xref: /petsc/src/vec/is/sf/interface/sf.c (revision 1f40158d35d5ff0329d557bfb959c787d52feacc)
1af0996ceSBarry Smith #include <petsc/private/sfimpl.h> /*I "petscsf.h" I*/
2c4e6a40aSLawrence Mitchell #include <petsc/private/hashseti.h>
353dd6d7dSJunchao Zhang #include <petsc/private/viewerimpl.h>
495fce210SBarry Smith #include <petscctable.h>
595fce210SBarry Smith 
67fd2d3dbSJunchao Zhang #if defined(PETSC_HAVE_CUDA)
77fd2d3dbSJunchao Zhang   #include <cuda_runtime.h>
87fd2d3dbSJunchao Zhang #endif
97fd2d3dbSJunchao Zhang 
107fd2d3dbSJunchao Zhang #if defined(PETSC_HAVE_HIP)
117fd2d3dbSJunchao Zhang   #include <hip/hip_runtime.h>
127fd2d3dbSJunchao Zhang #endif
137fd2d3dbSJunchao Zhang 
142abc8c78SJacob Faibussowitsch #if defined(PETSC_CLANG_STATIC_ANALYZER)
152abc8c78SJacob Faibussowitsch void PetscSFCheckGraphSet(PetscSF, int);
162abc8c78SJacob Faibussowitsch #else
1795fce210SBarry Smith   #if defined(PETSC_USE_DEBUG)
187a46b595SBarry Smith     #define PetscSFCheckGraphSet(sf, arg) PetscCheck((sf)->graphset, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Must call PetscSFSetGraph() or PetscSFSetGraphWithPattern() on argument %d \"%s\" before %s()", (arg), #sf, PETSC_FUNCTION_NAME);
1995fce210SBarry Smith   #else
209371c9d4SSatish Balay     #define PetscSFCheckGraphSet(sf, arg) \
219371c9d4SSatish Balay       do { \
229371c9d4SSatish Balay       } while (0)
2395fce210SBarry Smith   #endif
242abc8c78SJacob Faibussowitsch #endif
2595fce210SBarry Smith 
264c8fdceaSLisandro Dalcin const char *const PetscSFDuplicateOptions[]     = {"CONFONLY", "RANKS", "GRAPH", "PetscSFDuplicateOption", "PETSCSF_DUPLICATE_", NULL};
27*1f40158dSVaclav Hapla const char *const PetscSFConcatenateRootModes[] = {"local", "shared", "global", "PetscSFConcatenateRootMode", "PETSCSF_CONCATENATE_ROOTMODE_", NULL};
2895fce210SBarry Smith 
298af6ec1cSBarry Smith /*@
3095fce210SBarry Smith    PetscSFCreate - create a star forest communication context
3195fce210SBarry Smith 
32d083f849SBarry Smith    Collective
3395fce210SBarry Smith 
344165533cSJose E. Roman    Input Parameter:
3595fce210SBarry Smith .  comm - communicator on which the star forest will operate
3695fce210SBarry Smith 
374165533cSJose E. Roman    Output Parameter:
3895fce210SBarry Smith .  sf - new star forest context
3995fce210SBarry Smith 
40dd5b3ca6SJunchao Zhang    Options Database Keys:
41cab54364SBarry Smith .  -sf_type type - value of type may be
42cab54364SBarry Smith .vb
43cab54364SBarry Smith     basic     -Use MPI persistent Isend/Irecv for communication (Default)
44cab54364SBarry Smith     window    -Use MPI-3 one-sided window for communication
45cab54364SBarry Smith     neighbor  -Use MPI-3 neighborhood collectives for communication
46cab54364SBarry Smith .ve
47dd5b3ca6SJunchao Zhang 
4895fce210SBarry Smith    Level: intermediate
4995fce210SBarry Smith 
50cab54364SBarry Smith    Note:
51cab54364SBarry Smith    When one knows the communication graph is one of the predefined graph, such as `MPI_Alltoall()`, `MPI_Allgatherv()`,
52cab54364SBarry Smith    `MPI_Gatherv()`, one can create a `PetscSF` and then set its graph with `PetscSFSetGraphWithPattern()`. These special
53cab54364SBarry Smith    `SF`s are optimized and they have better performance than general `SF`s.
54dd5b3ca6SJunchao Zhang 
55cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFSetGraph()`, `PetscSFSetGraphWithPattern()`, `PetscSFDestroy()`
5695fce210SBarry Smith @*/
57d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFCreate(MPI_Comm comm, PetscSF *sf)
58d71ae5a4SJacob Faibussowitsch {
5995fce210SBarry Smith   PetscSF b;
6095fce210SBarry Smith 
6195fce210SBarry Smith   PetscFunctionBegin;
6295fce210SBarry Smith   PetscValidPointer(sf, 2);
639566063dSJacob Faibussowitsch   PetscCall(PetscSFInitializePackage());
6495fce210SBarry Smith 
659566063dSJacob Faibussowitsch   PetscCall(PetscHeaderCreate(b, PETSCSF_CLASSID, "PetscSF", "Star Forest", "PetscSF", comm, PetscSFDestroy, PetscSFView));
6695fce210SBarry Smith 
6795fce210SBarry Smith   b->nroots    = -1;
6895fce210SBarry Smith   b->nleaves   = -1;
6929046d53SLisandro Dalcin   b->minleaf   = PETSC_MAX_INT;
7029046d53SLisandro Dalcin   b->maxleaf   = PETSC_MIN_INT;
7195fce210SBarry Smith   b->nranks    = -1;
7295fce210SBarry Smith   b->rankorder = PETSC_TRUE;
7395fce210SBarry Smith   b->ingroup   = MPI_GROUP_NULL;
7495fce210SBarry Smith   b->outgroup  = MPI_GROUP_NULL;
7595fce210SBarry Smith   b->graphset  = PETSC_FALSE;
7620c24465SJunchao Zhang #if defined(PETSC_HAVE_DEVICE)
7720c24465SJunchao Zhang   b->use_gpu_aware_mpi    = use_gpu_aware_mpi;
7820c24465SJunchao Zhang   b->use_stream_aware_mpi = PETSC_FALSE;
7971438e86SJunchao Zhang   b->unknown_input_stream = PETSC_FALSE;
8027f636e8SJunchao Zhang   #if defined(PETSC_HAVE_KOKKOS) /* Prefer kokkos over cuda*/
8120c24465SJunchao Zhang   b->backend = PETSCSF_BACKEND_KOKKOS;
8227f636e8SJunchao Zhang   #elif defined(PETSC_HAVE_CUDA)
8327f636e8SJunchao Zhang   b->backend = PETSCSF_BACKEND_CUDA;
8459af0bd3SScott Kruger   #elif defined(PETSC_HAVE_HIP)
8559af0bd3SScott Kruger   b->backend = PETSCSF_BACKEND_HIP;
8620c24465SJunchao Zhang   #endif
8771438e86SJunchao Zhang 
8871438e86SJunchao Zhang   #if defined(PETSC_HAVE_NVSHMEM)
8971438e86SJunchao Zhang   b->use_nvshmem     = PETSC_FALSE; /* Default is not to try NVSHMEM */
9071438e86SJunchao Zhang   b->use_nvshmem_get = PETSC_FALSE; /* Default is to use nvshmem_put based protocol */
919566063dSJacob Faibussowitsch   PetscCall(PetscOptionsGetBool(NULL, NULL, "-use_nvshmem", &b->use_nvshmem, NULL));
929566063dSJacob Faibussowitsch   PetscCall(PetscOptionsGetBool(NULL, NULL, "-use_nvshmem_get", &b->use_nvshmem_get, NULL));
9371438e86SJunchao Zhang   #endif
9420c24465SJunchao Zhang #endif
9560c22052SBarry Smith   b->vscat.from_n = -1;
9660c22052SBarry Smith   b->vscat.to_n   = -1;
9760c22052SBarry Smith   b->vscat.unit   = MPIU_SCALAR;
9895fce210SBarry Smith   *sf             = b;
9995fce210SBarry Smith   PetscFunctionReturn(0);
10095fce210SBarry Smith }
10195fce210SBarry Smith 
10229046d53SLisandro Dalcin /*@
10395fce210SBarry Smith    PetscSFReset - Reset a star forest so that different sizes or neighbors can be used
10495fce210SBarry Smith 
10595fce210SBarry Smith    Collective
10695fce210SBarry Smith 
1074165533cSJose E. Roman    Input Parameter:
10895fce210SBarry Smith .  sf - star forest
10995fce210SBarry Smith 
11095fce210SBarry Smith    Level: advanced
11195fce210SBarry Smith 
112cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFCreate()`, `PetscSFSetGraph()`, `PetscSFDestroy()`
11395fce210SBarry Smith @*/
114d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFReset(PetscSF sf)
115d71ae5a4SJacob Faibussowitsch {
11695fce210SBarry Smith   PetscFunctionBegin;
11795fce210SBarry Smith   PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1);
118dbbe0bcdSBarry Smith   PetscTryTypeMethod(sf, Reset);
11929046d53SLisandro Dalcin   sf->nroots   = -1;
12029046d53SLisandro Dalcin   sf->nleaves  = -1;
12129046d53SLisandro Dalcin   sf->minleaf  = PETSC_MAX_INT;
12229046d53SLisandro Dalcin   sf->maxleaf  = PETSC_MIN_INT;
12395fce210SBarry Smith   sf->mine     = NULL;
12495fce210SBarry Smith   sf->remote   = NULL;
12529046d53SLisandro Dalcin   sf->graphset = PETSC_FALSE;
1269566063dSJacob Faibussowitsch   PetscCall(PetscFree(sf->mine_alloc));
1279566063dSJacob Faibussowitsch   PetscCall(PetscFree(sf->remote_alloc));
12821c688dcSJed Brown   sf->nranks = -1;
1299566063dSJacob Faibussowitsch   PetscCall(PetscFree4(sf->ranks, sf->roffset, sf->rmine, sf->rremote));
13029046d53SLisandro Dalcin   sf->degreeknown = PETSC_FALSE;
1319566063dSJacob Faibussowitsch   PetscCall(PetscFree(sf->degree));
1329566063dSJacob Faibussowitsch   if (sf->ingroup != MPI_GROUP_NULL) PetscCallMPI(MPI_Group_free(&sf->ingroup));
1339566063dSJacob Faibussowitsch   if (sf->outgroup != MPI_GROUP_NULL) PetscCallMPI(MPI_Group_free(&sf->outgroup));
134013b3241SStefano Zampini   if (sf->multi) sf->multi->multi = NULL;
1359566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf->multi));
1369566063dSJacob Faibussowitsch   PetscCall(PetscLayoutDestroy(&sf->map));
13771438e86SJunchao Zhang 
13871438e86SJunchao Zhang #if defined(PETSC_HAVE_DEVICE)
1399566063dSJacob Faibussowitsch   for (PetscInt i = 0; i < 2; i++) PetscCall(PetscSFFree(sf, PETSC_MEMTYPE_DEVICE, sf->rmine_d[i]));
14071438e86SJunchao Zhang #endif
14171438e86SJunchao Zhang 
14295fce210SBarry Smith   sf->setupcalled = PETSC_FALSE;
14395fce210SBarry Smith   PetscFunctionReturn(0);
14495fce210SBarry Smith }
14595fce210SBarry Smith 
14695fce210SBarry Smith /*@C
147cab54364SBarry Smith    PetscSFSetType - Set the `PetscSF` communication implementation
14895fce210SBarry Smith 
149cab54364SBarry Smith    Collective on sf
15095fce210SBarry Smith 
15195fce210SBarry Smith    Input Parameters:
152cab54364SBarry Smith +  sf - the `PetscSF` context
15395fce210SBarry Smith -  type - a known method
154cab54364SBarry Smith .vb
155cab54364SBarry Smith     PETSCSFWINDOW - MPI-2/3 one-sided
156cab54364SBarry Smith     PETSCSFBASIC - basic implementation using MPI-1 two-sided
157cab54364SBarry Smith .ve
15895fce210SBarry Smith 
15995fce210SBarry Smith    Options Database Key:
160cab54364SBarry Smith .  -sf_type <type> - Sets the method; for example basic or window use -help for a list of available methods (for instance, window, basic, neighbor)
161cab54364SBarry Smith 
162cab54364SBarry Smith   Level: intermediate
16395fce210SBarry Smith 
16495fce210SBarry Smith    Notes:
16595fce210SBarry Smith    See "include/petscsf.h" for available methods (for instance)
16695fce210SBarry Smith 
167db781477SPatrick Sanan .seealso: `PetscSFType`, `PetscSFCreate()`
16895fce210SBarry Smith @*/
169d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFSetType(PetscSF sf, PetscSFType type)
170d71ae5a4SJacob Faibussowitsch {
17195fce210SBarry Smith   PetscBool match;
1725f80ce2aSJacob Faibussowitsch   PetscErrorCode (*r)(PetscSF);
17395fce210SBarry Smith 
17495fce210SBarry Smith   PetscFunctionBegin;
17595fce210SBarry Smith   PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1);
17695fce210SBarry Smith   PetscValidCharPointer(type, 2);
17795fce210SBarry Smith 
1789566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)sf, type, &match));
17995fce210SBarry Smith   if (match) PetscFunctionReturn(0);
18095fce210SBarry Smith 
1819566063dSJacob Faibussowitsch   PetscCall(PetscFunctionListFind(PetscSFList, type, &r));
18228b400f6SJacob Faibussowitsch   PetscCheck(r, PETSC_COMM_SELF, PETSC_ERR_ARG_UNKNOWN_TYPE, "Unable to find requested PetscSF type %s", type);
18329046d53SLisandro Dalcin   /* Destroy the previous PetscSF implementation context */
184dbbe0bcdSBarry Smith   PetscTryTypeMethod(sf, Destroy);
1859566063dSJacob Faibussowitsch   PetscCall(PetscMemzero(sf->ops, sizeof(*sf->ops)));
1869566063dSJacob Faibussowitsch   PetscCall(PetscObjectChangeTypeName((PetscObject)sf, type));
1879566063dSJacob Faibussowitsch   PetscCall((*r)(sf));
18895fce210SBarry Smith   PetscFunctionReturn(0);
18995fce210SBarry Smith }
19095fce210SBarry Smith 
19129046d53SLisandro Dalcin /*@C
192cab54364SBarry Smith   PetscSFGetType - Get the `PetscSF` communication implementation
19329046d53SLisandro Dalcin 
19429046d53SLisandro Dalcin   Not Collective
19529046d53SLisandro Dalcin 
19629046d53SLisandro Dalcin   Input Parameter:
197cab54364SBarry Smith . sf  - the `PetscSF` context
19829046d53SLisandro Dalcin 
19929046d53SLisandro Dalcin   Output Parameter:
200cab54364SBarry Smith . type - the `PetscSF` type name
20129046d53SLisandro Dalcin 
20229046d53SLisandro Dalcin   Level: intermediate
20329046d53SLisandro Dalcin 
204cab54364SBarry Smith .seealso: `PetscSFType`, `PetscSFSetType()`, `PetscSFCreate()`
20529046d53SLisandro Dalcin @*/
206d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFGetType(PetscSF sf, PetscSFType *type)
207d71ae5a4SJacob Faibussowitsch {
20829046d53SLisandro Dalcin   PetscFunctionBegin;
20929046d53SLisandro Dalcin   PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1);
21029046d53SLisandro Dalcin   PetscValidPointer(type, 2);
21129046d53SLisandro Dalcin   *type = ((PetscObject)sf)->type_name;
21229046d53SLisandro Dalcin   PetscFunctionReturn(0);
21329046d53SLisandro Dalcin }
21429046d53SLisandro Dalcin 
2151fb7b255SJunchao Zhang /*@C
21695fce210SBarry Smith    PetscSFDestroy - destroy star forest
21795fce210SBarry Smith 
21895fce210SBarry Smith    Collective
21995fce210SBarry Smith 
2204165533cSJose E. Roman    Input Parameter:
22195fce210SBarry Smith .  sf - address of star forest
22295fce210SBarry Smith 
22395fce210SBarry Smith    Level: intermediate
22495fce210SBarry Smith 
225cab54364SBarry Smith .seealso: `PetscSFType`, `PetscSFCreate()`, `PetscSFReset()`
22695fce210SBarry Smith @*/
227d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFDestroy(PetscSF *sf)
228d71ae5a4SJacob Faibussowitsch {
22995fce210SBarry Smith   PetscFunctionBegin;
23095fce210SBarry Smith   if (!*sf) PetscFunctionReturn(0);
23195fce210SBarry Smith   PetscValidHeaderSpecific((*sf), PETSCSF_CLASSID, 1);
2329371c9d4SSatish Balay   if (--((PetscObject)(*sf))->refct > 0) {
2339371c9d4SSatish Balay     *sf = NULL;
2349371c9d4SSatish Balay     PetscFunctionReturn(0);
2359371c9d4SSatish Balay   }
2369566063dSJacob Faibussowitsch   PetscCall(PetscSFReset(*sf));
237dbbe0bcdSBarry Smith   PetscTryTypeMethod((*sf), Destroy);
2389566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&(*sf)->vscat.lsf));
2399566063dSJacob Faibussowitsch   if ((*sf)->vscat.bs > 1) PetscCallMPI(MPI_Type_free(&(*sf)->vscat.unit));
2409566063dSJacob Faibussowitsch   PetscCall(PetscHeaderDestroy(sf));
24195fce210SBarry Smith   PetscFunctionReturn(0);
24295fce210SBarry Smith }
24395fce210SBarry Smith 
244d71ae5a4SJacob Faibussowitsch static PetscErrorCode PetscSFCheckGraphValid_Private(PetscSF sf)
245d71ae5a4SJacob Faibussowitsch {
246c4e6a40aSLawrence Mitchell   PetscInt           i, nleaves;
247c4e6a40aSLawrence Mitchell   PetscMPIInt        size;
248c4e6a40aSLawrence Mitchell   const PetscInt    *ilocal;
249c4e6a40aSLawrence Mitchell   const PetscSFNode *iremote;
250c4e6a40aSLawrence Mitchell 
251c4e6a40aSLawrence Mitchell   PetscFunctionBegin;
25276bd3646SJed Brown   if (!sf->graphset || !PetscDefined(USE_DEBUG)) PetscFunctionReturn(0);
2539566063dSJacob Faibussowitsch   PetscCall(PetscSFGetGraph(sf, NULL, &nleaves, &ilocal, &iremote));
2549566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)sf), &size));
255c4e6a40aSLawrence Mitchell   for (i = 0; i < nleaves; i++) {
256c4e6a40aSLawrence Mitchell     const PetscInt rank   = iremote[i].rank;
257c4e6a40aSLawrence Mitchell     const PetscInt remote = iremote[i].index;
258c4e6a40aSLawrence Mitchell     const PetscInt leaf   = ilocal ? ilocal[i] : i;
259c9cc58a2SBarry Smith     PetscCheck(rank >= 0 && rank < size, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Provided rank (%" PetscInt_FMT ") for remote %" PetscInt_FMT " is invalid, should be in [0, %d)", rank, i, size);
26008401ef6SPierre Jolivet     PetscCheck(remote >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Provided index (%" PetscInt_FMT ") for remote %" PetscInt_FMT " is invalid, should be >= 0", remote, i);
26108401ef6SPierre Jolivet     PetscCheck(leaf >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Provided location (%" PetscInt_FMT ") for leaf %" PetscInt_FMT " is invalid, should be >= 0", leaf, i);
262c4e6a40aSLawrence Mitchell   }
263c4e6a40aSLawrence Mitchell   PetscFunctionReturn(0);
264c4e6a40aSLawrence Mitchell }
265c4e6a40aSLawrence Mitchell 
26695fce210SBarry Smith /*@
26795fce210SBarry Smith    PetscSFSetUp - set up communication structures
26895fce210SBarry Smith 
26995fce210SBarry Smith    Collective
27095fce210SBarry Smith 
2714165533cSJose E. Roman    Input Parameter:
27295fce210SBarry Smith .  sf - star forest communication object
27395fce210SBarry Smith 
27495fce210SBarry Smith    Level: beginner
27595fce210SBarry Smith 
276cab54364SBarry Smith .seealso: `PetscSFType`, `PetscSFSetFromOptions()`, `PetscSFSetType()`
27795fce210SBarry Smith @*/
278d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFSetUp(PetscSF sf)
279d71ae5a4SJacob Faibussowitsch {
28095fce210SBarry Smith   PetscFunctionBegin;
28129046d53SLisandro Dalcin   PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1);
28229046d53SLisandro Dalcin   PetscSFCheckGraphSet(sf, 1);
28395fce210SBarry Smith   if (sf->setupcalled) PetscFunctionReturn(0);
2849566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(PETSCSF_SetUp, sf, 0, 0, 0));
2859566063dSJacob Faibussowitsch   PetscCall(PetscSFCheckGraphValid_Private(sf));
2869566063dSJacob Faibussowitsch   if (!((PetscObject)sf)->type_name) PetscCall(PetscSFSetType(sf, PETSCSFBASIC)); /* Zero all sf->ops */
287dbbe0bcdSBarry Smith   PetscTryTypeMethod(sf, SetUp);
28820c24465SJunchao Zhang #if defined(PETSC_HAVE_CUDA)
28920c24465SJunchao Zhang   if (sf->backend == PETSCSF_BACKEND_CUDA) {
29071438e86SJunchao Zhang     sf->ops->Malloc = PetscSFMalloc_CUDA;
29171438e86SJunchao Zhang     sf->ops->Free   = PetscSFFree_CUDA;
29220c24465SJunchao Zhang   }
29320c24465SJunchao Zhang #endif
29459af0bd3SScott Kruger #if defined(PETSC_HAVE_HIP)
29559af0bd3SScott Kruger   if (sf->backend == PETSCSF_BACKEND_HIP) {
29659af0bd3SScott Kruger     sf->ops->Malloc = PetscSFMalloc_HIP;
29759af0bd3SScott Kruger     sf->ops->Free   = PetscSFFree_HIP;
29859af0bd3SScott Kruger   }
29959af0bd3SScott Kruger #endif
30020c24465SJunchao Zhang 
30159af0bd3SScott Kruger #
30220c24465SJunchao Zhang #if defined(PETSC_HAVE_KOKKOS)
30320c24465SJunchao Zhang   if (sf->backend == PETSCSF_BACKEND_KOKKOS) {
30420c24465SJunchao Zhang     sf->ops->Malloc = PetscSFMalloc_Kokkos;
30520c24465SJunchao Zhang     sf->ops->Free   = PetscSFFree_Kokkos;
30620c24465SJunchao Zhang   }
30720c24465SJunchao Zhang #endif
3089566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(PETSCSF_SetUp, sf, 0, 0, 0));
30995fce210SBarry Smith   sf->setupcalled = PETSC_TRUE;
31095fce210SBarry Smith   PetscFunctionReturn(0);
31195fce210SBarry Smith }
31295fce210SBarry Smith 
3138af6ec1cSBarry Smith /*@
314cab54364SBarry Smith    PetscSFSetFromOptions - set `PetscSF` options using the options database
31595fce210SBarry Smith 
31695fce210SBarry Smith    Logically Collective
31795fce210SBarry Smith 
3184165533cSJose E. Roman    Input Parameter:
31995fce210SBarry Smith .  sf - star forest
32095fce210SBarry Smith 
32195fce210SBarry Smith    Options Database Keys:
32260263706SJed Brown +  -sf_type               - implementation type, see PetscSFSetType()
32351ccb202SJunchao Zhang .  -sf_rank_order         - sort composite points for gathers and scatters in rank order, gathers are non-deterministic otherwise
324b85e67b7SJunchao Zhang .  -sf_use_default_stream - Assume callers of SF computed the input root/leafdata with the default cuda stream. SF will also
325c2a741eeSJunchao Zhang                             use the default stream to process data. Therefore, no stream synchronization is needed between SF and its caller (default: true).
326c06a8e02SRichard Tran Mills                             If true, this option only works with -use_gpu_aware_mpi 1.
32720c24465SJunchao Zhang .  -sf_use_stream_aware_mpi  - Assume the underlying MPI is cuda-stream aware and SF won't sync streams for send/recv buffers passed to MPI (default: false).
328c06a8e02SRichard Tran Mills                                If true, this option only works with -use_gpu_aware_mpi 1.
32995fce210SBarry Smith 
33059af0bd3SScott Kruger -  -sf_backend cuda | hip | kokkos -Select the device backend SF uses. Currently SF has these backends: cuda, hip and Kokkos.
33159af0bd3SScott Kruger                               On CUDA (HIP) devices, one can choose cuda (hip) or kokkos with the default being kokkos. On other devices,
33220c24465SJunchao Zhang                               the only available is kokkos.
33320c24465SJunchao Zhang 
33495fce210SBarry Smith    Level: intermediate
335cab54364SBarry Smith 
336cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFCreate()`, `PetscSFSetType()`
33795fce210SBarry Smith @*/
338d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFSetFromOptions(PetscSF sf)
339d71ae5a4SJacob Faibussowitsch {
34095fce210SBarry Smith   PetscSFType deft;
34195fce210SBarry Smith   char        type[256];
34295fce210SBarry Smith   PetscBool   flg;
34395fce210SBarry Smith 
34495fce210SBarry Smith   PetscFunctionBegin;
34595fce210SBarry Smith   PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1);
346d0609cedSBarry Smith   PetscObjectOptionsBegin((PetscObject)sf);
34795fce210SBarry Smith   deft = ((PetscObject)sf)->type_name ? ((PetscObject)sf)->type_name : PETSCSFBASIC;
3489566063dSJacob Faibussowitsch   PetscCall(PetscOptionsFList("-sf_type", "PetscSF implementation type", "PetscSFSetType", PetscSFList, deft, type, sizeof(type), &flg));
3499566063dSJacob Faibussowitsch   PetscCall(PetscSFSetType(sf, flg ? type : deft));
3509566063dSJacob Faibussowitsch   PetscCall(PetscOptionsBool("-sf_rank_order", "sort composite points for gathers and scatters in rank order, gathers are non-deterministic otherwise", "PetscSFSetRankOrder", sf->rankorder, &sf->rankorder, NULL));
3517fd2d3dbSJunchao Zhang #if defined(PETSC_HAVE_DEVICE)
35220c24465SJunchao Zhang   {
35320c24465SJunchao Zhang     char      backendstr[32] = {0};
35459af0bd3SScott Kruger     PetscBool isCuda = PETSC_FALSE, isHip = PETSC_FALSE, isKokkos = PETSC_FALSE, set;
35520c24465SJunchao Zhang     /* Change the defaults set in PetscSFCreate() with command line options */
356d5b43468SJose E. Roman     PetscCall(PetscOptionsBool("-sf_unknown_input_stream", "SF root/leafdata is computed on arbitrary streams unknown to SF", "PetscSFSetFromOptions", sf->unknown_input_stream, &sf->unknown_input_stream, NULL));
3579566063dSJacob Faibussowitsch     PetscCall(PetscOptionsBool("-sf_use_stream_aware_mpi", "Assume the underlying MPI is cuda-stream aware", "PetscSFSetFromOptions", sf->use_stream_aware_mpi, &sf->use_stream_aware_mpi, NULL));
3589566063dSJacob Faibussowitsch     PetscCall(PetscOptionsString("-sf_backend", "Select the device backend SF uses", "PetscSFSetFromOptions", NULL, backendstr, sizeof(backendstr), &set));
3599566063dSJacob Faibussowitsch     PetscCall(PetscStrcasecmp("cuda", backendstr, &isCuda));
3609566063dSJacob Faibussowitsch     PetscCall(PetscStrcasecmp("kokkos", backendstr, &isKokkos));
3619566063dSJacob Faibussowitsch     PetscCall(PetscStrcasecmp("hip", backendstr, &isHip));
36259af0bd3SScott Kruger   #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP)
36320c24465SJunchao Zhang     if (isCuda) sf->backend = PETSCSF_BACKEND_CUDA;
36420c24465SJunchao Zhang     else if (isKokkos) sf->backend = PETSCSF_BACKEND_KOKKOS;
36559af0bd3SScott Kruger     else if (isHip) sf->backend = PETSCSF_BACKEND_HIP;
36628b400f6SJacob Faibussowitsch     else PetscCheck(!set, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "-sf_backend %s is not supported. You may choose cuda, hip or kokkos (if installed)", backendstr);
36720c24465SJunchao Zhang   #elif defined(PETSC_HAVE_KOKKOS)
36808401ef6SPierre Jolivet     PetscCheck(!set || isKokkos, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "-sf_backend %s is not supported. You can only choose kokkos", backendstr);
36920c24465SJunchao Zhang   #endif
37020c24465SJunchao Zhang   }
371c2a741eeSJunchao Zhang #endif
372dbbe0bcdSBarry Smith   PetscTryTypeMethod(sf, SetFromOptions, PetscOptionsObject);
373d0609cedSBarry Smith   PetscOptionsEnd();
37495fce210SBarry Smith   PetscFunctionReturn(0);
37595fce210SBarry Smith }
37695fce210SBarry Smith 
37729046d53SLisandro Dalcin /*@
37895fce210SBarry Smith    PetscSFSetRankOrder - sort multi-points for gathers and scatters by rank order
37995fce210SBarry Smith 
38095fce210SBarry Smith    Logically Collective
38195fce210SBarry Smith 
3824165533cSJose E. Roman    Input Parameters:
38395fce210SBarry Smith +  sf - star forest
384cab54364SBarry Smith -  flg - `PETSC_TRUE` to sort, `PETSC_FALSE` to skip sorting (lower setup cost, but non-deterministic)
38595fce210SBarry Smith 
38695fce210SBarry Smith    Level: advanced
38795fce210SBarry Smith 
388cab54364SBarry Smith .seealso: `PetscSFType`, `PetscSFGatherBegin()`, `PetscSFScatterBegin()`
38995fce210SBarry Smith @*/
390d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFSetRankOrder(PetscSF sf, PetscBool flg)
391d71ae5a4SJacob Faibussowitsch {
39295fce210SBarry Smith   PetscFunctionBegin;
39395fce210SBarry Smith   PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1);
39495fce210SBarry Smith   PetscValidLogicalCollectiveBool(sf, flg, 2);
39528b400f6SJacob Faibussowitsch   PetscCheck(!sf->multi, PetscObjectComm((PetscObject)sf), PETSC_ERR_ARG_WRONGSTATE, "Rank ordering must be set before first call to PetscSFGatherBegin() or PetscSFScatterBegin()");
39695fce210SBarry Smith   sf->rankorder = flg;
39795fce210SBarry Smith   PetscFunctionReturn(0);
39895fce210SBarry Smith }
39995fce210SBarry Smith 
4008dbb0df6SBarry Smith /*@C
40195fce210SBarry Smith    PetscSFSetGraph - Set a parallel star forest
40295fce210SBarry Smith 
40395fce210SBarry Smith    Collective
40495fce210SBarry Smith 
4054165533cSJose E. Roman    Input Parameters:
40695fce210SBarry Smith +  sf - star forest
40795fce210SBarry Smith .  nroots - number of root vertices on the current process (these are possible targets for other process to attach leaves)
40895fce210SBarry Smith .  nleaves - number of leaf vertices on the current process, each of these references a root on any process
409c4e6a40aSLawrence Mitchell .  ilocal - locations of leaves in leafdata buffers, pass NULL for contiguous storage (locations must be >= 0, enforced
410c4e6a40aSLawrence Mitchell during setup in debug mode)
41195fce210SBarry Smith .  localmode - copy mode for ilocal
412c4e6a40aSLawrence Mitchell .  iremote - remote locations of root vertices for each leaf on the current process (locations must be >= 0, enforced
413c4e6a40aSLawrence Mitchell during setup in debug mode)
41495fce210SBarry Smith -  remotemode - copy mode for iremote
41595fce210SBarry Smith 
41695fce210SBarry Smith    Level: intermediate
41795fce210SBarry Smith 
41895452b02SPatrick Sanan    Notes:
419db2b9530SVaclav Hapla    Leaf indices in ilocal must be unique, otherwise an error occurs.
42038ab3f8aSBarry Smith 
421db2b9530SVaclav Hapla    Input arrays ilocal and iremote follow the PetscCopyMode semantics.
422cab54364SBarry Smith    In particular, if localmode/remotemode is `PETSC_OWN_POINTER` or `PETSC_USE_POINTER`,
423db2b9530SVaclav Hapla    PETSc might modify the respective array;
424cab54364SBarry Smith    if `PETSC_USE_POINTER`, the user must delete the array after PetscSFDestroy().
425cab54364SBarry Smith    Only if `PETSC_COPY_VALUES` is used, the respective array is guaranteed to stay intact and a const array can be passed (but a cast to non-const is needed).
426db2b9530SVaclav Hapla 
427cab54364SBarry Smith    Fortran Note:
428db2b9530SVaclav Hapla    In Fortran you must use PETSC_COPY_VALUES for localmode and remotemode.
429c4e6a40aSLawrence Mitchell 
430cab54364SBarry Smith    Developer Note:
431db2b9530SVaclav Hapla    We sort leaves to check for duplicates and contiguousness and to find minleaf/maxleaf.
432db2b9530SVaclav Hapla    This also allows to compare leaf sets of two SFs easily.
43372bf8598SVaclav Hapla 
434cab54364SBarry Smith .seealso: `PetscSFType`, `PetscSFCreate()`, `PetscSFView()`, `PetscSFGetGraph()`
43595fce210SBarry Smith @*/
436d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFSetGraph(PetscSF sf, PetscInt nroots, PetscInt nleaves, PetscInt *ilocal, PetscCopyMode localmode, PetscSFNode *iremote, PetscCopyMode remotemode)
437d71ae5a4SJacob Faibussowitsch {
438db2b9530SVaclav Hapla   PetscBool unique, contiguous;
43995fce210SBarry Smith 
44095fce210SBarry Smith   PetscFunctionBegin;
44195fce210SBarry Smith   PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1);
44229046d53SLisandro Dalcin   if (nleaves > 0 && ilocal) PetscValidIntPointer(ilocal, 4);
44329046d53SLisandro Dalcin   if (nleaves > 0) PetscValidPointer(iremote, 6);
44408401ef6SPierre Jolivet   PetscCheck(nroots >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "nroots %" PetscInt_FMT ", cannot be negative", nroots);
44508401ef6SPierre Jolivet   PetscCheck(nleaves >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "nleaves %" PetscInt_FMT ", cannot be negative", nleaves);
4468da24d32SBarry Smith   /* enums may be handled as unsigned by some compilers, NVHPC for example, the int cast
4478da24d32SBarry Smith    * below is to prevent NVHPC from warning about meaningless comparison of unsigned with zero */
4488da24d32SBarry Smith   PetscCheck((int)localmode >= PETSC_COPY_VALUES && localmode <= PETSC_USE_POINTER, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Wrong localmode %d", localmode);
4498da24d32SBarry Smith   PetscCheck((int)remotemode >= PETSC_COPY_VALUES && remotemode <= PETSC_USE_POINTER, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Wrong remotemode %d", remotemode);
45029046d53SLisandro Dalcin 
4512a67d2daSStefano Zampini   if (sf->nroots >= 0) { /* Reset only if graph already set */
4529566063dSJacob Faibussowitsch     PetscCall(PetscSFReset(sf));
4532a67d2daSStefano Zampini   }
4542a67d2daSStefano Zampini 
4559566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(PETSCSF_SetGraph, sf, 0, 0, 0));
45629046d53SLisandro Dalcin 
45795fce210SBarry Smith   sf->nroots  = nroots;
45895fce210SBarry Smith   sf->nleaves = nleaves;
45929046d53SLisandro Dalcin 
460db2b9530SVaclav Hapla   if (localmode == PETSC_COPY_VALUES && ilocal) {
461db2b9530SVaclav Hapla     PetscInt *tlocal = NULL;
462db2b9530SVaclav Hapla 
4639566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nleaves, &tlocal));
4649566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(tlocal, ilocal, nleaves));
465db2b9530SVaclav Hapla     ilocal = tlocal;
466db2b9530SVaclav Hapla   }
467db2b9530SVaclav Hapla   if (remotemode == PETSC_COPY_VALUES) {
468db2b9530SVaclav Hapla     PetscSFNode *tremote = NULL;
469db2b9530SVaclav Hapla 
4709566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nleaves, &tremote));
4719566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(tremote, iremote, nleaves));
472db2b9530SVaclav Hapla     iremote = tremote;
473db2b9530SVaclav Hapla   }
474db2b9530SVaclav Hapla 
47529046d53SLisandro Dalcin   if (nleaves && ilocal) {
476db2b9530SVaclav Hapla     PetscSFNode work;
477db2b9530SVaclav Hapla 
4789566063dSJacob Faibussowitsch     PetscCall(PetscSortIntWithDataArray(nleaves, ilocal, iremote, sizeof(PetscSFNode), &work));
4799566063dSJacob Faibussowitsch     PetscCall(PetscSortedCheckDupsInt(nleaves, ilocal, &unique));
480db2b9530SVaclav Hapla     unique = PetscNot(unique);
481db2b9530SVaclav Hapla     PetscCheck(sf->allow_multi_leaves || unique, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Input ilocal has duplicate entries which is not allowed for this PetscSF");
482db2b9530SVaclav Hapla     sf->minleaf = ilocal[0];
483db2b9530SVaclav Hapla     sf->maxleaf = ilocal[nleaves - 1];
484db2b9530SVaclav Hapla     contiguous  = (PetscBool)(unique && ilocal[0] == 0 && ilocal[nleaves - 1] == nleaves - 1);
48529046d53SLisandro Dalcin   } else {
48629046d53SLisandro Dalcin     sf->minleaf = 0;
48729046d53SLisandro Dalcin     sf->maxleaf = nleaves - 1;
488db2b9530SVaclav Hapla     unique      = PETSC_TRUE;
489db2b9530SVaclav Hapla     contiguous  = PETSC_TRUE;
49029046d53SLisandro Dalcin   }
49129046d53SLisandro Dalcin 
492db2b9530SVaclav Hapla   if (contiguous) {
493db2b9530SVaclav Hapla     if (localmode == PETSC_USE_POINTER) {
494db2b9530SVaclav Hapla       ilocal = NULL;
495db2b9530SVaclav Hapla     } else {
4969566063dSJacob Faibussowitsch       PetscCall(PetscFree(ilocal));
497db2b9530SVaclav Hapla     }
498db2b9530SVaclav Hapla   }
499db2b9530SVaclav Hapla   sf->mine = ilocal;
500db2b9530SVaclav Hapla   if (localmode == PETSC_USE_POINTER) {
50129046d53SLisandro Dalcin     sf->mine_alloc = NULL;
502db2b9530SVaclav Hapla   } else {
503db2b9530SVaclav Hapla     sf->mine_alloc = ilocal;
50495fce210SBarry Smith   }
505db2b9530SVaclav Hapla   sf->remote = iremote;
506db2b9530SVaclav Hapla   if (remotemode == PETSC_USE_POINTER) {
50729046d53SLisandro Dalcin     sf->remote_alloc = NULL;
508db2b9530SVaclav Hapla   } else {
509db2b9530SVaclav Hapla     sf->remote_alloc = iremote;
51095fce210SBarry Smith   }
5119566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(PETSCSF_SetGraph, sf, 0, 0, 0));
51229046d53SLisandro Dalcin   sf->graphset = PETSC_TRUE;
51395fce210SBarry Smith   PetscFunctionReturn(0);
51495fce210SBarry Smith }
51595fce210SBarry Smith 
51629046d53SLisandro Dalcin /*@
517cab54364SBarry Smith   PetscSFSetGraphWithPattern - Sets the graph of a `PetscSF` with a specific pattern
518dd5b3ca6SJunchao Zhang 
519dd5b3ca6SJunchao Zhang   Collective
520dd5b3ca6SJunchao Zhang 
521dd5b3ca6SJunchao Zhang   Input Parameters:
522cab54364SBarry Smith + sf      - The `PetscSF`
523cab54364SBarry Smith . map     - Layout of roots over all processes (insignificant when pattern is `PETSCSF_PATTERN_ALLTOALL`)
524cab54364SBarry Smith - pattern - One of `PETSCSF_PATTERN_ALLGATHER`, `PETSCSF_PATTERN_GATHER`, `PETSCSF_PATTERN_ALLTOALL`
525cab54364SBarry Smith 
526cab54364SBarry Smith   Level: intermediate
527dd5b3ca6SJunchao Zhang 
528dd5b3ca6SJunchao Zhang   Notes:
529cab54364SBarry Smith   It is easier to explain `PetscSFPattern` using vectors. Suppose we have an MPI vector x and its layout is map.
530dd5b3ca6SJunchao Zhang   n and N are local and global sizes of x respectively.
531dd5b3ca6SJunchao Zhang 
532cab54364SBarry Smith   With `PETSCSF_PATTERN_ALLGATHER`, the routine creates a graph that if one does Bcast on it, it will copy x to
533dd5b3ca6SJunchao Zhang   sequential vectors y on all ranks.
534dd5b3ca6SJunchao Zhang 
535cab54364SBarry Smith   With `PETSCSF_PATTERN_GATHER`, the routine creates a graph that if one does Bcast on it, it will copy x to a
536dd5b3ca6SJunchao Zhang   sequential vector y on rank 0.
537dd5b3ca6SJunchao Zhang 
538dd5b3ca6SJunchao Zhang   In above cases, entries of x are roots and entries of y are leaves.
539dd5b3ca6SJunchao Zhang 
540cab54364SBarry Smith   With `PETSCSF_PATTERN_ALLTOALL`, map is insignificant. Suppose NP is size of sf's communicator. The routine
541dd5b3ca6SJunchao Zhang   creates a graph that every rank has NP leaves and NP roots. On rank i, its leaf j is connected to root i
542cab54364SBarry Smith   of rank j. Here 0 <=i,j<NP. It is a kind of `MPI_Alltoall()` with sendcount/recvcount being 1. Note that it does
543dd5b3ca6SJunchao Zhang   not mean one can not send multiple items. One just needs to create a new MPI datatype for the mulptiple data
544cab54364SBarry Smith   items with `MPI_Type_contiguous` and use that as the <unit> argument in SF routines.
545dd5b3ca6SJunchao Zhang 
546dd5b3ca6SJunchao Zhang   In this case, roots and leaves are symmetric.
547dd5b3ca6SJunchao Zhang 
548cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFCreate()`, `PetscSFView()`, `PetscSFGetGraph()`
549dd5b3ca6SJunchao Zhang  @*/
550d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFSetGraphWithPattern(PetscSF sf, PetscLayout map, PetscSFPattern pattern)
551d71ae5a4SJacob Faibussowitsch {
552dd5b3ca6SJunchao Zhang   MPI_Comm    comm;
553dd5b3ca6SJunchao Zhang   PetscInt    n, N, res[2];
554dd5b3ca6SJunchao Zhang   PetscMPIInt rank, size;
555dd5b3ca6SJunchao Zhang   PetscSFType type;
556dd5b3ca6SJunchao Zhang 
557dd5b3ca6SJunchao Zhang   PetscFunctionBegin;
5582abc8c78SJacob Faibussowitsch   PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1);
5592abc8c78SJacob Faibussowitsch   if (pattern != PETSCSF_PATTERN_ALLTOALL) PetscValidPointer(map, 2);
5609566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)sf, &comm));
5612c71b3e2SJacob Faibussowitsch   PetscCheck(pattern >= PETSCSF_PATTERN_ALLGATHER && pattern <= PETSCSF_PATTERN_ALLTOALL, comm, PETSC_ERR_ARG_OUTOFRANGE, "Unsupported PetscSFPattern %d", pattern);
5629566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
5639566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
564dd5b3ca6SJunchao Zhang 
565dd5b3ca6SJunchao Zhang   if (pattern == PETSCSF_PATTERN_ALLTOALL) {
566dd5b3ca6SJunchao Zhang     type = PETSCSFALLTOALL;
5679566063dSJacob Faibussowitsch     PetscCall(PetscLayoutCreate(comm, &sf->map));
5689566063dSJacob Faibussowitsch     PetscCall(PetscLayoutSetLocalSize(sf->map, size));
5699566063dSJacob Faibussowitsch     PetscCall(PetscLayoutSetSize(sf->map, ((PetscInt)size) * size));
5709566063dSJacob Faibussowitsch     PetscCall(PetscLayoutSetUp(sf->map));
571dd5b3ca6SJunchao Zhang   } else {
5729566063dSJacob Faibussowitsch     PetscCall(PetscLayoutGetLocalSize(map, &n));
5739566063dSJacob Faibussowitsch     PetscCall(PetscLayoutGetSize(map, &N));
574dd5b3ca6SJunchao Zhang     res[0] = n;
575dd5b3ca6SJunchao Zhang     res[1] = -n;
576dd5b3ca6SJunchao Zhang     /* Check if n are same over all ranks so that we can optimize it */
5771c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(MPI_IN_PLACE, res, 2, MPIU_INT, MPI_MAX, comm));
578dd5b3ca6SJunchao Zhang     if (res[0] == -res[1]) { /* same n */
579dd5b3ca6SJunchao Zhang       type = (pattern == PETSCSF_PATTERN_ALLGATHER) ? PETSCSFALLGATHER : PETSCSFGATHER;
580dd5b3ca6SJunchao Zhang     } else {
581dd5b3ca6SJunchao Zhang       type = (pattern == PETSCSF_PATTERN_ALLGATHER) ? PETSCSFALLGATHERV : PETSCSFGATHERV;
582dd5b3ca6SJunchao Zhang     }
5839566063dSJacob Faibussowitsch     PetscCall(PetscLayoutReference(map, &sf->map));
584dd5b3ca6SJunchao Zhang   }
5859566063dSJacob Faibussowitsch   PetscCall(PetscSFSetType(sf, type));
586dd5b3ca6SJunchao Zhang 
587dd5b3ca6SJunchao Zhang   sf->pattern = pattern;
588dd5b3ca6SJunchao Zhang   sf->mine    = NULL; /* Contiguous */
589dd5b3ca6SJunchao Zhang 
590dd5b3ca6SJunchao Zhang   /* Set nleaves, nroots here in case user calls PetscSFGetGraph, which is legal to call even before PetscSFSetUp is called.
591dd5b3ca6SJunchao Zhang      Also set other easy stuff.
592dd5b3ca6SJunchao Zhang    */
593dd5b3ca6SJunchao Zhang   if (pattern == PETSCSF_PATTERN_ALLGATHER) {
594dd5b3ca6SJunchao Zhang     sf->nleaves = N;
595dd5b3ca6SJunchao Zhang     sf->nroots  = n;
596dd5b3ca6SJunchao Zhang     sf->nranks  = size;
597dd5b3ca6SJunchao Zhang     sf->minleaf = 0;
598dd5b3ca6SJunchao Zhang     sf->maxleaf = N - 1;
599dd5b3ca6SJunchao Zhang   } else if (pattern == PETSCSF_PATTERN_GATHER) {
600dd5b3ca6SJunchao Zhang     sf->nleaves = rank ? 0 : N;
601dd5b3ca6SJunchao Zhang     sf->nroots  = n;
602dd5b3ca6SJunchao Zhang     sf->nranks  = rank ? 0 : size;
603dd5b3ca6SJunchao Zhang     sf->minleaf = 0;
604dd5b3ca6SJunchao Zhang     sf->maxleaf = rank ? -1 : N - 1;
605dd5b3ca6SJunchao Zhang   } else if (pattern == PETSCSF_PATTERN_ALLTOALL) {
606dd5b3ca6SJunchao Zhang     sf->nleaves = size;
607dd5b3ca6SJunchao Zhang     sf->nroots  = size;
608dd5b3ca6SJunchao Zhang     sf->nranks  = size;
609dd5b3ca6SJunchao Zhang     sf->minleaf = 0;
610dd5b3ca6SJunchao Zhang     sf->maxleaf = size - 1;
611dd5b3ca6SJunchao Zhang   }
612dd5b3ca6SJunchao Zhang   sf->ndranks  = 0; /* We do not need to separate out distinguished ranks for patterned graphs to improve communication performance */
613dd5b3ca6SJunchao Zhang   sf->graphset = PETSC_TRUE;
614dd5b3ca6SJunchao Zhang   PetscFunctionReturn(0);
615dd5b3ca6SJunchao Zhang }
616dd5b3ca6SJunchao Zhang 
617dd5b3ca6SJunchao Zhang /*@
618cab54364SBarry Smith    PetscSFCreateInverseSF - given a `PetscSF` in which all vertices have degree 1, creates the inverse map
61995fce210SBarry Smith 
62095fce210SBarry Smith    Collective
62195fce210SBarry Smith 
6224165533cSJose E. Roman    Input Parameter:
62395fce210SBarry Smith .  sf - star forest to invert
62495fce210SBarry Smith 
6254165533cSJose E. Roman    Output Parameter:
62695fce210SBarry Smith .  isf - inverse of sf
6274165533cSJose E. Roman 
62895fce210SBarry Smith    Level: advanced
62995fce210SBarry Smith 
63095fce210SBarry Smith    Notes:
63195fce210SBarry Smith    All roots must have degree 1.
63295fce210SBarry Smith 
63395fce210SBarry Smith    The local space may be a permutation, but cannot be sparse.
63495fce210SBarry Smith 
635cab54364SBarry Smith .seealso: `PetscSFType`, `PetscSFSetGraph()`
63695fce210SBarry Smith @*/
637d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFCreateInverseSF(PetscSF sf, PetscSF *isf)
638d71ae5a4SJacob Faibussowitsch {
63995fce210SBarry Smith   PetscMPIInt     rank;
64095fce210SBarry Smith   PetscInt        i, nroots, nleaves, maxlocal, count, *newilocal;
64195fce210SBarry Smith   const PetscInt *ilocal;
64295fce210SBarry Smith   PetscSFNode    *roots, *leaves;
64395fce210SBarry Smith 
64495fce210SBarry Smith   PetscFunctionBegin;
64529046d53SLisandro Dalcin   PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1);
64629046d53SLisandro Dalcin   PetscSFCheckGraphSet(sf, 1);
64729046d53SLisandro Dalcin   PetscValidPointer(isf, 2);
64829046d53SLisandro Dalcin 
6499566063dSJacob Faibussowitsch   PetscCall(PetscSFGetGraph(sf, &nroots, &nleaves, &ilocal, NULL));
65029046d53SLisandro Dalcin   maxlocal = sf->maxleaf + 1; /* TODO: We should use PetscSFGetLeafRange() */
65129046d53SLisandro Dalcin 
6529566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)sf), &rank));
6539566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(nroots, &roots, maxlocal, &leaves));
654ae9aee6dSMatthew G. Knepley   for (i = 0; i < maxlocal; i++) {
65595fce210SBarry Smith     leaves[i].rank  = rank;
65695fce210SBarry Smith     leaves[i].index = i;
65795fce210SBarry Smith   }
65895fce210SBarry Smith   for (i = 0; i < nroots; i++) {
65995fce210SBarry Smith     roots[i].rank  = -1;
66095fce210SBarry Smith     roots[i].index = -1;
66195fce210SBarry Smith   }
6629566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceBegin(sf, MPIU_2INT, leaves, roots, MPI_REPLACE));
6639566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceEnd(sf, MPIU_2INT, leaves, roots, MPI_REPLACE));
66495fce210SBarry Smith 
66595fce210SBarry Smith   /* Check whether our leaves are sparse */
6669371c9d4SSatish Balay   for (i = 0, count = 0; i < nroots; i++)
6679371c9d4SSatish Balay     if (roots[i].rank >= 0) count++;
66895fce210SBarry Smith   if (count == nroots) newilocal = NULL;
6699371c9d4SSatish Balay   else { /* Index for sparse leaves and compact "roots" array (which is to become our leaves). */ PetscCall(PetscMalloc1(count, &newilocal));
67095fce210SBarry Smith     for (i = 0, count = 0; i < nroots; i++) {
67195fce210SBarry Smith       if (roots[i].rank >= 0) {
67295fce210SBarry Smith         newilocal[count]   = i;
67395fce210SBarry Smith         roots[count].rank  = roots[i].rank;
67495fce210SBarry Smith         roots[count].index = roots[i].index;
67595fce210SBarry Smith         count++;
67695fce210SBarry Smith       }
67795fce210SBarry Smith     }
67895fce210SBarry Smith   }
67995fce210SBarry Smith 
6809566063dSJacob Faibussowitsch   PetscCall(PetscSFDuplicate(sf, PETSCSF_DUPLICATE_CONFONLY, isf));
6819566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(*isf, maxlocal, count, newilocal, PETSC_OWN_POINTER, roots, PETSC_COPY_VALUES));
6829566063dSJacob Faibussowitsch   PetscCall(PetscFree2(roots, leaves));
68395fce210SBarry Smith   PetscFunctionReturn(0);
68495fce210SBarry Smith }
68595fce210SBarry Smith 
68695fce210SBarry Smith /*@
687cab54364SBarry Smith    PetscSFDuplicate - duplicate a `PetscSF`, optionally preserving rank connectivity and graph
68895fce210SBarry Smith 
68995fce210SBarry Smith    Collective
69095fce210SBarry Smith 
6914165533cSJose E. Roman    Input Parameters:
69295fce210SBarry Smith +  sf - communication object to duplicate
693cab54364SBarry Smith -  opt - `PETSCSF_DUPLICATE_CONFONLY`, `PETSCSF_DUPLICATE_RANKS`, or `PETSCSF_DUPLICATE_GRAPH` (see `PetscSFDuplicateOption`)
69495fce210SBarry Smith 
6954165533cSJose E. Roman    Output Parameter:
69695fce210SBarry Smith .  newsf - new communication object
69795fce210SBarry Smith 
69895fce210SBarry Smith    Level: beginner
69995fce210SBarry Smith 
700cab54364SBarry Smith .seealso: `PetscSFType`, `PetscSFCreate()`, `PetscSFSetType()`, `PetscSFSetGraph()`
70195fce210SBarry Smith @*/
702d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFDuplicate(PetscSF sf, PetscSFDuplicateOption opt, PetscSF *newsf)
703d71ae5a4SJacob Faibussowitsch {
70429046d53SLisandro Dalcin   PetscSFType  type;
70597929ea7SJunchao Zhang   MPI_Datatype dtype = MPIU_SCALAR;
70695fce210SBarry Smith 
70795fce210SBarry Smith   PetscFunctionBegin;
70829046d53SLisandro Dalcin   PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1);
70929046d53SLisandro Dalcin   PetscValidLogicalCollectiveEnum(sf, opt, 2);
71029046d53SLisandro Dalcin   PetscValidPointer(newsf, 3);
7119566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)sf), newsf));
7129566063dSJacob Faibussowitsch   PetscCall(PetscSFGetType(sf, &type));
7139566063dSJacob Faibussowitsch   if (type) PetscCall(PetscSFSetType(*newsf, type));
71454a24607SJunchao Zhang   (*newsf)->allow_multi_leaves = sf->allow_multi_leaves; /* Dup this flag ealier since PetscSFSetGraph() below checks on this flag */
71595fce210SBarry Smith   if (opt == PETSCSF_DUPLICATE_GRAPH) {
716dd5b3ca6SJunchao Zhang     PetscSFCheckGraphSet(sf, 1);
717dd5b3ca6SJunchao Zhang     if (sf->pattern == PETSCSF_PATTERN_GENERAL) {
71895fce210SBarry Smith       PetscInt           nroots, nleaves;
71995fce210SBarry Smith       const PetscInt    *ilocal;
72095fce210SBarry Smith       const PetscSFNode *iremote;
7219566063dSJacob Faibussowitsch       PetscCall(PetscSFGetGraph(sf, &nroots, &nleaves, &ilocal, &iremote));
7229566063dSJacob Faibussowitsch       PetscCall(PetscSFSetGraph(*newsf, nroots, nleaves, (PetscInt *)ilocal, PETSC_COPY_VALUES, (PetscSFNode *)iremote, PETSC_COPY_VALUES));
723dd5b3ca6SJunchao Zhang     } else {
7249566063dSJacob Faibussowitsch       PetscCall(PetscSFSetGraphWithPattern(*newsf, sf->map, sf->pattern));
725dd5b3ca6SJunchao Zhang     }
72695fce210SBarry Smith   }
72797929ea7SJunchao Zhang   /* Since oldtype is committed, so is newtype, according to MPI */
7289566063dSJacob Faibussowitsch   if (sf->vscat.bs > 1) PetscCallMPI(MPI_Type_dup(sf->vscat.unit, &dtype));
72997929ea7SJunchao Zhang   (*newsf)->vscat.bs     = sf->vscat.bs;
73097929ea7SJunchao Zhang   (*newsf)->vscat.unit   = dtype;
73197929ea7SJunchao Zhang   (*newsf)->vscat.to_n   = sf->vscat.to_n;
73297929ea7SJunchao Zhang   (*newsf)->vscat.from_n = sf->vscat.from_n;
73397929ea7SJunchao Zhang   /* Do not copy lsf. Build it on demand since it is rarely used */
73497929ea7SJunchao Zhang 
73520c24465SJunchao Zhang #if defined(PETSC_HAVE_DEVICE)
73620c24465SJunchao Zhang   (*newsf)->backend              = sf->backend;
73771438e86SJunchao Zhang   (*newsf)->unknown_input_stream = sf->unknown_input_stream;
73820c24465SJunchao Zhang   (*newsf)->use_gpu_aware_mpi    = sf->use_gpu_aware_mpi;
73920c24465SJunchao Zhang   (*newsf)->use_stream_aware_mpi = sf->use_stream_aware_mpi;
74020c24465SJunchao Zhang #endif
741dbbe0bcdSBarry Smith   PetscTryTypeMethod(sf, Duplicate, opt, *newsf);
74220c24465SJunchao Zhang   /* Don't do PetscSFSetUp() since the new sf's graph might have not been set. */
74395fce210SBarry Smith   PetscFunctionReturn(0);
74495fce210SBarry Smith }
74595fce210SBarry Smith 
74695fce210SBarry Smith /*@C
74795fce210SBarry Smith    PetscSFGetGraph - Get the graph specifying a parallel star forest
74895fce210SBarry Smith 
74995fce210SBarry Smith    Not Collective
75095fce210SBarry Smith 
7514165533cSJose E. Roman    Input Parameter:
75295fce210SBarry Smith .  sf - star forest
75395fce210SBarry Smith 
7544165533cSJose E. Roman    Output Parameters:
75595fce210SBarry Smith +  nroots - number of root vertices on the current process (these are possible targets for other process to attach leaves)
75695fce210SBarry Smith .  nleaves - number of leaf vertices on the current process, each of these references a root on any process
757bc6585dcSJunchao Zhang .  ilocal - locations of leaves in leafdata buffers (if returned value is NULL, it means leaves are in contiguous storage)
75895fce210SBarry Smith -  iremote - remote locations of root vertices for each leaf on the current process
75995fce210SBarry Smith 
760cab54364SBarry Smith    Level: intermediate
761cab54364SBarry Smith 
762373e0d91SLisandro Dalcin    Notes:
763373e0d91SLisandro Dalcin      We are not currently requiring that the graph is set, thus returning nroots=-1 if it has not been set yet
764373e0d91SLisandro Dalcin 
765cab54364SBarry Smith      The returned ilocal/iremote might contain values in different order than the input ones in `PetscSFSetGraph()`,
766db2b9530SVaclav Hapla      see its manpage for details.
767db2b9530SVaclav Hapla 
7688dbb0df6SBarry Smith    Fortran Notes:
7698dbb0df6SBarry Smith      The returned iremote array is a copy and must be deallocated after use. Consequently, if you
770cab54364SBarry Smith      want to update the graph, you must call `PetscSFSetGraph()` after modifying the iremote array.
7718dbb0df6SBarry Smith 
7728dbb0df6SBarry Smith      To check for a NULL ilocal use
7738dbb0df6SBarry Smith $      if (loc(ilocal) == loc(PETSC_NULL_INTEGER)) then
774ca797d7aSLawrence Mitchell 
775cab54364SBarry Smith .seealso: `PetscSFType`, `PetscSFCreate()`, `PetscSFView()`, `PetscSFSetGraph()`
77695fce210SBarry Smith @*/
777d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFGetGraph(PetscSF sf, PetscInt *nroots, PetscInt *nleaves, const PetscInt **ilocal, const PetscSFNode **iremote)
778d71ae5a4SJacob Faibussowitsch {
77995fce210SBarry Smith   PetscFunctionBegin;
78095fce210SBarry Smith   PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1);
781b8dee149SJunchao Zhang   if (sf->ops->GetGraph) {
7829566063dSJacob Faibussowitsch     PetscCall((sf->ops->GetGraph)(sf, nroots, nleaves, ilocal, iremote));
783b8dee149SJunchao Zhang   } else {
78495fce210SBarry Smith     if (nroots) *nroots = sf->nroots;
78595fce210SBarry Smith     if (nleaves) *nleaves = sf->nleaves;
78695fce210SBarry Smith     if (ilocal) *ilocal = sf->mine;
78795fce210SBarry Smith     if (iremote) *iremote = sf->remote;
788b8dee149SJunchao Zhang   }
78995fce210SBarry Smith   PetscFunctionReturn(0);
79095fce210SBarry Smith }
79195fce210SBarry Smith 
79229046d53SLisandro Dalcin /*@
79395fce210SBarry Smith    PetscSFGetLeafRange - Get the active leaf ranges
79495fce210SBarry Smith 
79595fce210SBarry Smith    Not Collective
79695fce210SBarry Smith 
7974165533cSJose E. Roman    Input Parameter:
79895fce210SBarry Smith .  sf - star forest
79995fce210SBarry Smith 
8004165533cSJose E. Roman    Output Parameters:
801dd5b3ca6SJunchao Zhang +  minleaf - minimum active leaf on this process. Return 0 if there are no leaves.
802dd5b3ca6SJunchao Zhang -  maxleaf - maximum active leaf on this process. Return -1 if there are no leaves.
80395fce210SBarry Smith 
80495fce210SBarry Smith    Level: developer
80595fce210SBarry Smith 
806cab54364SBarry Smith .seealso: `PetscSFType`, `PetscSFCreate()`, `PetscSFView()`, `PetscSFSetGraph()`, `PetscSFGetGraph()`
80795fce210SBarry Smith @*/
808d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFGetLeafRange(PetscSF sf, PetscInt *minleaf, PetscInt *maxleaf)
809d71ae5a4SJacob Faibussowitsch {
81095fce210SBarry Smith   PetscFunctionBegin;
81195fce210SBarry Smith   PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1);
81229046d53SLisandro Dalcin   PetscSFCheckGraphSet(sf, 1);
81395fce210SBarry Smith   if (minleaf) *minleaf = sf->minleaf;
81495fce210SBarry Smith   if (maxleaf) *maxleaf = sf->maxleaf;
81595fce210SBarry Smith   PetscFunctionReturn(0);
81695fce210SBarry Smith }
81795fce210SBarry Smith 
81895fce210SBarry Smith /*@C
819cab54364SBarry Smith    PetscSFViewFromOptions - View a `PetscSF` based on arguments in the options database
820fe2efc57SMark 
821cab54364SBarry Smith    Collective on A
822fe2efc57SMark 
823fe2efc57SMark    Input Parameters:
824fe2efc57SMark +  A - the star forest
825cab54364SBarry Smith .  obj - Optional object that provides the prefix for the option names
826736c3998SJose E. Roman -  name - command line option
827fe2efc57SMark 
828fe2efc57SMark    Level: intermediate
829cab54364SBarry Smith 
830db781477SPatrick Sanan .seealso: `PetscSF`, `PetscSFView`, `PetscObjectViewFromOptions()`, `PetscSFCreate()`
831fe2efc57SMark @*/
832d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFViewFromOptions(PetscSF A, PetscObject obj, const char name[])
833d71ae5a4SJacob Faibussowitsch {
834fe2efc57SMark   PetscFunctionBegin;
835fe2efc57SMark   PetscValidHeaderSpecific(A, PETSCSF_CLASSID, 1);
8369566063dSJacob Faibussowitsch   PetscCall(PetscObjectViewFromOptions((PetscObject)A, obj, name));
837fe2efc57SMark   PetscFunctionReturn(0);
838fe2efc57SMark }
839fe2efc57SMark 
840fe2efc57SMark /*@C
84195fce210SBarry Smith    PetscSFView - view a star forest
84295fce210SBarry Smith 
84395fce210SBarry Smith    Collective
84495fce210SBarry Smith 
8454165533cSJose E. Roman    Input Parameters:
84695fce210SBarry Smith +  sf - star forest
847cab54364SBarry Smith -  viewer - viewer to display graph, for example `PETSC_VIEWER_STDOUT_WORLD`
84895fce210SBarry Smith 
84995fce210SBarry Smith    Level: beginner
85095fce210SBarry Smith 
851cab54364SBarry Smith .seealso: `PetscSF`, `PetscViewer`, `PetscSFCreate()`, `PetscSFSetGraph()`
85295fce210SBarry Smith @*/
853d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFView(PetscSF sf, PetscViewer viewer)
854d71ae5a4SJacob Faibussowitsch {
85595fce210SBarry Smith   PetscBool         iascii;
85695fce210SBarry Smith   PetscViewerFormat format;
85795fce210SBarry Smith 
85895fce210SBarry Smith   PetscFunctionBegin;
85995fce210SBarry Smith   PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1);
8609566063dSJacob Faibussowitsch   if (!viewer) PetscCall(PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject)sf), &viewer));
86195fce210SBarry Smith   PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2);
86295fce210SBarry Smith   PetscCheckSameComm(sf, 1, viewer, 2);
8639566063dSJacob Faibussowitsch   if (sf->graphset) PetscCall(PetscSFSetUp(sf));
8649566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii));
86553dd6d7dSJunchao Zhang   if (iascii && viewer->format != PETSC_VIEWER_ASCII_MATLAB) {
86695fce210SBarry Smith     PetscMPIInt rank;
86781bfa7aaSJed Brown     PetscInt    ii, i, j;
86895fce210SBarry Smith 
8699566063dSJacob Faibussowitsch     PetscCall(PetscObjectPrintClassNamePrefixType((PetscObject)sf, viewer));
8709566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIPushTab(viewer));
871dd5b3ca6SJunchao Zhang     if (sf->pattern == PETSCSF_PATTERN_GENERAL) {
87280153354SVaclav Hapla       if (!sf->graphset) {
8739566063dSJacob Faibussowitsch         PetscCall(PetscViewerASCIIPrintf(viewer, "PetscSFSetGraph() has not been called yet\n"));
8749566063dSJacob Faibussowitsch         PetscCall(PetscViewerASCIIPopTab(viewer));
87580153354SVaclav Hapla         PetscFunctionReturn(0);
87680153354SVaclav Hapla       }
8779566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)sf), &rank));
8789566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPushSynchronized(viewer));
8799566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Number of roots=%" PetscInt_FMT ", leaves=%" PetscInt_FMT ", remote ranks=%" PetscInt_FMT "\n", rank, sf->nroots, sf->nleaves, sf->nranks));
88048a46eb9SPierre Jolivet       for (i = 0; i < sf->nleaves; i++) PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] %" PetscInt_FMT " <- (%" PetscInt_FMT ",%" PetscInt_FMT ")\n", rank, sf->mine ? sf->mine[i] : i, sf->remote[i].rank, sf->remote[i].index));
8819566063dSJacob Faibussowitsch       PetscCall(PetscViewerFlush(viewer));
8829566063dSJacob Faibussowitsch       PetscCall(PetscViewerGetFormat(viewer, &format));
88395fce210SBarry Smith       if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
88481bfa7aaSJed Brown         PetscMPIInt *tmpranks, *perm;
8859566063dSJacob Faibussowitsch         PetscCall(PetscMalloc2(sf->nranks, &tmpranks, sf->nranks, &perm));
8869566063dSJacob Faibussowitsch         PetscCall(PetscArraycpy(tmpranks, sf->ranks, sf->nranks));
88781bfa7aaSJed Brown         for (i = 0; i < sf->nranks; i++) perm[i] = i;
8889566063dSJacob Faibussowitsch         PetscCall(PetscSortMPIIntWithArray(sf->nranks, tmpranks, perm));
8899566063dSJacob Faibussowitsch         PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Roots referenced by my leaves, by rank\n", rank));
89081bfa7aaSJed Brown         for (ii = 0; ii < sf->nranks; ii++) {
89181bfa7aaSJed Brown           i = perm[ii];
8929566063dSJacob Faibussowitsch           PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] %d: %" PetscInt_FMT " edges\n", rank, sf->ranks[i], sf->roffset[i + 1] - sf->roffset[i]));
89348a46eb9SPierre Jolivet           for (j = sf->roffset[i]; j < sf->roffset[i + 1]; j++) PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d]    %" PetscInt_FMT " <- %" PetscInt_FMT "\n", rank, sf->rmine[j], sf->rremote[j]));
89495fce210SBarry Smith         }
8959566063dSJacob Faibussowitsch         PetscCall(PetscFree2(tmpranks, perm));
89695fce210SBarry Smith       }
8979566063dSJacob Faibussowitsch       PetscCall(PetscViewerFlush(viewer));
8989566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPopSynchronized(viewer));
899dd5b3ca6SJunchao Zhang     }
9009566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIPopTab(viewer));
90195fce210SBarry Smith   }
902dbbe0bcdSBarry Smith   PetscTryTypeMethod(sf, View, viewer);
90395fce210SBarry Smith   PetscFunctionReturn(0);
90495fce210SBarry Smith }
90595fce210SBarry Smith 
90695fce210SBarry Smith /*@C
907dec1416fSJunchao Zhang    PetscSFGetRootRanks - Get root ranks and number of vertices referenced by leaves on this process
90895fce210SBarry Smith 
90995fce210SBarry Smith    Not Collective
91095fce210SBarry Smith 
9114165533cSJose E. Roman    Input Parameter:
91295fce210SBarry Smith .  sf - star forest
91395fce210SBarry Smith 
9144165533cSJose E. Roman    Output Parameters:
91595fce210SBarry Smith +  nranks - number of ranks referenced by local part
91695fce210SBarry Smith .  ranks - array of ranks
91795fce210SBarry Smith .  roffset - offset in rmine/rremote for each rank (length nranks+1)
91895fce210SBarry Smith .  rmine - concatenated array holding local indices referencing each remote rank
91995fce210SBarry Smith -  rremote - concatenated array holding remote indices referenced for each remote rank
92095fce210SBarry Smith 
92195fce210SBarry Smith    Level: developer
92295fce210SBarry Smith 
923cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFGetLeafRanks()`
92495fce210SBarry Smith @*/
925d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFGetRootRanks(PetscSF sf, PetscInt *nranks, const PetscMPIInt **ranks, const PetscInt **roffset, const PetscInt **rmine, const PetscInt **rremote)
926d71ae5a4SJacob Faibussowitsch {
92795fce210SBarry Smith   PetscFunctionBegin;
92895fce210SBarry Smith   PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1);
92928b400f6SJacob Faibussowitsch   PetscCheck(sf->setupcalled, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Must call PetscSFSetUp() before obtaining ranks");
930dec1416fSJunchao Zhang   if (sf->ops->GetRootRanks) {
9319566063dSJacob Faibussowitsch     PetscCall((sf->ops->GetRootRanks)(sf, nranks, ranks, roffset, rmine, rremote));
932dec1416fSJunchao Zhang   } else {
933dec1416fSJunchao Zhang     /* The generic implementation */
93495fce210SBarry Smith     if (nranks) *nranks = sf->nranks;
93595fce210SBarry Smith     if (ranks) *ranks = sf->ranks;
93695fce210SBarry Smith     if (roffset) *roffset = sf->roffset;
93795fce210SBarry Smith     if (rmine) *rmine = sf->rmine;
93895fce210SBarry Smith     if (rremote) *rremote = sf->rremote;
939dec1416fSJunchao Zhang   }
94095fce210SBarry Smith   PetscFunctionReturn(0);
94195fce210SBarry Smith }
94295fce210SBarry Smith 
9438750ddebSJunchao Zhang /*@C
9448750ddebSJunchao Zhang    PetscSFGetLeafRanks - Get leaf ranks referencing roots on this process
9458750ddebSJunchao Zhang 
9468750ddebSJunchao Zhang    Not Collective
9478750ddebSJunchao Zhang 
9484165533cSJose E. Roman    Input Parameter:
9498750ddebSJunchao Zhang .  sf - star forest
9508750ddebSJunchao Zhang 
9514165533cSJose E. Roman    Output Parameters:
9528750ddebSJunchao Zhang +  niranks - number of leaf ranks referencing roots on this process
9538750ddebSJunchao Zhang .  iranks - array of ranks
9548750ddebSJunchao Zhang .  ioffset - offset in irootloc for each rank (length niranks+1)
9558750ddebSJunchao Zhang -  irootloc - concatenated array holding local indices of roots referenced by each leaf rank
9568750ddebSJunchao Zhang 
9578750ddebSJunchao Zhang    Level: developer
9588750ddebSJunchao Zhang 
959cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFGetRootRanks()`
9608750ddebSJunchao Zhang @*/
961d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFGetLeafRanks(PetscSF sf, PetscInt *niranks, const PetscMPIInt **iranks, const PetscInt **ioffset, const PetscInt **irootloc)
962d71ae5a4SJacob Faibussowitsch {
9638750ddebSJunchao Zhang   PetscFunctionBegin;
9648750ddebSJunchao Zhang   PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1);
96528b400f6SJacob Faibussowitsch   PetscCheck(sf->setupcalled, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Must call PetscSFSetUp() before obtaining ranks");
9668750ddebSJunchao Zhang   if (sf->ops->GetLeafRanks) {
9679566063dSJacob Faibussowitsch     PetscCall((sf->ops->GetLeafRanks)(sf, niranks, iranks, ioffset, irootloc));
9688750ddebSJunchao Zhang   } else {
9698750ddebSJunchao Zhang     PetscSFType type;
9709566063dSJacob Faibussowitsch     PetscCall(PetscSFGetType(sf, &type));
97198921bdaSJacob Faibussowitsch     SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "PetscSFGetLeafRanks() is not supported on this StarForest type: %s", type);
9728750ddebSJunchao Zhang   }
9738750ddebSJunchao Zhang   PetscFunctionReturn(0);
9748750ddebSJunchao Zhang }
9758750ddebSJunchao Zhang 
976d71ae5a4SJacob Faibussowitsch static PetscBool InList(PetscMPIInt needle, PetscMPIInt n, const PetscMPIInt *list)
977d71ae5a4SJacob Faibussowitsch {
978b5a8e515SJed Brown   PetscInt i;
979b5a8e515SJed Brown   for (i = 0; i < n; i++) {
980b5a8e515SJed Brown     if (needle == list[i]) return PETSC_TRUE;
981b5a8e515SJed Brown   }
982b5a8e515SJed Brown   return PETSC_FALSE;
983b5a8e515SJed Brown }
984b5a8e515SJed Brown 
98595fce210SBarry Smith /*@C
986cab54364SBarry Smith    PetscSFSetUpRanks - Set up data structures associated with ranks; this is for internal use by `PetscSF` implementations.
98721c688dcSJed Brown 
98821c688dcSJed Brown    Collective
98921c688dcSJed Brown 
9904165533cSJose E. Roman    Input Parameters:
991cab54364SBarry Smith +  sf - `PetscSF` to set up; `PetscSFSetGraph()` must have been called
992cab54364SBarry Smith -  dgroup - `MPI_Group` of ranks to be distinguished (e.g., for self or shared memory exchange)
99321c688dcSJed Brown 
99421c688dcSJed Brown    Level: developer
99521c688dcSJed Brown 
996cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFGetRootRanks()`
99721c688dcSJed Brown @*/
998d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFSetUpRanks(PetscSF sf, MPI_Group dgroup)
999d71ae5a4SJacob Faibussowitsch {
100021c688dcSJed Brown   PetscTable         table;
100121c688dcSJed Brown   PetscTablePosition pos;
1002b5a8e515SJed Brown   PetscMPIInt        size, groupsize, *groupranks;
1003247e8311SStefano Zampini   PetscInt          *rcount, *ranks;
1004247e8311SStefano Zampini   PetscInt           i, irank = -1, orank = -1;
100521c688dcSJed Brown 
100621c688dcSJed Brown   PetscFunctionBegin;
100721c688dcSJed Brown   PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1);
100829046d53SLisandro Dalcin   PetscSFCheckGraphSet(sf, 1);
10099566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)sf), &size));
10109566063dSJacob Faibussowitsch   PetscCall(PetscTableCreate(10, size, &table));
101121c688dcSJed Brown   for (i = 0; i < sf->nleaves; i++) {
101221c688dcSJed Brown     /* Log 1-based rank */
10139566063dSJacob Faibussowitsch     PetscCall(PetscTableAdd(table, sf->remote[i].rank + 1, 1, ADD_VALUES));
101421c688dcSJed Brown   }
10159566063dSJacob Faibussowitsch   PetscCall(PetscTableGetCount(table, &sf->nranks));
10169566063dSJacob Faibussowitsch   PetscCall(PetscMalloc4(sf->nranks, &sf->ranks, sf->nranks + 1, &sf->roffset, sf->nleaves, &sf->rmine, sf->nleaves, &sf->rremote));
10179566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(sf->nranks, &rcount, sf->nranks, &ranks));
10189566063dSJacob Faibussowitsch   PetscCall(PetscTableGetHeadPosition(table, &pos));
101921c688dcSJed Brown   for (i = 0; i < sf->nranks; i++) {
10209566063dSJacob Faibussowitsch     PetscCall(PetscTableGetNext(table, &pos, &ranks[i], &rcount[i]));
102121c688dcSJed Brown     ranks[i]--; /* Convert back to 0-based */
102221c688dcSJed Brown   }
10239566063dSJacob Faibussowitsch   PetscCall(PetscTableDestroy(&table));
1024b5a8e515SJed Brown 
1025b5a8e515SJed Brown   /* We expect that dgroup is reliably "small" while nranks could be large */
1026b5a8e515SJed Brown   {
10277fb8a5e4SKarl Rupp     MPI_Group    group = MPI_GROUP_NULL;
1028b5a8e515SJed Brown     PetscMPIInt *dgroupranks;
10299566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_group(PetscObjectComm((PetscObject)sf), &group));
10309566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Group_size(dgroup, &groupsize));
10319566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(groupsize, &dgroupranks));
10329566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(groupsize, &groupranks));
1033b5a8e515SJed Brown     for (i = 0; i < groupsize; i++) dgroupranks[i] = i;
10349566063dSJacob Faibussowitsch     if (groupsize) PetscCallMPI(MPI_Group_translate_ranks(dgroup, groupsize, dgroupranks, group, groupranks));
10359566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Group_free(&group));
10369566063dSJacob Faibussowitsch     PetscCall(PetscFree(dgroupranks));
1037b5a8e515SJed Brown   }
1038b5a8e515SJed Brown 
1039b5a8e515SJed Brown   /* Partition ranks[] into distinguished (first sf->ndranks) followed by non-distinguished */
1040b5a8e515SJed Brown   for (sf->ndranks = 0, i = sf->nranks; sf->ndranks < i;) {
1041b5a8e515SJed Brown     for (i--; sf->ndranks < i; i--) { /* Scan i backward looking for distinguished rank */
1042b5a8e515SJed Brown       if (InList(ranks[i], groupsize, groupranks)) break;
1043b5a8e515SJed Brown     }
1044b5a8e515SJed Brown     for (; sf->ndranks <= i; sf->ndranks++) { /* Scan sf->ndranks forward looking for non-distinguished rank */
1045b5a8e515SJed Brown       if (!InList(ranks[sf->ndranks], groupsize, groupranks)) break;
1046b5a8e515SJed Brown     }
1047b5a8e515SJed Brown     if (sf->ndranks < i) { /* Swap ranks[sf->ndranks] with ranks[i] */
1048b5a8e515SJed Brown       PetscInt tmprank, tmpcount;
1049247e8311SStefano Zampini 
1050b5a8e515SJed Brown       tmprank             = ranks[i];
1051b5a8e515SJed Brown       tmpcount            = rcount[i];
1052b5a8e515SJed Brown       ranks[i]            = ranks[sf->ndranks];
1053b5a8e515SJed Brown       rcount[i]           = rcount[sf->ndranks];
1054b5a8e515SJed Brown       ranks[sf->ndranks]  = tmprank;
1055b5a8e515SJed Brown       rcount[sf->ndranks] = tmpcount;
1056b5a8e515SJed Brown       sf->ndranks++;
1057b5a8e515SJed Brown     }
1058b5a8e515SJed Brown   }
10599566063dSJacob Faibussowitsch   PetscCall(PetscFree(groupranks));
10609566063dSJacob Faibussowitsch   PetscCall(PetscSortIntWithArray(sf->ndranks, ranks, rcount));
10619566063dSJacob Faibussowitsch   PetscCall(PetscSortIntWithArray(sf->nranks - sf->ndranks, ranks + sf->ndranks, rcount + sf->ndranks));
106221c688dcSJed Brown   sf->roffset[0] = 0;
106321c688dcSJed Brown   for (i = 0; i < sf->nranks; i++) {
10649566063dSJacob Faibussowitsch     PetscCall(PetscMPIIntCast(ranks[i], sf->ranks + i));
106521c688dcSJed Brown     sf->roffset[i + 1] = sf->roffset[i] + rcount[i];
106621c688dcSJed Brown     rcount[i]          = 0;
106721c688dcSJed Brown   }
1068247e8311SStefano Zampini   for (i = 0, irank = -1, orank = -1; i < sf->nleaves; i++) {
1069247e8311SStefano Zampini     /* short circuit */
1070247e8311SStefano Zampini     if (orank != sf->remote[i].rank) {
107121c688dcSJed Brown       /* Search for index of iremote[i].rank in sf->ranks */
10729566063dSJacob Faibussowitsch       PetscCall(PetscFindMPIInt(sf->remote[i].rank, sf->ndranks, sf->ranks, &irank));
1073b5a8e515SJed Brown       if (irank < 0) {
10749566063dSJacob Faibussowitsch         PetscCall(PetscFindMPIInt(sf->remote[i].rank, sf->nranks - sf->ndranks, sf->ranks + sf->ndranks, &irank));
1075b5a8e515SJed Brown         if (irank >= 0) irank += sf->ndranks;
107621c688dcSJed Brown       }
1077247e8311SStefano Zampini       orank = sf->remote[i].rank;
1078247e8311SStefano Zampini     }
107908401ef6SPierre Jolivet     PetscCheck(irank >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Could not find rank %" PetscInt_FMT " in array", sf->remote[i].rank);
108021c688dcSJed Brown     sf->rmine[sf->roffset[irank] + rcount[irank]]   = sf->mine ? sf->mine[i] : i;
108121c688dcSJed Brown     sf->rremote[sf->roffset[irank] + rcount[irank]] = sf->remote[i].index;
108221c688dcSJed Brown     rcount[irank]++;
108321c688dcSJed Brown   }
10849566063dSJacob Faibussowitsch   PetscCall(PetscFree2(rcount, ranks));
108521c688dcSJed Brown   PetscFunctionReturn(0);
108621c688dcSJed Brown }
108721c688dcSJed Brown 
108821c688dcSJed Brown /*@C
108995fce210SBarry Smith    PetscSFGetGroups - gets incoming and outgoing process groups
109095fce210SBarry Smith 
109195fce210SBarry Smith    Collective
109295fce210SBarry Smith 
10934165533cSJose E. Roman    Input Parameter:
109495fce210SBarry Smith .  sf - star forest
109595fce210SBarry Smith 
10964165533cSJose E. Roman    Output Parameters:
109795fce210SBarry Smith +  incoming - group of origin processes for incoming edges (leaves that reference my roots)
109895fce210SBarry Smith -  outgoing - group of destination processes for outgoing edges (roots that I reference)
109995fce210SBarry Smith 
110095fce210SBarry Smith    Level: developer
110195fce210SBarry Smith 
1102cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFGetWindow()`, `PetscSFRestoreWindow()`
110395fce210SBarry Smith @*/
1104d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFGetGroups(PetscSF sf, MPI_Group *incoming, MPI_Group *outgoing)
1105d71ae5a4SJacob Faibussowitsch {
11067fb8a5e4SKarl Rupp   MPI_Group group = MPI_GROUP_NULL;
110795fce210SBarry Smith 
110895fce210SBarry Smith   PetscFunctionBegin;
110908401ef6SPierre Jolivet   PetscCheck(sf->nranks >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Must call PetscSFSetUpRanks() before obtaining groups");
111095fce210SBarry Smith   if (sf->ingroup == MPI_GROUP_NULL) {
111195fce210SBarry Smith     PetscInt        i;
111295fce210SBarry Smith     const PetscInt *indegree;
111395fce210SBarry Smith     PetscMPIInt     rank, *outranks, *inranks;
111495fce210SBarry Smith     PetscSFNode    *remote;
111595fce210SBarry Smith     PetscSF         bgcount;
111695fce210SBarry Smith 
111795fce210SBarry Smith     /* Compute the number of incoming ranks */
11189566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(sf->nranks, &remote));
111995fce210SBarry Smith     for (i = 0; i < sf->nranks; i++) {
112095fce210SBarry Smith       remote[i].rank  = sf->ranks[i];
112195fce210SBarry Smith       remote[i].index = 0;
112295fce210SBarry Smith     }
11239566063dSJacob Faibussowitsch     PetscCall(PetscSFDuplicate(sf, PETSCSF_DUPLICATE_CONFONLY, &bgcount));
11249566063dSJacob Faibussowitsch     PetscCall(PetscSFSetGraph(bgcount, 1, sf->nranks, NULL, PETSC_COPY_VALUES, remote, PETSC_OWN_POINTER));
11259566063dSJacob Faibussowitsch     PetscCall(PetscSFComputeDegreeBegin(bgcount, &indegree));
11269566063dSJacob Faibussowitsch     PetscCall(PetscSFComputeDegreeEnd(bgcount, &indegree));
112795fce210SBarry Smith     /* Enumerate the incoming ranks */
11289566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(indegree[0], &inranks, sf->nranks, &outranks));
11299566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)sf), &rank));
113095fce210SBarry Smith     for (i = 0; i < sf->nranks; i++) outranks[i] = rank;
11319566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherBegin(bgcount, MPI_INT, outranks, inranks));
11329566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherEnd(bgcount, MPI_INT, outranks, inranks));
11339566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_group(PetscObjectComm((PetscObject)sf), &group));
11349566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Group_incl(group, indegree[0], inranks, &sf->ingroup));
11359566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Group_free(&group));
11369566063dSJacob Faibussowitsch     PetscCall(PetscFree2(inranks, outranks));
11379566063dSJacob Faibussowitsch     PetscCall(PetscSFDestroy(&bgcount));
113895fce210SBarry Smith   }
113995fce210SBarry Smith   *incoming = sf->ingroup;
114095fce210SBarry Smith 
114195fce210SBarry Smith   if (sf->outgroup == MPI_GROUP_NULL) {
11429566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_group(PetscObjectComm((PetscObject)sf), &group));
11439566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Group_incl(group, sf->nranks, sf->ranks, &sf->outgroup));
11449566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Group_free(&group));
114595fce210SBarry Smith   }
114695fce210SBarry Smith   *outgoing = sf->outgroup;
114795fce210SBarry Smith   PetscFunctionReturn(0);
114895fce210SBarry Smith }
114995fce210SBarry Smith 
115029046d53SLisandro Dalcin /*@
1151cab54364SBarry Smith    PetscSFGetMultiSF - gets the inner `PetscSF` implementing gathers and scatters
115295fce210SBarry Smith 
115395fce210SBarry Smith    Collective
115495fce210SBarry Smith 
11554165533cSJose E. Roman    Input Parameter:
115695fce210SBarry Smith .  sf - star forest that may contain roots with 0 or with more than 1 vertex
115795fce210SBarry Smith 
11584165533cSJose E. Roman    Output Parameter:
115995fce210SBarry Smith .  multi - star forest with split roots, such that each root has degree exactly 1
116095fce210SBarry Smith 
116195fce210SBarry Smith    Level: developer
116295fce210SBarry Smith 
1163cab54364SBarry Smith    Note:
1164cab54364SBarry Smith    In most cases, users should use `PetscSFGatherBegin()` and `PetscSFScatterBegin()` instead of manipulating multi
116595fce210SBarry Smith    directly. Since multi satisfies the stronger condition that each entry in the global space has exactly one incoming
116695fce210SBarry Smith    edge, it is a candidate for future optimization that might involve its removal.
116795fce210SBarry Smith 
1168cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFSetGraph()`, `PetscSFGatherBegin()`, `PetscSFScatterBegin()`, `PetscSFComputeMultiRootOriginalNumbering()`
116995fce210SBarry Smith @*/
1170d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFGetMultiSF(PetscSF sf, PetscSF *multi)
1171d71ae5a4SJacob Faibussowitsch {
117295fce210SBarry Smith   PetscFunctionBegin;
117395fce210SBarry Smith   PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1);
117495fce210SBarry Smith   PetscValidPointer(multi, 2);
117595fce210SBarry Smith   if (sf->nroots < 0) { /* Graph has not been set yet; why do we need this? */
11769566063dSJacob Faibussowitsch     PetscCall(PetscSFDuplicate(sf, PETSCSF_DUPLICATE_RANKS, &sf->multi));
117795fce210SBarry Smith     *multi           = sf->multi;
1178013b3241SStefano Zampini     sf->multi->multi = sf->multi;
117995fce210SBarry Smith     PetscFunctionReturn(0);
118095fce210SBarry Smith   }
118195fce210SBarry Smith   if (!sf->multi) {
118295fce210SBarry Smith     const PetscInt *indegree;
11839837ea96SMatthew G. Knepley     PetscInt        i, *inoffset, *outones, *outoffset, maxlocal;
118495fce210SBarry Smith     PetscSFNode    *remote;
118529046d53SLisandro Dalcin     maxlocal = sf->maxleaf + 1; /* TODO: We should use PetscSFGetLeafRange() */
11869566063dSJacob Faibussowitsch     PetscCall(PetscSFComputeDegreeBegin(sf, &indegree));
11879566063dSJacob Faibussowitsch     PetscCall(PetscSFComputeDegreeEnd(sf, &indegree));
11889566063dSJacob Faibussowitsch     PetscCall(PetscMalloc3(sf->nroots + 1, &inoffset, maxlocal, &outones, maxlocal, &outoffset));
118995fce210SBarry Smith     inoffset[0] = 0;
119095fce210SBarry Smith     for (i = 0; i < sf->nroots; i++) inoffset[i + 1] = inoffset[i] + indegree[i];
11919837ea96SMatthew G. Knepley     for (i = 0; i < maxlocal; i++) outones[i] = 1;
11929566063dSJacob Faibussowitsch     PetscCall(PetscSFFetchAndOpBegin(sf, MPIU_INT, inoffset, outones, outoffset, MPI_SUM));
11939566063dSJacob Faibussowitsch     PetscCall(PetscSFFetchAndOpEnd(sf, MPIU_INT, inoffset, outones, outoffset, MPI_SUM));
119495fce210SBarry Smith     for (i = 0; i < sf->nroots; i++) inoffset[i] -= indegree[i]; /* Undo the increment */
119576bd3646SJed Brown     if (PetscDefined(USE_DEBUG)) {                               /* Check that the expected number of increments occurred */
1196ad540459SPierre Jolivet       for (i = 0; i < sf->nroots; i++) PetscCheck(inoffset[i] + indegree[i] == inoffset[i + 1], PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect result after PetscSFFetchAndOp");
119776bd3646SJed Brown     }
11989566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(sf->nleaves, &remote));
119995fce210SBarry Smith     for (i = 0; i < sf->nleaves; i++) {
120095fce210SBarry Smith       remote[i].rank  = sf->remote[i].rank;
120138e7336fSToby Isaac       remote[i].index = outoffset[sf->mine ? sf->mine[i] : i];
120295fce210SBarry Smith     }
12039566063dSJacob Faibussowitsch     PetscCall(PetscSFDuplicate(sf, PETSCSF_DUPLICATE_RANKS, &sf->multi));
1204013b3241SStefano Zampini     sf->multi->multi = sf->multi;
12059566063dSJacob Faibussowitsch     PetscCall(PetscSFSetGraph(sf->multi, inoffset[sf->nroots], sf->nleaves, sf->mine, PETSC_COPY_VALUES, remote, PETSC_OWN_POINTER));
120695fce210SBarry Smith     if (sf->rankorder) { /* Sort the ranks */
120795fce210SBarry Smith       PetscMPIInt  rank;
120895fce210SBarry Smith       PetscInt    *inranks, *newoffset, *outranks, *newoutoffset, *tmpoffset, maxdegree;
120995fce210SBarry Smith       PetscSFNode *newremote;
12109566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)sf), &rank));
121195fce210SBarry Smith       for (i = 0, maxdegree = 0; i < sf->nroots; i++) maxdegree = PetscMax(maxdegree, indegree[i]);
12129566063dSJacob Faibussowitsch       PetscCall(PetscMalloc5(sf->multi->nroots, &inranks, sf->multi->nroots, &newoffset, maxlocal, &outranks, maxlocal, &newoutoffset, maxdegree, &tmpoffset));
12139837ea96SMatthew G. Knepley       for (i = 0; i < maxlocal; i++) outranks[i] = rank;
12149566063dSJacob Faibussowitsch       PetscCall(PetscSFReduceBegin(sf->multi, MPIU_INT, outranks, inranks, MPI_REPLACE));
12159566063dSJacob Faibussowitsch       PetscCall(PetscSFReduceEnd(sf->multi, MPIU_INT, outranks, inranks, MPI_REPLACE));
121695fce210SBarry Smith       /* Sort the incoming ranks at each vertex, build the inverse map */
121795fce210SBarry Smith       for (i = 0; i < sf->nroots; i++) {
121895fce210SBarry Smith         PetscInt j;
121995fce210SBarry Smith         for (j = 0; j < indegree[i]; j++) tmpoffset[j] = j;
12209566063dSJacob Faibussowitsch         PetscCall(PetscSortIntWithArray(indegree[i], inranks + inoffset[i], tmpoffset));
122195fce210SBarry Smith         for (j = 0; j < indegree[i]; j++) newoffset[inoffset[i] + tmpoffset[j]] = inoffset[i] + j;
122295fce210SBarry Smith       }
12239566063dSJacob Faibussowitsch       PetscCall(PetscSFBcastBegin(sf->multi, MPIU_INT, newoffset, newoutoffset, MPI_REPLACE));
12249566063dSJacob Faibussowitsch       PetscCall(PetscSFBcastEnd(sf->multi, MPIU_INT, newoffset, newoutoffset, MPI_REPLACE));
12259566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(sf->nleaves, &newremote));
122695fce210SBarry Smith       for (i = 0; i < sf->nleaves; i++) {
122795fce210SBarry Smith         newremote[i].rank  = sf->remote[i].rank;
122801365b40SToby Isaac         newremote[i].index = newoutoffset[sf->mine ? sf->mine[i] : i];
122995fce210SBarry Smith       }
12309566063dSJacob Faibussowitsch       PetscCall(PetscSFSetGraph(sf->multi, inoffset[sf->nroots], sf->nleaves, sf->mine, PETSC_COPY_VALUES, newremote, PETSC_OWN_POINTER));
12319566063dSJacob Faibussowitsch       PetscCall(PetscFree5(inranks, newoffset, outranks, newoutoffset, tmpoffset));
123295fce210SBarry Smith     }
12339566063dSJacob Faibussowitsch     PetscCall(PetscFree3(inoffset, outones, outoffset));
123495fce210SBarry Smith   }
123595fce210SBarry Smith   *multi = sf->multi;
123695fce210SBarry Smith   PetscFunctionReturn(0);
123795fce210SBarry Smith }
123895fce210SBarry Smith 
123995fce210SBarry Smith /*@C
124072502a1fSJunchao Zhang    PetscSFCreateEmbeddedRootSF - removes edges from all but the selected roots, does not remap indices
124195fce210SBarry Smith 
124295fce210SBarry Smith    Collective
124395fce210SBarry Smith 
12444165533cSJose E. Roman    Input Parameters:
124595fce210SBarry Smith +  sf - original star forest
1246ba2a7774SJunchao Zhang .  nselected  - number of selected roots on this process
1247ba2a7774SJunchao Zhang -  selected   - indices of the selected roots on this process
124895fce210SBarry Smith 
12494165533cSJose E. Roman    Output Parameter:
1250cd620004SJunchao Zhang .  esf - new star forest
125195fce210SBarry Smith 
125295fce210SBarry Smith    Level: advanced
125395fce210SBarry Smith 
125495fce210SBarry Smith    Note:
1255cab54364SBarry Smith    To use the new `PetscSF`, it may be necessary to know the indices of the leaves that are still participating. This can
125695fce210SBarry Smith    be done by calling PetscSFGetGraph().
125795fce210SBarry Smith 
1258cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFSetGraph()`, `PetscSFGetGraph()`
125995fce210SBarry Smith @*/
1260d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFCreateEmbeddedRootSF(PetscSF sf, PetscInt nselected, const PetscInt *selected, PetscSF *esf)
1261d71ae5a4SJacob Faibussowitsch {
1262cd620004SJunchao Zhang   PetscInt           i, j, n, nroots, nleaves, esf_nleaves, *new_ilocal, minleaf, maxleaf, maxlocal;
1263cd620004SJunchao Zhang   const PetscInt    *ilocal;
1264cd620004SJunchao Zhang   signed char       *rootdata, *leafdata, *leafmem;
1265ba2a7774SJunchao Zhang   const PetscSFNode *iremote;
1266f659e5c7SJunchao Zhang   PetscSFNode       *new_iremote;
1267f659e5c7SJunchao Zhang   MPI_Comm           comm;
126895fce210SBarry Smith 
126995fce210SBarry Smith   PetscFunctionBegin;
127095fce210SBarry Smith   PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1);
127129046d53SLisandro Dalcin   PetscSFCheckGraphSet(sf, 1);
1272dadcf809SJacob Faibussowitsch   if (nselected) PetscValidIntPointer(selected, 3);
1273cd620004SJunchao Zhang   PetscValidPointer(esf, 4);
12740511a646SMatthew G. Knepley 
12759566063dSJacob Faibussowitsch   PetscCall(PetscSFSetUp(sf));
12769566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(PETSCSF_EmbedSF, sf, 0, 0, 0));
12779566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)sf, &comm));
12789566063dSJacob Faibussowitsch   PetscCall(PetscSFGetGraph(sf, &nroots, &nleaves, &ilocal, &iremote));
1279cd620004SJunchao Zhang 
128076bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) { /* Error out if selected[] has dups or  out of range indices */
1281cd620004SJunchao Zhang     PetscBool dups;
12829566063dSJacob Faibussowitsch     PetscCall(PetscCheckDupsInt(nselected, selected, &dups));
128328b400f6SJacob Faibussowitsch     PetscCheck(!dups, comm, PETSC_ERR_ARG_WRONG, "selected[] has dups");
12849371c9d4SSatish Balay     for (i = 0; i < nselected; i++) PetscCheck(selected[i] >= 0 && selected[i] < nroots, comm, PETSC_ERR_ARG_OUTOFRANGE, "selected root indice %" PetscInt_FMT " is out of [0,%" PetscInt_FMT ")", selected[i], nroots);
1285cd620004SJunchao Zhang   }
1286f659e5c7SJunchao Zhang 
1287dbbe0bcdSBarry Smith   if (sf->ops->CreateEmbeddedRootSF) PetscUseTypeMethod(sf, CreateEmbeddedRootSF, nselected, selected, esf);
1288dbbe0bcdSBarry Smith   else {
1289cd620004SJunchao Zhang     /* A generic version of creating embedded sf */
12909566063dSJacob Faibussowitsch     PetscCall(PetscSFGetLeafRange(sf, &minleaf, &maxleaf));
1291cd620004SJunchao Zhang     maxlocal = maxleaf - minleaf + 1;
12929566063dSJacob Faibussowitsch     PetscCall(PetscCalloc2(nroots, &rootdata, maxlocal, &leafmem));
1293cd620004SJunchao Zhang     leafdata = leafmem - minleaf;
1294cd620004SJunchao Zhang     /* Tag selected roots and bcast to leaves */
1295cd620004SJunchao Zhang     for (i = 0; i < nselected; i++) rootdata[selected[i]] = 1;
12969566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastBegin(sf, MPI_SIGNED_CHAR, rootdata, leafdata, MPI_REPLACE));
12979566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastEnd(sf, MPI_SIGNED_CHAR, rootdata, leafdata, MPI_REPLACE));
1298ba2a7774SJunchao Zhang 
1299cd620004SJunchao Zhang     /* Build esf with leaves that are still connected */
1300cd620004SJunchao Zhang     esf_nleaves = 0;
1301cd620004SJunchao Zhang     for (i = 0; i < nleaves; i++) {
1302cd620004SJunchao Zhang       j = ilocal ? ilocal[i] : i;
1303cd620004SJunchao Zhang       /* esf_nleaves += leafdata[j] should work in theory, but failed with SFWindow bugs
1304cd620004SJunchao Zhang          with PetscSFBcast. See https://gitlab.com/petsc/petsc/issues/555
1305cd620004SJunchao Zhang       */
1306cd620004SJunchao Zhang       esf_nleaves += (leafdata[j] ? 1 : 0);
1307cd620004SJunchao Zhang     }
13089566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(esf_nleaves, &new_ilocal));
13099566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(esf_nleaves, &new_iremote));
1310cd620004SJunchao Zhang     for (i = n = 0; i < nleaves; i++) {
1311cd620004SJunchao Zhang       j = ilocal ? ilocal[i] : i;
1312cd620004SJunchao Zhang       if (leafdata[j]) {
1313cd620004SJunchao Zhang         new_ilocal[n]        = j;
1314cd620004SJunchao Zhang         new_iremote[n].rank  = iremote[i].rank;
1315cd620004SJunchao Zhang         new_iremote[n].index = iremote[i].index;
1316fc1ede2bSMatthew G. Knepley         ++n;
131795fce210SBarry Smith       }
131895fce210SBarry Smith     }
13199566063dSJacob Faibussowitsch     PetscCall(PetscSFCreate(comm, esf));
13209566063dSJacob Faibussowitsch     PetscCall(PetscSFSetFromOptions(*esf));
13219566063dSJacob Faibussowitsch     PetscCall(PetscSFSetGraph(*esf, nroots, esf_nleaves, new_ilocal, PETSC_OWN_POINTER, new_iremote, PETSC_OWN_POINTER));
13229566063dSJacob Faibussowitsch     PetscCall(PetscFree2(rootdata, leafmem));
1323f659e5c7SJunchao Zhang   }
13249566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(PETSCSF_EmbedSF, sf, 0, 0, 0));
132595fce210SBarry Smith   PetscFunctionReturn(0);
132695fce210SBarry Smith }
132795fce210SBarry Smith 
13282f5fb4c2SMatthew G. Knepley /*@C
13292f5fb4c2SMatthew G. Knepley   PetscSFCreateEmbeddedLeafSF - removes edges from all but the selected leaves, does not remap indices
13302f5fb4c2SMatthew G. Knepley 
13312f5fb4c2SMatthew G. Knepley   Collective
13322f5fb4c2SMatthew G. Knepley 
13334165533cSJose E. Roman   Input Parameters:
13342f5fb4c2SMatthew G. Knepley + sf - original star forest
1335f659e5c7SJunchao Zhang . nselected  - number of selected leaves on this process
1336f659e5c7SJunchao Zhang - selected   - indices of the selected leaves on this process
13372f5fb4c2SMatthew G. Knepley 
13384165533cSJose E. Roman   Output Parameter:
13392f5fb4c2SMatthew G. Knepley .  newsf - new star forest
13402f5fb4c2SMatthew G. Knepley 
13412f5fb4c2SMatthew G. Knepley   Level: advanced
13422f5fb4c2SMatthew G. Knepley 
1343cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFCreateEmbeddedRootSF()`, `PetscSFSetGraph()`, `PetscSFGetGraph()`
13442f5fb4c2SMatthew G. Knepley @*/
1345d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFCreateEmbeddedLeafSF(PetscSF sf, PetscInt nselected, const PetscInt *selected, PetscSF *newsf)
1346d71ae5a4SJacob Faibussowitsch {
1347f659e5c7SJunchao Zhang   const PetscSFNode *iremote;
1348f659e5c7SJunchao Zhang   PetscSFNode       *new_iremote;
1349f659e5c7SJunchao Zhang   const PetscInt    *ilocal;
1350f659e5c7SJunchao Zhang   PetscInt           i, nroots, *leaves, *new_ilocal;
1351f659e5c7SJunchao Zhang   MPI_Comm           comm;
13522f5fb4c2SMatthew G. Knepley 
13532f5fb4c2SMatthew G. Knepley   PetscFunctionBegin;
13542f5fb4c2SMatthew G. Knepley   PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1);
135529046d53SLisandro Dalcin   PetscSFCheckGraphSet(sf, 1);
1356dadcf809SJacob Faibussowitsch   if (nselected) PetscValidIntPointer(selected, 3);
13572f5fb4c2SMatthew G. Knepley   PetscValidPointer(newsf, 4);
13582f5fb4c2SMatthew G. Knepley 
1359f659e5c7SJunchao Zhang   /* Uniq selected[] and put results in leaves[] */
13609566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)sf, &comm));
13619566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nselected, &leaves));
13629566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(leaves, selected, nselected));
13639566063dSJacob Faibussowitsch   PetscCall(PetscSortedRemoveDupsInt(&nselected, leaves));
136408401ef6SPierre Jolivet   PetscCheck(!nselected || !(leaves[0] < 0 || leaves[nselected - 1] >= sf->nleaves), comm, PETSC_ERR_ARG_OUTOFRANGE, "Min/Max leaf indices %" PetscInt_FMT "/%" PetscInt_FMT " are not in [0,%" PetscInt_FMT ")", leaves[0], leaves[nselected - 1], sf->nleaves);
1365f659e5c7SJunchao Zhang 
1366f659e5c7SJunchao Zhang   /* Optimize the routine only when sf is setup and hence we can reuse sf's communication pattern */
1367dbbe0bcdSBarry Smith   if (sf->setupcalled && sf->ops->CreateEmbeddedLeafSF) PetscUseTypeMethod(sf, CreateEmbeddedLeafSF, nselected, leaves, newsf);
1368dbbe0bcdSBarry Smith   else {
13699566063dSJacob Faibussowitsch     PetscCall(PetscSFGetGraph(sf, &nroots, NULL, &ilocal, &iremote));
13709566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nselected, &new_ilocal));
13719566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nselected, &new_iremote));
1372f659e5c7SJunchao Zhang     for (i = 0; i < nselected; ++i) {
1373f659e5c7SJunchao Zhang       const PetscInt l     = leaves[i];
1374f659e5c7SJunchao Zhang       new_ilocal[i]        = ilocal ? ilocal[l] : l;
1375f659e5c7SJunchao Zhang       new_iremote[i].rank  = iremote[l].rank;
1376f659e5c7SJunchao Zhang       new_iremote[i].index = iremote[l].index;
13772f5fb4c2SMatthew G. Knepley     }
13789566063dSJacob Faibussowitsch     PetscCall(PetscSFDuplicate(sf, PETSCSF_DUPLICATE_CONFONLY, newsf));
13799566063dSJacob Faibussowitsch     PetscCall(PetscSFSetGraph(*newsf, nroots, nselected, new_ilocal, PETSC_OWN_POINTER, new_iremote, PETSC_OWN_POINTER));
1380f659e5c7SJunchao Zhang   }
13819566063dSJacob Faibussowitsch   PetscCall(PetscFree(leaves));
13822f5fb4c2SMatthew G. Knepley   PetscFunctionReturn(0);
13832f5fb4c2SMatthew G. Knepley }
13842f5fb4c2SMatthew G. Knepley 
138595fce210SBarry Smith /*@C
1386cab54364SBarry Smith    PetscSFBcastBegin - begin pointwise broadcast with root value being reduced to leaf value, to be concluded with call to `PetscSFBcastEnd()`
13873482bfa8SJunchao Zhang 
1388cab54364SBarry Smith    Collective on sf
13893482bfa8SJunchao Zhang 
13904165533cSJose E. Roman    Input Parameters:
13913482bfa8SJunchao Zhang +  sf - star forest on which to communicate
13923482bfa8SJunchao Zhang .  unit - data type associated with each node
13933482bfa8SJunchao Zhang .  rootdata - buffer to broadcast
13943482bfa8SJunchao Zhang -  op - operation to use for reduction
13953482bfa8SJunchao Zhang 
13964165533cSJose E. Roman    Output Parameter:
13973482bfa8SJunchao Zhang .  leafdata - buffer to be reduced with values from each leaf's respective root
13983482bfa8SJunchao Zhang 
13993482bfa8SJunchao Zhang    Level: intermediate
14003482bfa8SJunchao Zhang 
1401d0295fc0SJunchao Zhang    Notes:
1402d0295fc0SJunchao Zhang     When petsc is configured with device support, it will use its own mechanism to figure out whether the given data pointers
1403d0295fc0SJunchao Zhang     are host pointers or device pointers, which may incur a noticable cost. If you already knew the info, you should
1404cab54364SBarry Smith     use `PetscSFBcastWithMemTypeBegin()` instead.
1405cab54364SBarry Smith 
1406cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFBcastEnd()`, `PetscSFBcastWithMemTypeBegin()`
14073482bfa8SJunchao Zhang @*/
1408d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFBcastBegin(PetscSF sf, MPI_Datatype unit, const void *rootdata, void *leafdata, MPI_Op op)
1409d71ae5a4SJacob Faibussowitsch {
1410eb02082bSJunchao Zhang   PetscMemType rootmtype, leafmtype;
14113482bfa8SJunchao Zhang 
14123482bfa8SJunchao Zhang   PetscFunctionBegin;
14133482bfa8SJunchao Zhang   PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1);
14149566063dSJacob Faibussowitsch   PetscCall(PetscSFSetUp(sf));
14159566063dSJacob Faibussowitsch   if (!sf->vscat.logging) PetscCall(PetscLogEventBegin(PETSCSF_BcastBegin, sf, 0, 0, 0));
14169566063dSJacob Faibussowitsch   PetscCall(PetscGetMemType(rootdata, &rootmtype));
14179566063dSJacob Faibussowitsch   PetscCall(PetscGetMemType(leafdata, &leafmtype));
1418dbbe0bcdSBarry Smith   PetscUseTypeMethod(sf, BcastBegin, unit, rootmtype, rootdata, leafmtype, leafdata, op);
14199566063dSJacob Faibussowitsch   if (!sf->vscat.logging) PetscCall(PetscLogEventEnd(PETSCSF_BcastBegin, sf, 0, 0, 0));
14203482bfa8SJunchao Zhang   PetscFunctionReturn(0);
14213482bfa8SJunchao Zhang }
14223482bfa8SJunchao Zhang 
14233482bfa8SJunchao Zhang /*@C
1424cab54364SBarry Smith    PetscSFBcastWithMemTypeBegin - begin pointwise broadcast with root value being reduced to leaf value with explicit memory types, to be concluded with call to `PetscSFBcastEnd()`
1425d0295fc0SJunchao Zhang 
1426cab54364SBarry Smith    Collective on sf
1427d0295fc0SJunchao Zhang 
14284165533cSJose E. Roman    Input Parameters:
1429d0295fc0SJunchao Zhang +  sf - star forest on which to communicate
1430d0295fc0SJunchao Zhang .  unit - data type associated with each node
1431d0295fc0SJunchao Zhang .  rootmtype - memory type of rootdata
1432d0295fc0SJunchao Zhang .  rootdata - buffer to broadcast
1433d0295fc0SJunchao Zhang .  leafmtype - memory type of leafdata
1434d0295fc0SJunchao Zhang -  op - operation to use for reduction
1435d0295fc0SJunchao Zhang 
14364165533cSJose E. Roman    Output Parameter:
1437d0295fc0SJunchao Zhang .  leafdata - buffer to be reduced with values from each leaf's respective root
1438d0295fc0SJunchao Zhang 
1439d0295fc0SJunchao Zhang    Level: intermediate
1440d0295fc0SJunchao Zhang 
1441cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFBcastEnd()`, `PetscSFBcastBegin()`
1442d0295fc0SJunchao Zhang @*/
1443d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFBcastWithMemTypeBegin(PetscSF sf, MPI_Datatype unit, PetscMemType rootmtype, const void *rootdata, PetscMemType leafmtype, void *leafdata, MPI_Op op)
1444d71ae5a4SJacob Faibussowitsch {
1445d0295fc0SJunchao Zhang   PetscFunctionBegin;
1446d0295fc0SJunchao Zhang   PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1);
14479566063dSJacob Faibussowitsch   PetscCall(PetscSFSetUp(sf));
14489566063dSJacob Faibussowitsch   if (!sf->vscat.logging) PetscCall(PetscLogEventBegin(PETSCSF_BcastBegin, sf, 0, 0, 0));
1449dbbe0bcdSBarry Smith   PetscUseTypeMethod(sf, BcastBegin, unit, rootmtype, rootdata, leafmtype, leafdata, op);
14509566063dSJacob Faibussowitsch   if (!sf->vscat.logging) PetscCall(PetscLogEventEnd(PETSCSF_BcastBegin, sf, 0, 0, 0));
1451d0295fc0SJunchao Zhang   PetscFunctionReturn(0);
1452d0295fc0SJunchao Zhang }
1453d0295fc0SJunchao Zhang 
1454d0295fc0SJunchao Zhang /*@C
1455cab54364SBarry Smith    PetscSFBcastEnd - end a broadcast & reduce operation started with `PetscSFBcastBegin()`
14563482bfa8SJunchao Zhang 
14573482bfa8SJunchao Zhang    Collective
14583482bfa8SJunchao Zhang 
14594165533cSJose E. Roman    Input Parameters:
14603482bfa8SJunchao Zhang +  sf - star forest
14613482bfa8SJunchao Zhang .  unit - data type
14623482bfa8SJunchao Zhang .  rootdata - buffer to broadcast
14633482bfa8SJunchao Zhang -  op - operation to use for reduction
14643482bfa8SJunchao Zhang 
14654165533cSJose E. Roman    Output Parameter:
14663482bfa8SJunchao Zhang .  leafdata - buffer to be reduced with values from each leaf's respective root
14673482bfa8SJunchao Zhang 
14683482bfa8SJunchao Zhang    Level: intermediate
14693482bfa8SJunchao Zhang 
1470cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFSetGraph()`, `PetscSFReduceEnd()`
14713482bfa8SJunchao Zhang @*/
1472d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFBcastEnd(PetscSF sf, MPI_Datatype unit, const void *rootdata, void *leafdata, MPI_Op op)
1473d71ae5a4SJacob Faibussowitsch {
14743482bfa8SJunchao Zhang   PetscFunctionBegin;
14753482bfa8SJunchao Zhang   PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1);
14769566063dSJacob Faibussowitsch   if (!sf->vscat.logging) PetscCall(PetscLogEventBegin(PETSCSF_BcastEnd, sf, 0, 0, 0));
1477dbbe0bcdSBarry Smith   PetscUseTypeMethod(sf, BcastEnd, unit, rootdata, leafdata, op);
14789566063dSJacob Faibussowitsch   if (!sf->vscat.logging) PetscCall(PetscLogEventEnd(PETSCSF_BcastEnd, sf, 0, 0, 0));
14793482bfa8SJunchao Zhang   PetscFunctionReturn(0);
14803482bfa8SJunchao Zhang }
14813482bfa8SJunchao Zhang 
14823482bfa8SJunchao Zhang /*@C
1483cab54364SBarry Smith    PetscSFReduceBegin - begin reduction of leafdata into rootdata, to be completed with call to `PetscSFReduceEnd()`
148495fce210SBarry Smith 
148595fce210SBarry Smith    Collective
148695fce210SBarry Smith 
14874165533cSJose E. Roman    Input Parameters:
148895fce210SBarry Smith +  sf - star forest
148995fce210SBarry Smith .  unit - data type
149095fce210SBarry Smith .  leafdata - values to reduce
149195fce210SBarry Smith -  op - reduction operation
149295fce210SBarry Smith 
14934165533cSJose E. Roman    Output Parameter:
149495fce210SBarry Smith .  rootdata - result of reduction of values from all leaves of each root
149595fce210SBarry Smith 
149695fce210SBarry Smith    Level: intermediate
149795fce210SBarry Smith 
1498d0295fc0SJunchao Zhang    Notes:
1499d0295fc0SJunchao Zhang     When petsc is configured with device support, it will use its own mechanism to figure out whether the given data pointers
1500d0295fc0SJunchao Zhang     are host pointers or device pointers, which may incur a noticable cost. If you already knew the info, you should
1501cab54364SBarry Smith     use `PetscSFReduceWithMemTypeBegin()` instead.
1502d0295fc0SJunchao Zhang 
1503cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFBcastBegin()`, `PetscSFReduceWithMemTypeBegin()`
150495fce210SBarry Smith @*/
1505d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFReduceBegin(PetscSF sf, MPI_Datatype unit, const void *leafdata, void *rootdata, MPI_Op op)
1506d71ae5a4SJacob Faibussowitsch {
1507eb02082bSJunchao Zhang   PetscMemType rootmtype, leafmtype;
150895fce210SBarry Smith 
150995fce210SBarry Smith   PetscFunctionBegin;
151095fce210SBarry Smith   PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1);
15119566063dSJacob Faibussowitsch   PetscCall(PetscSFSetUp(sf));
15129566063dSJacob Faibussowitsch   if (!sf->vscat.logging) PetscCall(PetscLogEventBegin(PETSCSF_ReduceBegin, sf, 0, 0, 0));
15139566063dSJacob Faibussowitsch   PetscCall(PetscGetMemType(rootdata, &rootmtype));
15149566063dSJacob Faibussowitsch   PetscCall(PetscGetMemType(leafdata, &leafmtype));
15159566063dSJacob Faibussowitsch   PetscCall((sf->ops->ReduceBegin)(sf, unit, leafmtype, leafdata, rootmtype, rootdata, op));
15169566063dSJacob Faibussowitsch   if (!sf->vscat.logging) PetscCall(PetscLogEventEnd(PETSCSF_ReduceBegin, sf, 0, 0, 0));
151795fce210SBarry Smith   PetscFunctionReturn(0);
151895fce210SBarry Smith }
151995fce210SBarry Smith 
152095fce210SBarry Smith /*@C
1521cab54364SBarry Smith    PetscSFReduceWithMemTypeBegin - begin reduction of leafdata into rootdata with explicit memory types, to be completed with call to `PetscSFReduceEnd()`
1522d0295fc0SJunchao Zhang 
1523d0295fc0SJunchao Zhang    Collective
1524d0295fc0SJunchao Zhang 
15254165533cSJose E. Roman    Input Parameters:
1526d0295fc0SJunchao Zhang +  sf - star forest
1527d0295fc0SJunchao Zhang .  unit - data type
1528d0295fc0SJunchao Zhang .  leafmtype - memory type of leafdata
1529d0295fc0SJunchao Zhang .  leafdata - values to reduce
1530d0295fc0SJunchao Zhang .  rootmtype - memory type of rootdata
1531d0295fc0SJunchao Zhang -  op - reduction operation
1532d0295fc0SJunchao Zhang 
15334165533cSJose E. Roman    Output Parameter:
1534d0295fc0SJunchao Zhang .  rootdata - result of reduction of values from all leaves of each root
1535d0295fc0SJunchao Zhang 
1536d0295fc0SJunchao Zhang    Level: intermediate
1537d0295fc0SJunchao Zhang 
1538cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFBcastBegin()`, `PetscSFReduceBegin()`
1539d0295fc0SJunchao Zhang @*/
1540d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFReduceWithMemTypeBegin(PetscSF sf, MPI_Datatype unit, PetscMemType leafmtype, const void *leafdata, PetscMemType rootmtype, void *rootdata, MPI_Op op)
1541d71ae5a4SJacob Faibussowitsch {
1542d0295fc0SJunchao Zhang   PetscFunctionBegin;
1543d0295fc0SJunchao Zhang   PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1);
15449566063dSJacob Faibussowitsch   PetscCall(PetscSFSetUp(sf));
15459566063dSJacob Faibussowitsch   if (!sf->vscat.logging) PetscCall(PetscLogEventBegin(PETSCSF_ReduceBegin, sf, 0, 0, 0));
15469566063dSJacob Faibussowitsch   PetscCall((sf->ops->ReduceBegin)(sf, unit, leafmtype, leafdata, rootmtype, rootdata, op));
15479566063dSJacob Faibussowitsch   if (!sf->vscat.logging) PetscCall(PetscLogEventEnd(PETSCSF_ReduceBegin, sf, 0, 0, 0));
1548d0295fc0SJunchao Zhang   PetscFunctionReturn(0);
1549d0295fc0SJunchao Zhang }
1550d0295fc0SJunchao Zhang 
1551d0295fc0SJunchao Zhang /*@C
1552cab54364SBarry Smith    PetscSFReduceEnd - end a reduction operation started with `PetscSFReduceBegin()`
155395fce210SBarry Smith 
155495fce210SBarry Smith    Collective
155595fce210SBarry Smith 
15564165533cSJose E. Roman    Input Parameters:
155795fce210SBarry Smith +  sf - star forest
155895fce210SBarry Smith .  unit - data type
155995fce210SBarry Smith .  leafdata - values to reduce
156095fce210SBarry Smith -  op - reduction operation
156195fce210SBarry Smith 
15624165533cSJose E. Roman    Output Parameter:
156395fce210SBarry Smith .  rootdata - result of reduction of values from all leaves of each root
156495fce210SBarry Smith 
156595fce210SBarry Smith    Level: intermediate
156695fce210SBarry Smith 
1567cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFSetGraph()`, `PetscSFBcastEnd()`
156895fce210SBarry Smith @*/
1569d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFReduceEnd(PetscSF sf, MPI_Datatype unit, const void *leafdata, void *rootdata, MPI_Op op)
1570d71ae5a4SJacob Faibussowitsch {
157195fce210SBarry Smith   PetscFunctionBegin;
157295fce210SBarry Smith   PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1);
15739566063dSJacob Faibussowitsch   if (!sf->vscat.logging) PetscCall(PetscLogEventBegin(PETSCSF_ReduceEnd, sf, 0, 0, 0));
1574dbbe0bcdSBarry Smith   PetscUseTypeMethod(sf, ReduceEnd, unit, leafdata, rootdata, op);
15759566063dSJacob Faibussowitsch   if (!sf->vscat.logging) PetscCall(PetscLogEventEnd(PETSCSF_ReduceEnd, sf, 0, 0, 0));
157695fce210SBarry Smith   PetscFunctionReturn(0);
157795fce210SBarry Smith }
157895fce210SBarry Smith 
157995fce210SBarry Smith /*@C
1580cab54364SBarry Smith    PetscSFFetchAndOpBegin - begin operation that fetches values from root and updates atomically by applying operation using my leaf value,
1581cab54364SBarry Smith    to be completed with `PetscSFFetchAndOpEnd()`
1582a1729e3fSJunchao Zhang 
1583a1729e3fSJunchao Zhang    Collective
1584a1729e3fSJunchao Zhang 
15854165533cSJose E. Roman    Input Parameters:
1586a1729e3fSJunchao Zhang +  sf - star forest
1587a1729e3fSJunchao Zhang .  unit - data type
1588a1729e3fSJunchao Zhang .  leafdata - leaf values to use in reduction
1589a1729e3fSJunchao Zhang -  op - operation to use for reduction
1590a1729e3fSJunchao Zhang 
15914165533cSJose E. Roman    Output Parameters:
1592a1729e3fSJunchao Zhang +  rootdata - root values to be updated, input state is seen by first process to perform an update
1593a1729e3fSJunchao Zhang -  leafupdate - state at each leaf's respective root immediately prior to my atomic update
1594a1729e3fSJunchao Zhang 
1595a1729e3fSJunchao Zhang    Level: advanced
1596a1729e3fSJunchao Zhang 
1597a1729e3fSJunchao Zhang    Note:
1598a1729e3fSJunchao Zhang    The update is only atomic at the granularity provided by the hardware. Different roots referenced by the same process
1599a1729e3fSJunchao Zhang    might be updated in a different order. Furthermore, if a composite type is used for the unit datatype, atomicity is
1600a1729e3fSJunchao Zhang    not guaranteed across the whole vertex. Therefore, this function is mostly only used with primitive types such as
1601a1729e3fSJunchao Zhang    integers.
1602a1729e3fSJunchao Zhang 
1603cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFComputeDegreeBegin()`, `PetscSFReduceBegin()`, `PetscSFSetGraph()`
1604a1729e3fSJunchao Zhang @*/
1605d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFFetchAndOpBegin(PetscSF sf, MPI_Datatype unit, void *rootdata, const void *leafdata, void *leafupdate, MPI_Op op)
1606d71ae5a4SJacob Faibussowitsch {
1607eb02082bSJunchao Zhang   PetscMemType rootmtype, leafmtype, leafupdatemtype;
1608a1729e3fSJunchao Zhang 
1609a1729e3fSJunchao Zhang   PetscFunctionBegin;
1610a1729e3fSJunchao Zhang   PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1);
16119566063dSJacob Faibussowitsch   PetscCall(PetscSFSetUp(sf));
16129566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(PETSCSF_FetchAndOpBegin, sf, 0, 0, 0));
16139566063dSJacob Faibussowitsch   PetscCall(PetscGetMemType(rootdata, &rootmtype));
16149566063dSJacob Faibussowitsch   PetscCall(PetscGetMemType(leafdata, &leafmtype));
16159566063dSJacob Faibussowitsch   PetscCall(PetscGetMemType(leafupdate, &leafupdatemtype));
161608401ef6SPierre Jolivet   PetscCheck(leafmtype == leafupdatemtype, PETSC_COMM_SELF, PETSC_ERR_SUP, "No support for leafdata and leafupdate in different memory types");
1617dbbe0bcdSBarry Smith   PetscUseTypeMethod(sf, FetchAndOpBegin, unit, rootmtype, rootdata, leafmtype, leafdata, leafupdate, op);
16189566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(PETSCSF_FetchAndOpBegin, sf, 0, 0, 0));
1619a1729e3fSJunchao Zhang   PetscFunctionReturn(0);
1620a1729e3fSJunchao Zhang }
1621a1729e3fSJunchao Zhang 
1622a1729e3fSJunchao Zhang /*@C
1623cab54364SBarry Smith    PetscSFFetchAndOpWithMemTypeBegin - begin operation with explicit memory types that fetches values from root and updates atomically by
1624cab54364SBarry Smith    applying operation using my leaf value, to be completed with `PetscSFFetchAndOpEnd()`
1625d3b3e55cSJunchao Zhang 
1626d3b3e55cSJunchao Zhang    Collective
1627d3b3e55cSJunchao Zhang 
1628d3b3e55cSJunchao Zhang    Input Parameters:
1629d3b3e55cSJunchao Zhang +  sf - star forest
1630d3b3e55cSJunchao Zhang .  unit - data type
1631d3b3e55cSJunchao Zhang .  rootmtype - memory type of rootdata
1632d3b3e55cSJunchao Zhang .  leafmtype - memory type of leafdata
1633d3b3e55cSJunchao Zhang .  leafdata - leaf values to use in reduction
1634d3b3e55cSJunchao Zhang .  leafupdatemtype - memory type of leafupdate
1635d3b3e55cSJunchao Zhang -  op - operation to use for reduction
1636d3b3e55cSJunchao Zhang 
1637d3b3e55cSJunchao Zhang    Output Parameters:
1638d3b3e55cSJunchao Zhang +  rootdata - root values to be updated, input state is seen by first process to perform an update
1639d3b3e55cSJunchao Zhang -  leafupdate - state at each leaf's respective root immediately prior to my atomic update
1640d3b3e55cSJunchao Zhang 
1641d3b3e55cSJunchao Zhang    Level: advanced
1642d3b3e55cSJunchao Zhang 
1643cab54364SBarry Smith    Note:
1644cab54364SBarry Smith    See `PetscSFFetchAndOpBegin()` for more details.
1645d3b3e55cSJunchao Zhang 
1646cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFFetchAndOpBegin()`, `PetscSFComputeDegreeBegin()`, `PetscSFReduceBegin()`, `PetscSFSetGraph()`
1647d3b3e55cSJunchao Zhang @*/
1648d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFFetchAndOpWithMemTypeBegin(PetscSF sf, MPI_Datatype unit, PetscMemType rootmtype, void *rootdata, PetscMemType leafmtype, const void *leafdata, PetscMemType leafupdatemtype, void *leafupdate, MPI_Op op)
1649d71ae5a4SJacob Faibussowitsch {
1650d3b3e55cSJunchao Zhang   PetscFunctionBegin;
1651d3b3e55cSJunchao Zhang   PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1);
16529566063dSJacob Faibussowitsch   PetscCall(PetscSFSetUp(sf));
16539566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(PETSCSF_FetchAndOpBegin, sf, 0, 0, 0));
165408401ef6SPierre Jolivet   PetscCheck(leafmtype == leafupdatemtype, PETSC_COMM_SELF, PETSC_ERR_SUP, "No support for leafdata and leafupdate in different memory types");
1655dbbe0bcdSBarry Smith   PetscUseTypeMethod(sf, FetchAndOpBegin, unit, rootmtype, rootdata, leafmtype, leafdata, leafupdate, op);
16569566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(PETSCSF_FetchAndOpBegin, sf, 0, 0, 0));
1657d3b3e55cSJunchao Zhang   PetscFunctionReturn(0);
1658d3b3e55cSJunchao Zhang }
1659d3b3e55cSJunchao Zhang 
1660d3b3e55cSJunchao Zhang /*@C
1661a1729e3fSJunchao Zhang    PetscSFFetchAndOpEnd - end operation started in matching call to PetscSFFetchAndOpBegin() to fetch values from roots and update atomically by applying operation using my leaf value
1662a1729e3fSJunchao Zhang 
1663a1729e3fSJunchao Zhang    Collective
1664a1729e3fSJunchao Zhang 
16654165533cSJose E. Roman    Input Parameters:
1666a1729e3fSJunchao Zhang +  sf - star forest
1667a1729e3fSJunchao Zhang .  unit - data type
1668a1729e3fSJunchao Zhang .  leafdata - leaf values to use in reduction
1669a1729e3fSJunchao Zhang -  op - operation to use for reduction
1670a1729e3fSJunchao Zhang 
16714165533cSJose E. Roman    Output Parameters:
1672a1729e3fSJunchao Zhang +  rootdata - root values to be updated, input state is seen by first process to perform an update
1673a1729e3fSJunchao Zhang -  leafupdate - state at each leaf's respective root immediately prior to my atomic update
1674a1729e3fSJunchao Zhang 
1675a1729e3fSJunchao Zhang    Level: advanced
1676a1729e3fSJunchao Zhang 
1677cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFComputeDegreeEnd()`, `PetscSFReduceEnd()`, `PetscSFSetGraph()`
1678a1729e3fSJunchao Zhang @*/
1679d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFFetchAndOpEnd(PetscSF sf, MPI_Datatype unit, void *rootdata, const void *leafdata, void *leafupdate, MPI_Op op)
1680d71ae5a4SJacob Faibussowitsch {
1681a1729e3fSJunchao Zhang   PetscFunctionBegin;
1682a1729e3fSJunchao Zhang   PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1);
16839566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(PETSCSF_FetchAndOpEnd, sf, 0, 0, 0));
1684dbbe0bcdSBarry Smith   PetscUseTypeMethod(sf, FetchAndOpEnd, unit, rootdata, leafdata, leafupdate, op);
16859566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(PETSCSF_FetchAndOpEnd, sf, 0, 0, 0));
1686a1729e3fSJunchao Zhang   PetscFunctionReturn(0);
1687a1729e3fSJunchao Zhang }
1688a1729e3fSJunchao Zhang 
1689a1729e3fSJunchao Zhang /*@C
1690cab54364SBarry Smith    PetscSFComputeDegreeBegin - begin computation of degree for each root vertex, to be completed with `PetscSFComputeDegreeEnd()`
169195fce210SBarry Smith 
169295fce210SBarry Smith    Collective
169395fce210SBarry Smith 
16944165533cSJose E. Roman    Input Parameter:
169595fce210SBarry Smith .  sf - star forest
169695fce210SBarry Smith 
16974165533cSJose E. Roman    Output Parameter:
169895fce210SBarry Smith .  degree - degree of each root vertex
169995fce210SBarry Smith 
170095fce210SBarry Smith    Level: advanced
170195fce210SBarry Smith 
1702cab54364SBarry Smith    Note:
1703cab54364SBarry Smith    The returned array is owned by `PetscSF` and automatically freed by `PetscSFDestroy()`. Hence no need to call `PetscFree()` on it.
1704ffe67aa5SVáclav Hapla 
1705cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFGatherBegin()`, `PetscSFComputeDegreeEnd()`
170695fce210SBarry Smith @*/
1707d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFComputeDegreeBegin(PetscSF sf, const PetscInt **degree)
1708d71ae5a4SJacob Faibussowitsch {
170995fce210SBarry Smith   PetscFunctionBegin;
171095fce210SBarry Smith   PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1);
171195fce210SBarry Smith   PetscSFCheckGraphSet(sf, 1);
171295fce210SBarry Smith   PetscValidPointer(degree, 2);
1713803bd9e8SMatthew G. Knepley   if (!sf->degreeknown) {
17145b0d146aSStefano Zampini     PetscInt i, nroots = sf->nroots, maxlocal;
171528b400f6SJacob Faibussowitsch     PetscCheck(!sf->degree, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Calls to PetscSFComputeDegreeBegin() cannot be nested.");
17165b0d146aSStefano Zampini     maxlocal = sf->maxleaf - sf->minleaf + 1;
17179566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nroots, &sf->degree));
17189566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(PetscMax(maxlocal, 1), &sf->degreetmp)); /* allocate at least one entry, see check in PetscSFComputeDegreeEnd() */
171929046d53SLisandro Dalcin     for (i = 0; i < nroots; i++) sf->degree[i] = 0;
17209837ea96SMatthew G. Knepley     for (i = 0; i < maxlocal; i++) sf->degreetmp[i] = 1;
17219566063dSJacob Faibussowitsch     PetscCall(PetscSFReduceBegin(sf, MPIU_INT, sf->degreetmp - sf->minleaf, sf->degree, MPI_SUM));
172295fce210SBarry Smith   }
172395fce210SBarry Smith   *degree = NULL;
172495fce210SBarry Smith   PetscFunctionReturn(0);
172595fce210SBarry Smith }
172695fce210SBarry Smith 
172795fce210SBarry Smith /*@C
1728cab54364SBarry Smith    PetscSFComputeDegreeEnd - complete computation of degree for each root vertex, started with `PetscSFComputeDegreeBegin()`
172995fce210SBarry Smith 
173095fce210SBarry Smith    Collective
173195fce210SBarry Smith 
17324165533cSJose E. Roman    Input Parameter:
173395fce210SBarry Smith .  sf - star forest
173495fce210SBarry Smith 
17354165533cSJose E. Roman    Output Parameter:
173695fce210SBarry Smith .  degree - degree of each root vertex
173795fce210SBarry Smith 
173895fce210SBarry Smith    Level: developer
173995fce210SBarry Smith 
1740cab54364SBarry Smith    Note:
1741cab54364SBarry Smith    The returned array is owned by `PetscSF` and automatically freed by `PetscSFDestroy()`. Hence no need to call `PetscFree()` on it.
1742ffe67aa5SVáclav Hapla 
1743cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFGatherBegin()`, `PetscSFComputeDegreeBegin()`
174495fce210SBarry Smith @*/
1745d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFComputeDegreeEnd(PetscSF sf, const PetscInt **degree)
1746d71ae5a4SJacob Faibussowitsch {
174795fce210SBarry Smith   PetscFunctionBegin;
174895fce210SBarry Smith   PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1);
174995fce210SBarry Smith   PetscSFCheckGraphSet(sf, 1);
175029046d53SLisandro Dalcin   PetscValidPointer(degree, 2);
175195fce210SBarry Smith   if (!sf->degreeknown) {
175228b400f6SJacob Faibussowitsch     PetscCheck(sf->degreetmp, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Must call PetscSFComputeDegreeBegin() before PetscSFComputeDegreeEnd()");
17539566063dSJacob Faibussowitsch     PetscCall(PetscSFReduceEnd(sf, MPIU_INT, sf->degreetmp - sf->minleaf, sf->degree, MPI_SUM));
17549566063dSJacob Faibussowitsch     PetscCall(PetscFree(sf->degreetmp));
175595fce210SBarry Smith     sf->degreeknown = PETSC_TRUE;
175695fce210SBarry Smith   }
175795fce210SBarry Smith   *degree = sf->degree;
175895fce210SBarry Smith   PetscFunctionReturn(0);
175995fce210SBarry Smith }
176095fce210SBarry Smith 
1761673100f5SVaclav Hapla /*@C
1762cab54364SBarry Smith    PetscSFComputeMultiRootOriginalNumbering - Returns original numbering of multi-roots (roots of multi-SF returned by `PetscSFGetMultiSF()`).
176366dfcd1aSVaclav Hapla    Each multi-root is assigned index of the corresponding original root.
1764673100f5SVaclav Hapla 
1765673100f5SVaclav Hapla    Collective
1766673100f5SVaclav Hapla 
17674165533cSJose E. Roman    Input Parameters:
1768673100f5SVaclav Hapla +  sf - star forest
1769cab54364SBarry Smith -  degree - degree of each root vertex, computed with `PetscSFComputeDegreeBegin()`/`PetscSFComputeDegreeEnd()`
1770673100f5SVaclav Hapla 
17714165533cSJose E. Roman    Output Parameters:
177266dfcd1aSVaclav Hapla +  nMultiRoots - (optional) number of multi-roots (roots of multi-SF)
177366dfcd1aSVaclav Hapla -  multiRootsOrigNumbering - original indices of multi-roots; length of this array is nMultiRoots
1774673100f5SVaclav Hapla 
1775673100f5SVaclav Hapla    Level: developer
1776673100f5SVaclav Hapla 
1777cab54364SBarry Smith    Note:
1778cab54364SBarry Smith    The returned array multiRootsOrigNumbering is newly allocated and should be destroyed with `PetscFree()` when no longer needed.
1779ffe67aa5SVáclav Hapla 
1780cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFComputeDegreeBegin()`, `PetscSFComputeDegreeEnd()`, `PetscSFGetMultiSF()`
1781673100f5SVaclav Hapla @*/
1782d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFComputeMultiRootOriginalNumbering(PetscSF sf, const PetscInt degree[], PetscInt *nMultiRoots, PetscInt *multiRootsOrigNumbering[])
1783d71ae5a4SJacob Faibussowitsch {
1784673100f5SVaclav Hapla   PetscSF  msf;
1785673100f5SVaclav Hapla   PetscInt i, j, k, nroots, nmroots;
1786673100f5SVaclav Hapla 
1787673100f5SVaclav Hapla   PetscFunctionBegin;
1788673100f5SVaclav Hapla   PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1);
17899566063dSJacob Faibussowitsch   PetscCall(PetscSFGetGraph(sf, &nroots, NULL, NULL, NULL));
179029328920SVaclav Hapla   if (nroots) PetscValidIntPointer(degree, 2);
179166dfcd1aSVaclav Hapla   if (nMultiRoots) PetscValidIntPointer(nMultiRoots, 3);
179266dfcd1aSVaclav Hapla   PetscValidPointer(multiRootsOrigNumbering, 4);
17939566063dSJacob Faibussowitsch   PetscCall(PetscSFGetMultiSF(sf, &msf));
17949566063dSJacob Faibussowitsch   PetscCall(PetscSFGetGraph(msf, &nmroots, NULL, NULL, NULL));
17959566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nmroots, multiRootsOrigNumbering));
1796673100f5SVaclav Hapla   for (i = 0, j = 0, k = 0; i < nroots; i++) {
1797673100f5SVaclav Hapla     if (!degree[i]) continue;
1798ad540459SPierre Jolivet     for (j = 0; j < degree[i]; j++, k++) (*multiRootsOrigNumbering)[k] = i;
1799673100f5SVaclav Hapla   }
180008401ef6SPierre Jolivet   PetscCheck(k == nmroots, PETSC_COMM_SELF, PETSC_ERR_PLIB, "sanity check fail");
180166dfcd1aSVaclav Hapla   if (nMultiRoots) *nMultiRoots = nmroots;
1802673100f5SVaclav Hapla   PetscFunctionReturn(0);
1803673100f5SVaclav Hapla }
1804673100f5SVaclav Hapla 
180595fce210SBarry Smith /*@C
1806cab54364SBarry Smith    PetscSFGatherBegin - begin pointwise gather of all leaves into multi-roots, to be completed with `PetscSFGatherEnd()`
180795fce210SBarry Smith 
180895fce210SBarry Smith    Collective
180995fce210SBarry Smith 
18104165533cSJose E. Roman    Input Parameters:
181195fce210SBarry Smith +  sf - star forest
181295fce210SBarry Smith .  unit - data type
181395fce210SBarry Smith -  leafdata - leaf data to gather to roots
181495fce210SBarry Smith 
18154165533cSJose E. Roman    Output Parameter:
181695fce210SBarry Smith .  multirootdata - root buffer to gather into, amount of space per root is equal to its degree
181795fce210SBarry Smith 
181895fce210SBarry Smith    Level: intermediate
181995fce210SBarry Smith 
1820cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFComputeDegreeBegin()`, `PetscSFScatterBegin()`
182195fce210SBarry Smith @*/
1822d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFGatherBegin(PetscSF sf, MPI_Datatype unit, const void *leafdata, void *multirootdata)
1823d71ae5a4SJacob Faibussowitsch {
1824a5526d50SJunchao Zhang   PetscSF multi = NULL;
182595fce210SBarry Smith 
182695fce210SBarry Smith   PetscFunctionBegin;
182795fce210SBarry Smith   PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1);
18289566063dSJacob Faibussowitsch   PetscCall(PetscSFSetUp(sf));
18299566063dSJacob Faibussowitsch   PetscCall(PetscSFGetMultiSF(sf, &multi));
18309566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceBegin(multi, unit, leafdata, multirootdata, MPI_REPLACE));
183195fce210SBarry Smith   PetscFunctionReturn(0);
183295fce210SBarry Smith }
183395fce210SBarry Smith 
183495fce210SBarry Smith /*@C
1835cab54364SBarry Smith    PetscSFGatherEnd - ends pointwise gather operation that was started with `PetscSFGatherBegin()`
183695fce210SBarry Smith 
183795fce210SBarry Smith    Collective
183895fce210SBarry Smith 
18394165533cSJose E. Roman    Input Parameters:
184095fce210SBarry Smith +  sf - star forest
184195fce210SBarry Smith .  unit - data type
184295fce210SBarry Smith -  leafdata - leaf data to gather to roots
184395fce210SBarry Smith 
18444165533cSJose E. Roman    Output Parameter:
184595fce210SBarry Smith .  multirootdata - root buffer to gather into, amount of space per root is equal to its degree
184695fce210SBarry Smith 
184795fce210SBarry Smith    Level: intermediate
184895fce210SBarry Smith 
1849cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFComputeDegreeEnd()`, `PetscSFScatterEnd()`
185095fce210SBarry Smith @*/
1851d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFGatherEnd(PetscSF sf, MPI_Datatype unit, const void *leafdata, void *multirootdata)
1852d71ae5a4SJacob Faibussowitsch {
1853a5526d50SJunchao Zhang   PetscSF multi = NULL;
185495fce210SBarry Smith 
185595fce210SBarry Smith   PetscFunctionBegin;
185695fce210SBarry Smith   PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1);
18579566063dSJacob Faibussowitsch   PetscCall(PetscSFGetMultiSF(sf, &multi));
18589566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceEnd(multi, unit, leafdata, multirootdata, MPI_REPLACE));
185995fce210SBarry Smith   PetscFunctionReturn(0);
186095fce210SBarry Smith }
186195fce210SBarry Smith 
186295fce210SBarry Smith /*@C
1863cab54364SBarry Smith    PetscSFScatterBegin - begin pointwise scatter operation from multi-roots to leaves, to be completed with `PetscSFScatterEnd()`
186495fce210SBarry Smith 
186595fce210SBarry Smith    Collective
186695fce210SBarry Smith 
18674165533cSJose E. Roman    Input Parameters:
186895fce210SBarry Smith +  sf - star forest
186995fce210SBarry Smith .  unit - data type
187095fce210SBarry Smith -  multirootdata - root buffer to send to each leaf, one unit of data per leaf
187195fce210SBarry Smith 
18724165533cSJose E. Roman    Output Parameter:
187395fce210SBarry Smith .  leafdata - leaf data to be update with personal data from each respective root
187495fce210SBarry Smith 
187595fce210SBarry Smith    Level: intermediate
187695fce210SBarry Smith 
1877cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFComputeDegreeBegin()`, `PetscSFScatterBegin()`
187895fce210SBarry Smith @*/
1879d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFScatterBegin(PetscSF sf, MPI_Datatype unit, const void *multirootdata, void *leafdata)
1880d71ae5a4SJacob Faibussowitsch {
1881a5526d50SJunchao Zhang   PetscSF multi = NULL;
188295fce210SBarry Smith 
188395fce210SBarry Smith   PetscFunctionBegin;
188495fce210SBarry Smith   PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1);
18859566063dSJacob Faibussowitsch   PetscCall(PetscSFSetUp(sf));
18869566063dSJacob Faibussowitsch   PetscCall(PetscSFGetMultiSF(sf, &multi));
18879566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(multi, unit, multirootdata, leafdata, MPI_REPLACE));
188895fce210SBarry Smith   PetscFunctionReturn(0);
188995fce210SBarry Smith }
189095fce210SBarry Smith 
189195fce210SBarry Smith /*@C
1892cab54364SBarry Smith    PetscSFScatterEnd - ends pointwise scatter operation that was started with `PetscSFScatterBegin()`
189395fce210SBarry Smith 
189495fce210SBarry Smith    Collective
189595fce210SBarry Smith 
18964165533cSJose E. Roman    Input Parameters:
189795fce210SBarry Smith +  sf - star forest
189895fce210SBarry Smith .  unit - data type
189995fce210SBarry Smith -  multirootdata - root buffer to send to each leaf, one unit of data per leaf
190095fce210SBarry Smith 
19014165533cSJose E. Roman    Output Parameter:
190295fce210SBarry Smith .  leafdata - leaf data to be update with personal data from each respective root
190395fce210SBarry Smith 
190495fce210SBarry Smith    Level: intermediate
190595fce210SBarry Smith 
1906cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFComputeDegreeEnd()`, `PetscSFScatterEnd()`
190795fce210SBarry Smith @*/
1908d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFScatterEnd(PetscSF sf, MPI_Datatype unit, const void *multirootdata, void *leafdata)
1909d71ae5a4SJacob Faibussowitsch {
1910a5526d50SJunchao Zhang   PetscSF multi = NULL;
191195fce210SBarry Smith 
191295fce210SBarry Smith   PetscFunctionBegin;
191395fce210SBarry Smith   PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1);
19149566063dSJacob Faibussowitsch   PetscCall(PetscSFGetMultiSF(sf, &multi));
19159566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(multi, unit, multirootdata, leafdata, MPI_REPLACE));
191695fce210SBarry Smith   PetscFunctionReturn(0);
191795fce210SBarry Smith }
1918a7b3aa13SAta Mesgarnejad 
1919d71ae5a4SJacob Faibussowitsch static PetscErrorCode PetscSFCheckLeavesUnique_Private(PetscSF sf)
1920d71ae5a4SJacob Faibussowitsch {
1921a072220fSLawrence Mitchell   PetscInt        i, n, nleaves;
1922a072220fSLawrence Mitchell   const PetscInt *ilocal = NULL;
1923a072220fSLawrence Mitchell   PetscHSetI      seen;
1924a072220fSLawrence Mitchell 
1925a072220fSLawrence Mitchell   PetscFunctionBegin;
1926b458e8f1SJose E. Roman   if (PetscDefined(USE_DEBUG)) {
19279566063dSJacob Faibussowitsch     PetscCall(PetscSFGetGraph(sf, NULL, &nleaves, &ilocal, NULL));
19289566063dSJacob Faibussowitsch     PetscCall(PetscHSetICreate(&seen));
1929a072220fSLawrence Mitchell     for (i = 0; i < nleaves; i++) {
1930a072220fSLawrence Mitchell       const PetscInt leaf = ilocal ? ilocal[i] : i;
19319566063dSJacob Faibussowitsch       PetscCall(PetscHSetIAdd(seen, leaf));
1932a072220fSLawrence Mitchell     }
19339566063dSJacob Faibussowitsch     PetscCall(PetscHSetIGetSize(seen, &n));
193408401ef6SPierre Jolivet     PetscCheck(n == nleaves, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Provided leaves have repeated values: all leaves must be unique");
19359566063dSJacob Faibussowitsch     PetscCall(PetscHSetIDestroy(&seen));
1936b458e8f1SJose E. Roman   }
1937a072220fSLawrence Mitchell   PetscFunctionReturn(0);
1938a072220fSLawrence Mitchell }
193954729392SStefano Zampini 
1940a7b3aa13SAta Mesgarnejad /*@
1941cab54364SBarry Smith   PetscSFCompose - Compose a new `PetscSF` by putting the second `PetscSF` under the first one in a top (roots) down (leaves) view
1942a7b3aa13SAta Mesgarnejad 
1943a7b3aa13SAta Mesgarnejad   Input Parameters:
1944cab54364SBarry Smith + sfA - The first `PetscSF`
1945cab54364SBarry Smith - sfB - The second `PetscSF`
1946a7b3aa13SAta Mesgarnejad 
1947a7b3aa13SAta Mesgarnejad   Output Parameters:
1948cab54364SBarry Smith . sfBA - The composite `PetscSF`
1949a7b3aa13SAta Mesgarnejad 
1950a7b3aa13SAta Mesgarnejad   Level: developer
1951a7b3aa13SAta Mesgarnejad 
1952a072220fSLawrence Mitchell   Notes:
1953cab54364SBarry Smith   Currently, the two `PetscSF`s must be defined on congruent communicators and they must be true star
195454729392SStefano Zampini   forests, i.e. the same leaf is not connected with different roots.
195554729392SStefano Zampini 
195654729392SStefano Zampini   sfA's leaf space and sfB's root space might be partially overlapped. The composition builds
195754729392SStefano Zampini   a graph with sfA's roots and sfB's leaves only when there is a path between them. Unconnected
195854729392SStefano Zampini   nodes (roots or leaves) are not in sfBA. Doing a Bcast on the new SF is equivalent to doing a
195954729392SStefano Zampini   Bcast on sfA, then a Bcast on sfB, on connected nodes.
1960a072220fSLawrence Mitchell 
1961db781477SPatrick Sanan .seealso: `PetscSF`, `PetscSFComposeInverse()`, `PetscSFGetGraph()`, `PetscSFSetGraph()`
1962a7b3aa13SAta Mesgarnejad @*/
1963d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFCompose(PetscSF sfA, PetscSF sfB, PetscSF *sfBA)
1964d71ae5a4SJacob Faibussowitsch {
1965a7b3aa13SAta Mesgarnejad   const PetscSFNode *remotePointsA, *remotePointsB;
1966d41018fbSJunchao Zhang   PetscSFNode       *remotePointsBA = NULL, *reorderedRemotePointsA = NULL, *leafdataB;
196754729392SStefano Zampini   const PetscInt    *localPointsA, *localPointsB;
196854729392SStefano Zampini   PetscInt          *localPointsBA;
196954729392SStefano Zampini   PetscInt           i, numRootsA, numLeavesA, numRootsB, numLeavesB, minleaf, maxleaf, numLeavesBA;
197054729392SStefano Zampini   PetscBool          denseB;
1971a7b3aa13SAta Mesgarnejad 
1972a7b3aa13SAta Mesgarnejad   PetscFunctionBegin;
1973a7b3aa13SAta Mesgarnejad   PetscValidHeaderSpecific(sfA, PETSCSF_CLASSID, 1);
197429046d53SLisandro Dalcin   PetscSFCheckGraphSet(sfA, 1);
197529046d53SLisandro Dalcin   PetscValidHeaderSpecific(sfB, PETSCSF_CLASSID, 2);
197629046d53SLisandro Dalcin   PetscSFCheckGraphSet(sfB, 2);
197754729392SStefano Zampini   PetscCheckSameComm(sfA, 1, sfB, 2);
197829046d53SLisandro Dalcin   PetscValidPointer(sfBA, 3);
19799566063dSJacob Faibussowitsch   PetscCall(PetscSFCheckLeavesUnique_Private(sfA));
19809566063dSJacob Faibussowitsch   PetscCall(PetscSFCheckLeavesUnique_Private(sfB));
198154729392SStefano Zampini 
19829566063dSJacob Faibussowitsch   PetscCall(PetscSFGetGraph(sfA, &numRootsA, &numLeavesA, &localPointsA, &remotePointsA));
19839566063dSJacob Faibussowitsch   PetscCall(PetscSFGetGraph(sfB, &numRootsB, &numLeavesB, &localPointsB, &remotePointsB));
19840ea77edaSksagiyam   /* Make sure that PetscSFBcast{Begin, End}(sfB, ...) works with root data of size       */
19850ea77edaSksagiyam   /* numRootsB; otherwise, garbage will be broadcasted.                                   */
19860ea77edaSksagiyam   /* Example (comm size = 1):                                                             */
19870ea77edaSksagiyam   /* sfA: 0 <- (0, 0)                                                                     */
19880ea77edaSksagiyam   /* sfB: 100 <- (0, 0)                                                                   */
19890ea77edaSksagiyam   /*      101 <- (0, 1)                                                                   */
19900ea77edaSksagiyam   /* Here, we have remotePointsA = [(0, 0)], but for remotePointsA to be a valid tartget  */
19910ea77edaSksagiyam   /* of sfB, it has to be recasted as [(0, 0), (-1, -1)] so that points 100 and 101 would */
19920ea77edaSksagiyam   /* receive (0, 0) and (-1, -1), respectively, when PetscSFBcast(sfB, ...) is called on  */
19930ea77edaSksagiyam   /* remotePointsA; if not recasted, point 101 would receive a garbage value.             */
19949566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(numRootsB, &reorderedRemotePointsA));
199554729392SStefano Zampini   for (i = 0; i < numRootsB; i++) {
199654729392SStefano Zampini     reorderedRemotePointsA[i].rank  = -1;
199754729392SStefano Zampini     reorderedRemotePointsA[i].index = -1;
199854729392SStefano Zampini   }
199954729392SStefano Zampini   for (i = 0; i < numLeavesA; i++) {
20000ea77edaSksagiyam     PetscInt localp = localPointsA ? localPointsA[i] : i;
20010ea77edaSksagiyam 
20020ea77edaSksagiyam     if (localp >= numRootsB) continue;
20030ea77edaSksagiyam     reorderedRemotePointsA[localp] = remotePointsA[i];
200454729392SStefano Zampini   }
2005d41018fbSJunchao Zhang   remotePointsA = reorderedRemotePointsA;
20069566063dSJacob Faibussowitsch   PetscCall(PetscSFGetLeafRange(sfB, &minleaf, &maxleaf));
20079566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(maxleaf - minleaf + 1, &leafdataB));
20080ea77edaSksagiyam   for (i = 0; i < maxleaf - minleaf + 1; i++) {
20090ea77edaSksagiyam     leafdataB[i].rank  = -1;
20100ea77edaSksagiyam     leafdataB[i].index = -1;
20110ea77edaSksagiyam   }
20129566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sfB, MPIU_2INT, remotePointsA, leafdataB - minleaf, MPI_REPLACE));
20139566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sfB, MPIU_2INT, remotePointsA, leafdataB - minleaf, MPI_REPLACE));
20149566063dSJacob Faibussowitsch   PetscCall(PetscFree(reorderedRemotePointsA));
2015d41018fbSJunchao Zhang 
201654729392SStefano Zampini   denseB = (PetscBool)!localPointsB;
201754729392SStefano Zampini   for (i = 0, numLeavesBA = 0; i < numLeavesB; i++) {
201854729392SStefano Zampini     if (leafdataB[localPointsB ? localPointsB[i] - minleaf : i].rank == -1) denseB = PETSC_FALSE;
201954729392SStefano Zampini     else numLeavesBA++;
202054729392SStefano Zampini   }
202154729392SStefano Zampini   if (denseB) {
2022d41018fbSJunchao Zhang     localPointsBA  = NULL;
2023d41018fbSJunchao Zhang     remotePointsBA = leafdataB;
2024d41018fbSJunchao Zhang   } else {
20259566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(numLeavesBA, &localPointsBA));
20269566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(numLeavesBA, &remotePointsBA));
202754729392SStefano Zampini     for (i = 0, numLeavesBA = 0; i < numLeavesB; i++) {
202854729392SStefano Zampini       const PetscInt l = localPointsB ? localPointsB[i] : i;
202954729392SStefano Zampini 
203054729392SStefano Zampini       if (leafdataB[l - minleaf].rank == -1) continue;
203154729392SStefano Zampini       remotePointsBA[numLeavesBA] = leafdataB[l - minleaf];
203254729392SStefano Zampini       localPointsBA[numLeavesBA]  = l;
203354729392SStefano Zampini       numLeavesBA++;
203454729392SStefano Zampini     }
20359566063dSJacob Faibussowitsch     PetscCall(PetscFree(leafdataB));
2036d41018fbSJunchao Zhang   }
20379566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)sfA), sfBA));
20389566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(*sfBA));
20399566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(*sfBA, numRootsA, numLeavesBA, localPointsBA, PETSC_OWN_POINTER, remotePointsBA, PETSC_OWN_POINTER));
2040a7b3aa13SAta Mesgarnejad   PetscFunctionReturn(0);
2041a7b3aa13SAta Mesgarnejad }
20421c6ba672SJunchao Zhang 
204304c0ada0SJunchao Zhang /*@
2044cab54364SBarry Smith   PetscSFComposeInverse - Compose a new `PetscSF` by putting the inverse of the second `PetscSF` under the first one
204504c0ada0SJunchao Zhang 
204604c0ada0SJunchao Zhang   Input Parameters:
2047cab54364SBarry Smith + sfA - The first `PetscSF`
2048cab54364SBarry Smith - sfB - The second `PetscSF`
204904c0ada0SJunchao Zhang 
205004c0ada0SJunchao Zhang   Output Parameters:
2051cab54364SBarry Smith . sfBA - The composite `PetscSF`.
205204c0ada0SJunchao Zhang 
205304c0ada0SJunchao Zhang   Level: developer
205404c0ada0SJunchao Zhang 
205554729392SStefano Zampini   Notes:
205654729392SStefano Zampini   Currently, the two SFs must be defined on congruent communicators and they must be true star
205754729392SStefano Zampini   forests, i.e. the same leaf is not connected with different roots. Even more, all roots of the
205854729392SStefano Zampini   second SF must have a degree of 1, i.e., no roots have more than one leaf connected.
205954729392SStefano Zampini 
206054729392SStefano Zampini   sfA's leaf space and sfB's leaf space might be partially overlapped. The composition builds
206154729392SStefano Zampini   a graph with sfA's roots and sfB's roots only when there is a path between them. Unconnected
206254729392SStefano Zampini   roots are not in sfBA. Doing a Bcast on the new SF is equivalent to doing a Bcast on sfA, then
206354729392SStefano Zampini   a Reduce on sfB, on connected roots.
206454729392SStefano Zampini 
2065db781477SPatrick Sanan .seealso: `PetscSF`, `PetscSFCompose()`, `PetscSFGetGraph()`, `PetscSFSetGraph()`, `PetscSFCreateInverseSF()`
206604c0ada0SJunchao Zhang @*/
2067d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFComposeInverse(PetscSF sfA, PetscSF sfB, PetscSF *sfBA)
2068d71ae5a4SJacob Faibussowitsch {
206904c0ada0SJunchao Zhang   const PetscSFNode *remotePointsA, *remotePointsB;
207004c0ada0SJunchao Zhang   PetscSFNode       *remotePointsBA;
207104c0ada0SJunchao Zhang   const PetscInt    *localPointsA, *localPointsB;
207254729392SStefano Zampini   PetscSFNode       *reorderedRemotePointsA = NULL;
207354729392SStefano Zampini   PetscInt           i, numRootsA, numLeavesA, numLeavesBA, numRootsB, numLeavesB, minleaf, maxleaf, *localPointsBA;
20745b0d146aSStefano Zampini   MPI_Op             op;
20755b0d146aSStefano Zampini #if defined(PETSC_USE_64BIT_INDICES)
20765b0d146aSStefano Zampini   PetscBool iswin;
20775b0d146aSStefano Zampini #endif
207804c0ada0SJunchao Zhang 
207904c0ada0SJunchao Zhang   PetscFunctionBegin;
208004c0ada0SJunchao Zhang   PetscValidHeaderSpecific(sfA, PETSCSF_CLASSID, 1);
208104c0ada0SJunchao Zhang   PetscSFCheckGraphSet(sfA, 1);
208204c0ada0SJunchao Zhang   PetscValidHeaderSpecific(sfB, PETSCSF_CLASSID, 2);
208304c0ada0SJunchao Zhang   PetscSFCheckGraphSet(sfB, 2);
208454729392SStefano Zampini   PetscCheckSameComm(sfA, 1, sfB, 2);
208504c0ada0SJunchao Zhang   PetscValidPointer(sfBA, 3);
20869566063dSJacob Faibussowitsch   PetscCall(PetscSFCheckLeavesUnique_Private(sfA));
20879566063dSJacob Faibussowitsch   PetscCall(PetscSFCheckLeavesUnique_Private(sfB));
208854729392SStefano Zampini 
20899566063dSJacob Faibussowitsch   PetscCall(PetscSFGetGraph(sfA, &numRootsA, &numLeavesA, &localPointsA, &remotePointsA));
20909566063dSJacob Faibussowitsch   PetscCall(PetscSFGetGraph(sfB, &numRootsB, &numLeavesB, &localPointsB, &remotePointsB));
20915b0d146aSStefano Zampini 
20925b0d146aSStefano Zampini   /* TODO: Check roots of sfB have degree of 1 */
20935b0d146aSStefano Zampini   /* Once we implement it, we can replace the MPI_MAXLOC
209483df288dSJunchao Zhang      with MPI_REPLACE. In that case, MPI_MAXLOC and MPI_REPLACE have the same effect.
20955b0d146aSStefano Zampini      We use MPI_MAXLOC only to have a deterministic output from this routine if
20965b0d146aSStefano Zampini      the root condition is not meet.
20975b0d146aSStefano Zampini    */
20985b0d146aSStefano Zampini   op = MPI_MAXLOC;
20995b0d146aSStefano Zampini #if defined(PETSC_USE_64BIT_INDICES)
21005b0d146aSStefano Zampini   /* we accept a non-deterministic output (if any) with PETSCSFWINDOW, since MPI_MAXLOC cannot operate on MPIU_2INT with MPI_Accumulate */
21019566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)sfB, PETSCSFWINDOW, &iswin));
210283df288dSJunchao Zhang   if (iswin) op = MPI_REPLACE;
21035b0d146aSStefano Zampini #endif
21045b0d146aSStefano Zampini 
21059566063dSJacob Faibussowitsch   PetscCall(PetscSFGetLeafRange(sfB, &minleaf, &maxleaf));
21069566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(maxleaf - minleaf + 1, &reorderedRemotePointsA));
210754729392SStefano Zampini   for (i = 0; i < maxleaf - minleaf + 1; i++) {
210854729392SStefano Zampini     reorderedRemotePointsA[i].rank  = -1;
210954729392SStefano Zampini     reorderedRemotePointsA[i].index = -1;
211054729392SStefano Zampini   }
211154729392SStefano Zampini   if (localPointsA) {
211254729392SStefano Zampini     for (i = 0; i < numLeavesA; i++) {
211354729392SStefano Zampini       if (localPointsA[i] > maxleaf || localPointsA[i] < minleaf) continue;
211454729392SStefano Zampini       reorderedRemotePointsA[localPointsA[i] - minleaf] = remotePointsA[i];
211554729392SStefano Zampini     }
211654729392SStefano Zampini   } else {
211754729392SStefano Zampini     for (i = 0; i < numLeavesA; i++) {
211854729392SStefano Zampini       if (i > maxleaf || i < minleaf) continue;
211954729392SStefano Zampini       reorderedRemotePointsA[i - minleaf] = remotePointsA[i];
212054729392SStefano Zampini     }
212154729392SStefano Zampini   }
212254729392SStefano Zampini 
21239566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(numRootsB, &localPointsBA));
21249566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(numRootsB, &remotePointsBA));
212554729392SStefano Zampini   for (i = 0; i < numRootsB; i++) {
212654729392SStefano Zampini     remotePointsBA[i].rank  = -1;
212754729392SStefano Zampini     remotePointsBA[i].index = -1;
212854729392SStefano Zampini   }
212954729392SStefano Zampini 
21309566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceBegin(sfB, MPIU_2INT, reorderedRemotePointsA - minleaf, remotePointsBA, op));
21319566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceEnd(sfB, MPIU_2INT, reorderedRemotePointsA - minleaf, remotePointsBA, op));
21329566063dSJacob Faibussowitsch   PetscCall(PetscFree(reorderedRemotePointsA));
213354729392SStefano Zampini   for (i = 0, numLeavesBA = 0; i < numRootsB; i++) {
213454729392SStefano Zampini     if (remotePointsBA[i].rank == -1) continue;
213554729392SStefano Zampini     remotePointsBA[numLeavesBA].rank  = remotePointsBA[i].rank;
213654729392SStefano Zampini     remotePointsBA[numLeavesBA].index = remotePointsBA[i].index;
213754729392SStefano Zampini     localPointsBA[numLeavesBA]        = i;
213854729392SStefano Zampini     numLeavesBA++;
213954729392SStefano Zampini   }
21409566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)sfA), sfBA));
21419566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(*sfBA));
21429566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(*sfBA, numRootsA, numLeavesBA, localPointsBA, PETSC_OWN_POINTER, remotePointsBA, PETSC_OWN_POINTER));
214304c0ada0SJunchao Zhang   PetscFunctionReturn(0);
214404c0ada0SJunchao Zhang }
214504c0ada0SJunchao Zhang 
21461c6ba672SJunchao Zhang /*
2147cab54364SBarry Smith   PetscSFCreateLocalSF_Private - Creates a local `PetscSF` that only has intra-process edges of the global `PetscSF`
21481c6ba672SJunchao Zhang 
21491c6ba672SJunchao Zhang   Input Parameters:
2150cab54364SBarry Smith . sf - The global `PetscSF`
21511c6ba672SJunchao Zhang 
21521c6ba672SJunchao Zhang   Output Parameters:
2153cab54364SBarry Smith . out - The local `PetscSF`
2154cab54364SBarry Smith 
2155cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFCreate()`
21561c6ba672SJunchao Zhang  */
2157d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFCreateLocalSF_Private(PetscSF sf, PetscSF *out)
2158d71ae5a4SJacob Faibussowitsch {
21591c6ba672SJunchao Zhang   MPI_Comm           comm;
21601c6ba672SJunchao Zhang   PetscMPIInt        myrank;
21611c6ba672SJunchao Zhang   const PetscInt    *ilocal;
21621c6ba672SJunchao Zhang   const PetscSFNode *iremote;
21631c6ba672SJunchao Zhang   PetscInt           i, j, nroots, nleaves, lnleaves, *lilocal;
21641c6ba672SJunchao Zhang   PetscSFNode       *liremote;
21651c6ba672SJunchao Zhang   PetscSF            lsf;
21661c6ba672SJunchao Zhang 
21671c6ba672SJunchao Zhang   PetscFunctionBegin;
21681c6ba672SJunchao Zhang   PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1);
2169dbbe0bcdSBarry Smith   if (sf->ops->CreateLocalSF) PetscUseTypeMethod(sf, CreateLocalSF, out);
2170dbbe0bcdSBarry Smith   else {
21711c6ba672SJunchao Zhang     /* Could use PetscSFCreateEmbeddedLeafSF, but since we know the comm is PETSC_COMM_SELF, we can make it fast */
21729566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetComm((PetscObject)sf, &comm));
21739566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_rank(comm, &myrank));
21741c6ba672SJunchao Zhang 
21751c6ba672SJunchao Zhang     /* Find out local edges and build a local SF */
21769566063dSJacob Faibussowitsch     PetscCall(PetscSFGetGraph(sf, &nroots, &nleaves, &ilocal, &iremote));
21779371c9d4SSatish Balay     for (i = lnleaves = 0; i < nleaves; i++) {
21789371c9d4SSatish Balay       if (iremote[i].rank == (PetscInt)myrank) lnleaves++;
21799371c9d4SSatish Balay     }
21809566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(lnleaves, &lilocal));
21819566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(lnleaves, &liremote));
21821c6ba672SJunchao Zhang 
21831c6ba672SJunchao Zhang     for (i = j = 0; i < nleaves; i++) {
21841c6ba672SJunchao Zhang       if (iremote[i].rank == (PetscInt)myrank) {
21851c6ba672SJunchao Zhang         lilocal[j]        = ilocal ? ilocal[i] : i; /* ilocal=NULL for contiguous storage */
21861c6ba672SJunchao Zhang         liremote[j].rank  = 0;                      /* rank in PETSC_COMM_SELF */
21871c6ba672SJunchao Zhang         liremote[j].index = iremote[i].index;
21881c6ba672SJunchao Zhang         j++;
21891c6ba672SJunchao Zhang       }
21901c6ba672SJunchao Zhang     }
21919566063dSJacob Faibussowitsch     PetscCall(PetscSFCreate(PETSC_COMM_SELF, &lsf));
21929566063dSJacob Faibussowitsch     PetscCall(PetscSFSetFromOptions(lsf));
21939566063dSJacob Faibussowitsch     PetscCall(PetscSFSetGraph(lsf, nroots, lnleaves, lilocal, PETSC_OWN_POINTER, liremote, PETSC_OWN_POINTER));
21949566063dSJacob Faibussowitsch     PetscCall(PetscSFSetUp(lsf));
21951c6ba672SJunchao Zhang     *out = lsf;
21961c6ba672SJunchao Zhang   }
21971c6ba672SJunchao Zhang   PetscFunctionReturn(0);
21981c6ba672SJunchao Zhang }
2199dd5b3ca6SJunchao Zhang 
2200dd5b3ca6SJunchao Zhang /* Similar to PetscSFBcast, but only Bcast to leaves on rank 0 */
2201d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFBcastToZero_Private(PetscSF sf, MPI_Datatype unit, const void *rootdata, void *leafdata)
2202d71ae5a4SJacob Faibussowitsch {
2203eb02082bSJunchao Zhang   PetscMemType rootmtype, leafmtype;
2204dd5b3ca6SJunchao Zhang 
2205dd5b3ca6SJunchao Zhang   PetscFunctionBegin;
2206dd5b3ca6SJunchao Zhang   PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1);
22079566063dSJacob Faibussowitsch   PetscCall(PetscSFSetUp(sf));
22089566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(PETSCSF_BcastBegin, sf, 0, 0, 0));
22099566063dSJacob Faibussowitsch   PetscCall(PetscGetMemType(rootdata, &rootmtype));
22109566063dSJacob Faibussowitsch   PetscCall(PetscGetMemType(leafdata, &leafmtype));
2211dbbe0bcdSBarry Smith   PetscUseTypeMethod(sf, BcastToZero, unit, rootmtype, rootdata, leafmtype, leafdata);
22129566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(PETSCSF_BcastBegin, sf, 0, 0, 0));
2213dd5b3ca6SJunchao Zhang   PetscFunctionReturn(0);
2214dd5b3ca6SJunchao Zhang }
2215dd5b3ca6SJunchao Zhang 
2216157edd7aSVaclav Hapla /*@
2217cab54364SBarry Smith   PetscSFConcatenate - concatenate multiple `PetscSF` into one
2218157edd7aSVaclav Hapla 
2219157edd7aSVaclav Hapla   Input Parameters:
2220157edd7aSVaclav Hapla + comm - the communicator
2221cab54364SBarry Smith . nsfs - the number of input `PetscSF`
2222cab54364SBarry Smith . sfs  - the array of input `PetscSF`
2223*1f40158dSVaclav Hapla . rootMode - the root mode specifying how roots are handled
2224cab54364SBarry Smith - leafOffsets - the array of local leaf offsets, one for each input `PetscSF`, or NULL for contiguous storage
2225157edd7aSVaclav Hapla 
2226157edd7aSVaclav Hapla   Output Parameters:
2227cab54364SBarry Smith . newsf - The resulting `PetscSF`
2228157edd7aSVaclav Hapla 
2229*1f40158dSVaclav Hapla   Level: advanced
2230157edd7aSVaclav Hapla 
2231157edd7aSVaclav Hapla   Notes:
2232157edd7aSVaclav Hapla   The communicator of all SFs in sfs must be comm.
2233157edd7aSVaclav Hapla 
2234*1f40158dSVaclav Hapla   Leaves are always concatenated locally, keeping them ordered by the input SF index and original local order.
2235157edd7aSVaclav Hapla   The offsets in leafOffsets are added to the original leaf indices.
2236157edd7aSVaclav Hapla   If all input SFs use contiguous leaf storage (ilocal = NULL), leafOffsets can be passed as NULL as well.
2237157edd7aSVaclav Hapla   In this case, NULL is also passed as ilocal to the resulting SF.
2238157edd7aSVaclav Hapla   If any input SF has non-null ilocal, leafOffsets is needed to distinguish leaves from different input SFs.
2239157edd7aSVaclav Hapla   In this case, user is responsible to provide correct offsets so that the resulting leaves are unique (otherwise an error occurs).
2240157edd7aSVaclav Hapla 
2241*1f40158dSVaclav Hapla   All root modes retain the essential connectivity condition:
2242*1f40158dSVaclav Hapla   If two leaves of the same input SF are connected (sharing the same root), they are also connected in the output SF.
2243*1f40158dSVaclav Hapla   Parameter rootMode controls how the input root spaces are combined.
2244*1f40158dSVaclav Hapla   For `PETSCSF_CONCATENATE_ROOTMODE_SHARED`, the root space is considered the same for each input SF (checked in debug mode) and is also the same in the output SF.
2245*1f40158dSVaclav Hapla   For `PETSCSF_CONCATENATE_ROOTMODE_LOCAL` and `PETSCSF_CONCATENATE_ROOTMODE_GLOBAL`, the input root spaces are taken as separate and joined.
2246*1f40158dSVaclav Hapla   `PETSCSF_CONCATENATE_ROOTMODE_LOCAL` joins the root spaces locally;
2247*1f40158dSVaclav Hapla   roots of sfs[0], sfs[1], sfs[2], ... are joined on each rank separately, ordered by input SF and original local index, and renumbered contiguously.
2248*1f40158dSVaclav Hapla   `PETSCSF_CONCATENATE_ROOTMODE_GLOBAL` joins the root spaces globally;
2249*1f40158dSVaclav Hapla   roots of sfs[0], sfs[1], sfs[2, ... are joined globally, ordered by input SF index and original global index, and renumbered contiguously;
2250*1f40158dSVaclav Hapla   the original root ranks are ignored.
2251*1f40158dSVaclav Hapla   For both `PETSCSF_CONCATENATE_ROOTMODE_LOCAL` and `PETSCSF_CONCATENATE_ROOTMODE_GLOBAL`,
2252*1f40158dSVaclav Hapla   the output SF's root layout is such that the local number of roots is a sum of the input SF's local numbers of roots on each rank to keep the load balancing.
2253*1f40158dSVaclav Hapla   However, for `PETSCSF_CONCATENATE_ROOTMODE_GLOBAL`, that means roots can move to different ranks.
2254*1f40158dSVaclav Hapla 
2255*1f40158dSVaclav Hapla    Example:
2256*1f40158dSVaclav Hapla    We can use src/vec/is/sf/tests/ex18.c to compare the root modes. By running
2257*1f40158dSVaclav Hapla $ make -C $PETSC_DIR/src/vec/is/sf/tests ex18
2258*1f40158dSVaclav Hapla $ for m in {local,global,shared}; do
2259*1f40158dSVaclav Hapla $   mpirun -n 2 $PETSC_DIR/src/vec/is/sf/tests/ex18 -nsfs 2 -n 2 -root_mode $m -sf_view
2260*1f40158dSVaclav Hapla $ done
2261*1f40158dSVaclav Hapla    we generate two identical SFs sf_0 and sf_1,
2262*1f40158dSVaclav Hapla $ PetscSF Object: sf_0 2 MPI processes
2263*1f40158dSVaclav Hapla $   type: basic
2264*1f40158dSVaclav Hapla $   rank #leaves #roots
2265*1f40158dSVaclav Hapla $   [ 0]       4      2
2266*1f40158dSVaclav Hapla $   [ 1]       4      2
2267*1f40158dSVaclav Hapla $   leaves      roots       roots in global numbering
2268*1f40158dSVaclav Hapla $   ( 0,  0) <- ( 0,  0)  =   0
2269*1f40158dSVaclav Hapla $   ( 0,  1) <- ( 0,  1)  =   1
2270*1f40158dSVaclav Hapla $   ( 0,  2) <- ( 1,  0)  =   2
2271*1f40158dSVaclav Hapla $   ( 0,  3) <- ( 1,  1)  =   3
2272*1f40158dSVaclav Hapla $   ( 1,  0) <- ( 0,  0)  =   0
2273*1f40158dSVaclav Hapla $   ( 1,  1) <- ( 0,  1)  =   1
2274*1f40158dSVaclav Hapla $   ( 1,  2) <- ( 1,  0)  =   2
2275*1f40158dSVaclav Hapla $   ( 1,  3) <- ( 1,  1)  =   3
2276*1f40158dSVaclav Hapla    and pass them to `PetscSFConcatenate()` along with different choices of rootMode, yielding different result_sf:
2277*1f40158dSVaclav Hapla $ rootMode = local:
2278*1f40158dSVaclav Hapla $ PetscSF Object: result_sf 2 MPI processes
2279*1f40158dSVaclav Hapla $   type: basic
2280*1f40158dSVaclav Hapla $   rank #leaves #roots
2281*1f40158dSVaclav Hapla $   [ 0]       8      4
2282*1f40158dSVaclav Hapla $   [ 1]       8      4
2283*1f40158dSVaclav Hapla $   leaves      roots       roots in global numbering
2284*1f40158dSVaclav Hapla $   ( 0,  0) <- ( 0,  0)  =   0
2285*1f40158dSVaclav Hapla $   ( 0,  1) <- ( 0,  1)  =   1
2286*1f40158dSVaclav Hapla $   ( 0,  2) <- ( 1,  0)  =   4
2287*1f40158dSVaclav Hapla $   ( 0,  3) <- ( 1,  1)  =   5
2288*1f40158dSVaclav Hapla $   ( 0,  4) <- ( 0,  2)  =   2
2289*1f40158dSVaclav Hapla $   ( 0,  5) <- ( 0,  3)  =   3
2290*1f40158dSVaclav Hapla $   ( 0,  6) <- ( 1,  2)  =   6
2291*1f40158dSVaclav Hapla $   ( 0,  7) <- ( 1,  3)  =   7
2292*1f40158dSVaclav Hapla $   ( 1,  0) <- ( 0,  0)  =   0
2293*1f40158dSVaclav Hapla $   ( 1,  1) <- ( 0,  1)  =   1
2294*1f40158dSVaclav Hapla $   ( 1,  2) <- ( 1,  0)  =   4
2295*1f40158dSVaclav Hapla $   ( 1,  3) <- ( 1,  1)  =   5
2296*1f40158dSVaclav Hapla $   ( 1,  4) <- ( 0,  2)  =   2
2297*1f40158dSVaclav Hapla $   ( 1,  5) <- ( 0,  3)  =   3
2298*1f40158dSVaclav Hapla $   ( 1,  6) <- ( 1,  2)  =   6
2299*1f40158dSVaclav Hapla $   ( 1,  7) <- ( 1,  3)  =   7
2300*1f40158dSVaclav Hapla $
2301*1f40158dSVaclav Hapla $ rootMode = global:
2302*1f40158dSVaclav Hapla $ PetscSF Object: result_sf 2 MPI processes
2303*1f40158dSVaclav Hapla $   type: basic
2304*1f40158dSVaclav Hapla $   rank #leaves #roots
2305*1f40158dSVaclav Hapla $   [ 0]       8      4
2306*1f40158dSVaclav Hapla $   [ 1]       8      4
2307*1f40158dSVaclav Hapla $   leaves      roots       roots in global numbering
2308*1f40158dSVaclav Hapla $   ( 0,  0) <- ( 0,  0)  =   0
2309*1f40158dSVaclav Hapla $   ( 0,  1) <- ( 0,  1)  =   1
2310*1f40158dSVaclav Hapla $   ( 0,  2) <- ( 0,  2)  =   2
2311*1f40158dSVaclav Hapla $   ( 0,  3) <- ( 0,  3)  =   3
2312*1f40158dSVaclav Hapla $   ( 0,  4) <- ( 1,  0)  =   4
2313*1f40158dSVaclav Hapla $   ( 0,  5) <- ( 1,  1)  =   5
2314*1f40158dSVaclav Hapla $   ( 0,  6) <- ( 1,  2)  =   6
2315*1f40158dSVaclav Hapla $   ( 0,  7) <- ( 1,  3)  =   7
2316*1f40158dSVaclav Hapla $   ( 1,  0) <- ( 0,  0)  =   0
2317*1f40158dSVaclav Hapla $   ( 1,  1) <- ( 0,  1)  =   1
2318*1f40158dSVaclav Hapla $   ( 1,  2) <- ( 0,  2)  =   2
2319*1f40158dSVaclav Hapla $   ( 1,  3) <- ( 0,  3)  =   3
2320*1f40158dSVaclav Hapla $   ( 1,  4) <- ( 1,  0)  =   4
2321*1f40158dSVaclav Hapla $   ( 1,  5) <- ( 1,  1)  =   5
2322*1f40158dSVaclav Hapla $   ( 1,  6) <- ( 1,  2)  =   6
2323*1f40158dSVaclav Hapla $   ( 1,  7) <- ( 1,  3)  =   7
2324*1f40158dSVaclav Hapla $
2325*1f40158dSVaclav Hapla $ rootMode = shared:
2326*1f40158dSVaclav Hapla $ PetscSF Object: result_sf 2 MPI processes
2327*1f40158dSVaclav Hapla $   type: basic
2328*1f40158dSVaclav Hapla $   rank #leaves #roots
2329*1f40158dSVaclav Hapla $   [ 0]       8      2
2330*1f40158dSVaclav Hapla $   [ 1]       8      2
2331*1f40158dSVaclav Hapla $   leaves      roots       roots in global numbering
2332*1f40158dSVaclav Hapla $   ( 0,  0) <- ( 0,  0)  =   0
2333*1f40158dSVaclav Hapla $   ( 0,  1) <- ( 0,  1)  =   1
2334*1f40158dSVaclav Hapla $   ( 0,  2) <- ( 1,  0)  =   2
2335*1f40158dSVaclav Hapla $   ( 0,  3) <- ( 1,  1)  =   3
2336*1f40158dSVaclav Hapla $   ( 0,  4) <- ( 0,  0)  =   0
2337*1f40158dSVaclav Hapla $   ( 0,  5) <- ( 0,  1)  =   1
2338*1f40158dSVaclav Hapla $   ( 0,  6) <- ( 1,  0)  =   2
2339*1f40158dSVaclav Hapla $   ( 0,  7) <- ( 1,  1)  =   3
2340*1f40158dSVaclav Hapla $   ( 1,  0) <- ( 0,  0)  =   0
2341*1f40158dSVaclav Hapla $   ( 1,  1) <- ( 0,  1)  =   1
2342*1f40158dSVaclav Hapla $   ( 1,  2) <- ( 1,  0)  =   2
2343*1f40158dSVaclav Hapla $   ( 1,  3) <- ( 1,  1)  =   3
2344*1f40158dSVaclav Hapla $   ( 1,  4) <- ( 0,  0)  =   0
2345*1f40158dSVaclav Hapla $   ( 1,  5) <- ( 0,  1)  =   1
2346*1f40158dSVaclav Hapla $   ( 1,  6) <- ( 1,  0)  =   2
2347*1f40158dSVaclav Hapla $   ( 1,  7) <- ( 1,  1)  =   3
2348*1f40158dSVaclav Hapla 
2349*1f40158dSVaclav Hapla .seealso: `PetscSF`, `PetscSFCompose()`, `PetscSFGetGraph()`, `PetscSFSetGraph()`, `PetscSFConcatenateRootMode`
2350157edd7aSVaclav Hapla @*/
2351*1f40158dSVaclav Hapla PetscErrorCode PetscSFConcatenate(MPI_Comm comm, PetscInt nsfs, PetscSF sfs[], PetscSFConcatenateRootMode rootMode, PetscInt leafOffsets[], PetscSF *newsf)
2352d71ae5a4SJacob Faibussowitsch {
2353157edd7aSVaclav Hapla   PetscInt     i, s, nLeaves, nRoots;
2354157edd7aSVaclav Hapla   PetscInt    *leafArrayOffsets;
2355157edd7aSVaclav Hapla   PetscInt    *ilocal_new;
2356157edd7aSVaclav Hapla   PetscSFNode *iremote_new;
2357157edd7aSVaclav Hapla   PetscBool    all_ilocal_null = PETSC_FALSE;
2358*1f40158dSVaclav Hapla   PetscLayout  glayout         = NULL;
2359*1f40158dSVaclav Hapla   PetscInt    *gremote         = NULL;
2360*1f40158dSVaclav Hapla   PetscMPIInt  rank, size;
2361157edd7aSVaclav Hapla 
2362157edd7aSVaclav Hapla   PetscFunctionBegin;
2363157edd7aSVaclav Hapla   {
2364157edd7aSVaclav Hapla     PetscSF dummy; /* just to have a PetscObject on comm for input validation */
2365157edd7aSVaclav Hapla 
23669566063dSJacob Faibussowitsch     PetscCall(PetscSFCreate(comm, &dummy));
2367157edd7aSVaclav Hapla     PetscValidLogicalCollectiveInt(dummy, nsfs, 2);
2368157edd7aSVaclav Hapla     PetscValidPointer(sfs, 3);
2369157edd7aSVaclav Hapla     for (i = 0; i < nsfs; i++) {
2370157edd7aSVaclav Hapla       PetscValidHeaderSpecific(sfs[i], PETSCSF_CLASSID, 3);
2371157edd7aSVaclav Hapla       PetscCheckSameComm(dummy, 1, sfs[i], 3);
2372157edd7aSVaclav Hapla     }
2373*1f40158dSVaclav Hapla     PetscValidLogicalCollectiveEnum(dummy, rootMode, 4);
2374157edd7aSVaclav Hapla     if (leafOffsets) PetscValidIntPointer(leafOffsets, 5);
2375157edd7aSVaclav Hapla     PetscValidPointer(newsf, 6);
23769566063dSJacob Faibussowitsch     PetscCall(PetscSFDestroy(&dummy));
2377157edd7aSVaclav Hapla   }
2378157edd7aSVaclav Hapla   if (!nsfs) {
23799566063dSJacob Faibussowitsch     PetscCall(PetscSFCreate(comm, newsf));
23809566063dSJacob Faibussowitsch     PetscCall(PetscSFSetGraph(*newsf, 0, 0, NULL, PETSC_OWN_POINTER, NULL, PETSC_OWN_POINTER));
2381157edd7aSVaclav Hapla     PetscFunctionReturn(0);
2382157edd7aSVaclav Hapla   }
23839566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
2384*1f40158dSVaclav Hapla   PetscCallMPI(MPI_Comm_size(comm, &size));
2385157edd7aSVaclav Hapla 
2386*1f40158dSVaclav Hapla   /* Calculate leaf array offsets */
23879566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nsfs + 1, &leafArrayOffsets));
2388157edd7aSVaclav Hapla   leafArrayOffsets[0] = 0;
2389157edd7aSVaclav Hapla   for (s = 0; s < nsfs; s++) {
2390157edd7aSVaclav Hapla     PetscInt nl;
2391157edd7aSVaclav Hapla 
23929566063dSJacob Faibussowitsch     PetscCall(PetscSFGetGraph(sfs[s], NULL, &nl, NULL, NULL));
2393157edd7aSVaclav Hapla     leafArrayOffsets[s + 1] = leafArrayOffsets[s] + nl;
2394157edd7aSVaclav Hapla   }
2395157edd7aSVaclav Hapla   nLeaves = leafArrayOffsets[nsfs];
2396157edd7aSVaclav Hapla 
2397*1f40158dSVaclav Hapla   /* Calculate number of roots */
2398*1f40158dSVaclav Hapla   switch (rootMode) {
2399*1f40158dSVaclav Hapla   case PETSCSF_CONCATENATE_ROOTMODE_SHARED: {
2400*1f40158dSVaclav Hapla     PetscCall(PetscSFGetGraph(sfs[0], &nRoots, NULL, NULL, NULL));
2401*1f40158dSVaclav Hapla     if (PetscDefined(USE_DEBUG)) {
2402*1f40158dSVaclav Hapla       for (s = 1; s < nsfs; s++) {
2403*1f40158dSVaclav Hapla         PetscInt nr;
2404*1f40158dSVaclav Hapla 
2405*1f40158dSVaclav Hapla         PetscCall(PetscSFGetGraph(sfs[s], &nr, NULL, NULL, NULL));
2406*1f40158dSVaclav Hapla         PetscCheck(nr == nRoots, comm, PETSC_ERR_ARG_SIZ, "rootMode = %s but sfs[%" PetscInt_FMT "] has a different number of roots (%" PetscInt_FMT ") than sfs[0] (%" PetscInt_FMT ")", PetscSFConcatenateRootModes[rootMode], s, nr, nRoots);
2407*1f40158dSVaclav Hapla       }
2408*1f40158dSVaclav Hapla     }
2409*1f40158dSVaclav Hapla   } break;
2410*1f40158dSVaclav Hapla   case PETSCSF_CONCATENATE_ROOTMODE_GLOBAL: {
2411*1f40158dSVaclav Hapla     /* Calculate also global layout in this case */
2412*1f40158dSVaclav Hapla     PetscInt    *nls;
2413*1f40158dSVaclav Hapla     PetscLayout *lts;
2414*1f40158dSVaclav Hapla     PetscInt   **inds;
2415*1f40158dSVaclav Hapla     PetscInt     j;
2416*1f40158dSVaclav Hapla     PetscInt     rootOffset = 0;
2417*1f40158dSVaclav Hapla 
2418*1f40158dSVaclav Hapla     PetscCall(PetscCalloc3(nsfs, &lts, nsfs, &nls, nsfs, &inds));
2419*1f40158dSVaclav Hapla     PetscCall(PetscLayoutCreate(comm, &glayout));
2420*1f40158dSVaclav Hapla     glayout->bs = 1;
2421*1f40158dSVaclav Hapla     glayout->n  = 0;
2422*1f40158dSVaclav Hapla     glayout->N  = 0;
2423*1f40158dSVaclav Hapla     for (s = 0; s < nsfs; s++) {
2424*1f40158dSVaclav Hapla       PetscCall(PetscSFGetGraphLayout(sfs[s], &lts[s], &nls[s], NULL, &inds[s]));
2425*1f40158dSVaclav Hapla       glayout->n += lts[s]->n;
2426*1f40158dSVaclav Hapla       glayout->N += lts[s]->N;
2427*1f40158dSVaclav Hapla     }
2428*1f40158dSVaclav Hapla     PetscCall(PetscLayoutSetUp(glayout));
2429*1f40158dSVaclav Hapla     PetscCall(PetscMalloc1(nLeaves, &gremote));
2430*1f40158dSVaclav Hapla     for (s = 0, j = 0; s < nsfs; s++) {
2431*1f40158dSVaclav Hapla       for (i = 0; i < nls[s]; i++, j++) gremote[j] = inds[s][i] + rootOffset;
2432*1f40158dSVaclav Hapla       rootOffset += lts[s]->N;
2433*1f40158dSVaclav Hapla       PetscCall(PetscLayoutDestroy(&lts[s]));
2434*1f40158dSVaclav Hapla       PetscCall(PetscFree(inds[s]));
2435*1f40158dSVaclav Hapla     }
2436*1f40158dSVaclav Hapla     PetscCall(PetscFree3(lts, nls, inds));
2437*1f40158dSVaclav Hapla     nRoots = glayout->N;
2438*1f40158dSVaclav Hapla   } break;
2439*1f40158dSVaclav Hapla   case PETSCSF_CONCATENATE_ROOTMODE_LOCAL:
2440*1f40158dSVaclav Hapla     /* nRoots calculated later in this case */
2441*1f40158dSVaclav Hapla     break;
2442*1f40158dSVaclav Hapla   default:
2443*1f40158dSVaclav Hapla     SETERRQ(comm, PETSC_ERR_ARG_WRONG, "Invalid PetscSFConcatenateRootMode %d", rootMode);
2444*1f40158dSVaclav Hapla   }
2445*1f40158dSVaclav Hapla 
2446157edd7aSVaclav Hapla   if (!leafOffsets) {
2447157edd7aSVaclav Hapla     all_ilocal_null = PETSC_TRUE;
2448157edd7aSVaclav Hapla     for (s = 0; s < nsfs; s++) {
2449157edd7aSVaclav Hapla       const PetscInt *ilocal;
2450157edd7aSVaclav Hapla 
24519566063dSJacob Faibussowitsch       PetscCall(PetscSFGetGraph(sfs[s], NULL, NULL, &ilocal, NULL));
2452157edd7aSVaclav Hapla       if (ilocal) {
2453157edd7aSVaclav Hapla         all_ilocal_null = PETSC_FALSE;
2454157edd7aSVaclav Hapla         break;
2455157edd7aSVaclav Hapla       }
2456157edd7aSVaclav Hapla     }
2457157edd7aSVaclav Hapla     PetscCheck(all_ilocal_null, PETSC_COMM_SELF, PETSC_ERR_ARG_NULL, "leafOffsets can be passed as NULL only if all SFs have ilocal = NULL");
2458157edd7aSVaclav Hapla   }
2459157edd7aSVaclav Hapla 
2460157edd7aSVaclav Hapla   /* Renumber and concatenate local leaves */
2461157edd7aSVaclav Hapla   ilocal_new = NULL;
2462157edd7aSVaclav Hapla   if (!all_ilocal_null) {
24639566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nLeaves, &ilocal_new));
2464157edd7aSVaclav Hapla     for (i = 0; i < nLeaves; i++) ilocal_new[i] = -1;
2465157edd7aSVaclav Hapla     for (s = 0; s < nsfs; s++) {
2466157edd7aSVaclav Hapla       const PetscInt *ilocal;
2467157edd7aSVaclav Hapla       PetscInt       *ilocal_l = &ilocal_new[leafArrayOffsets[s]];
2468157edd7aSVaclav Hapla       PetscInt        i, nleaves_l;
2469157edd7aSVaclav Hapla 
24709566063dSJacob Faibussowitsch       PetscCall(PetscSFGetGraph(sfs[s], NULL, &nleaves_l, &ilocal, NULL));
2471157edd7aSVaclav Hapla       for (i = 0; i < nleaves_l; i++) ilocal_l[i] = (ilocal ? ilocal[i] : i) + leafOffsets[s];
2472157edd7aSVaclav Hapla     }
2473157edd7aSVaclav Hapla   }
2474157edd7aSVaclav Hapla 
2475157edd7aSVaclav Hapla   /* Renumber and concatenate remote roots */
2476*1f40158dSVaclav Hapla   if (rootMode == PETSCSF_CONCATENATE_ROOTMODE_LOCAL || rootMode == PETSCSF_CONCATENATE_ROOTMODE_SHARED) {
2477*1f40158dSVaclav Hapla     PetscInt rootOffset = 0;
2478*1f40158dSVaclav Hapla 
24799566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nLeaves, &iremote_new));
2480157edd7aSVaclav Hapla     for (i = 0; i < nLeaves; i++) {
2481157edd7aSVaclav Hapla       iremote_new[i].rank  = -1;
2482157edd7aSVaclav Hapla       iremote_new[i].index = -1;
2483157edd7aSVaclav Hapla     }
2484157edd7aSVaclav Hapla     for (s = 0; s < nsfs; s++) {
2485157edd7aSVaclav Hapla       PetscInt           i, nl, nr;
2486157edd7aSVaclav Hapla       PetscSF            tmp_sf;
2487157edd7aSVaclav Hapla       const PetscSFNode *iremote;
2488157edd7aSVaclav Hapla       PetscSFNode       *tmp_rootdata;
2489157edd7aSVaclav Hapla       PetscSFNode       *tmp_leafdata = &iremote_new[leafArrayOffsets[s]];
2490157edd7aSVaclav Hapla 
24919566063dSJacob Faibussowitsch       PetscCall(PetscSFGetGraph(sfs[s], &nr, &nl, NULL, &iremote));
24929566063dSJacob Faibussowitsch       PetscCall(PetscSFCreate(comm, &tmp_sf));
2493157edd7aSVaclav Hapla       /* create helper SF with contiguous leaves */
24949566063dSJacob Faibussowitsch       PetscCall(PetscSFSetGraph(tmp_sf, nr, nl, NULL, PETSC_USE_POINTER, (PetscSFNode *)iremote, PETSC_COPY_VALUES));
24959566063dSJacob Faibussowitsch       PetscCall(PetscSFSetUp(tmp_sf));
24969566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(nr, &tmp_rootdata));
2497*1f40158dSVaclav Hapla       if (rootMode == PETSCSF_CONCATENATE_ROOTMODE_LOCAL) {
2498157edd7aSVaclav Hapla         for (i = 0; i < nr; i++) {
2499*1f40158dSVaclav Hapla           tmp_rootdata[i].index = i + rootOffset;
2500157edd7aSVaclav Hapla           tmp_rootdata[i].rank  = (PetscInt)rank;
2501157edd7aSVaclav Hapla         }
2502*1f40158dSVaclav Hapla         rootOffset += nr;
2503*1f40158dSVaclav Hapla       } else {
2504*1f40158dSVaclav Hapla         for (i = 0; i < nr; i++) {
2505*1f40158dSVaclav Hapla           tmp_rootdata[i].index = i;
2506*1f40158dSVaclav Hapla           tmp_rootdata[i].rank  = (PetscInt)rank;
2507*1f40158dSVaclav Hapla         }
2508*1f40158dSVaclav Hapla       }
25099566063dSJacob Faibussowitsch       PetscCall(PetscSFBcastBegin(tmp_sf, MPIU_2INT, tmp_rootdata, tmp_leafdata, MPI_REPLACE));
25109566063dSJacob Faibussowitsch       PetscCall(PetscSFBcastEnd(tmp_sf, MPIU_2INT, tmp_rootdata, tmp_leafdata, MPI_REPLACE));
25119566063dSJacob Faibussowitsch       PetscCall(PetscSFDestroy(&tmp_sf));
25129566063dSJacob Faibussowitsch       PetscCall(PetscFree(tmp_rootdata));
2513157edd7aSVaclav Hapla     }
2514*1f40158dSVaclav Hapla     if (rootMode == PETSCSF_CONCATENATE_ROOTMODE_LOCAL) { nRoots = rootOffset; } // else nRoots already calculated above
2515157edd7aSVaclav Hapla 
2516157edd7aSVaclav Hapla     /* Build the new SF */
25179566063dSJacob Faibussowitsch     PetscCall(PetscSFCreate(comm, newsf));
25189566063dSJacob Faibussowitsch     PetscCall(PetscSFSetGraph(*newsf, nRoots, nLeaves, ilocal_new, PETSC_OWN_POINTER, iremote_new, PETSC_OWN_POINTER));
2519*1f40158dSVaclav Hapla   } else {
2520*1f40158dSVaclav Hapla     /* Build the new SF */
2521*1f40158dSVaclav Hapla     PetscCall(PetscSFCreate(comm, newsf));
2522*1f40158dSVaclav Hapla     PetscCall(PetscSFSetGraphLayout(*newsf, glayout, nLeaves, ilocal_new, PETSC_OWN_POINTER, gremote));
2523*1f40158dSVaclav Hapla   }
25249566063dSJacob Faibussowitsch   PetscCall(PetscSFSetUp(*newsf));
2525*1f40158dSVaclav Hapla   PetscCall(PetscSFViewFromOptions(*newsf, NULL, "-sf_concat_view"));
2526*1f40158dSVaclav Hapla   PetscCall(PetscLayoutDestroy(&glayout));
2527*1f40158dSVaclav Hapla   PetscCall(PetscFree(gremote));
25289566063dSJacob Faibussowitsch   PetscCall(PetscFree(leafArrayOffsets));
2529157edd7aSVaclav Hapla   PetscFunctionReturn(0);
2530157edd7aSVaclav Hapla }
2531