_POINTER)); 26151f40158dSVaclav Hapla } else { 26161f40158dSVaclav Hapla /* Build the new SF */ 26171f40158dSVaclav Hapla PetscCall(PetscSFCreate(comm, newsf)); 26181f40158dSVaclav Hapla PetscCall(PetscSFSetGraphLayout(*newsf, glayout, nLeaves, ilocal_new, PETSC_OWN_POINTER, gremote)); 26191f40158dSVaclav Hapla } 26209566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(*newsf)); 26211f40158dSVaclav Hapla PetscCall(PetscSFViewFromOptions(*newsf, NULL, "-sf_concat_view")); 26221f40158dSVaclav Hapla PetscCall(PetscLayoutDestroy(&glayout)); 26231f40158dSVaclav Hapla PetscCall(PetscFree(gremote)); 26249566063dSJacob Faibussowitsch PetscCall(PetscFree(leafArrayOffsets)); 26253ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2626157edd7aSVaclav Hapla } 26278e54d7e8SToby Isaac 26288e54d7e8SToby Isaac /*@ 26298e54d7e8SToby Isaac PetscSFRegisterPersistent - Register root and leaf data as memory regions that will be used for repeated PetscSF communications. 26308e54d7e8SToby Isaac 26318e54d7e8SToby Isaac Collective 26328e54d7e8SToby Isaac 26338e54d7e8SToby Isaac Input Parameters: 26348e54d7e8SToby Isaac + sf - star forest 26358e54d7e8SToby Isaac . unit - the data type contained within the root and leaf data 26368e54d7e8SToby Isaac . rootdata - root data that will be used for muliple PetscSF communications 26378e54d7e8SToby Isaac - leafdata - leaf data that will be used for muliple PetscSF communications 26388e54d7e8SToby Isaac 26398e54d7e8SToby Isaac Level: advanced 26408e54d7e8SToby Isaac 26418e54d7e8SToby Isaac Notes: 26428e54d7e8SToby Isaac Implementations of `PetscSF` can make optimizations 26438e54d7e8SToby Isaac for repeated communication using the same memory regions, but these optimizations 26448e54d7e8SToby Isaac can be unsound if `rootdata` or `leafdata` is deallocated and the `PetscSF` is not informed. 26458e54d7e8SToby Isaac The intended pattern is 26468e54d7e8SToby Isaac 26478e54d7e8SToby Isaac .vb 26488e54d7e8SToby Isaac PetscMalloc2(nroots, &rootdata, nleaves, &leafdata); 26498e54d7e8SToby Isaac 26508e54d7e8SToby Isaac PetscSFRegisterPersistent(sf, unit, rootdata, leafdata); 26518e54d7e8SToby Isaac // repeated use of rootdata and leafdata will now be optimized 26528e54d7e8SToby Isaac 26538e54d7e8SToby Isaac PetscSFBcastBegin(sf, unit, rootdata, leafdata, MPI_REPLACE); 26548e54d7e8SToby Isaac PetscSFBcastEnd(sf, unit, rootdata, leafdata, MPI_REPLACE); 26558e54d7e8SToby Isaac // ... 26568e54d7e8SToby Isaac PetscSFReduceBegin(sf, unit, leafdata, rootdata, MPI_SUM); 26578e54d7e8SToby Isaac PetscSFReduceEnd(sf, unit, leafdata, rootdata, MPI_SUM); 26588e54d7e8SToby Isaac // ... (other communications) 26598e54d7e8SToby Isaac 26608e54d7e8SToby Isaac // rootdata and leafdata must be deregistered before freeing 26618e54d7e8SToby Isaac // skipping this can lead to undefined behavior including 26628e54d7e8SToby Isaac // deadlocks 26638e54d7e8SToby Isaac PetscSFDeregisterPersistent(sf, unit, rootdata, leafdata); 26648e54d7e8SToby Isaac 26658e54d7e8SToby Isaac // it is now safe to free rootdata and leafdata 26668e54d7e8SToby Isaac PetscFree2(rootdata, leafdata); 26678e54d7e8SToby Isaac .ve 26688e54d7e8SToby Isaac 26698e54d7e8SToby Isaac If you do not register `rootdata` and `leafdata` it will not cause an error, 26708e54d7e8SToby Isaac but optimizations that reduce the setup time for each communication cannot be 26718e54d7e8SToby Isaac made. Currently, the only implementation of `PetscSF` that benefits from 26728e54d7e8SToby Isaac `PetscSFRegisterPersistent()` is `PETSCSFWINDOW`. For the default 26738e54d7e8SToby Isaac `PETSCSFBASIC` there is no benefit to using `PetscSFRegisterPersistent()`. 26748e54d7e8SToby Isaac 26758e54d7e8SToby Isaac .seealso: `PetscSF`, `PETSCSFWINDOW`, `PetscSFDeregisterPersistent()` 26768e54d7e8SToby Isaac @*/ 26778e54d7e8SToby Isaac PetscErrorCode PetscSFRegisterPersistent(PetscSF sf, MPI_Datatype unit, const void *rootdata, const void *leafdata) 26788e54d7e8SToby Isaac { 26798e54d7e8SToby Isaac PetscFunctionBegin; 26808e54d7e8SToby Isaac PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 26818e54d7e8SToby Isaac PetscTryMethod(sf, "PetscSFRegisterPersistent_C", (PetscSF, MPI_Datatype, const void *, const void *), (sf, unit, rootdata, leafdata)); 26828e54d7e8SToby Isaac PetscFunctionReturn(PETSC_SUCCESS); 26838e54d7e8SToby Isaac } 26848e54d7e8SToby Isaac 26858e54d7e8SToby Isaac /*@ 26868e54d7e8SToby Isaac PetscSFDeregisterPersistent - Signal that repeated usage of root and leaf data for PetscSF communication has concluded. 26878e54d7e8SToby Isaac 26888e54d7e8SToby Isaac Collective 26898e54d7e8SToby Isaac 26908e54d7e8SToby Isaac Input Parameters: 26918e54d7e8SToby Isaac + sf - star forest 26928e54d7e8SToby Isaac . unit - the data type contained within the root and leaf data 26938e54d7e8SToby Isaac . rootdata - root data that was previously registered with `PetscSFRegisterPersistent()` 26948e54d7e8SToby Isaac - leafdata - leaf data that was previously registered with `PetscSFRegisterPersistent()` 26958e54d7e8SToby Isaac 26968e54d7e8SToby Isaac Level: advanced 26978e54d7e8SToby Isaac 26988e54d7e8SToby Isaac Note: 26998e54d7e8SToby Isaac See `PetscSFRegisterPersistent()` for when/how to use this function. 27008e54d7e8SToby Isaac 27018e54d7e8SToby Isaac .seealso: `PetscSF`, `PETSCSFWINDOW`, `PetscSFRegisterPersistent()` 27028e54d7e8SToby Isaac @*/ 27038e54d7e8SToby Isaac PetscErrorCode PetscSFDeregisterPersistent(PetscSF sf, MPI_Datatype unit, const void *rootdata, const void *leafdata) 27048e54d7e8SToby Isaac { 27058e54d7e8SToby Isaac PetscFunctionBegin; 27068e54d7e8SToby Isaac PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 27078e54d7e8SToby Isaac PetscTryMethod(sf, "PetscSFDeregisterPersistent_C", (PetscSF, MPI_Datatype, const void *, const void *), (sf, unit, rootdata, leafdata)); 27088e54d7e8SToby Isaac PetscFunctionReturn(PETSC_SUCCESS); 27098e54d7e8SToby Isaac } 2710e1187f0dSToby Isaac 2711e1187f0dSToby Isaac PETSC_INTERN PetscErrorCode PetscSFGetDatatypeSize_Internal(MPI_Comm comm, MPI_Datatype unit, MPI_Aint *size) 2712e1187f0dSToby Isaac { 2713e1187f0dSToby Isaac MPI_Aint lb, lb_true, bytes, bytes_true; 2714e1187f0dSToby Isaac 2715e1187f0dSToby Isaac PetscFunctionBegin; 2716e1187f0dSToby Isaac PetscCallMPI(MPI_Type_get_extent(unit, &lb, &bytes)); 2717e1187f0dSToby Isaac PetscCallMPI(MPI_Type_get_true_extent(unit, &lb_true, &bytes_true)); 2718e1187f0dSToby Isaac PetscCheck(lb == 0 && lb_true == 0, comm, PETSC_ERR_SUP, "No support for unit type with nonzero lower bound, write petsc-maint@mcs.anl.gov if you want this feature"); 2719e1187f0dSToby Isaac *size = bytes; 2720e1187f0dSToby Isaac PetscFunctionReturn(PETSC_SUCCESS); 2721e1187f0dSToby Isaac } 2722