xref: /petsc/src/vec/is/sf/interface/sf.c (revision 20f4b53cbb5e9bd9ef12b76a8697d60d197cda17)
1af0996ceSBarry Smith #include <petsc/private/sfimpl.h> /*I "petscsf.h" I*/
2c4e6a40aSLawrence Mitchell #include <petsc/private/hashseti.h>
353dd6d7dSJunchao Zhang #include <petsc/private/viewerimpl.h>
4eec179cfSJacob Faibussowitsch #include <petsc/private/hashmapi.h>
595fce210SBarry Smith 
67fd2d3dbSJunchao Zhang #if defined(PETSC_HAVE_CUDA)
77fd2d3dbSJunchao Zhang   #include <cuda_runtime.h>
87fd2d3dbSJunchao Zhang #endif
97fd2d3dbSJunchao Zhang 
107fd2d3dbSJunchao Zhang #if defined(PETSC_HAVE_HIP)
117fd2d3dbSJunchao Zhang   #include <hip/hip_runtime.h>
127fd2d3dbSJunchao Zhang #endif
137fd2d3dbSJunchao Zhang 
142abc8c78SJacob Faibussowitsch #if defined(PETSC_CLANG_STATIC_ANALYZER)
152abc8c78SJacob Faibussowitsch void PetscSFCheckGraphSet(PetscSF, int);
162abc8c78SJacob Faibussowitsch #else
1795fce210SBarry Smith   #if defined(PETSC_USE_DEBUG)
187a46b595SBarry Smith     #define PetscSFCheckGraphSet(sf, arg) PetscCheck((sf)->graphset, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Must call PetscSFSetGraph() or PetscSFSetGraphWithPattern() on argument %d \"%s\" before %s()", (arg), #sf, PETSC_FUNCTION_NAME);
1995fce210SBarry Smith   #else
209371c9d4SSatish Balay     #define PetscSFCheckGraphSet(sf, arg) \
219371c9d4SSatish Balay       do { \
229371c9d4SSatish Balay       } while (0)
2395fce210SBarry Smith   #endif
242abc8c78SJacob Faibussowitsch #endif
2595fce210SBarry Smith 
264c8fdceaSLisandro Dalcin const char *const PetscSFDuplicateOptions[]     = {"CONFONLY", "RANKS", "GRAPH", "PetscSFDuplicateOption", "PETSCSF_DUPLICATE_", NULL};
271f40158dSVaclav Hapla const char *const PetscSFConcatenateRootModes[] = {"local", "shared", "global", "PetscSFConcatenateRootMode", "PETSCSF_CONCATENATE_ROOTMODE_", NULL};
2895fce210SBarry Smith 
298af6ec1cSBarry Smith /*@
3095fce210SBarry Smith    PetscSFCreate - create a star forest communication context
3195fce210SBarry Smith 
32d083f849SBarry Smith    Collective
3395fce210SBarry Smith 
344165533cSJose E. Roman    Input Parameter:
3595fce210SBarry Smith .  comm - communicator on which the star forest will operate
3695fce210SBarry Smith 
374165533cSJose E. Roman    Output Parameter:
3895fce210SBarry Smith .  sf - new star forest context
3995fce210SBarry Smith 
4020662ed9SBarry Smith    Options Database Key:
41cab54364SBarry Smith .  -sf_type type - value of type may be
42cab54364SBarry Smith .vb
43cab54364SBarry Smith     basic     -Use MPI persistent Isend/Irecv for communication (Default)
44cab54364SBarry Smith     window    -Use MPI-3 one-sided window for communication
45cab54364SBarry Smith     neighbor  -Use MPI-3 neighborhood collectives for communication
46cab54364SBarry Smith .ve
47dd5b3ca6SJunchao Zhang 
4895fce210SBarry Smith    Level: intermediate
4995fce210SBarry Smith 
50cab54364SBarry Smith    Note:
51cab54364SBarry Smith    When one knows the communication graph is one of the predefined graph, such as `MPI_Alltoall()`, `MPI_Allgatherv()`,
52cab54364SBarry Smith    `MPI_Gatherv()`, one can create a `PetscSF` and then set its graph with `PetscSFSetGraphWithPattern()`. These special
5320662ed9SBarry Smith    `SF`s are optimized and they have better performance than the general `SF`s.
54dd5b3ca6SJunchao Zhang 
5520662ed9SBarry Smith .seealso: `PetscSF`, `PetscSFSetType`, PetscSFSetGraph()`, `PetscSFSetGraphWithPattern()`, `PetscSFDestroy()`
5695fce210SBarry Smith @*/
57d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFCreate(MPI_Comm comm, PetscSF *sf)
58d71ae5a4SJacob Faibussowitsch {
5995fce210SBarry Smith   PetscSF b;
6095fce210SBarry Smith 
6195fce210SBarry Smith   PetscFunctionBegin;
6295fce210SBarry Smith   PetscValidPointer(sf, 2);
639566063dSJacob Faibussowitsch   PetscCall(PetscSFInitializePackage());
6495fce210SBarry Smith 
659566063dSJacob Faibussowitsch   PetscCall(PetscHeaderCreate(b, PETSCSF_CLASSID, "PetscSF", "Star Forest", "PetscSF", comm, PetscSFDestroy, PetscSFView));
6695fce210SBarry Smith 
6795fce210SBarry Smith   b->nroots    = -1;
6895fce210SBarry Smith   b->nleaves   = -1;
6929046d53SLisandro Dalcin   b->minleaf   = PETSC_MAX_INT;
7029046d53SLisandro Dalcin   b->maxleaf   = PETSC_MIN_INT;
7195fce210SBarry Smith   b->nranks    = -1;
7295fce210SBarry Smith   b->rankorder = PETSC_TRUE;
7395fce210SBarry Smith   b->ingroup   = MPI_GROUP_NULL;
7495fce210SBarry Smith   b->outgroup  = MPI_GROUP_NULL;
7595fce210SBarry Smith   b->graphset  = PETSC_FALSE;
7620c24465SJunchao Zhang #if defined(PETSC_HAVE_DEVICE)
7720c24465SJunchao Zhang   b->use_gpu_aware_mpi    = use_gpu_aware_mpi;
7820c24465SJunchao Zhang   b->use_stream_aware_mpi = PETSC_FALSE;
7971438e86SJunchao Zhang   b->unknown_input_stream = PETSC_FALSE;
8027f636e8SJunchao Zhang   #if defined(PETSC_HAVE_KOKKOS) /* Prefer kokkos over cuda*/
8120c24465SJunchao Zhang   b->backend = PETSCSF_BACKEND_KOKKOS;
8227f636e8SJunchao Zhang   #elif defined(PETSC_HAVE_CUDA)
8327f636e8SJunchao Zhang   b->backend = PETSCSF_BACKEND_CUDA;
8459af0bd3SScott Kruger   #elif defined(PETSC_HAVE_HIP)
8559af0bd3SScott Kruger   b->backend = PETSCSF_BACKEND_HIP;
8620c24465SJunchao Zhang   #endif
8771438e86SJunchao Zhang 
8871438e86SJunchao Zhang   #if defined(PETSC_HAVE_NVSHMEM)
8971438e86SJunchao Zhang   b->use_nvshmem     = PETSC_FALSE; /* Default is not to try NVSHMEM */
9071438e86SJunchao Zhang   b->use_nvshmem_get = PETSC_FALSE; /* Default is to use nvshmem_put based protocol */
919566063dSJacob Faibussowitsch   PetscCall(PetscOptionsGetBool(NULL, NULL, "-use_nvshmem", &b->use_nvshmem, NULL));
929566063dSJacob Faibussowitsch   PetscCall(PetscOptionsGetBool(NULL, NULL, "-use_nvshmem_get", &b->use_nvshmem_get, NULL));
9371438e86SJunchao Zhang   #endif
9420c24465SJunchao Zhang #endif
9560c22052SBarry Smith   b->vscat.from_n = -1;
9660c22052SBarry Smith   b->vscat.to_n   = -1;
9760c22052SBarry Smith   b->vscat.unit   = MPIU_SCALAR;
9895fce210SBarry Smith   *sf             = b;
993ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
10095fce210SBarry Smith }
10195fce210SBarry Smith 
10229046d53SLisandro Dalcin /*@
10395fce210SBarry Smith    PetscSFReset - Reset a star forest so that different sizes or neighbors can be used
10495fce210SBarry Smith 
10595fce210SBarry Smith    Collective
10695fce210SBarry Smith 
1074165533cSJose E. Roman    Input Parameter:
10895fce210SBarry Smith .  sf - star forest
10995fce210SBarry Smith 
11095fce210SBarry Smith    Level: advanced
11195fce210SBarry Smith 
112cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFCreate()`, `PetscSFSetGraph()`, `PetscSFDestroy()`
11395fce210SBarry Smith @*/
114d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFReset(PetscSF sf)
115d71ae5a4SJacob Faibussowitsch {
11695fce210SBarry Smith   PetscFunctionBegin;
11795fce210SBarry Smith   PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1);
118dbbe0bcdSBarry Smith   PetscTryTypeMethod(sf, Reset);
11929046d53SLisandro Dalcin   sf->nroots   = -1;
12029046d53SLisandro Dalcin   sf->nleaves  = -1;
12129046d53SLisandro Dalcin   sf->minleaf  = PETSC_MAX_INT;
12229046d53SLisandro Dalcin   sf->maxleaf  = PETSC_MIN_INT;
12395fce210SBarry Smith   sf->mine     = NULL;
12495fce210SBarry Smith   sf->remote   = NULL;
12529046d53SLisandro Dalcin   sf->graphset = PETSC_FALSE;
1269566063dSJacob Faibussowitsch   PetscCall(PetscFree(sf->mine_alloc));
1279566063dSJacob Faibussowitsch   PetscCall(PetscFree(sf->remote_alloc));
12821c688dcSJed Brown   sf->nranks = -1;
1299566063dSJacob Faibussowitsch   PetscCall(PetscFree4(sf->ranks, sf->roffset, sf->rmine, sf->rremote));
13029046d53SLisandro Dalcin   sf->degreeknown = PETSC_FALSE;
1319566063dSJacob Faibussowitsch   PetscCall(PetscFree(sf->degree));
1329566063dSJacob Faibussowitsch   if (sf->ingroup != MPI_GROUP_NULL) PetscCallMPI(MPI_Group_free(&sf->ingroup));
1339566063dSJacob Faibussowitsch   if (sf->outgroup != MPI_GROUP_NULL) PetscCallMPI(MPI_Group_free(&sf->outgroup));
134013b3241SStefano Zampini   if (sf->multi) sf->multi->multi = NULL;
1359566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&sf->multi));
1369566063dSJacob Faibussowitsch   PetscCall(PetscLayoutDestroy(&sf->map));
13771438e86SJunchao Zhang 
13871438e86SJunchao Zhang #if defined(PETSC_HAVE_DEVICE)
1399566063dSJacob Faibussowitsch   for (PetscInt i = 0; i < 2; i++) PetscCall(PetscSFFree(sf, PETSC_MEMTYPE_DEVICE, sf->rmine_d[i]));
14071438e86SJunchao Zhang #endif
14171438e86SJunchao Zhang 
14295fce210SBarry Smith   sf->setupcalled = PETSC_FALSE;
1433ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
14495fce210SBarry Smith }
14595fce210SBarry Smith 
14695fce210SBarry Smith /*@C
147cab54364SBarry Smith    PetscSFSetType - Set the `PetscSF` communication implementation
14895fce210SBarry Smith 
149c3339decSBarry Smith    Collective
15095fce210SBarry Smith 
15195fce210SBarry Smith    Input Parameters:
152cab54364SBarry Smith +  sf - the `PetscSF` context
15395fce210SBarry Smith -  type - a known method
154cab54364SBarry Smith .vb
155cab54364SBarry Smith     PETSCSFWINDOW - MPI-2/3 one-sided
156cab54364SBarry Smith     PETSCSFBASIC - basic implementation using MPI-1 two-sided
157cab54364SBarry Smith .ve
15895fce210SBarry Smith 
15995fce210SBarry Smith    Options Database Key:
16020662ed9SBarry Smith .  -sf_type <type> - Sets the method; for example `basic` or `window` use -help for a list of available methods
161cab54364SBarry Smith 
162cab54364SBarry Smith   Level: intermediate
16395fce210SBarry Smith 
16495fce210SBarry Smith    Notes:
16520662ed9SBarry Smith    See `PetscSFType` for possible values
16695fce210SBarry Smith 
16720662ed9SBarry Smith .seealso: `PetscSF`, `PetscSFType`, `PetscSFCreate()`
16895fce210SBarry Smith @*/
169d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFSetType(PetscSF sf, PetscSFType type)
170d71ae5a4SJacob Faibussowitsch {
17195fce210SBarry Smith   PetscBool match;
1725f80ce2aSJacob Faibussowitsch   PetscErrorCode (*r)(PetscSF);
17395fce210SBarry Smith 
17495fce210SBarry Smith   PetscFunctionBegin;
17595fce210SBarry Smith   PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1);
17695fce210SBarry Smith   PetscValidCharPointer(type, 2);
17795fce210SBarry Smith 
1789566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)sf, type, &match));
1793ba16761SJacob Faibussowitsch   if (match) PetscFunctionReturn(PETSC_SUCCESS);
18095fce210SBarry Smith 
1819566063dSJacob Faibussowitsch   PetscCall(PetscFunctionListFind(PetscSFList, type, &r));
18228b400f6SJacob Faibussowitsch   PetscCheck(r, PETSC_COMM_SELF, PETSC_ERR_ARG_UNKNOWN_TYPE, "Unable to find requested PetscSF type %s", type);
18329046d53SLisandro Dalcin   /* Destroy the previous PetscSF implementation context */
184dbbe0bcdSBarry Smith   PetscTryTypeMethod(sf, Destroy);
1859566063dSJacob Faibussowitsch   PetscCall(PetscMemzero(sf->ops, sizeof(*sf->ops)));
1869566063dSJacob Faibussowitsch   PetscCall(PetscObjectChangeTypeName((PetscObject)sf, type));
1879566063dSJacob Faibussowitsch   PetscCall((*r)(sf));
1883ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
18995fce210SBarry Smith }
19095fce210SBarry Smith 
19129046d53SLisandro Dalcin /*@C
192cab54364SBarry Smith   PetscSFGetType - Get the `PetscSF` communication implementation
19329046d53SLisandro Dalcin 
19429046d53SLisandro Dalcin   Not Collective
19529046d53SLisandro Dalcin 
19629046d53SLisandro Dalcin   Input Parameter:
197cab54364SBarry Smith . sf  - the `PetscSF` context
19829046d53SLisandro Dalcin 
19929046d53SLisandro Dalcin   Output Parameter:
200cab54364SBarry Smith . type - the `PetscSF` type name
20129046d53SLisandro Dalcin 
20229046d53SLisandro Dalcin   Level: intermediate
20329046d53SLisandro Dalcin 
20420662ed9SBarry Smith .seealso: `PetscSF`, `PetscSFType`, `PetscSFSetType()`, `PetscSFCreate()`
20529046d53SLisandro Dalcin @*/
206d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFGetType(PetscSF sf, PetscSFType *type)
207d71ae5a4SJacob Faibussowitsch {
20829046d53SLisandro Dalcin   PetscFunctionBegin;
20929046d53SLisandro Dalcin   PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1);
21029046d53SLisandro Dalcin   PetscValidPointer(type, 2);
21129046d53SLisandro Dalcin   *type = ((PetscObject)sf)->type_name;
2123ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
21329046d53SLisandro Dalcin }
21429046d53SLisandro Dalcin 
2151fb7b255SJunchao Zhang /*@C
21620662ed9SBarry Smith    PetscSFDestroy - destroy a star forest
21795fce210SBarry Smith 
21895fce210SBarry Smith    Collective
21995fce210SBarry Smith 
2204165533cSJose E. Roman    Input Parameter:
22195fce210SBarry Smith .  sf - address of star forest
22295fce210SBarry Smith 
22395fce210SBarry Smith    Level: intermediate
22495fce210SBarry Smith 
22520662ed9SBarry Smith .seealso: `PetscSF`, `PetscSFType`, `PetscSFCreate()`, `PetscSFReset()`
22695fce210SBarry Smith @*/
227d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFDestroy(PetscSF *sf)
228d71ae5a4SJacob Faibussowitsch {
22995fce210SBarry Smith   PetscFunctionBegin;
2303ba16761SJacob Faibussowitsch   if (!*sf) PetscFunctionReturn(PETSC_SUCCESS);
23195fce210SBarry Smith   PetscValidHeaderSpecific((*sf), PETSCSF_CLASSID, 1);
2329371c9d4SSatish Balay   if (--((PetscObject)(*sf))->refct > 0) {
2339371c9d4SSatish Balay     *sf = NULL;
2343ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2359371c9d4SSatish Balay   }
2369566063dSJacob Faibussowitsch   PetscCall(PetscSFReset(*sf));
237dbbe0bcdSBarry Smith   PetscTryTypeMethod((*sf), Destroy);
2389566063dSJacob Faibussowitsch   PetscCall(PetscSFDestroy(&(*sf)->vscat.lsf));
2399566063dSJacob Faibussowitsch   if ((*sf)->vscat.bs > 1) PetscCallMPI(MPI_Type_free(&(*sf)->vscat.unit));
2409566063dSJacob Faibussowitsch   PetscCall(PetscHeaderDestroy(sf));
2413ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
24295fce210SBarry Smith }
24395fce210SBarry Smith 
244d71ae5a4SJacob Faibussowitsch static PetscErrorCode PetscSFCheckGraphValid_Private(PetscSF sf)
245d71ae5a4SJacob Faibussowitsch {
246c4e6a40aSLawrence Mitchell   PetscInt           i, nleaves;
247c4e6a40aSLawrence Mitchell   PetscMPIInt        size;
248c4e6a40aSLawrence Mitchell   const PetscInt    *ilocal;
249c4e6a40aSLawrence Mitchell   const PetscSFNode *iremote;
250c4e6a40aSLawrence Mitchell 
251c4e6a40aSLawrence Mitchell   PetscFunctionBegin;
2523ba16761SJacob Faibussowitsch   if (!sf->graphset || !PetscDefined(USE_DEBUG)) PetscFunctionReturn(PETSC_SUCCESS);
2539566063dSJacob Faibussowitsch   PetscCall(PetscSFGetGraph(sf, NULL, &nleaves, &ilocal, &iremote));
2549566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)sf), &size));
255c4e6a40aSLawrence Mitchell   for (i = 0; i < nleaves; i++) {
256c4e6a40aSLawrence Mitchell     const PetscInt rank   = iremote[i].rank;
257c4e6a40aSLawrence Mitchell     const PetscInt remote = iremote[i].index;
258c4e6a40aSLawrence Mitchell     const PetscInt leaf   = ilocal ? ilocal[i] : i;
259c9cc58a2SBarry Smith     PetscCheck(rank >= 0 && rank < size, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Provided rank (%" PetscInt_FMT ") for remote %" PetscInt_FMT " is invalid, should be in [0, %d)", rank, i, size);
26008401ef6SPierre Jolivet     PetscCheck(remote >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Provided index (%" PetscInt_FMT ") for remote %" PetscInt_FMT " is invalid, should be >= 0", remote, i);
26108401ef6SPierre Jolivet     PetscCheck(leaf >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Provided location (%" PetscInt_FMT ") for leaf %" PetscInt_FMT " is invalid, should be >= 0", leaf, i);
262c4e6a40aSLawrence Mitchell   }
2633ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
264c4e6a40aSLawrence Mitchell }
265c4e6a40aSLawrence Mitchell 
26695fce210SBarry Smith /*@
26720662ed9SBarry Smith    PetscSFSetUp - set up communication structures for a `PetscSF`, after this is done it may be used to perform communication
26895fce210SBarry Smith 
26995fce210SBarry Smith    Collective
27095fce210SBarry Smith 
2714165533cSJose E. Roman    Input Parameter:
27295fce210SBarry Smith .  sf - star forest communication object
27395fce210SBarry Smith 
27495fce210SBarry Smith    Level: beginner
27595fce210SBarry Smith 
27620662ed9SBarry Smith .seealso: `PetscSF`, `PetscSFType`, `PetscSFSetFromOptions()`, `PetscSFSetType()`
27795fce210SBarry Smith @*/
278d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFSetUp(PetscSF sf)
279d71ae5a4SJacob Faibussowitsch {
28095fce210SBarry Smith   PetscFunctionBegin;
28129046d53SLisandro Dalcin   PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1);
28229046d53SLisandro Dalcin   PetscSFCheckGraphSet(sf, 1);
2833ba16761SJacob Faibussowitsch   if (sf->setupcalled) PetscFunctionReturn(PETSC_SUCCESS);
2849566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(PETSCSF_SetUp, sf, 0, 0, 0));
2859566063dSJacob Faibussowitsch   PetscCall(PetscSFCheckGraphValid_Private(sf));
2869566063dSJacob Faibussowitsch   if (!((PetscObject)sf)->type_name) PetscCall(PetscSFSetType(sf, PETSCSFBASIC)); /* Zero all sf->ops */
287dbbe0bcdSBarry Smith   PetscTryTypeMethod(sf, SetUp);
28820c24465SJunchao Zhang #if defined(PETSC_HAVE_CUDA)
28920c24465SJunchao Zhang   if (sf->backend == PETSCSF_BACKEND_CUDA) {
29071438e86SJunchao Zhang     sf->ops->Malloc = PetscSFMalloc_CUDA;
29171438e86SJunchao Zhang     sf->ops->Free   = PetscSFFree_CUDA;
29220c24465SJunchao Zhang   }
29320c24465SJunchao Zhang #endif
29459af0bd3SScott Kruger #if defined(PETSC_HAVE_HIP)
29559af0bd3SScott Kruger   if (sf->backend == PETSCSF_BACKEND_HIP) {
29659af0bd3SScott Kruger     sf->ops->Malloc = PetscSFMalloc_HIP;
29759af0bd3SScott Kruger     sf->ops->Free   = PetscSFFree_HIP;
29859af0bd3SScott Kruger   }
29959af0bd3SScott Kruger #endif
30020c24465SJunchao Zhang 
30159af0bd3SScott Kruger #
30220c24465SJunchao Zhang #if defined(PETSC_HAVE_KOKKOS)
30320c24465SJunchao Zhang   if (sf->backend == PETSCSF_BACKEND_KOKKOS) {
30420c24465SJunchao Zhang     sf->ops->Malloc = PetscSFMalloc_Kokkos;
30520c24465SJunchao Zhang     sf->ops->Free   = PetscSFFree_Kokkos;
30620c24465SJunchao Zhang   }
30720c24465SJunchao Zhang #endif
3089566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(PETSCSF_SetUp, sf, 0, 0, 0));
30995fce210SBarry Smith   sf->setupcalled = PETSC_TRUE;
3103ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
31195fce210SBarry Smith }
31295fce210SBarry Smith 
3138af6ec1cSBarry Smith /*@
314cab54364SBarry Smith    PetscSFSetFromOptions - set `PetscSF` options using the options database
31595fce210SBarry Smith 
31695fce210SBarry Smith    Logically Collective
31795fce210SBarry Smith 
3184165533cSJose E. Roman    Input Parameter:
31995fce210SBarry Smith .  sf - star forest
32095fce210SBarry Smith 
32195fce210SBarry Smith    Options Database Keys:
32220662ed9SBarry Smith +  -sf_type               - implementation type, see `PetscSFSetType()`
32351ccb202SJunchao Zhang .  -sf_rank_order         - sort composite points for gathers and scatters in rank order, gathers are non-deterministic otherwise
32420662ed9SBarry Smith .  -sf_use_default_stream - Assume callers of `PetscSF` computed the input root/leafdata with the default CUDA stream. `PetscSF` will also
32520662ed9SBarry Smith                             use the default stream to process data. Therefore, no stream synchronization is needed between `PetscSF` and its caller (default: true).
32620662ed9SBarry Smith                             If true, this option only works with `-use_gpu_aware_mpi 1`.
32720662ed9SBarry Smith .  -sf_use_stream_aware_mpi  - Assume the underlying MPI is CUDA-stream aware and `PetscSF` won't sync streams for send/recv buffers passed to MPI (default: false).
32820662ed9SBarry Smith                                If true, this option only works with `-use_gpu_aware_mpi 1`.
32995fce210SBarry Smith 
33020662ed9SBarry Smith -  -sf_backend cuda | hip | kokkos -Select the device backend SF uses. Currently `PetscSF` has these backends: cuda, hip and Kokkos.
33159af0bd3SScott Kruger                               On CUDA (HIP) devices, one can choose cuda (hip) or kokkos with the default being kokkos. On other devices,
33220c24465SJunchao Zhang                               the only available is kokkos.
33320c24465SJunchao Zhang 
33495fce210SBarry Smith    Level: intermediate
335cab54364SBarry Smith 
336cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFCreate()`, `PetscSFSetType()`
33795fce210SBarry Smith @*/
338d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFSetFromOptions(PetscSF sf)
339d71ae5a4SJacob Faibussowitsch {
34095fce210SBarry Smith   PetscSFType deft;
34195fce210SBarry Smith   char        type[256];
34295fce210SBarry Smith   PetscBool   flg;
34395fce210SBarry Smith 
34495fce210SBarry Smith   PetscFunctionBegin;
34595fce210SBarry Smith   PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1);
346d0609cedSBarry Smith   PetscObjectOptionsBegin((PetscObject)sf);
34795fce210SBarry Smith   deft = ((PetscObject)sf)->type_name ? ((PetscObject)sf)->type_name : PETSCSFBASIC;
3489566063dSJacob Faibussowitsch   PetscCall(PetscOptionsFList("-sf_type", "PetscSF implementation type", "PetscSFSetType", PetscSFList, deft, type, sizeof(type), &flg));
3499566063dSJacob Faibussowitsch   PetscCall(PetscSFSetType(sf, flg ? type : deft));
3509566063dSJacob Faibussowitsch   PetscCall(PetscOptionsBool("-sf_rank_order", "sort composite points for gathers and scatters in rank order, gathers are non-deterministic otherwise", "PetscSFSetRankOrder", sf->rankorder, &sf->rankorder, NULL));
3517fd2d3dbSJunchao Zhang #if defined(PETSC_HAVE_DEVICE)
35220c24465SJunchao Zhang   {
35320c24465SJunchao Zhang     char      backendstr[32] = {0};
35459af0bd3SScott Kruger     PetscBool isCuda = PETSC_FALSE, isHip = PETSC_FALSE, isKokkos = PETSC_FALSE, set;
35520c24465SJunchao Zhang     /* Change the defaults set in PetscSFCreate() with command line options */
356d5b43468SJose E. Roman     PetscCall(PetscOptionsBool("-sf_unknown_input_stream", "SF root/leafdata is computed on arbitrary streams unknown to SF", "PetscSFSetFromOptions", sf->unknown_input_stream, &sf->unknown_input_stream, NULL));
3579566063dSJacob Faibussowitsch     PetscCall(PetscOptionsBool("-sf_use_stream_aware_mpi", "Assume the underlying MPI is cuda-stream aware", "PetscSFSetFromOptions", sf->use_stream_aware_mpi, &sf->use_stream_aware_mpi, NULL));
3589566063dSJacob Faibussowitsch     PetscCall(PetscOptionsString("-sf_backend", "Select the device backend SF uses", "PetscSFSetFromOptions", NULL, backendstr, sizeof(backendstr), &set));
3599566063dSJacob Faibussowitsch     PetscCall(PetscStrcasecmp("cuda", backendstr, &isCuda));
3609566063dSJacob Faibussowitsch     PetscCall(PetscStrcasecmp("kokkos", backendstr, &isKokkos));
3619566063dSJacob Faibussowitsch     PetscCall(PetscStrcasecmp("hip", backendstr, &isHip));
36259af0bd3SScott Kruger   #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP)
36320c24465SJunchao Zhang     if (isCuda) sf->backend = PETSCSF_BACKEND_CUDA;
36420c24465SJunchao Zhang     else if (isKokkos) sf->backend = PETSCSF_BACKEND_KOKKOS;
36559af0bd3SScott Kruger     else if (isHip) sf->backend = PETSCSF_BACKEND_HIP;
36628b400f6SJacob Faibussowitsch     else PetscCheck(!set, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "-sf_backend %s is not supported. You may choose cuda, hip or kokkos (if installed)", backendstr);
36720c24465SJunchao Zhang   #elif defined(PETSC_HAVE_KOKKOS)
36808401ef6SPierre Jolivet     PetscCheck(!set || isKokkos, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "-sf_backend %s is not supported. You can only choose kokkos", backendstr);
36920c24465SJunchao Zhang   #endif
37020c24465SJunchao Zhang   }
371c2a741eeSJunchao Zhang #endif
372dbbe0bcdSBarry Smith   PetscTryTypeMethod(sf, SetFromOptions, PetscOptionsObject);
373d0609cedSBarry Smith   PetscOptionsEnd();
3743ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
37595fce210SBarry Smith }
37695fce210SBarry Smith 
37729046d53SLisandro Dalcin /*@
37895fce210SBarry Smith    PetscSFSetRankOrder - sort multi-points for gathers and scatters by rank order
37995fce210SBarry Smith 
38095fce210SBarry Smith    Logically Collective
38195fce210SBarry Smith 
3824165533cSJose E. Roman    Input Parameters:
38395fce210SBarry Smith +  sf - star forest
384cab54364SBarry Smith -  flg - `PETSC_TRUE` to sort, `PETSC_FALSE` to skip sorting (lower setup cost, but non-deterministic)
38595fce210SBarry Smith 
38695fce210SBarry Smith    Level: advanced
38795fce210SBarry Smith 
38820662ed9SBarry Smith .seealso: `PetscSF`, `PetscSFType`, `PetscSFGatherBegin()`, `PetscSFScatterBegin()`
38995fce210SBarry Smith @*/
390d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFSetRankOrder(PetscSF sf, PetscBool flg)
391d71ae5a4SJacob Faibussowitsch {
39295fce210SBarry Smith   PetscFunctionBegin;
39395fce210SBarry Smith   PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1);
39495fce210SBarry Smith   PetscValidLogicalCollectiveBool(sf, flg, 2);
39528b400f6SJacob Faibussowitsch   PetscCheck(!sf->multi, PetscObjectComm((PetscObject)sf), PETSC_ERR_ARG_WRONGSTATE, "Rank ordering must be set before first call to PetscSFGatherBegin() or PetscSFScatterBegin()");
39695fce210SBarry Smith   sf->rankorder = flg;
3973ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
39895fce210SBarry Smith }
39995fce210SBarry Smith 
4008dbb0df6SBarry Smith /*@C
40195fce210SBarry Smith    PetscSFSetGraph - Set a parallel star forest
40295fce210SBarry Smith 
40395fce210SBarry Smith    Collective
40495fce210SBarry Smith 
4054165533cSJose E. Roman    Input Parameters:
40695fce210SBarry Smith +  sf - star forest
40795fce210SBarry Smith .  nroots - number of root vertices on the current process (these are possible targets for other process to attach leaves)
40895fce210SBarry Smith .  nleaves - number of leaf vertices on the current process, each of these references a root on any process
40920662ed9SBarry Smith .  ilocal - locations of leaves in leafdata buffers, pass `NULL` for contiguous storage (locations must be >= 0, enforced
410c4e6a40aSLawrence Mitchell during setup in debug mode)
41120662ed9SBarry Smith .  localmode - copy mode for `ilocal`
412c4e6a40aSLawrence Mitchell .  iremote - remote locations of root vertices for each leaf on the current process (locations must be >= 0, enforced
413c4e6a40aSLawrence Mitchell during setup in debug mode)
41420662ed9SBarry Smith -  remotemode - copy mode for `iremote`
41595fce210SBarry Smith 
41695fce210SBarry Smith    Level: intermediate
41795fce210SBarry Smith 
41895452b02SPatrick Sanan    Notes:
41920662ed9SBarry Smith    Leaf indices in `ilocal` must be unique, otherwise an error occurs.
42038ab3f8aSBarry Smith 
42120662ed9SBarry Smith    Input arrays `ilocal` and `iremote` follow the `PetscCopyMode` semantics.
42220662ed9SBarry Smith    In particular, if `localmode` or `remotemode` is `PETSC_OWN_POINTER` or `PETSC_USE_POINTER`,
423db2b9530SVaclav Hapla    PETSc might modify the respective array;
42420662ed9SBarry Smith    if `PETSC_USE_POINTER`, the user must delete the array after `PetscSFDestroy()`.
425cab54364SBarry Smith    Only if `PETSC_COPY_VALUES` is used, the respective array is guaranteed to stay intact and a const array can be passed (but a cast to non-const is needed).
426db2b9530SVaclav Hapla 
427cab54364SBarry Smith    Fortran Note:
42820662ed9SBarry Smith    In Fortran you must use `PETSC_COPY_VALUES` for `localmode` and `remotemode`.
429c4e6a40aSLawrence Mitchell 
430cab54364SBarry Smith    Developer Note:
431db2b9530SVaclav Hapla    We sort leaves to check for duplicates and contiguousness and to find minleaf/maxleaf.
43220662ed9SBarry Smith    This also allows to compare leaf sets of two `PetscSF`s easily.
43372bf8598SVaclav Hapla 
43420662ed9SBarry Smith .seealso: `PetscSF`, `PetscSFType`, `PetscSFCreate()`, `PetscSFView()`, `PetscSFGetGraph()`
43595fce210SBarry Smith @*/
436d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFSetGraph(PetscSF sf, PetscInt nroots, PetscInt nleaves, PetscInt *ilocal, PetscCopyMode localmode, PetscSFNode *iremote, PetscCopyMode remotemode)
437d71ae5a4SJacob Faibussowitsch {
438db2b9530SVaclav Hapla   PetscBool unique, contiguous;
43995fce210SBarry Smith 
44095fce210SBarry Smith   PetscFunctionBegin;
44195fce210SBarry Smith   PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1);
44229046d53SLisandro Dalcin   if (nleaves > 0 && ilocal) PetscValidIntPointer(ilocal, 4);
44329046d53SLisandro Dalcin   if (nleaves > 0) PetscValidPointer(iremote, 6);
44408401ef6SPierre Jolivet   PetscCheck(nroots >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "nroots %" PetscInt_FMT ", cannot be negative", nroots);
44508401ef6SPierre Jolivet   PetscCheck(nleaves >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "nleaves %" PetscInt_FMT ", cannot be negative", nleaves);
4468da24d32SBarry Smith   /* enums may be handled as unsigned by some compilers, NVHPC for example, the int cast
4478da24d32SBarry Smith    * below is to prevent NVHPC from warning about meaningless comparison of unsigned with zero */
4488da24d32SBarry Smith   PetscCheck((int)localmode >= PETSC_COPY_VALUES && localmode <= PETSC_USE_POINTER, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Wrong localmode %d", localmode);
4498da24d32SBarry Smith   PetscCheck((int)remotemode >= PETSC_COPY_VALUES && remotemode <= PETSC_USE_POINTER, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Wrong remotemode %d", remotemode);
45029046d53SLisandro Dalcin 
4512a67d2daSStefano Zampini   if (sf->nroots >= 0) { /* Reset only if graph already set */
4529566063dSJacob Faibussowitsch     PetscCall(PetscSFReset(sf));
4532a67d2daSStefano Zampini   }
4542a67d2daSStefano Zampini 
4559566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(PETSCSF_SetGraph, sf, 0, 0, 0));
45629046d53SLisandro Dalcin 
45795fce210SBarry Smith   sf->nroots  = nroots;
45895fce210SBarry Smith   sf->nleaves = nleaves;
45929046d53SLisandro Dalcin 
460db2b9530SVaclav Hapla   if (localmode == PETSC_COPY_VALUES && ilocal) {
461db2b9530SVaclav Hapla     PetscInt *tlocal = NULL;
462db2b9530SVaclav Hapla 
4639566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nleaves, &tlocal));
4649566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(tlocal, ilocal, nleaves));
465db2b9530SVaclav Hapla     ilocal = tlocal;
466db2b9530SVaclav Hapla   }
467db2b9530SVaclav Hapla   if (remotemode == PETSC_COPY_VALUES) {
468db2b9530SVaclav Hapla     PetscSFNode *tremote = NULL;
469db2b9530SVaclav Hapla 
4709566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nleaves, &tremote));
4719566063dSJacob Faibussowitsch     PetscCall(PetscArraycpy(tremote, iremote, nleaves));
472db2b9530SVaclav Hapla     iremote = tremote;
473db2b9530SVaclav Hapla   }
474db2b9530SVaclav Hapla 
47529046d53SLisandro Dalcin   if (nleaves && ilocal) {
476db2b9530SVaclav Hapla     PetscSFNode work;
477db2b9530SVaclav Hapla 
4789566063dSJacob Faibussowitsch     PetscCall(PetscSortIntWithDataArray(nleaves, ilocal, iremote, sizeof(PetscSFNode), &work));
4799566063dSJacob Faibussowitsch     PetscCall(PetscSortedCheckDupsInt(nleaves, ilocal, &unique));
480db2b9530SVaclav Hapla     unique = PetscNot(unique);
481db2b9530SVaclav Hapla     PetscCheck(sf->allow_multi_leaves || unique, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Input ilocal has duplicate entries which is not allowed for this PetscSF");
482db2b9530SVaclav Hapla     sf->minleaf = ilocal[0];
483db2b9530SVaclav Hapla     sf->maxleaf = ilocal[nleaves - 1];
484db2b9530SVaclav Hapla     contiguous  = (PetscBool)(unique && ilocal[0] == 0 && ilocal[nleaves - 1] == nleaves - 1);
48529046d53SLisandro Dalcin   } else {
48629046d53SLisandro Dalcin     sf->minleaf = 0;
48729046d53SLisandro Dalcin     sf->maxleaf = nleaves - 1;
488db2b9530SVaclav Hapla     unique      = PETSC_TRUE;
489db2b9530SVaclav Hapla     contiguous  = PETSC_TRUE;
49029046d53SLisandro Dalcin   }
49129046d53SLisandro Dalcin 
492db2b9530SVaclav Hapla   if (contiguous) {
493db2b9530SVaclav Hapla     if (localmode == PETSC_USE_POINTER) {
494db2b9530SVaclav Hapla       ilocal = NULL;
495db2b9530SVaclav Hapla     } else {
4969566063dSJacob Faibussowitsch       PetscCall(PetscFree(ilocal));
497db2b9530SVaclav Hapla     }
498db2b9530SVaclav Hapla   }
499db2b9530SVaclav Hapla   sf->mine = ilocal;
500db2b9530SVaclav Hapla   if (localmode == PETSC_USE_POINTER) {
50129046d53SLisandro Dalcin     sf->mine_alloc = NULL;
502db2b9530SVaclav Hapla   } else {
503db2b9530SVaclav Hapla     sf->mine_alloc = ilocal;
50495fce210SBarry Smith   }
505db2b9530SVaclav Hapla   sf->remote = iremote;
506db2b9530SVaclav Hapla   if (remotemode == PETSC_USE_POINTER) {
50729046d53SLisandro Dalcin     sf->remote_alloc = NULL;
508db2b9530SVaclav Hapla   } else {
509db2b9530SVaclav Hapla     sf->remote_alloc = iremote;
51095fce210SBarry Smith   }
5119566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(PETSCSF_SetGraph, sf, 0, 0, 0));
51229046d53SLisandro Dalcin   sf->graphset = PETSC_TRUE;
5133ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
51495fce210SBarry Smith }
51595fce210SBarry Smith 
51629046d53SLisandro Dalcin /*@
517cab54364SBarry Smith   PetscSFSetGraphWithPattern - Sets the graph of a `PetscSF` with a specific pattern
518dd5b3ca6SJunchao Zhang 
519dd5b3ca6SJunchao Zhang   Collective
520dd5b3ca6SJunchao Zhang 
521dd5b3ca6SJunchao Zhang   Input Parameters:
522cab54364SBarry Smith + sf      - The `PetscSF`
523cab54364SBarry Smith . map     - Layout of roots over all processes (insignificant when pattern is `PETSCSF_PATTERN_ALLTOALL`)
524cab54364SBarry Smith - pattern - One of `PETSCSF_PATTERN_ALLGATHER`, `PETSCSF_PATTERN_GATHER`, `PETSCSF_PATTERN_ALLTOALL`
525cab54364SBarry Smith 
526cab54364SBarry Smith   Level: intermediate
527dd5b3ca6SJunchao Zhang 
528dd5b3ca6SJunchao Zhang   Notes:
52920662ed9SBarry Smith   It is easier to explain `PetscSFPattern` using vectors. Suppose we have an MPI vector `x` and its `PetscLayout` is `map`.
53020662ed9SBarry Smith   `n` and `N` are the local and global sizes of `x` respectively.
531dd5b3ca6SJunchao Zhang 
53220662ed9SBarry Smith   With `PETSCSF_PATTERN_ALLGATHER`, the routine creates a graph that if one does `PetscSFBcastBegin()`/`PetscSFBcastEnd()` on it, it will copy `x` to
53320662ed9SBarry Smith   sequential vectors `y` on all MPI processes.
534dd5b3ca6SJunchao Zhang 
53520662ed9SBarry Smith   With `PETSCSF_PATTERN_GATHER`, the routine creates a graph that if one does `PetscSFBcastBegin()`/`PetscSFBcastEnd()` on it, it will copy `x` to a
53620662ed9SBarry Smith   sequential vector `y` on rank 0.
537dd5b3ca6SJunchao Zhang 
53820662ed9SBarry Smith   In above cases, entries of `x` are roots and entries of `y` are leaves.
539dd5b3ca6SJunchao Zhang 
54020662ed9SBarry Smith   With `PETSCSF_PATTERN_ALLTOALL`, map is insignificant. Suppose NP is size of `sf`'s communicator. The routine
541dd5b3ca6SJunchao Zhang   creates a graph that every rank has NP leaves and NP roots. On rank i, its leaf j is connected to root i
542cab54364SBarry Smith   of rank j. Here 0 <=i,j<NP. It is a kind of `MPI_Alltoall()` with sendcount/recvcount being 1. Note that it does
543dd5b3ca6SJunchao Zhang   not mean one can not send multiple items. One just needs to create a new MPI datatype for the mulptiple data
544cab54364SBarry Smith   items with `MPI_Type_contiguous` and use that as the <unit> argument in SF routines.
545dd5b3ca6SJunchao Zhang 
546dd5b3ca6SJunchao Zhang   In this case, roots and leaves are symmetric.
547dd5b3ca6SJunchao Zhang 
548cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFCreate()`, `PetscSFView()`, `PetscSFGetGraph()`
549dd5b3ca6SJunchao Zhang  @*/
550d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFSetGraphWithPattern(PetscSF sf, PetscLayout map, PetscSFPattern pattern)
551d71ae5a4SJacob Faibussowitsch {
552dd5b3ca6SJunchao Zhang   MPI_Comm    comm;
553dd5b3ca6SJunchao Zhang   PetscInt    n, N, res[2];
554dd5b3ca6SJunchao Zhang   PetscMPIInt rank, size;
555dd5b3ca6SJunchao Zhang   PetscSFType type;
556dd5b3ca6SJunchao Zhang 
557dd5b3ca6SJunchao Zhang   PetscFunctionBegin;
5582abc8c78SJacob Faibussowitsch   PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1);
5592abc8c78SJacob Faibussowitsch   if (pattern != PETSCSF_PATTERN_ALLTOALL) PetscValidPointer(map, 2);
5609566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)sf, &comm));
5612c71b3e2SJacob Faibussowitsch   PetscCheck(pattern >= PETSCSF_PATTERN_ALLGATHER && pattern <= PETSCSF_PATTERN_ALLTOALL, comm, PETSC_ERR_ARG_OUTOFRANGE, "Unsupported PetscSFPattern %d", pattern);
5629566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
5639566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(comm, &size));
564dd5b3ca6SJunchao Zhang 
565dd5b3ca6SJunchao Zhang   if (pattern == PETSCSF_PATTERN_ALLTOALL) {
566dd5b3ca6SJunchao Zhang     type = PETSCSFALLTOALL;
5679566063dSJacob Faibussowitsch     PetscCall(PetscLayoutCreate(comm, &sf->map));
5689566063dSJacob Faibussowitsch     PetscCall(PetscLayoutSetLocalSize(sf->map, size));
5699566063dSJacob Faibussowitsch     PetscCall(PetscLayoutSetSize(sf->map, ((PetscInt)size) * size));
5709566063dSJacob Faibussowitsch     PetscCall(PetscLayoutSetUp(sf->map));
571dd5b3ca6SJunchao Zhang   } else {
5729566063dSJacob Faibussowitsch     PetscCall(PetscLayoutGetLocalSize(map, &n));
5739566063dSJacob Faibussowitsch     PetscCall(PetscLayoutGetSize(map, &N));
574dd5b3ca6SJunchao Zhang     res[0] = n;
575dd5b3ca6SJunchao Zhang     res[1] = -n;
576dd5b3ca6SJunchao Zhang     /* Check if n are same over all ranks so that we can optimize it */
5771c2dc1cbSBarry Smith     PetscCall(MPIU_Allreduce(MPI_IN_PLACE, res, 2, MPIU_INT, MPI_MAX, comm));
578dd5b3ca6SJunchao Zhang     if (res[0] == -res[1]) { /* same n */
579dd5b3ca6SJunchao Zhang       type = (pattern == PETSCSF_PATTERN_ALLGATHER) ? PETSCSFALLGATHER : PETSCSFGATHER;
580dd5b3ca6SJunchao Zhang     } else {
581dd5b3ca6SJunchao Zhang       type = (pattern == PETSCSF_PATTERN_ALLGATHER) ? PETSCSFALLGATHERV : PETSCSFGATHERV;
582dd5b3ca6SJunchao Zhang     }
5839566063dSJacob Faibussowitsch     PetscCall(PetscLayoutReference(map, &sf->map));
584dd5b3ca6SJunchao Zhang   }
5859566063dSJacob Faibussowitsch   PetscCall(PetscSFSetType(sf, type));
586dd5b3ca6SJunchao Zhang 
587dd5b3ca6SJunchao Zhang   sf->pattern = pattern;
588dd5b3ca6SJunchao Zhang   sf->mine    = NULL; /* Contiguous */
589dd5b3ca6SJunchao Zhang 
590dd5b3ca6SJunchao Zhang   /* Set nleaves, nroots here in case user calls PetscSFGetGraph, which is legal to call even before PetscSFSetUp is called.
591dd5b3ca6SJunchao Zhang      Also set other easy stuff.
592dd5b3ca6SJunchao Zhang    */
593dd5b3ca6SJunchao Zhang   if (pattern == PETSCSF_PATTERN_ALLGATHER) {
594dd5b3ca6SJunchao Zhang     sf->nleaves = N;
595dd5b3ca6SJunchao Zhang     sf->nroots  = n;
596dd5b3ca6SJunchao Zhang     sf->nranks  = size;
597dd5b3ca6SJunchao Zhang     sf->minleaf = 0;
598dd5b3ca6SJunchao Zhang     sf->maxleaf = N - 1;
599dd5b3ca6SJunchao Zhang   } else if (pattern == PETSCSF_PATTERN_GATHER) {
600dd5b3ca6SJunchao Zhang     sf->nleaves = rank ? 0 : N;
601dd5b3ca6SJunchao Zhang     sf->nroots  = n;
602dd5b3ca6SJunchao Zhang     sf->nranks  = rank ? 0 : size;
603dd5b3ca6SJunchao Zhang     sf->minleaf = 0;
604dd5b3ca6SJunchao Zhang     sf->maxleaf = rank ? -1 : N - 1;
605dd5b3ca6SJunchao Zhang   } else if (pattern == PETSCSF_PATTERN_ALLTOALL) {
606dd5b3ca6SJunchao Zhang     sf->nleaves = size;
607dd5b3ca6SJunchao Zhang     sf->nroots  = size;
608dd5b3ca6SJunchao Zhang     sf->nranks  = size;
609dd5b3ca6SJunchao Zhang     sf->minleaf = 0;
610dd5b3ca6SJunchao Zhang     sf->maxleaf = size - 1;
611dd5b3ca6SJunchao Zhang   }
612dd5b3ca6SJunchao Zhang   sf->ndranks  = 0; /* We do not need to separate out distinguished ranks for patterned graphs to improve communication performance */
613dd5b3ca6SJunchao Zhang   sf->graphset = PETSC_TRUE;
6143ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
615dd5b3ca6SJunchao Zhang }
616dd5b3ca6SJunchao Zhang 
617dd5b3ca6SJunchao Zhang /*@
618cab54364SBarry Smith    PetscSFCreateInverseSF - given a `PetscSF` in which all vertices have degree 1, creates the inverse map
61995fce210SBarry Smith 
62095fce210SBarry Smith    Collective
62195fce210SBarry Smith 
6224165533cSJose E. Roman    Input Parameter:
62395fce210SBarry Smith .  sf - star forest to invert
62495fce210SBarry Smith 
6254165533cSJose E. Roman    Output Parameter:
62620662ed9SBarry Smith .  isf - inverse of `sf`
6274165533cSJose E. Roman 
62895fce210SBarry Smith    Level: advanced
62995fce210SBarry Smith 
63095fce210SBarry Smith    Notes:
63195fce210SBarry Smith    All roots must have degree 1.
63295fce210SBarry Smith 
63395fce210SBarry Smith    The local space may be a permutation, but cannot be sparse.
63495fce210SBarry Smith 
63520662ed9SBarry Smith .seealso: `PetscSF`, `PetscSFType`, `PetscSFSetGraph()`
63695fce210SBarry Smith @*/
637d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFCreateInverseSF(PetscSF sf, PetscSF *isf)
638d71ae5a4SJacob Faibussowitsch {
63995fce210SBarry Smith   PetscMPIInt     rank;
64095fce210SBarry Smith   PetscInt        i, nroots, nleaves, maxlocal, count, *newilocal;
64195fce210SBarry Smith   const PetscInt *ilocal;
64295fce210SBarry Smith   PetscSFNode    *roots, *leaves;
64395fce210SBarry Smith 
64495fce210SBarry Smith   PetscFunctionBegin;
64529046d53SLisandro Dalcin   PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1);
64629046d53SLisandro Dalcin   PetscSFCheckGraphSet(sf, 1);
64729046d53SLisandro Dalcin   PetscValidPointer(isf, 2);
64829046d53SLisandro Dalcin 
6499566063dSJacob Faibussowitsch   PetscCall(PetscSFGetGraph(sf, &nroots, &nleaves, &ilocal, NULL));
65029046d53SLisandro Dalcin   maxlocal = sf->maxleaf + 1; /* TODO: We should use PetscSFGetLeafRange() */
65129046d53SLisandro Dalcin 
6529566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)sf), &rank));
6539566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(nroots, &roots, maxlocal, &leaves));
654ae9aee6dSMatthew G. Knepley   for (i = 0; i < maxlocal; i++) {
65595fce210SBarry Smith     leaves[i].rank  = rank;
65695fce210SBarry Smith     leaves[i].index = i;
65795fce210SBarry Smith   }
65895fce210SBarry Smith   for (i = 0; i < nroots; i++) {
65995fce210SBarry Smith     roots[i].rank  = -1;
66095fce210SBarry Smith     roots[i].index = -1;
66195fce210SBarry Smith   }
6629566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceBegin(sf, MPIU_2INT, leaves, roots, MPI_REPLACE));
6639566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceEnd(sf, MPIU_2INT, leaves, roots, MPI_REPLACE));
66495fce210SBarry Smith 
66595fce210SBarry Smith   /* Check whether our leaves are sparse */
6669371c9d4SSatish Balay   for (i = 0, count = 0; i < nroots; i++)
6679371c9d4SSatish Balay     if (roots[i].rank >= 0) count++;
66895fce210SBarry Smith   if (count == nroots) newilocal = NULL;
6699371c9d4SSatish Balay   else { /* Index for sparse leaves and compact "roots" array (which is to become our leaves). */ PetscCall(PetscMalloc1(count, &newilocal));
67095fce210SBarry Smith     for (i = 0, count = 0; i < nroots; i++) {
67195fce210SBarry Smith       if (roots[i].rank >= 0) {
67295fce210SBarry Smith         newilocal[count]   = i;
67395fce210SBarry Smith         roots[count].rank  = roots[i].rank;
67495fce210SBarry Smith         roots[count].index = roots[i].index;
67595fce210SBarry Smith         count++;
67695fce210SBarry Smith       }
67795fce210SBarry Smith     }
67895fce210SBarry Smith   }
67995fce210SBarry Smith 
6809566063dSJacob Faibussowitsch   PetscCall(PetscSFDuplicate(sf, PETSCSF_DUPLICATE_CONFONLY, isf));
6819566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(*isf, maxlocal, count, newilocal, PETSC_OWN_POINTER, roots, PETSC_COPY_VALUES));
6829566063dSJacob Faibussowitsch   PetscCall(PetscFree2(roots, leaves));
6833ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
68495fce210SBarry Smith }
68595fce210SBarry Smith 
68695fce210SBarry Smith /*@
687cab54364SBarry Smith    PetscSFDuplicate - duplicate a `PetscSF`, optionally preserving rank connectivity and graph
68895fce210SBarry Smith 
68995fce210SBarry Smith    Collective
69095fce210SBarry Smith 
6914165533cSJose E. Roman    Input Parameters:
69295fce210SBarry Smith +  sf - communication object to duplicate
693cab54364SBarry Smith -  opt - `PETSCSF_DUPLICATE_CONFONLY`, `PETSCSF_DUPLICATE_RANKS`, or `PETSCSF_DUPLICATE_GRAPH` (see `PetscSFDuplicateOption`)
69495fce210SBarry Smith 
6954165533cSJose E. Roman    Output Parameter:
69695fce210SBarry Smith .  newsf - new communication object
69795fce210SBarry Smith 
69895fce210SBarry Smith    Level: beginner
69995fce210SBarry Smith 
70020662ed9SBarry Smith .seealso: `PetscSF`, `PetscSFType`, `PetscSFCreate()`, `PetscSFSetType()`, `PetscSFSetGraph()`
70195fce210SBarry Smith @*/
702d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFDuplicate(PetscSF sf, PetscSFDuplicateOption opt, PetscSF *newsf)
703d71ae5a4SJacob Faibussowitsch {
70429046d53SLisandro Dalcin   PetscSFType  type;
70597929ea7SJunchao Zhang   MPI_Datatype dtype = MPIU_SCALAR;
70695fce210SBarry Smith 
70795fce210SBarry Smith   PetscFunctionBegin;
70829046d53SLisandro Dalcin   PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1);
70929046d53SLisandro Dalcin   PetscValidLogicalCollectiveEnum(sf, opt, 2);
71029046d53SLisandro Dalcin   PetscValidPointer(newsf, 3);
7119566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)sf), newsf));
7129566063dSJacob Faibussowitsch   PetscCall(PetscSFGetType(sf, &type));
7139566063dSJacob Faibussowitsch   if (type) PetscCall(PetscSFSetType(*newsf, type));
71435cb6cd3SPierre Jolivet   (*newsf)->allow_multi_leaves = sf->allow_multi_leaves; /* Dup this flag earlier since PetscSFSetGraph() below checks on this flag */
71595fce210SBarry Smith   if (opt == PETSCSF_DUPLICATE_GRAPH) {
716dd5b3ca6SJunchao Zhang     PetscSFCheckGraphSet(sf, 1);
717dd5b3ca6SJunchao Zhang     if (sf->pattern == PETSCSF_PATTERN_GENERAL) {
71895fce210SBarry Smith       PetscInt           nroots, nleaves;
71995fce210SBarry Smith       const PetscInt    *ilocal;
72095fce210SBarry Smith       const PetscSFNode *iremote;
7219566063dSJacob Faibussowitsch       PetscCall(PetscSFGetGraph(sf, &nroots, &nleaves, &ilocal, &iremote));
7229566063dSJacob Faibussowitsch       PetscCall(PetscSFSetGraph(*newsf, nroots, nleaves, (PetscInt *)ilocal, PETSC_COPY_VALUES, (PetscSFNode *)iremote, PETSC_COPY_VALUES));
723dd5b3ca6SJunchao Zhang     } else {
7249566063dSJacob Faibussowitsch       PetscCall(PetscSFSetGraphWithPattern(*newsf, sf->map, sf->pattern));
725dd5b3ca6SJunchao Zhang     }
72695fce210SBarry Smith   }
72797929ea7SJunchao Zhang   /* Since oldtype is committed, so is newtype, according to MPI */
7289566063dSJacob Faibussowitsch   if (sf->vscat.bs > 1) PetscCallMPI(MPI_Type_dup(sf->vscat.unit, &dtype));
72997929ea7SJunchao Zhang   (*newsf)->vscat.bs     = sf->vscat.bs;
73097929ea7SJunchao Zhang   (*newsf)->vscat.unit   = dtype;
73197929ea7SJunchao Zhang   (*newsf)->vscat.to_n   = sf->vscat.to_n;
73297929ea7SJunchao Zhang   (*newsf)->vscat.from_n = sf->vscat.from_n;
73397929ea7SJunchao Zhang   /* Do not copy lsf. Build it on demand since it is rarely used */
73497929ea7SJunchao Zhang 
73520c24465SJunchao Zhang #if defined(PETSC_HAVE_DEVICE)
73620c24465SJunchao Zhang   (*newsf)->backend              = sf->backend;
73771438e86SJunchao Zhang   (*newsf)->unknown_input_stream = sf->unknown_input_stream;
73820c24465SJunchao Zhang   (*newsf)->use_gpu_aware_mpi    = sf->use_gpu_aware_mpi;
73920c24465SJunchao Zhang   (*newsf)->use_stream_aware_mpi = sf->use_stream_aware_mpi;
74020c24465SJunchao Zhang #endif
741dbbe0bcdSBarry Smith   PetscTryTypeMethod(sf, Duplicate, opt, *newsf);
74220c24465SJunchao Zhang   /* Don't do PetscSFSetUp() since the new sf's graph might have not been set. */
7433ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
74495fce210SBarry Smith }
74595fce210SBarry Smith 
74695fce210SBarry Smith /*@C
74795fce210SBarry Smith    PetscSFGetGraph - Get the graph specifying a parallel star forest
74895fce210SBarry Smith 
74995fce210SBarry Smith    Not Collective
75095fce210SBarry Smith 
7514165533cSJose E. Roman    Input Parameter:
75295fce210SBarry Smith .  sf - star forest
75395fce210SBarry Smith 
7544165533cSJose E. Roman    Output Parameters:
75595fce210SBarry Smith +  nroots - number of root vertices on the current process (these are possible targets for other process to attach leaves)
75695fce210SBarry Smith .  nleaves - number of leaf vertices on the current process, each of these references a root on any process
75720662ed9SBarry Smith .  ilocal - locations of leaves in leafdata buffers (if returned value is `NULL`, it means leaves are in contiguous storage)
75895fce210SBarry Smith -  iremote - remote locations of root vertices for each leaf on the current process
75995fce210SBarry Smith 
760cab54364SBarry Smith    Level: intermediate
761cab54364SBarry Smith 
762373e0d91SLisandro Dalcin    Notes:
76320662ed9SBarry Smith      We are not currently requiring that the graph is set, thus returning `nroots` = -1 if it has not been set yet
764373e0d91SLisandro Dalcin 
76520662ed9SBarry Smith      The returned `ilocal` and `iremote` might contain values in different order than the input ones in `PetscSFSetGraph()`
766db2b9530SVaclav Hapla 
7678dbb0df6SBarry Smith    Fortran Notes:
76820662ed9SBarry Smith      The returned `iremote` array is a copy and must be deallocated after use. Consequently, if you
76920662ed9SBarry Smith      want to update the graph, you must call `PetscSFSetGraph()` after modifying the `iremote` array.
7708dbb0df6SBarry Smith 
77120662ed9SBarry Smith      To check for a `NULL` `ilocal` use
7728dbb0df6SBarry Smith $      if (loc(ilocal) == loc(PETSC_NULL_INTEGER)) then
773ca797d7aSLawrence Mitchell 
77420662ed9SBarry Smith .seealso: `PetscSF`, `PetscSFType`, `PetscSFCreate()`, `PetscSFView()`, `PetscSFSetGraph()`
77595fce210SBarry Smith @*/
776d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFGetGraph(PetscSF sf, PetscInt *nroots, PetscInt *nleaves, const PetscInt **ilocal, const PetscSFNode **iremote)
777d71ae5a4SJacob Faibussowitsch {
77895fce210SBarry Smith   PetscFunctionBegin;
77995fce210SBarry Smith   PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1);
780b8dee149SJunchao Zhang   if (sf->ops->GetGraph) {
7819566063dSJacob Faibussowitsch     PetscCall((sf->ops->GetGraph)(sf, nroots, nleaves, ilocal, iremote));
782b8dee149SJunchao Zhang   } else {
78395fce210SBarry Smith     if (nroots) *nroots = sf->nroots;
78495fce210SBarry Smith     if (nleaves) *nleaves = sf->nleaves;
78595fce210SBarry Smith     if (ilocal) *ilocal = sf->mine;
78695fce210SBarry Smith     if (iremote) *iremote = sf->remote;
787b8dee149SJunchao Zhang   }
7883ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
78995fce210SBarry Smith }
79095fce210SBarry Smith 
79129046d53SLisandro Dalcin /*@
79295fce210SBarry Smith    PetscSFGetLeafRange - Get the active leaf ranges
79395fce210SBarry Smith 
79495fce210SBarry Smith    Not Collective
79595fce210SBarry Smith 
7964165533cSJose E. Roman    Input Parameter:
79795fce210SBarry Smith .  sf - star forest
79895fce210SBarry Smith 
7994165533cSJose E. Roman    Output Parameters:
80020662ed9SBarry Smith +  minleaf - minimum active leaf on this process. Returns 0 if there are no leaves.
80120662ed9SBarry Smith -  maxleaf - maximum active leaf on this process. Returns -1 if there are no leaves.
80295fce210SBarry Smith 
80395fce210SBarry Smith    Level: developer
80495fce210SBarry Smith 
80520662ed9SBarry Smith .seealso: `PetscSF`, `PetscSFType`, `PetscSFCreate()`, `PetscSFView()`, `PetscSFSetGraph()`, `PetscSFGetGraph()`
80695fce210SBarry Smith @*/
807d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFGetLeafRange(PetscSF sf, PetscInt *minleaf, PetscInt *maxleaf)
808d71ae5a4SJacob Faibussowitsch {
80995fce210SBarry Smith   PetscFunctionBegin;
81095fce210SBarry Smith   PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1);
81129046d53SLisandro Dalcin   PetscSFCheckGraphSet(sf, 1);
81295fce210SBarry Smith   if (minleaf) *minleaf = sf->minleaf;
81395fce210SBarry Smith   if (maxleaf) *maxleaf = sf->maxleaf;
8143ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
81595fce210SBarry Smith }
81695fce210SBarry Smith 
81795fce210SBarry Smith /*@C
818cab54364SBarry Smith    PetscSFViewFromOptions - View a `PetscSF` based on arguments in the options database
819fe2efc57SMark 
820*20f4b53cSBarry Smith    Collective
821fe2efc57SMark 
822fe2efc57SMark    Input Parameters:
823fe2efc57SMark +  A - the star forest
824cab54364SBarry Smith .  obj - Optional object that provides the prefix for the option names
825736c3998SJose E. Roman -  name - command line option
826fe2efc57SMark 
827fe2efc57SMark    Level: intermediate
828cab54364SBarry Smith 
82920662ed9SBarry Smith   Note:
83020662ed9SBarry Smith   See `PetscObjectViewFromOptions()` for possible `PetscViewer` and `PetscViewerFormat`
83120662ed9SBarry Smith 
832db781477SPatrick Sanan .seealso: `PetscSF`, `PetscSFView`, `PetscObjectViewFromOptions()`, `PetscSFCreate()`
833fe2efc57SMark @*/
834d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFViewFromOptions(PetscSF A, PetscObject obj, const char name[])
835d71ae5a4SJacob Faibussowitsch {
836fe2efc57SMark   PetscFunctionBegin;
837fe2efc57SMark   PetscValidHeaderSpecific(A, PETSCSF_CLASSID, 1);
8389566063dSJacob Faibussowitsch   PetscCall(PetscObjectViewFromOptions((PetscObject)A, obj, name));
8393ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
840fe2efc57SMark }
841fe2efc57SMark 
842fe2efc57SMark /*@C
84395fce210SBarry Smith    PetscSFView - view a star forest
84495fce210SBarry Smith 
84595fce210SBarry Smith    Collective
84695fce210SBarry Smith 
8474165533cSJose E. Roman    Input Parameters:
84895fce210SBarry Smith +  sf - star forest
849cab54364SBarry Smith -  viewer - viewer to display graph, for example `PETSC_VIEWER_STDOUT_WORLD`
85095fce210SBarry Smith 
85195fce210SBarry Smith    Level: beginner
85295fce210SBarry Smith 
853cab54364SBarry Smith .seealso: `PetscSF`, `PetscViewer`, `PetscSFCreate()`, `PetscSFSetGraph()`
85495fce210SBarry Smith @*/
855d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFView(PetscSF sf, PetscViewer viewer)
856d71ae5a4SJacob Faibussowitsch {
85795fce210SBarry Smith   PetscBool         iascii;
85895fce210SBarry Smith   PetscViewerFormat format;
85995fce210SBarry Smith 
86095fce210SBarry Smith   PetscFunctionBegin;
86195fce210SBarry Smith   PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1);
8629566063dSJacob Faibussowitsch   if (!viewer) PetscCall(PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject)sf), &viewer));
86395fce210SBarry Smith   PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2);
86495fce210SBarry Smith   PetscCheckSameComm(sf, 1, viewer, 2);
8659566063dSJacob Faibussowitsch   if (sf->graphset) PetscCall(PetscSFSetUp(sf));
8669566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii));
86753dd6d7dSJunchao Zhang   if (iascii && viewer->format != PETSC_VIEWER_ASCII_MATLAB) {
86895fce210SBarry Smith     PetscMPIInt rank;
86981bfa7aaSJed Brown     PetscInt    ii, i, j;
87095fce210SBarry Smith 
8719566063dSJacob Faibussowitsch     PetscCall(PetscObjectPrintClassNamePrefixType((PetscObject)sf, viewer));
8729566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIPushTab(viewer));
873dd5b3ca6SJunchao Zhang     if (sf->pattern == PETSCSF_PATTERN_GENERAL) {
87480153354SVaclav Hapla       if (!sf->graphset) {
8759566063dSJacob Faibussowitsch         PetscCall(PetscViewerASCIIPrintf(viewer, "PetscSFSetGraph() has not been called yet\n"));
8769566063dSJacob Faibussowitsch         PetscCall(PetscViewerASCIIPopTab(viewer));
8773ba16761SJacob Faibussowitsch         PetscFunctionReturn(PETSC_SUCCESS);
87880153354SVaclav Hapla       }
8799566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)sf), &rank));
8809566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPushSynchronized(viewer));
8819566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Number of roots=%" PetscInt_FMT ", leaves=%" PetscInt_FMT ", remote ranks=%" PetscInt_FMT "\n", rank, sf->nroots, sf->nleaves, sf->nranks));
88248a46eb9SPierre Jolivet       for (i = 0; i < sf->nleaves; i++) PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] %" PetscInt_FMT " <- (%" PetscInt_FMT ",%" PetscInt_FMT ")\n", rank, sf->mine ? sf->mine[i] : i, sf->remote[i].rank, sf->remote[i].index));
8839566063dSJacob Faibussowitsch       PetscCall(PetscViewerFlush(viewer));
8849566063dSJacob Faibussowitsch       PetscCall(PetscViewerGetFormat(viewer, &format));
88595fce210SBarry Smith       if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
88681bfa7aaSJed Brown         PetscMPIInt *tmpranks, *perm;
8879566063dSJacob Faibussowitsch         PetscCall(PetscMalloc2(sf->nranks, &tmpranks, sf->nranks, &perm));
8889566063dSJacob Faibussowitsch         PetscCall(PetscArraycpy(tmpranks, sf->ranks, sf->nranks));
88981bfa7aaSJed Brown         for (i = 0; i < sf->nranks; i++) perm[i] = i;
8909566063dSJacob Faibussowitsch         PetscCall(PetscSortMPIIntWithArray(sf->nranks, tmpranks, perm));
8919566063dSJacob Faibussowitsch         PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Roots referenced by my leaves, by rank\n", rank));
89281bfa7aaSJed Brown         for (ii = 0; ii < sf->nranks; ii++) {
89381bfa7aaSJed Brown           i = perm[ii];
8949566063dSJacob Faibussowitsch           PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] %d: %" PetscInt_FMT " edges\n", rank, sf->ranks[i], sf->roffset[i + 1] - sf->roffset[i]));
89548a46eb9SPierre Jolivet           for (j = sf->roffset[i]; j < sf->roffset[i + 1]; j++) PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d]    %" PetscInt_FMT " <- %" PetscInt_FMT "\n", rank, sf->rmine[j], sf->rremote[j]));
89695fce210SBarry Smith         }
8979566063dSJacob Faibussowitsch         PetscCall(PetscFree2(tmpranks, perm));
89895fce210SBarry Smith       }
8999566063dSJacob Faibussowitsch       PetscCall(PetscViewerFlush(viewer));
9009566063dSJacob Faibussowitsch       PetscCall(PetscViewerASCIIPopSynchronized(viewer));
901dd5b3ca6SJunchao Zhang     }
9029566063dSJacob Faibussowitsch     PetscCall(PetscViewerASCIIPopTab(viewer));
90395fce210SBarry Smith   }
904dbbe0bcdSBarry Smith   PetscTryTypeMethod(sf, View, viewer);
9053ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
90695fce210SBarry Smith }
90795fce210SBarry Smith 
90895fce210SBarry Smith /*@C
909dec1416fSJunchao Zhang    PetscSFGetRootRanks - Get root ranks and number of vertices referenced by leaves on this process
91095fce210SBarry Smith 
91195fce210SBarry Smith    Not Collective
91295fce210SBarry Smith 
9134165533cSJose E. Roman    Input Parameter:
91495fce210SBarry Smith .  sf - star forest
91595fce210SBarry Smith 
9164165533cSJose E. Roman    Output Parameters:
91795fce210SBarry Smith +  nranks - number of ranks referenced by local part
91820662ed9SBarry Smith .  ranks - [`nranks`] array of ranks
91920662ed9SBarry Smith .  roffset - [`nranks`+1] offset in `rmine`/`rremote` for each rank
92020662ed9SBarry Smith .  rmine - [`roffset`[`nranks`]] concatenated array holding local indices referencing each remote rank
92120662ed9SBarry Smith -  rremote - [`roffset`[`nranks`]] concatenated array holding remote indices referenced for each remote rank
92295fce210SBarry Smith 
92395fce210SBarry Smith    Level: developer
92495fce210SBarry Smith 
925cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFGetLeafRanks()`
92695fce210SBarry Smith @*/
927d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFGetRootRanks(PetscSF sf, PetscInt *nranks, const PetscMPIInt **ranks, const PetscInt **roffset, const PetscInt **rmine, const PetscInt **rremote)
928d71ae5a4SJacob Faibussowitsch {
92995fce210SBarry Smith   PetscFunctionBegin;
93095fce210SBarry Smith   PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1);
93128b400f6SJacob Faibussowitsch   PetscCheck(sf->setupcalled, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Must call PetscSFSetUp() before obtaining ranks");
932dec1416fSJunchao Zhang   if (sf->ops->GetRootRanks) {
9339566063dSJacob Faibussowitsch     PetscCall((sf->ops->GetRootRanks)(sf, nranks, ranks, roffset, rmine, rremote));
934dec1416fSJunchao Zhang   } else {
935dec1416fSJunchao Zhang     /* The generic implementation */
93695fce210SBarry Smith     if (nranks) *nranks = sf->nranks;
93795fce210SBarry Smith     if (ranks) *ranks = sf->ranks;
93895fce210SBarry Smith     if (roffset) *roffset = sf->roffset;
93995fce210SBarry Smith     if (rmine) *rmine = sf->rmine;
94095fce210SBarry Smith     if (rremote) *rremote = sf->rremote;
941dec1416fSJunchao Zhang   }
9423ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
94395fce210SBarry Smith }
94495fce210SBarry Smith 
9458750ddebSJunchao Zhang /*@C
9468750ddebSJunchao Zhang    PetscSFGetLeafRanks - Get leaf ranks referencing roots on this process
9478750ddebSJunchao Zhang 
9488750ddebSJunchao Zhang    Not Collective
9498750ddebSJunchao Zhang 
9504165533cSJose E. Roman    Input Parameter:
9518750ddebSJunchao Zhang .  sf - star forest
9528750ddebSJunchao Zhang 
9534165533cSJose E. Roman    Output Parameters:
9548750ddebSJunchao Zhang +  niranks - number of leaf ranks referencing roots on this process
95520662ed9SBarry Smith .  iranks - [`niranks`] array of ranks
95620662ed9SBarry Smith .  ioffset - [`niranks`+1] offset in `irootloc` for each rank
95720662ed9SBarry Smith -  irootloc - [`ioffset`[`niranks`]] concatenated array holding local indices of roots referenced by each leaf rank
9588750ddebSJunchao Zhang 
9598750ddebSJunchao Zhang    Level: developer
9608750ddebSJunchao Zhang 
961cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFGetRootRanks()`
9628750ddebSJunchao Zhang @*/
963d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFGetLeafRanks(PetscSF sf, PetscInt *niranks, const PetscMPIInt **iranks, const PetscInt **ioffset, const PetscInt **irootloc)
964d71ae5a4SJacob Faibussowitsch {
9658750ddebSJunchao Zhang   PetscFunctionBegin;
9668750ddebSJunchao Zhang   PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1);
96728b400f6SJacob Faibussowitsch   PetscCheck(sf->setupcalled, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Must call PetscSFSetUp() before obtaining ranks");
9688750ddebSJunchao Zhang   if (sf->ops->GetLeafRanks) {
9699566063dSJacob Faibussowitsch     PetscCall((sf->ops->GetLeafRanks)(sf, niranks, iranks, ioffset, irootloc));
9708750ddebSJunchao Zhang   } else {
9718750ddebSJunchao Zhang     PetscSFType type;
9729566063dSJacob Faibussowitsch     PetscCall(PetscSFGetType(sf, &type));
97398921bdaSJacob Faibussowitsch     SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "PetscSFGetLeafRanks() is not supported on this StarForest type: %s", type);
9748750ddebSJunchao Zhang   }
9753ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
9768750ddebSJunchao Zhang }
9778750ddebSJunchao Zhang 
978d71ae5a4SJacob Faibussowitsch static PetscBool InList(PetscMPIInt needle, PetscMPIInt n, const PetscMPIInt *list)
979d71ae5a4SJacob Faibussowitsch {
980b5a8e515SJed Brown   PetscInt i;
981b5a8e515SJed Brown   for (i = 0; i < n; i++) {
982b5a8e515SJed Brown     if (needle == list[i]) return PETSC_TRUE;
983b5a8e515SJed Brown   }
984b5a8e515SJed Brown   return PETSC_FALSE;
985b5a8e515SJed Brown }
986b5a8e515SJed Brown 
98795fce210SBarry Smith /*@C
988cab54364SBarry Smith    PetscSFSetUpRanks - Set up data structures associated with ranks; this is for internal use by `PetscSF` implementations.
98921c688dcSJed Brown 
99021c688dcSJed Brown    Collective
99121c688dcSJed Brown 
9924165533cSJose E. Roman    Input Parameters:
993cab54364SBarry Smith +  sf - `PetscSF` to set up; `PetscSFSetGraph()` must have been called
994cab54364SBarry Smith -  dgroup - `MPI_Group` of ranks to be distinguished (e.g., for self or shared memory exchange)
99521c688dcSJed Brown 
99621c688dcSJed Brown    Level: developer
99721c688dcSJed Brown 
998cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFGetRootRanks()`
99921c688dcSJed Brown @*/
1000d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFSetUpRanks(PetscSF sf, MPI_Group dgroup)
1001d71ae5a4SJacob Faibussowitsch {
1002eec179cfSJacob Faibussowitsch   PetscHMapI    table;
1003eec179cfSJacob Faibussowitsch   PetscHashIter pos;
1004b5a8e515SJed Brown   PetscMPIInt   size, groupsize, *groupranks;
1005247e8311SStefano Zampini   PetscInt     *rcount, *ranks;
1006247e8311SStefano Zampini   PetscInt      i, irank = -1, orank = -1;
100721c688dcSJed Brown 
100821c688dcSJed Brown   PetscFunctionBegin;
100921c688dcSJed Brown   PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1);
101029046d53SLisandro Dalcin   PetscSFCheckGraphSet(sf, 1);
10119566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)sf), &size));
1012eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapICreateWithSize(10, &table));
101321c688dcSJed Brown   for (i = 0; i < sf->nleaves; i++) {
101421c688dcSJed Brown     /* Log 1-based rank */
1015eec179cfSJacob Faibussowitsch     PetscCall(PetscHMapISetWithMode(table, sf->remote[i].rank + 1, 1, ADD_VALUES));
101621c688dcSJed Brown   }
1017eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIGetSize(table, &sf->nranks));
10189566063dSJacob Faibussowitsch   PetscCall(PetscMalloc4(sf->nranks, &sf->ranks, sf->nranks + 1, &sf->roffset, sf->nleaves, &sf->rmine, sf->nleaves, &sf->rremote));
10199566063dSJacob Faibussowitsch   PetscCall(PetscMalloc2(sf->nranks, &rcount, sf->nranks, &ranks));
1020eec179cfSJacob Faibussowitsch   PetscHashIterBegin(table, pos);
102121c688dcSJed Brown   for (i = 0; i < sf->nranks; i++) {
1022eec179cfSJacob Faibussowitsch     PetscHashIterGetKey(table, pos, ranks[i]);
1023eec179cfSJacob Faibussowitsch     PetscHashIterGetVal(table, pos, rcount[i]);
1024eec179cfSJacob Faibussowitsch     PetscHashIterNext(table, pos);
102521c688dcSJed Brown     ranks[i]--; /* Convert back to 0-based */
102621c688dcSJed Brown   }
1027eec179cfSJacob Faibussowitsch   PetscCall(PetscHMapIDestroy(&table));
1028b5a8e515SJed Brown 
1029b5a8e515SJed Brown   /* We expect that dgroup is reliably "small" while nranks could be large */
1030b5a8e515SJed Brown   {
10317fb8a5e4SKarl Rupp     MPI_Group    group = MPI_GROUP_NULL;
1032b5a8e515SJed Brown     PetscMPIInt *dgroupranks;
10339566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_group(PetscObjectComm((PetscObject)sf), &group));
10349566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Group_size(dgroup, &groupsize));
10359566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(groupsize, &dgroupranks));
10369566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(groupsize, &groupranks));
1037b5a8e515SJed Brown     for (i = 0; i < groupsize; i++) dgroupranks[i] = i;
10389566063dSJacob Faibussowitsch     if (groupsize) PetscCallMPI(MPI_Group_translate_ranks(dgroup, groupsize, dgroupranks, group, groupranks));
10399566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Group_free(&group));
10409566063dSJacob Faibussowitsch     PetscCall(PetscFree(dgroupranks));
1041b5a8e515SJed Brown   }
1042b5a8e515SJed Brown 
1043b5a8e515SJed Brown   /* Partition ranks[] into distinguished (first sf->ndranks) followed by non-distinguished */
1044b5a8e515SJed Brown   for (sf->ndranks = 0, i = sf->nranks; sf->ndranks < i;) {
1045b5a8e515SJed Brown     for (i--; sf->ndranks < i; i--) { /* Scan i backward looking for distinguished rank */
1046b5a8e515SJed Brown       if (InList(ranks[i], groupsize, groupranks)) break;
1047b5a8e515SJed Brown     }
1048b5a8e515SJed Brown     for (; sf->ndranks <= i; sf->ndranks++) { /* Scan sf->ndranks forward looking for non-distinguished rank */
1049b5a8e515SJed Brown       if (!InList(ranks[sf->ndranks], groupsize, groupranks)) break;
1050b5a8e515SJed Brown     }
1051b5a8e515SJed Brown     if (sf->ndranks < i) { /* Swap ranks[sf->ndranks] with ranks[i] */
1052b5a8e515SJed Brown       PetscInt tmprank, tmpcount;
1053247e8311SStefano Zampini 
1054b5a8e515SJed Brown       tmprank             = ranks[i];
1055b5a8e515SJed Brown       tmpcount            = rcount[i];
1056b5a8e515SJed Brown       ranks[i]            = ranks[sf->ndranks];
1057b5a8e515SJed Brown       rcount[i]           = rcount[sf->ndranks];
1058b5a8e515SJed Brown       ranks[sf->ndranks]  = tmprank;
1059b5a8e515SJed Brown       rcount[sf->ndranks] = tmpcount;
1060b5a8e515SJed Brown       sf->ndranks++;
1061b5a8e515SJed Brown     }
1062b5a8e515SJed Brown   }
10639566063dSJacob Faibussowitsch   PetscCall(PetscFree(groupranks));
10649566063dSJacob Faibussowitsch   PetscCall(PetscSortIntWithArray(sf->ndranks, ranks, rcount));
10659566063dSJacob Faibussowitsch   PetscCall(PetscSortIntWithArray(sf->nranks - sf->ndranks, ranks + sf->ndranks, rcount + sf->ndranks));
106621c688dcSJed Brown   sf->roffset[0] = 0;
106721c688dcSJed Brown   for (i = 0; i < sf->nranks; i++) {
10689566063dSJacob Faibussowitsch     PetscCall(PetscMPIIntCast(ranks[i], sf->ranks + i));
106921c688dcSJed Brown     sf->roffset[i + 1] = sf->roffset[i] + rcount[i];
107021c688dcSJed Brown     rcount[i]          = 0;
107121c688dcSJed Brown   }
1072247e8311SStefano Zampini   for (i = 0, irank = -1, orank = -1; i < sf->nleaves; i++) {
1073247e8311SStefano Zampini     /* short circuit */
1074247e8311SStefano Zampini     if (orank != sf->remote[i].rank) {
107521c688dcSJed Brown       /* Search for index of iremote[i].rank in sf->ranks */
10769566063dSJacob Faibussowitsch       PetscCall(PetscFindMPIInt(sf->remote[i].rank, sf->ndranks, sf->ranks, &irank));
1077b5a8e515SJed Brown       if (irank < 0) {
10789566063dSJacob Faibussowitsch         PetscCall(PetscFindMPIInt(sf->remote[i].rank, sf->nranks - sf->ndranks, sf->ranks + sf->ndranks, &irank));
1079b5a8e515SJed Brown         if (irank >= 0) irank += sf->ndranks;
108021c688dcSJed Brown       }
1081247e8311SStefano Zampini       orank = sf->remote[i].rank;
1082247e8311SStefano Zampini     }
108308401ef6SPierre Jolivet     PetscCheck(irank >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Could not find rank %" PetscInt_FMT " in array", sf->remote[i].rank);
108421c688dcSJed Brown     sf->rmine[sf->roffset[irank] + rcount[irank]]   = sf->mine ? sf->mine[i] : i;
108521c688dcSJed Brown     sf->rremote[sf->roffset[irank] + rcount[irank]] = sf->remote[i].index;
108621c688dcSJed Brown     rcount[irank]++;
108721c688dcSJed Brown   }
10889566063dSJacob Faibussowitsch   PetscCall(PetscFree2(rcount, ranks));
10893ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
109021c688dcSJed Brown }
109121c688dcSJed Brown 
109221c688dcSJed Brown /*@C
109395fce210SBarry Smith    PetscSFGetGroups - gets incoming and outgoing process groups
109495fce210SBarry Smith 
109595fce210SBarry Smith    Collective
109695fce210SBarry Smith 
10974165533cSJose E. Roman    Input Parameter:
109895fce210SBarry Smith .  sf - star forest
109995fce210SBarry Smith 
11004165533cSJose E. Roman    Output Parameters:
110195fce210SBarry Smith +  incoming - group of origin processes for incoming edges (leaves that reference my roots)
110295fce210SBarry Smith -  outgoing - group of destination processes for outgoing edges (roots that I reference)
110395fce210SBarry Smith 
110495fce210SBarry Smith    Level: developer
110595fce210SBarry Smith 
1106cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFGetWindow()`, `PetscSFRestoreWindow()`
110795fce210SBarry Smith @*/
1108d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFGetGroups(PetscSF sf, MPI_Group *incoming, MPI_Group *outgoing)
1109d71ae5a4SJacob Faibussowitsch {
11107fb8a5e4SKarl Rupp   MPI_Group group = MPI_GROUP_NULL;
111195fce210SBarry Smith 
111295fce210SBarry Smith   PetscFunctionBegin;
111308401ef6SPierre Jolivet   PetscCheck(sf->nranks >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Must call PetscSFSetUpRanks() before obtaining groups");
111495fce210SBarry Smith   if (sf->ingroup == MPI_GROUP_NULL) {
111595fce210SBarry Smith     PetscInt        i;
111695fce210SBarry Smith     const PetscInt *indegree;
111795fce210SBarry Smith     PetscMPIInt     rank, *outranks, *inranks;
111895fce210SBarry Smith     PetscSFNode    *remote;
111995fce210SBarry Smith     PetscSF         bgcount;
112095fce210SBarry Smith 
112195fce210SBarry Smith     /* Compute the number of incoming ranks */
11229566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(sf->nranks, &remote));
112395fce210SBarry Smith     for (i = 0; i < sf->nranks; i++) {
112495fce210SBarry Smith       remote[i].rank  = sf->ranks[i];
112595fce210SBarry Smith       remote[i].index = 0;
112695fce210SBarry Smith     }
11279566063dSJacob Faibussowitsch     PetscCall(PetscSFDuplicate(sf, PETSCSF_DUPLICATE_CONFONLY, &bgcount));
11289566063dSJacob Faibussowitsch     PetscCall(PetscSFSetGraph(bgcount, 1, sf->nranks, NULL, PETSC_COPY_VALUES, remote, PETSC_OWN_POINTER));
11299566063dSJacob Faibussowitsch     PetscCall(PetscSFComputeDegreeBegin(bgcount, &indegree));
11309566063dSJacob Faibussowitsch     PetscCall(PetscSFComputeDegreeEnd(bgcount, &indegree));
113195fce210SBarry Smith     /* Enumerate the incoming ranks */
11329566063dSJacob Faibussowitsch     PetscCall(PetscMalloc2(indegree[0], &inranks, sf->nranks, &outranks));
11339566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)sf), &rank));
113495fce210SBarry Smith     for (i = 0; i < sf->nranks; i++) outranks[i] = rank;
11359566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherBegin(bgcount, MPI_INT, outranks, inranks));
11369566063dSJacob Faibussowitsch     PetscCall(PetscSFGatherEnd(bgcount, MPI_INT, outranks, inranks));
11379566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_group(PetscObjectComm((PetscObject)sf), &group));
11389566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Group_incl(group, indegree[0], inranks, &sf->ingroup));
11399566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Group_free(&group));
11409566063dSJacob Faibussowitsch     PetscCall(PetscFree2(inranks, outranks));
11419566063dSJacob Faibussowitsch     PetscCall(PetscSFDestroy(&bgcount));
114295fce210SBarry Smith   }
114395fce210SBarry Smith   *incoming = sf->ingroup;
114495fce210SBarry Smith 
114595fce210SBarry Smith   if (sf->outgroup == MPI_GROUP_NULL) {
11469566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_group(PetscObjectComm((PetscObject)sf), &group));
11479566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Group_incl(group, sf->nranks, sf->ranks, &sf->outgroup));
11489566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Group_free(&group));
114995fce210SBarry Smith   }
115095fce210SBarry Smith   *outgoing = sf->outgroup;
11513ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
115295fce210SBarry Smith }
115395fce210SBarry Smith 
115429046d53SLisandro Dalcin /*@
1155cab54364SBarry Smith    PetscSFGetMultiSF - gets the inner `PetscSF` implementing gathers and scatters
115695fce210SBarry Smith 
115795fce210SBarry Smith    Collective
115895fce210SBarry Smith 
11594165533cSJose E. Roman    Input Parameter:
116095fce210SBarry Smith .  sf - star forest that may contain roots with 0 or with more than 1 vertex
116195fce210SBarry Smith 
11624165533cSJose E. Roman    Output Parameter:
116395fce210SBarry Smith .  multi - star forest with split roots, such that each root has degree exactly 1
116495fce210SBarry Smith 
116595fce210SBarry Smith    Level: developer
116695fce210SBarry Smith 
1167cab54364SBarry Smith    Note:
1168cab54364SBarry Smith    In most cases, users should use `PetscSFGatherBegin()` and `PetscSFScatterBegin()` instead of manipulating multi
116995fce210SBarry Smith    directly. Since multi satisfies the stronger condition that each entry in the global space has exactly one incoming
117095fce210SBarry Smith    edge, it is a candidate for future optimization that might involve its removal.
117195fce210SBarry Smith 
1172cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFSetGraph()`, `PetscSFGatherBegin()`, `PetscSFScatterBegin()`, `PetscSFComputeMultiRootOriginalNumbering()`
117395fce210SBarry Smith @*/
1174d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFGetMultiSF(PetscSF sf, PetscSF *multi)
1175d71ae5a4SJacob Faibussowitsch {
117695fce210SBarry Smith   PetscFunctionBegin;
117795fce210SBarry Smith   PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1);
117895fce210SBarry Smith   PetscValidPointer(multi, 2);
117995fce210SBarry Smith   if (sf->nroots < 0) { /* Graph has not been set yet; why do we need this? */
11809566063dSJacob Faibussowitsch     PetscCall(PetscSFDuplicate(sf, PETSCSF_DUPLICATE_RANKS, &sf->multi));
118195fce210SBarry Smith     *multi           = sf->multi;
1182013b3241SStefano Zampini     sf->multi->multi = sf->multi;
11833ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
118495fce210SBarry Smith   }
118595fce210SBarry Smith   if (!sf->multi) {
118695fce210SBarry Smith     const PetscInt *indegree;
11879837ea96SMatthew G. Knepley     PetscInt        i, *inoffset, *outones, *outoffset, maxlocal;
118895fce210SBarry Smith     PetscSFNode    *remote;
118929046d53SLisandro Dalcin     maxlocal = sf->maxleaf + 1; /* TODO: We should use PetscSFGetLeafRange() */
11909566063dSJacob Faibussowitsch     PetscCall(PetscSFComputeDegreeBegin(sf, &indegree));
11919566063dSJacob Faibussowitsch     PetscCall(PetscSFComputeDegreeEnd(sf, &indegree));
11929566063dSJacob Faibussowitsch     PetscCall(PetscMalloc3(sf->nroots + 1, &inoffset, maxlocal, &outones, maxlocal, &outoffset));
119395fce210SBarry Smith     inoffset[0] = 0;
119495fce210SBarry Smith     for (i = 0; i < sf->nroots; i++) inoffset[i + 1] = inoffset[i] + indegree[i];
11959837ea96SMatthew G. Knepley     for (i = 0; i < maxlocal; i++) outones[i] = 1;
11969566063dSJacob Faibussowitsch     PetscCall(PetscSFFetchAndOpBegin(sf, MPIU_INT, inoffset, outones, outoffset, MPI_SUM));
11979566063dSJacob Faibussowitsch     PetscCall(PetscSFFetchAndOpEnd(sf, MPIU_INT, inoffset, outones, outoffset, MPI_SUM));
119895fce210SBarry Smith     for (i = 0; i < sf->nroots; i++) inoffset[i] -= indegree[i]; /* Undo the increment */
119976bd3646SJed Brown     if (PetscDefined(USE_DEBUG)) {                               /* Check that the expected number of increments occurred */
1200ad540459SPierre Jolivet       for (i = 0; i < sf->nroots; i++) PetscCheck(inoffset[i] + indegree[i] == inoffset[i + 1], PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect result after PetscSFFetchAndOp");
120176bd3646SJed Brown     }
12029566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(sf->nleaves, &remote));
120395fce210SBarry Smith     for (i = 0; i < sf->nleaves; i++) {
120495fce210SBarry Smith       remote[i].rank  = sf->remote[i].rank;
120538e7336fSToby Isaac       remote[i].index = outoffset[sf->mine ? sf->mine[i] : i];
120695fce210SBarry Smith     }
12079566063dSJacob Faibussowitsch     PetscCall(PetscSFDuplicate(sf, PETSCSF_DUPLICATE_RANKS, &sf->multi));
1208013b3241SStefano Zampini     sf->multi->multi = sf->multi;
12099566063dSJacob Faibussowitsch     PetscCall(PetscSFSetGraph(sf->multi, inoffset[sf->nroots], sf->nleaves, sf->mine, PETSC_COPY_VALUES, remote, PETSC_OWN_POINTER));
121095fce210SBarry Smith     if (sf->rankorder) { /* Sort the ranks */
121195fce210SBarry Smith       PetscMPIInt  rank;
121295fce210SBarry Smith       PetscInt    *inranks, *newoffset, *outranks, *newoutoffset, *tmpoffset, maxdegree;
121395fce210SBarry Smith       PetscSFNode *newremote;
12149566063dSJacob Faibussowitsch       PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)sf), &rank));
121595fce210SBarry Smith       for (i = 0, maxdegree = 0; i < sf->nroots; i++) maxdegree = PetscMax(maxdegree, indegree[i]);
12169566063dSJacob Faibussowitsch       PetscCall(PetscMalloc5(sf->multi->nroots, &inranks, sf->multi->nroots, &newoffset, maxlocal, &outranks, maxlocal, &newoutoffset, maxdegree, &tmpoffset));
12179837ea96SMatthew G. Knepley       for (i = 0; i < maxlocal; i++) outranks[i] = rank;
12189566063dSJacob Faibussowitsch       PetscCall(PetscSFReduceBegin(sf->multi, MPIU_INT, outranks, inranks, MPI_REPLACE));
12199566063dSJacob Faibussowitsch       PetscCall(PetscSFReduceEnd(sf->multi, MPIU_INT, outranks, inranks, MPI_REPLACE));
122095fce210SBarry Smith       /* Sort the incoming ranks at each vertex, build the inverse map */
122195fce210SBarry Smith       for (i = 0; i < sf->nroots; i++) {
122295fce210SBarry Smith         PetscInt j;
122395fce210SBarry Smith         for (j = 0; j < indegree[i]; j++) tmpoffset[j] = j;
12249566063dSJacob Faibussowitsch         PetscCall(PetscSortIntWithArray(indegree[i], inranks + inoffset[i], tmpoffset));
122595fce210SBarry Smith         for (j = 0; j < indegree[i]; j++) newoffset[inoffset[i] + tmpoffset[j]] = inoffset[i] + j;
122695fce210SBarry Smith       }
12279566063dSJacob Faibussowitsch       PetscCall(PetscSFBcastBegin(sf->multi, MPIU_INT, newoffset, newoutoffset, MPI_REPLACE));
12289566063dSJacob Faibussowitsch       PetscCall(PetscSFBcastEnd(sf->multi, MPIU_INT, newoffset, newoutoffset, MPI_REPLACE));
12299566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(sf->nleaves, &newremote));
123095fce210SBarry Smith       for (i = 0; i < sf->nleaves; i++) {
123195fce210SBarry Smith         newremote[i].rank  = sf->remote[i].rank;
123201365b40SToby Isaac         newremote[i].index = newoutoffset[sf->mine ? sf->mine[i] : i];
123395fce210SBarry Smith       }
12349566063dSJacob Faibussowitsch       PetscCall(PetscSFSetGraph(sf->multi, inoffset[sf->nroots], sf->nleaves, sf->mine, PETSC_COPY_VALUES, newremote, PETSC_OWN_POINTER));
12359566063dSJacob Faibussowitsch       PetscCall(PetscFree5(inranks, newoffset, outranks, newoutoffset, tmpoffset));
123695fce210SBarry Smith     }
12379566063dSJacob Faibussowitsch     PetscCall(PetscFree3(inoffset, outones, outoffset));
123895fce210SBarry Smith   }
123995fce210SBarry Smith   *multi = sf->multi;
12403ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
124195fce210SBarry Smith }
124295fce210SBarry Smith 
124395fce210SBarry Smith /*@C
124420662ed9SBarry Smith    PetscSFCreateEmbeddedRootSF - removes edges from all but the selected roots of a `PetscSF`, does not remap indices
124595fce210SBarry Smith 
124695fce210SBarry Smith    Collective
124795fce210SBarry Smith 
12484165533cSJose E. Roman    Input Parameters:
124995fce210SBarry Smith +  sf - original star forest
1250ba2a7774SJunchao Zhang .  nselected  - number of selected roots on this process
1251ba2a7774SJunchao Zhang -  selected   - indices of the selected roots on this process
125295fce210SBarry Smith 
12534165533cSJose E. Roman    Output Parameter:
1254cd620004SJunchao Zhang .  esf - new star forest
125595fce210SBarry Smith 
125695fce210SBarry Smith    Level: advanced
125795fce210SBarry Smith 
125895fce210SBarry Smith    Note:
1259cab54364SBarry Smith    To use the new `PetscSF`, it may be necessary to know the indices of the leaves that are still participating. This can
126095fce210SBarry Smith    be done by calling PetscSFGetGraph().
126195fce210SBarry Smith 
1262cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFSetGraph()`, `PetscSFGetGraph()`
126395fce210SBarry Smith @*/
1264d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFCreateEmbeddedRootSF(PetscSF sf, PetscInt nselected, const PetscInt *selected, PetscSF *esf)
1265d71ae5a4SJacob Faibussowitsch {
1266cd620004SJunchao Zhang   PetscInt           i, j, n, nroots, nleaves, esf_nleaves, *new_ilocal, minleaf, maxleaf, maxlocal;
1267cd620004SJunchao Zhang   const PetscInt    *ilocal;
1268cd620004SJunchao Zhang   signed char       *rootdata, *leafdata, *leafmem;
1269ba2a7774SJunchao Zhang   const PetscSFNode *iremote;
1270f659e5c7SJunchao Zhang   PetscSFNode       *new_iremote;
1271f659e5c7SJunchao Zhang   MPI_Comm           comm;
127295fce210SBarry Smith 
127395fce210SBarry Smith   PetscFunctionBegin;
127495fce210SBarry Smith   PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1);
127529046d53SLisandro Dalcin   PetscSFCheckGraphSet(sf, 1);
1276dadcf809SJacob Faibussowitsch   if (nselected) PetscValidIntPointer(selected, 3);
1277cd620004SJunchao Zhang   PetscValidPointer(esf, 4);
12780511a646SMatthew G. Knepley 
12799566063dSJacob Faibussowitsch   PetscCall(PetscSFSetUp(sf));
12809566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(PETSCSF_EmbedSF, sf, 0, 0, 0));
12819566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)sf, &comm));
12829566063dSJacob Faibussowitsch   PetscCall(PetscSFGetGraph(sf, &nroots, &nleaves, &ilocal, &iremote));
1283cd620004SJunchao Zhang 
128476bd3646SJed Brown   if (PetscDefined(USE_DEBUG)) { /* Error out if selected[] has dups or  out of range indices */
1285cd620004SJunchao Zhang     PetscBool dups;
12869566063dSJacob Faibussowitsch     PetscCall(PetscCheckDupsInt(nselected, selected, &dups));
128728b400f6SJacob Faibussowitsch     PetscCheck(!dups, comm, PETSC_ERR_ARG_WRONG, "selected[] has dups");
12889371c9d4SSatish Balay     for (i = 0; i < nselected; i++) PetscCheck(selected[i] >= 0 && selected[i] < nroots, comm, PETSC_ERR_ARG_OUTOFRANGE, "selected root indice %" PetscInt_FMT " is out of [0,%" PetscInt_FMT ")", selected[i], nroots);
1289cd620004SJunchao Zhang   }
1290f659e5c7SJunchao Zhang 
1291dbbe0bcdSBarry Smith   if (sf->ops->CreateEmbeddedRootSF) PetscUseTypeMethod(sf, CreateEmbeddedRootSF, nselected, selected, esf);
1292dbbe0bcdSBarry Smith   else {
1293cd620004SJunchao Zhang     /* A generic version of creating embedded sf */
12949566063dSJacob Faibussowitsch     PetscCall(PetscSFGetLeafRange(sf, &minleaf, &maxleaf));
1295cd620004SJunchao Zhang     maxlocal = maxleaf - minleaf + 1;
12969566063dSJacob Faibussowitsch     PetscCall(PetscCalloc2(nroots, &rootdata, maxlocal, &leafmem));
1297cd620004SJunchao Zhang     leafdata = leafmem - minleaf;
1298cd620004SJunchao Zhang     /* Tag selected roots and bcast to leaves */
1299cd620004SJunchao Zhang     for (i = 0; i < nselected; i++) rootdata[selected[i]] = 1;
13009566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastBegin(sf, MPI_SIGNED_CHAR, rootdata, leafdata, MPI_REPLACE));
13019566063dSJacob Faibussowitsch     PetscCall(PetscSFBcastEnd(sf, MPI_SIGNED_CHAR, rootdata, leafdata, MPI_REPLACE));
1302ba2a7774SJunchao Zhang 
1303cd620004SJunchao Zhang     /* Build esf with leaves that are still connected */
1304cd620004SJunchao Zhang     esf_nleaves = 0;
1305cd620004SJunchao Zhang     for (i = 0; i < nleaves; i++) {
1306cd620004SJunchao Zhang       j = ilocal ? ilocal[i] : i;
1307cd620004SJunchao Zhang       /* esf_nleaves += leafdata[j] should work in theory, but failed with SFWindow bugs
1308cd620004SJunchao Zhang          with PetscSFBcast. See https://gitlab.com/petsc/petsc/issues/555
1309cd620004SJunchao Zhang       */
1310cd620004SJunchao Zhang       esf_nleaves += (leafdata[j] ? 1 : 0);
1311cd620004SJunchao Zhang     }
13129566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(esf_nleaves, &new_ilocal));
13139566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(esf_nleaves, &new_iremote));
1314cd620004SJunchao Zhang     for (i = n = 0; i < nleaves; i++) {
1315cd620004SJunchao Zhang       j = ilocal ? ilocal[i] : i;
1316cd620004SJunchao Zhang       if (leafdata[j]) {
1317cd620004SJunchao Zhang         new_ilocal[n]        = j;
1318cd620004SJunchao Zhang         new_iremote[n].rank  = iremote[i].rank;
1319cd620004SJunchao Zhang         new_iremote[n].index = iremote[i].index;
1320fc1ede2bSMatthew G. Knepley         ++n;
132195fce210SBarry Smith       }
132295fce210SBarry Smith     }
13239566063dSJacob Faibussowitsch     PetscCall(PetscSFCreate(comm, esf));
13249566063dSJacob Faibussowitsch     PetscCall(PetscSFSetFromOptions(*esf));
13259566063dSJacob Faibussowitsch     PetscCall(PetscSFSetGraph(*esf, nroots, esf_nleaves, new_ilocal, PETSC_OWN_POINTER, new_iremote, PETSC_OWN_POINTER));
13269566063dSJacob Faibussowitsch     PetscCall(PetscFree2(rootdata, leafmem));
1327f659e5c7SJunchao Zhang   }
13289566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(PETSCSF_EmbedSF, sf, 0, 0, 0));
13293ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
133095fce210SBarry Smith }
133195fce210SBarry Smith 
13322f5fb4c2SMatthew G. Knepley /*@C
133320662ed9SBarry Smith   PetscSFCreateEmbeddedLeafSF - removes edges from all but the selected leaves of a `PetscSF`, does not remap indices
13342f5fb4c2SMatthew G. Knepley 
13352f5fb4c2SMatthew G. Knepley   Collective
13362f5fb4c2SMatthew G. Knepley 
13374165533cSJose E. Roman   Input Parameters:
13382f5fb4c2SMatthew G. Knepley + sf - original star forest
1339f659e5c7SJunchao Zhang . nselected  - number of selected leaves on this process
1340f659e5c7SJunchao Zhang - selected   - indices of the selected leaves on this process
13412f5fb4c2SMatthew G. Knepley 
13424165533cSJose E. Roman   Output Parameter:
13432f5fb4c2SMatthew G. Knepley .  newsf - new star forest
13442f5fb4c2SMatthew G. Knepley 
13452f5fb4c2SMatthew G. Knepley   Level: advanced
13462f5fb4c2SMatthew G. Knepley 
1347cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFCreateEmbeddedRootSF()`, `PetscSFSetGraph()`, `PetscSFGetGraph()`
13482f5fb4c2SMatthew G. Knepley @*/
1349d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFCreateEmbeddedLeafSF(PetscSF sf, PetscInt nselected, const PetscInt *selected, PetscSF *newsf)
1350d71ae5a4SJacob Faibussowitsch {
1351f659e5c7SJunchao Zhang   const PetscSFNode *iremote;
1352f659e5c7SJunchao Zhang   PetscSFNode       *new_iremote;
1353f659e5c7SJunchao Zhang   const PetscInt    *ilocal;
1354f659e5c7SJunchao Zhang   PetscInt           i, nroots, *leaves, *new_ilocal;
1355f659e5c7SJunchao Zhang   MPI_Comm           comm;
13562f5fb4c2SMatthew G. Knepley 
13572f5fb4c2SMatthew G. Knepley   PetscFunctionBegin;
13582f5fb4c2SMatthew G. Knepley   PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1);
135929046d53SLisandro Dalcin   PetscSFCheckGraphSet(sf, 1);
1360dadcf809SJacob Faibussowitsch   if (nselected) PetscValidIntPointer(selected, 3);
13612f5fb4c2SMatthew G. Knepley   PetscValidPointer(newsf, 4);
13622f5fb4c2SMatthew G. Knepley 
1363f659e5c7SJunchao Zhang   /* Uniq selected[] and put results in leaves[] */
13649566063dSJacob Faibussowitsch   PetscCall(PetscObjectGetComm((PetscObject)sf, &comm));
13659566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nselected, &leaves));
13669566063dSJacob Faibussowitsch   PetscCall(PetscArraycpy(leaves, selected, nselected));
13679566063dSJacob Faibussowitsch   PetscCall(PetscSortedRemoveDupsInt(&nselected, leaves));
136808401ef6SPierre Jolivet   PetscCheck(!nselected || !(leaves[0] < 0 || leaves[nselected - 1] >= sf->nleaves), comm, PETSC_ERR_ARG_OUTOFRANGE, "Min/Max leaf indices %" PetscInt_FMT "/%" PetscInt_FMT " are not in [0,%" PetscInt_FMT ")", leaves[0], leaves[nselected - 1], sf->nleaves);
1369f659e5c7SJunchao Zhang 
1370f659e5c7SJunchao Zhang   /* Optimize the routine only when sf is setup and hence we can reuse sf's communication pattern */
1371dbbe0bcdSBarry Smith   if (sf->setupcalled && sf->ops->CreateEmbeddedLeafSF) PetscUseTypeMethod(sf, CreateEmbeddedLeafSF, nselected, leaves, newsf);
1372dbbe0bcdSBarry Smith   else {
13739566063dSJacob Faibussowitsch     PetscCall(PetscSFGetGraph(sf, &nroots, NULL, &ilocal, &iremote));
13749566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nselected, &new_ilocal));
13759566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nselected, &new_iremote));
1376f659e5c7SJunchao Zhang     for (i = 0; i < nselected; ++i) {
1377f659e5c7SJunchao Zhang       const PetscInt l     = leaves[i];
1378f659e5c7SJunchao Zhang       new_ilocal[i]        = ilocal ? ilocal[l] : l;
1379f659e5c7SJunchao Zhang       new_iremote[i].rank  = iremote[l].rank;
1380f659e5c7SJunchao Zhang       new_iremote[i].index = iremote[l].index;
13812f5fb4c2SMatthew G. Knepley     }
13829566063dSJacob Faibussowitsch     PetscCall(PetscSFDuplicate(sf, PETSCSF_DUPLICATE_CONFONLY, newsf));
13839566063dSJacob Faibussowitsch     PetscCall(PetscSFSetGraph(*newsf, nroots, nselected, new_ilocal, PETSC_OWN_POINTER, new_iremote, PETSC_OWN_POINTER));
1384f659e5c7SJunchao Zhang   }
13859566063dSJacob Faibussowitsch   PetscCall(PetscFree(leaves));
13863ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
13872f5fb4c2SMatthew G. Knepley }
13882f5fb4c2SMatthew G. Knepley 
138995fce210SBarry Smith /*@C
1390cab54364SBarry Smith    PetscSFBcastBegin - begin pointwise broadcast with root value being reduced to leaf value, to be concluded with call to `PetscSFBcastEnd()`
13913482bfa8SJunchao Zhang 
1392c3339decSBarry Smith    Collective
13933482bfa8SJunchao Zhang 
13944165533cSJose E. Roman    Input Parameters:
13953482bfa8SJunchao Zhang +  sf - star forest on which to communicate
13963482bfa8SJunchao Zhang .  unit - data type associated with each node
13973482bfa8SJunchao Zhang .  rootdata - buffer to broadcast
13983482bfa8SJunchao Zhang -  op - operation to use for reduction
13993482bfa8SJunchao Zhang 
14004165533cSJose E. Roman    Output Parameter:
14013482bfa8SJunchao Zhang .  leafdata - buffer to be reduced with values from each leaf's respective root
14023482bfa8SJunchao Zhang 
14033482bfa8SJunchao Zhang    Level: intermediate
14043482bfa8SJunchao Zhang 
140520662ed9SBarry Smith    Note:
140620662ed9SBarry Smith     When PETSc is configured with device support, it will use its own mechanism to figure out whether the given data pointers
1407da81f932SPierre Jolivet     are host pointers or device pointers, which may incur a noticeable cost. If you already knew the info, you should
1408cab54364SBarry Smith     use `PetscSFBcastWithMemTypeBegin()` instead.
1409cab54364SBarry Smith 
1410cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFBcastEnd()`, `PetscSFBcastWithMemTypeBegin()`
14113482bfa8SJunchao Zhang @*/
1412d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFBcastBegin(PetscSF sf, MPI_Datatype unit, const void *rootdata, void *leafdata, MPI_Op op)
1413d71ae5a4SJacob Faibussowitsch {
1414eb02082bSJunchao Zhang   PetscMemType rootmtype, leafmtype;
14153482bfa8SJunchao Zhang 
14163482bfa8SJunchao Zhang   PetscFunctionBegin;
14173482bfa8SJunchao Zhang   PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1);
14189566063dSJacob Faibussowitsch   PetscCall(PetscSFSetUp(sf));
14199566063dSJacob Faibussowitsch   if (!sf->vscat.logging) PetscCall(PetscLogEventBegin(PETSCSF_BcastBegin, sf, 0, 0, 0));
14209566063dSJacob Faibussowitsch   PetscCall(PetscGetMemType(rootdata, &rootmtype));
14219566063dSJacob Faibussowitsch   PetscCall(PetscGetMemType(leafdata, &leafmtype));
1422dbbe0bcdSBarry Smith   PetscUseTypeMethod(sf, BcastBegin, unit, rootmtype, rootdata, leafmtype, leafdata, op);
14239566063dSJacob Faibussowitsch   if (!sf->vscat.logging) PetscCall(PetscLogEventEnd(PETSCSF_BcastBegin, sf, 0, 0, 0));
14243ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
14253482bfa8SJunchao Zhang }
14263482bfa8SJunchao Zhang 
14273482bfa8SJunchao Zhang /*@C
142820662ed9SBarry Smith    PetscSFBcastWithMemTypeBegin - begin pointwise broadcast with root value being reduced to leaf value with explicit memory types, to be concluded with call
142920662ed9SBarry Smith    to `PetscSFBcastEnd()`
1430d0295fc0SJunchao Zhang 
1431c3339decSBarry Smith    Collective
1432d0295fc0SJunchao Zhang 
14334165533cSJose E. Roman    Input Parameters:
1434d0295fc0SJunchao Zhang +  sf - star forest on which to communicate
1435d0295fc0SJunchao Zhang .  unit - data type associated with each node
1436d0295fc0SJunchao Zhang .  rootmtype - memory type of rootdata
1437d0295fc0SJunchao Zhang .  rootdata - buffer to broadcast
1438d0295fc0SJunchao Zhang .  leafmtype - memory type of leafdata
1439d0295fc0SJunchao Zhang -  op - operation to use for reduction
1440d0295fc0SJunchao Zhang 
14414165533cSJose E. Roman    Output Parameter:
1442d0295fc0SJunchao Zhang .  leafdata - buffer to be reduced with values from each leaf's respective root
1443d0295fc0SJunchao Zhang 
1444d0295fc0SJunchao Zhang    Level: intermediate
1445d0295fc0SJunchao Zhang 
1446cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFBcastEnd()`, `PetscSFBcastBegin()`
1447d0295fc0SJunchao Zhang @*/
1448d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFBcastWithMemTypeBegin(PetscSF sf, MPI_Datatype unit, PetscMemType rootmtype, const void *rootdata, PetscMemType leafmtype, void *leafdata, MPI_Op op)
1449d71ae5a4SJacob Faibussowitsch {
1450d0295fc0SJunchao Zhang   PetscFunctionBegin;
1451d0295fc0SJunchao Zhang   PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1);
14529566063dSJacob Faibussowitsch   PetscCall(PetscSFSetUp(sf));
14539566063dSJacob Faibussowitsch   if (!sf->vscat.logging) PetscCall(PetscLogEventBegin(PETSCSF_BcastBegin, sf, 0, 0, 0));
1454dbbe0bcdSBarry Smith   PetscUseTypeMethod(sf, BcastBegin, unit, rootmtype, rootdata, leafmtype, leafdata, op);
14559566063dSJacob Faibussowitsch   if (!sf->vscat.logging) PetscCall(PetscLogEventEnd(PETSCSF_BcastBegin, sf, 0, 0, 0));
14563ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1457d0295fc0SJunchao Zhang }
1458d0295fc0SJunchao Zhang 
1459d0295fc0SJunchao Zhang /*@C
146020662ed9SBarry Smith    PetscSFBcastEnd - end a broadcast and reduce operation started with `PetscSFBcastBegin()` or `PetscSFBcastWithMemTypeBegin()`
14613482bfa8SJunchao Zhang 
14623482bfa8SJunchao Zhang    Collective
14633482bfa8SJunchao Zhang 
14644165533cSJose E. Roman    Input Parameters:
14653482bfa8SJunchao Zhang +  sf - star forest
14663482bfa8SJunchao Zhang .  unit - data type
14673482bfa8SJunchao Zhang .  rootdata - buffer to broadcast
14683482bfa8SJunchao Zhang -  op - operation to use for reduction
14693482bfa8SJunchao Zhang 
14704165533cSJose E. Roman    Output Parameter:
14713482bfa8SJunchao Zhang .  leafdata - buffer to be reduced with values from each leaf's respective root
14723482bfa8SJunchao Zhang 
14733482bfa8SJunchao Zhang    Level: intermediate
14743482bfa8SJunchao Zhang 
1475cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFSetGraph()`, `PetscSFReduceEnd()`
14763482bfa8SJunchao Zhang @*/
1477d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFBcastEnd(PetscSF sf, MPI_Datatype unit, const void *rootdata, void *leafdata, MPI_Op op)
1478d71ae5a4SJacob Faibussowitsch {
14793482bfa8SJunchao Zhang   PetscFunctionBegin;
14803482bfa8SJunchao Zhang   PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1);
14819566063dSJacob Faibussowitsch   if (!sf->vscat.logging) PetscCall(PetscLogEventBegin(PETSCSF_BcastEnd, sf, 0, 0, 0));
1482dbbe0bcdSBarry Smith   PetscUseTypeMethod(sf, BcastEnd, unit, rootdata, leafdata, op);
14839566063dSJacob Faibussowitsch   if (!sf->vscat.logging) PetscCall(PetscLogEventEnd(PETSCSF_BcastEnd, sf, 0, 0, 0));
14843ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
14853482bfa8SJunchao Zhang }
14863482bfa8SJunchao Zhang 
14873482bfa8SJunchao Zhang /*@C
1488cab54364SBarry Smith    PetscSFReduceBegin - begin reduction of leafdata into rootdata, to be completed with call to `PetscSFReduceEnd()`
148995fce210SBarry Smith 
149095fce210SBarry Smith    Collective
149195fce210SBarry Smith 
14924165533cSJose E. Roman    Input Parameters:
149395fce210SBarry Smith +  sf - star forest
149495fce210SBarry Smith .  unit - data type
149595fce210SBarry Smith .  leafdata - values to reduce
149695fce210SBarry Smith -  op - reduction operation
149795fce210SBarry Smith 
14984165533cSJose E. Roman    Output Parameter:
149995fce210SBarry Smith .  rootdata - result of reduction of values from all leaves of each root
150095fce210SBarry Smith 
150195fce210SBarry Smith    Level: intermediate
150295fce210SBarry Smith 
150320662ed9SBarry Smith    Note:
150420662ed9SBarry Smith     When PETSc is configured with device support, it will use its own mechanism to figure out whether the given data pointers
1505da81f932SPierre Jolivet     are host pointers or device pointers, which may incur a noticeable cost. If you already knew the info, you should
1506cab54364SBarry Smith     use `PetscSFReduceWithMemTypeBegin()` instead.
1507d0295fc0SJunchao Zhang 
150820662ed9SBarry Smith .seealso: `PetscSF`, `PetscSFBcastBegin()`, `PetscSFReduceWithMemTypeBegin()`, `PetscSFReduceEnd()`
150995fce210SBarry Smith @*/
1510d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFReduceBegin(PetscSF sf, MPI_Datatype unit, const void *leafdata, void *rootdata, MPI_Op op)
1511d71ae5a4SJacob Faibussowitsch {
1512eb02082bSJunchao Zhang   PetscMemType rootmtype, leafmtype;
151395fce210SBarry Smith 
151495fce210SBarry Smith   PetscFunctionBegin;
151595fce210SBarry Smith   PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1);
15169566063dSJacob Faibussowitsch   PetscCall(PetscSFSetUp(sf));
15179566063dSJacob Faibussowitsch   if (!sf->vscat.logging) PetscCall(PetscLogEventBegin(PETSCSF_ReduceBegin, sf, 0, 0, 0));
15189566063dSJacob Faibussowitsch   PetscCall(PetscGetMemType(rootdata, &rootmtype));
15199566063dSJacob Faibussowitsch   PetscCall(PetscGetMemType(leafdata, &leafmtype));
15209566063dSJacob Faibussowitsch   PetscCall((sf->ops->ReduceBegin)(sf, unit, leafmtype, leafdata, rootmtype, rootdata, op));
15219566063dSJacob Faibussowitsch   if (!sf->vscat.logging) PetscCall(PetscLogEventEnd(PETSCSF_ReduceBegin, sf, 0, 0, 0));
15223ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
152395fce210SBarry Smith }
152495fce210SBarry Smith 
152595fce210SBarry Smith /*@C
1526cab54364SBarry Smith    PetscSFReduceWithMemTypeBegin - begin reduction of leafdata into rootdata with explicit memory types, to be completed with call to `PetscSFReduceEnd()`
1527d0295fc0SJunchao Zhang 
1528d0295fc0SJunchao Zhang    Collective
1529d0295fc0SJunchao Zhang 
15304165533cSJose E. Roman    Input Parameters:
1531d0295fc0SJunchao Zhang +  sf - star forest
1532d0295fc0SJunchao Zhang .  unit - data type
1533d0295fc0SJunchao Zhang .  leafmtype - memory type of leafdata
1534d0295fc0SJunchao Zhang .  leafdata - values to reduce
1535d0295fc0SJunchao Zhang .  rootmtype - memory type of rootdata
1536d0295fc0SJunchao Zhang -  op - reduction operation
1537d0295fc0SJunchao Zhang 
15384165533cSJose E. Roman    Output Parameter:
1539d0295fc0SJunchao Zhang .  rootdata - result of reduction of values from all leaves of each root
1540d0295fc0SJunchao Zhang 
1541d0295fc0SJunchao Zhang    Level: intermediate
1542d0295fc0SJunchao Zhang 
154320662ed9SBarry Smith .seealso: `PetscSF`, `PetscSFBcastBegin()`, `PetscSFReduceBegin()`, `PetscSFReduceEnd()`
1544d0295fc0SJunchao Zhang @*/
1545d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFReduceWithMemTypeBegin(PetscSF sf, MPI_Datatype unit, PetscMemType leafmtype, const void *leafdata, PetscMemType rootmtype, void *rootdata, MPI_Op op)
1546d71ae5a4SJacob Faibussowitsch {
1547d0295fc0SJunchao Zhang   PetscFunctionBegin;
1548d0295fc0SJunchao Zhang   PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1);
15499566063dSJacob Faibussowitsch   PetscCall(PetscSFSetUp(sf));
15509566063dSJacob Faibussowitsch   if (!sf->vscat.logging) PetscCall(PetscLogEventBegin(PETSCSF_ReduceBegin, sf, 0, 0, 0));
15519566063dSJacob Faibussowitsch   PetscCall((sf->ops->ReduceBegin)(sf, unit, leafmtype, leafdata, rootmtype, rootdata, op));
15529566063dSJacob Faibussowitsch   if (!sf->vscat.logging) PetscCall(PetscLogEventEnd(PETSCSF_ReduceBegin, sf, 0, 0, 0));
15533ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1554d0295fc0SJunchao Zhang }
1555d0295fc0SJunchao Zhang 
1556d0295fc0SJunchao Zhang /*@C
155720662ed9SBarry Smith    PetscSFReduceEnd - end a reduction operation started with `PetscSFReduceBegin()` or `PetscSFReduceWithMemTypeBegin()`
155895fce210SBarry Smith 
155995fce210SBarry Smith    Collective
156095fce210SBarry Smith 
15614165533cSJose E. Roman    Input Parameters:
156295fce210SBarry Smith +  sf - star forest
156395fce210SBarry Smith .  unit - data type
156495fce210SBarry Smith .  leafdata - values to reduce
156595fce210SBarry Smith -  op - reduction operation
156695fce210SBarry Smith 
15674165533cSJose E. Roman    Output Parameter:
156895fce210SBarry Smith .  rootdata - result of reduction of values from all leaves of each root
156995fce210SBarry Smith 
157095fce210SBarry Smith    Level: intermediate
157195fce210SBarry Smith 
157220662ed9SBarry Smith .seealso: `PetscSF`, `PetscSFSetGraph()`, `PetscSFBcastEnd()`, `PetscSFReduceBegin()`, `PetscSFReduceWithMemTypeBegin()`
157395fce210SBarry Smith @*/
1574d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFReduceEnd(PetscSF sf, MPI_Datatype unit, const void *leafdata, void *rootdata, MPI_Op op)
1575d71ae5a4SJacob Faibussowitsch {
157695fce210SBarry Smith   PetscFunctionBegin;
157795fce210SBarry Smith   PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1);
15789566063dSJacob Faibussowitsch   if (!sf->vscat.logging) PetscCall(PetscLogEventBegin(PETSCSF_ReduceEnd, sf, 0, 0, 0));
1579dbbe0bcdSBarry Smith   PetscUseTypeMethod(sf, ReduceEnd, unit, leafdata, rootdata, op);
15809566063dSJacob Faibussowitsch   if (!sf->vscat.logging) PetscCall(PetscLogEventEnd(PETSCSF_ReduceEnd, sf, 0, 0, 0));
15813ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
158295fce210SBarry Smith }
158395fce210SBarry Smith 
158495fce210SBarry Smith /*@C
1585cab54364SBarry Smith    PetscSFFetchAndOpBegin - begin operation that fetches values from root and updates atomically by applying operation using my leaf value,
1586cab54364SBarry Smith    to be completed with `PetscSFFetchAndOpEnd()`
1587a1729e3fSJunchao Zhang 
1588a1729e3fSJunchao Zhang    Collective
1589a1729e3fSJunchao Zhang 
15904165533cSJose E. Roman    Input Parameters:
1591a1729e3fSJunchao Zhang +  sf - star forest
1592a1729e3fSJunchao Zhang .  unit - data type
1593a1729e3fSJunchao Zhang .  leafdata - leaf values to use in reduction
1594a1729e3fSJunchao Zhang -  op - operation to use for reduction
1595a1729e3fSJunchao Zhang 
15964165533cSJose E. Roman    Output Parameters:
1597a1729e3fSJunchao Zhang +  rootdata - root values to be updated, input state is seen by first process to perform an update
1598a1729e3fSJunchao Zhang -  leafupdate - state at each leaf's respective root immediately prior to my atomic update
1599a1729e3fSJunchao Zhang 
1600a1729e3fSJunchao Zhang    Level: advanced
1601a1729e3fSJunchao Zhang 
1602a1729e3fSJunchao Zhang    Note:
1603a1729e3fSJunchao Zhang    The update is only atomic at the granularity provided by the hardware. Different roots referenced by the same process
1604a1729e3fSJunchao Zhang    might be updated in a different order. Furthermore, if a composite type is used for the unit datatype, atomicity is
1605a1729e3fSJunchao Zhang    not guaranteed across the whole vertex. Therefore, this function is mostly only used with primitive types such as
1606a1729e3fSJunchao Zhang    integers.
1607a1729e3fSJunchao Zhang 
1608cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFComputeDegreeBegin()`, `PetscSFReduceBegin()`, `PetscSFSetGraph()`
1609a1729e3fSJunchao Zhang @*/
1610d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFFetchAndOpBegin(PetscSF sf, MPI_Datatype unit, void *rootdata, const void *leafdata, void *leafupdate, MPI_Op op)
1611d71ae5a4SJacob Faibussowitsch {
1612eb02082bSJunchao Zhang   PetscMemType rootmtype, leafmtype, leafupdatemtype;
1613a1729e3fSJunchao Zhang 
1614a1729e3fSJunchao Zhang   PetscFunctionBegin;
1615a1729e3fSJunchao Zhang   PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1);
16169566063dSJacob Faibussowitsch   PetscCall(PetscSFSetUp(sf));
16179566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(PETSCSF_FetchAndOpBegin, sf, 0, 0, 0));
16189566063dSJacob Faibussowitsch   PetscCall(PetscGetMemType(rootdata, &rootmtype));
16199566063dSJacob Faibussowitsch   PetscCall(PetscGetMemType(leafdata, &leafmtype));
16209566063dSJacob Faibussowitsch   PetscCall(PetscGetMemType(leafupdate, &leafupdatemtype));
162108401ef6SPierre Jolivet   PetscCheck(leafmtype == leafupdatemtype, PETSC_COMM_SELF, PETSC_ERR_SUP, "No support for leafdata and leafupdate in different memory types");
1622dbbe0bcdSBarry Smith   PetscUseTypeMethod(sf, FetchAndOpBegin, unit, rootmtype, rootdata, leafmtype, leafdata, leafupdate, op);
16239566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(PETSCSF_FetchAndOpBegin, sf, 0, 0, 0));
16243ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1625a1729e3fSJunchao Zhang }
1626a1729e3fSJunchao Zhang 
1627a1729e3fSJunchao Zhang /*@C
1628cab54364SBarry Smith    PetscSFFetchAndOpWithMemTypeBegin - begin operation with explicit memory types that fetches values from root and updates atomically by
1629cab54364SBarry Smith    applying operation using my leaf value, to be completed with `PetscSFFetchAndOpEnd()`
1630d3b3e55cSJunchao Zhang 
1631d3b3e55cSJunchao Zhang    Collective
1632d3b3e55cSJunchao Zhang 
1633d3b3e55cSJunchao Zhang    Input Parameters:
1634d3b3e55cSJunchao Zhang +  sf - star forest
1635d3b3e55cSJunchao Zhang .  unit - data type
1636d3b3e55cSJunchao Zhang .  rootmtype - memory type of rootdata
1637d3b3e55cSJunchao Zhang .  leafmtype - memory type of leafdata
1638d3b3e55cSJunchao Zhang .  leafdata - leaf values to use in reduction
1639d3b3e55cSJunchao Zhang .  leafupdatemtype - memory type of leafupdate
1640d3b3e55cSJunchao Zhang -  op - operation to use for reduction
1641d3b3e55cSJunchao Zhang 
1642d3b3e55cSJunchao Zhang    Output Parameters:
1643d3b3e55cSJunchao Zhang +  rootdata - root values to be updated, input state is seen by first process to perform an update
1644d3b3e55cSJunchao Zhang -  leafupdate - state at each leaf's respective root immediately prior to my atomic update
1645d3b3e55cSJunchao Zhang 
1646d3b3e55cSJunchao Zhang    Level: advanced
1647d3b3e55cSJunchao Zhang 
1648cab54364SBarry Smith    Note:
1649cab54364SBarry Smith    See `PetscSFFetchAndOpBegin()` for more details.
1650d3b3e55cSJunchao Zhang 
165120662ed9SBarry Smith .seealso: `PetscSF`, `PetscSFFetchAndOpBegin()`, `PetscSFComputeDegreeBegin()`, `PetscSFReduceBegin()`, `PetscSFSetGraph()`, `PetscSFFetchAndOpEnd()`
1652d3b3e55cSJunchao Zhang @*/
1653d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFFetchAndOpWithMemTypeBegin(PetscSF sf, MPI_Datatype unit, PetscMemType rootmtype, void *rootdata, PetscMemType leafmtype, const void *leafdata, PetscMemType leafupdatemtype, void *leafupdate, MPI_Op op)
1654d71ae5a4SJacob Faibussowitsch {
1655d3b3e55cSJunchao Zhang   PetscFunctionBegin;
1656d3b3e55cSJunchao Zhang   PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1);
16579566063dSJacob Faibussowitsch   PetscCall(PetscSFSetUp(sf));
16589566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(PETSCSF_FetchAndOpBegin, sf, 0, 0, 0));
165908401ef6SPierre Jolivet   PetscCheck(leafmtype == leafupdatemtype, PETSC_COMM_SELF, PETSC_ERR_SUP, "No support for leafdata and leafupdate in different memory types");
1660dbbe0bcdSBarry Smith   PetscUseTypeMethod(sf, FetchAndOpBegin, unit, rootmtype, rootdata, leafmtype, leafdata, leafupdate, op);
16619566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(PETSCSF_FetchAndOpBegin, sf, 0, 0, 0));
16623ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1663d3b3e55cSJunchao Zhang }
1664d3b3e55cSJunchao Zhang 
1665d3b3e55cSJunchao Zhang /*@C
166620662ed9SBarry Smith    PetscSFFetchAndOpEnd - end operation started in matching call to `PetscSFFetchAndOpBegin()` or `PetscSFFetchAndOpWithMemTypeBegin()`
166720662ed9SBarry Smith    to fetch values from roots and update atomically by applying operation using my leaf value
1668a1729e3fSJunchao Zhang 
1669a1729e3fSJunchao Zhang    Collective
1670a1729e3fSJunchao Zhang 
16714165533cSJose E. Roman    Input Parameters:
1672a1729e3fSJunchao Zhang +  sf - star forest
1673a1729e3fSJunchao Zhang .  unit - data type
1674a1729e3fSJunchao Zhang .  leafdata - leaf values to use in reduction
1675a1729e3fSJunchao Zhang -  op - operation to use for reduction
1676a1729e3fSJunchao Zhang 
16774165533cSJose E. Roman    Output Parameters:
1678a1729e3fSJunchao Zhang +  rootdata - root values to be updated, input state is seen by first process to perform an update
1679a1729e3fSJunchao Zhang -  leafupdate - state at each leaf's respective root immediately prior to my atomic update
1680a1729e3fSJunchao Zhang 
1681a1729e3fSJunchao Zhang    Level: advanced
1682a1729e3fSJunchao Zhang 
168320662ed9SBarry Smith .seealso: `PetscSF`, `PetscSFComputeDegreeEnd()`, `PetscSFReduceEnd()`, `PetscSFSetGraph()`, `PetscSFFetchAndOpBegin()`, `PetscSFFetchAndOpWithMemTypeBegin()`
1684a1729e3fSJunchao Zhang @*/
1685d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFFetchAndOpEnd(PetscSF sf, MPI_Datatype unit, void *rootdata, const void *leafdata, void *leafupdate, MPI_Op op)
1686d71ae5a4SJacob Faibussowitsch {
1687a1729e3fSJunchao Zhang   PetscFunctionBegin;
1688a1729e3fSJunchao Zhang   PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1);
16899566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(PETSCSF_FetchAndOpEnd, sf, 0, 0, 0));
1690dbbe0bcdSBarry Smith   PetscUseTypeMethod(sf, FetchAndOpEnd, unit, rootdata, leafdata, leafupdate, op);
16919566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(PETSCSF_FetchAndOpEnd, sf, 0, 0, 0));
16923ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1693a1729e3fSJunchao Zhang }
1694a1729e3fSJunchao Zhang 
1695a1729e3fSJunchao Zhang /*@C
1696cab54364SBarry Smith    PetscSFComputeDegreeBegin - begin computation of degree for each root vertex, to be completed with `PetscSFComputeDegreeEnd()`
169795fce210SBarry Smith 
169895fce210SBarry Smith    Collective
169995fce210SBarry Smith 
17004165533cSJose E. Roman    Input Parameter:
170195fce210SBarry Smith .  sf - star forest
170295fce210SBarry Smith 
17034165533cSJose E. Roman    Output Parameter:
170495fce210SBarry Smith .  degree - degree of each root vertex
170595fce210SBarry Smith 
170695fce210SBarry Smith    Level: advanced
170795fce210SBarry Smith 
1708cab54364SBarry Smith    Note:
170920662ed9SBarry Smith    The returned array is owned by `PetscSF` and automatically freed by `PetscSFDestroy()`. Hence there is no need to call `PetscFree()` on it.
1710ffe67aa5SVáclav Hapla 
1711cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFGatherBegin()`, `PetscSFComputeDegreeEnd()`
171295fce210SBarry Smith @*/
1713d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFComputeDegreeBegin(PetscSF sf, const PetscInt **degree)
1714d71ae5a4SJacob Faibussowitsch {
171595fce210SBarry Smith   PetscFunctionBegin;
171695fce210SBarry Smith   PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1);
171795fce210SBarry Smith   PetscSFCheckGraphSet(sf, 1);
171895fce210SBarry Smith   PetscValidPointer(degree, 2);
1719803bd9e8SMatthew G. Knepley   if (!sf->degreeknown) {
17205b0d146aSStefano Zampini     PetscInt i, nroots = sf->nroots, maxlocal;
172128b400f6SJacob Faibussowitsch     PetscCheck(!sf->degree, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Calls to PetscSFComputeDegreeBegin() cannot be nested.");
17225b0d146aSStefano Zampini     maxlocal = sf->maxleaf - sf->minleaf + 1;
17239566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nroots, &sf->degree));
17249566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(PetscMax(maxlocal, 1), &sf->degreetmp)); /* allocate at least one entry, see check in PetscSFComputeDegreeEnd() */
172529046d53SLisandro Dalcin     for (i = 0; i < nroots; i++) sf->degree[i] = 0;
17269837ea96SMatthew G. Knepley     for (i = 0; i < maxlocal; i++) sf->degreetmp[i] = 1;
17279566063dSJacob Faibussowitsch     PetscCall(PetscSFReduceBegin(sf, MPIU_INT, sf->degreetmp - sf->minleaf, sf->degree, MPI_SUM));
172895fce210SBarry Smith   }
172995fce210SBarry Smith   *degree = NULL;
17303ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
173195fce210SBarry Smith }
173295fce210SBarry Smith 
173395fce210SBarry Smith /*@C
1734cab54364SBarry Smith    PetscSFComputeDegreeEnd - complete computation of degree for each root vertex, started with `PetscSFComputeDegreeBegin()`
173595fce210SBarry Smith 
173695fce210SBarry Smith    Collective
173795fce210SBarry Smith 
17384165533cSJose E. Roman    Input Parameter:
173995fce210SBarry Smith .  sf - star forest
174095fce210SBarry Smith 
17414165533cSJose E. Roman    Output Parameter:
174295fce210SBarry Smith .  degree - degree of each root vertex
174395fce210SBarry Smith 
174495fce210SBarry Smith    Level: developer
174595fce210SBarry Smith 
1746cab54364SBarry Smith    Note:
174720662ed9SBarry Smith    The returned array is owned by `PetscSF` and automatically freed by `PetscSFDestroy()`. Hence there is no need to call `PetscFree()` on it.
1748ffe67aa5SVáclav Hapla 
1749cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFGatherBegin()`, `PetscSFComputeDegreeBegin()`
175095fce210SBarry Smith @*/
1751d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFComputeDegreeEnd(PetscSF sf, const PetscInt **degree)
1752d71ae5a4SJacob Faibussowitsch {
175395fce210SBarry Smith   PetscFunctionBegin;
175495fce210SBarry Smith   PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1);
175595fce210SBarry Smith   PetscSFCheckGraphSet(sf, 1);
175629046d53SLisandro Dalcin   PetscValidPointer(degree, 2);
175795fce210SBarry Smith   if (!sf->degreeknown) {
175828b400f6SJacob Faibussowitsch     PetscCheck(sf->degreetmp, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Must call PetscSFComputeDegreeBegin() before PetscSFComputeDegreeEnd()");
17599566063dSJacob Faibussowitsch     PetscCall(PetscSFReduceEnd(sf, MPIU_INT, sf->degreetmp - sf->minleaf, sf->degree, MPI_SUM));
17609566063dSJacob Faibussowitsch     PetscCall(PetscFree(sf->degreetmp));
176195fce210SBarry Smith     sf->degreeknown = PETSC_TRUE;
176295fce210SBarry Smith   }
176395fce210SBarry Smith   *degree = sf->degree;
17643ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
176595fce210SBarry Smith }
176695fce210SBarry Smith 
1767673100f5SVaclav Hapla /*@C
176820662ed9SBarry Smith    PetscSFComputeMultiRootOriginalNumbering - Returns original numbering of multi-roots (roots of multi-`PetscSF` returned by `PetscSFGetMultiSF()`).
176966dfcd1aSVaclav Hapla    Each multi-root is assigned index of the corresponding original root.
1770673100f5SVaclav Hapla 
1771673100f5SVaclav Hapla    Collective
1772673100f5SVaclav Hapla 
17734165533cSJose E. Roman    Input Parameters:
1774673100f5SVaclav Hapla +  sf - star forest
1775cab54364SBarry Smith -  degree - degree of each root vertex, computed with `PetscSFComputeDegreeBegin()`/`PetscSFComputeDegreeEnd()`
1776673100f5SVaclav Hapla 
17774165533cSJose E. Roman    Output Parameters:
177820662ed9SBarry Smith +  nMultiRoots - (optional) number of multi-roots (roots of multi-`PetscSF`)
177920662ed9SBarry Smith -  multiRootsOrigNumbering - original indices of multi-roots; length of this array is `nMultiRoots`
1780673100f5SVaclav Hapla 
1781673100f5SVaclav Hapla    Level: developer
1782673100f5SVaclav Hapla 
1783cab54364SBarry Smith    Note:
178420662ed9SBarry Smith    The returned array `multiRootsOrigNumbering` is newly allocated and should be destroyed with `PetscFree()` when no longer needed.
1785ffe67aa5SVáclav Hapla 
1786cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFComputeDegreeBegin()`, `PetscSFComputeDegreeEnd()`, `PetscSFGetMultiSF()`
1787673100f5SVaclav Hapla @*/
1788d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFComputeMultiRootOriginalNumbering(PetscSF sf, const PetscInt degree[], PetscInt *nMultiRoots, PetscInt *multiRootsOrigNumbering[])
1789d71ae5a4SJacob Faibussowitsch {
1790673100f5SVaclav Hapla   PetscSF  msf;
1791673100f5SVaclav Hapla   PetscInt i, j, k, nroots, nmroots;
1792673100f5SVaclav Hapla 
1793673100f5SVaclav Hapla   PetscFunctionBegin;
1794673100f5SVaclav Hapla   PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1);
17959566063dSJacob Faibussowitsch   PetscCall(PetscSFGetGraph(sf, &nroots, NULL, NULL, NULL));
179629328920SVaclav Hapla   if (nroots) PetscValidIntPointer(degree, 2);
179766dfcd1aSVaclav Hapla   if (nMultiRoots) PetscValidIntPointer(nMultiRoots, 3);
179866dfcd1aSVaclav Hapla   PetscValidPointer(multiRootsOrigNumbering, 4);
17999566063dSJacob Faibussowitsch   PetscCall(PetscSFGetMultiSF(sf, &msf));
18009566063dSJacob Faibussowitsch   PetscCall(PetscSFGetGraph(msf, &nmroots, NULL, NULL, NULL));
18019566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nmroots, multiRootsOrigNumbering));
1802673100f5SVaclav Hapla   for (i = 0, j = 0, k = 0; i < nroots; i++) {
1803673100f5SVaclav Hapla     if (!degree[i]) continue;
1804ad540459SPierre Jolivet     for (j = 0; j < degree[i]; j++, k++) (*multiRootsOrigNumbering)[k] = i;
1805673100f5SVaclav Hapla   }
180608401ef6SPierre Jolivet   PetscCheck(k == nmroots, PETSC_COMM_SELF, PETSC_ERR_PLIB, "sanity check fail");
180766dfcd1aSVaclav Hapla   if (nMultiRoots) *nMultiRoots = nmroots;
18083ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1809673100f5SVaclav Hapla }
1810673100f5SVaclav Hapla 
181195fce210SBarry Smith /*@C
1812cab54364SBarry Smith    PetscSFGatherBegin - begin pointwise gather of all leaves into multi-roots, to be completed with `PetscSFGatherEnd()`
181395fce210SBarry Smith 
181495fce210SBarry Smith    Collective
181595fce210SBarry Smith 
18164165533cSJose E. Roman    Input Parameters:
181795fce210SBarry Smith +  sf - star forest
181895fce210SBarry Smith .  unit - data type
181995fce210SBarry Smith -  leafdata - leaf data to gather to roots
182095fce210SBarry Smith 
18214165533cSJose E. Roman    Output Parameter:
182295fce210SBarry Smith .  multirootdata - root buffer to gather into, amount of space per root is equal to its degree
182395fce210SBarry Smith 
182495fce210SBarry Smith    Level: intermediate
182595fce210SBarry Smith 
1826cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFComputeDegreeBegin()`, `PetscSFScatterBegin()`
182795fce210SBarry Smith @*/
1828d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFGatherBegin(PetscSF sf, MPI_Datatype unit, const void *leafdata, void *multirootdata)
1829d71ae5a4SJacob Faibussowitsch {
1830a5526d50SJunchao Zhang   PetscSF multi = NULL;
183195fce210SBarry Smith 
183295fce210SBarry Smith   PetscFunctionBegin;
183395fce210SBarry Smith   PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1);
18349566063dSJacob Faibussowitsch   PetscCall(PetscSFSetUp(sf));
18359566063dSJacob Faibussowitsch   PetscCall(PetscSFGetMultiSF(sf, &multi));
18369566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceBegin(multi, unit, leafdata, multirootdata, MPI_REPLACE));
18373ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
183895fce210SBarry Smith }
183995fce210SBarry Smith 
184095fce210SBarry Smith /*@C
1841cab54364SBarry Smith    PetscSFGatherEnd - ends pointwise gather operation that was started with `PetscSFGatherBegin()`
184295fce210SBarry Smith 
184395fce210SBarry Smith    Collective
184495fce210SBarry Smith 
18454165533cSJose E. Roman    Input Parameters:
184695fce210SBarry Smith +  sf - star forest
184795fce210SBarry Smith .  unit - data type
184895fce210SBarry Smith -  leafdata - leaf data to gather to roots
184995fce210SBarry Smith 
18504165533cSJose E. Roman    Output Parameter:
185195fce210SBarry Smith .  multirootdata - root buffer to gather into, amount of space per root is equal to its degree
185295fce210SBarry Smith 
185395fce210SBarry Smith    Level: intermediate
185495fce210SBarry Smith 
1855cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFComputeDegreeEnd()`, `PetscSFScatterEnd()`
185695fce210SBarry Smith @*/
1857d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFGatherEnd(PetscSF sf, MPI_Datatype unit, const void *leafdata, void *multirootdata)
1858d71ae5a4SJacob Faibussowitsch {
1859a5526d50SJunchao Zhang   PetscSF multi = NULL;
186095fce210SBarry Smith 
186195fce210SBarry Smith   PetscFunctionBegin;
186295fce210SBarry Smith   PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1);
18639566063dSJacob Faibussowitsch   PetscCall(PetscSFGetMultiSF(sf, &multi));
18649566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceEnd(multi, unit, leafdata, multirootdata, MPI_REPLACE));
18653ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
186695fce210SBarry Smith }
186795fce210SBarry Smith 
186895fce210SBarry Smith /*@C
1869cab54364SBarry Smith    PetscSFScatterBegin - begin pointwise scatter operation from multi-roots to leaves, to be completed with `PetscSFScatterEnd()`
187095fce210SBarry Smith 
187195fce210SBarry Smith    Collective
187295fce210SBarry Smith 
18734165533cSJose E. Roman    Input Parameters:
187495fce210SBarry Smith +  sf - star forest
187595fce210SBarry Smith .  unit - data type
187695fce210SBarry Smith -  multirootdata - root buffer to send to each leaf, one unit of data per leaf
187795fce210SBarry Smith 
18784165533cSJose E. Roman    Output Parameter:
187995fce210SBarry Smith .  leafdata - leaf data to be update with personal data from each respective root
188095fce210SBarry Smith 
188195fce210SBarry Smith    Level: intermediate
188295fce210SBarry Smith 
188320662ed9SBarry Smith .seealso: `PetscSF`, `PetscSFComputeDegreeBegin()`, `PetscSFScatterEnd()`
188495fce210SBarry Smith @*/
1885d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFScatterBegin(PetscSF sf, MPI_Datatype unit, const void *multirootdata, void *leafdata)
1886d71ae5a4SJacob Faibussowitsch {
1887a5526d50SJunchao Zhang   PetscSF multi = NULL;
188895fce210SBarry Smith 
188995fce210SBarry Smith   PetscFunctionBegin;
189095fce210SBarry Smith   PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1);
18919566063dSJacob Faibussowitsch   PetscCall(PetscSFSetUp(sf));
18929566063dSJacob Faibussowitsch   PetscCall(PetscSFGetMultiSF(sf, &multi));
18939566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(multi, unit, multirootdata, leafdata, MPI_REPLACE));
18943ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
189595fce210SBarry Smith }
189695fce210SBarry Smith 
189795fce210SBarry Smith /*@C
1898cab54364SBarry Smith    PetscSFScatterEnd - ends pointwise scatter operation that was started with `PetscSFScatterBegin()`
189995fce210SBarry Smith 
190095fce210SBarry Smith    Collective
190195fce210SBarry Smith 
19024165533cSJose E. Roman    Input Parameters:
190395fce210SBarry Smith +  sf - star forest
190495fce210SBarry Smith .  unit - data type
190595fce210SBarry Smith -  multirootdata - root buffer to send to each leaf, one unit of data per leaf
190695fce210SBarry Smith 
19074165533cSJose E. Roman    Output Parameter:
190895fce210SBarry Smith .  leafdata - leaf data to be update with personal data from each respective root
190995fce210SBarry Smith 
191095fce210SBarry Smith    Level: intermediate
191195fce210SBarry Smith 
191220662ed9SBarry Smith .seealso: `PetscSF`, `PetscSFComputeDegreeEnd()`, `PetscSFScatterBegin()`
191395fce210SBarry Smith @*/
1914d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFScatterEnd(PetscSF sf, MPI_Datatype unit, const void *multirootdata, void *leafdata)
1915d71ae5a4SJacob Faibussowitsch {
1916a5526d50SJunchao Zhang   PetscSF multi = NULL;
191795fce210SBarry Smith 
191895fce210SBarry Smith   PetscFunctionBegin;
191995fce210SBarry Smith   PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1);
19209566063dSJacob Faibussowitsch   PetscCall(PetscSFGetMultiSF(sf, &multi));
19219566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(multi, unit, multirootdata, leafdata, MPI_REPLACE));
19223ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
192395fce210SBarry Smith }
1924a7b3aa13SAta Mesgarnejad 
1925d71ae5a4SJacob Faibussowitsch static PetscErrorCode PetscSFCheckLeavesUnique_Private(PetscSF sf)
1926d71ae5a4SJacob Faibussowitsch {
1927a072220fSLawrence Mitchell   PetscInt        i, n, nleaves;
1928a072220fSLawrence Mitchell   const PetscInt *ilocal = NULL;
1929a072220fSLawrence Mitchell   PetscHSetI      seen;
1930a072220fSLawrence Mitchell 
1931a072220fSLawrence Mitchell   PetscFunctionBegin;
1932b458e8f1SJose E. Roman   if (PetscDefined(USE_DEBUG)) {
19339566063dSJacob Faibussowitsch     PetscCall(PetscSFGetGraph(sf, NULL, &nleaves, &ilocal, NULL));
19349566063dSJacob Faibussowitsch     PetscCall(PetscHSetICreate(&seen));
1935a072220fSLawrence Mitchell     for (i = 0; i < nleaves; i++) {
1936a072220fSLawrence Mitchell       const PetscInt leaf = ilocal ? ilocal[i] : i;
19379566063dSJacob Faibussowitsch       PetscCall(PetscHSetIAdd(seen, leaf));
1938a072220fSLawrence Mitchell     }
19399566063dSJacob Faibussowitsch     PetscCall(PetscHSetIGetSize(seen, &n));
194008401ef6SPierre Jolivet     PetscCheck(n == nleaves, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Provided leaves have repeated values: all leaves must be unique");
19419566063dSJacob Faibussowitsch     PetscCall(PetscHSetIDestroy(&seen));
1942b458e8f1SJose E. Roman   }
19433ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
1944a072220fSLawrence Mitchell }
194554729392SStefano Zampini 
1946a7b3aa13SAta Mesgarnejad /*@
1947cab54364SBarry Smith   PetscSFCompose - Compose a new `PetscSF` by putting the second `PetscSF` under the first one in a top (roots) down (leaves) view
1948a7b3aa13SAta Mesgarnejad 
1949a7b3aa13SAta Mesgarnejad   Input Parameters:
1950cab54364SBarry Smith + sfA - The first `PetscSF`
1951cab54364SBarry Smith - sfB - The second `PetscSF`
1952a7b3aa13SAta Mesgarnejad 
1953a7b3aa13SAta Mesgarnejad   Output Parameters:
1954cab54364SBarry Smith . sfBA - The composite `PetscSF`
1955a7b3aa13SAta Mesgarnejad 
1956a7b3aa13SAta Mesgarnejad   Level: developer
1957a7b3aa13SAta Mesgarnejad 
1958a072220fSLawrence Mitchell   Notes:
1959cab54364SBarry Smith   Currently, the two `PetscSF`s must be defined on congruent communicators and they must be true star
196054729392SStefano Zampini   forests, i.e. the same leaf is not connected with different roots.
196154729392SStefano Zampini 
196220662ed9SBarry Smith   `sfA`'s leaf space and `sfB`'s root space might be partially overlapped. The composition builds
196320662ed9SBarry Smith   a graph with `sfA`'s roots and `sfB`'s leaves only when there is a path between them. Unconnected
196420662ed9SBarry Smith   nodes (roots or leaves) are not in `sfBA`. Doing a `PetscSFBcastBegin()`/`PetscSFBcastEnd()` on the new `PetscSF` is equivalent to doing a
196520662ed9SBarry Smith   `PetscSFBcastBegin()`/`PetscSFBcastEnd()` on `sfA`, then a `PetscSFBcastBegin()`/`PetscSFBcastEnd()` on `sfB`, on connected nodes.
1966a072220fSLawrence Mitchell 
1967db781477SPatrick Sanan .seealso: `PetscSF`, `PetscSFComposeInverse()`, `PetscSFGetGraph()`, `PetscSFSetGraph()`
1968a7b3aa13SAta Mesgarnejad @*/
1969d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFCompose(PetscSF sfA, PetscSF sfB, PetscSF *sfBA)
1970d71ae5a4SJacob Faibussowitsch {
1971a7b3aa13SAta Mesgarnejad   const PetscSFNode *remotePointsA, *remotePointsB;
1972d41018fbSJunchao Zhang   PetscSFNode       *remotePointsBA = NULL, *reorderedRemotePointsA = NULL, *leafdataB;
197354729392SStefano Zampini   const PetscInt    *localPointsA, *localPointsB;
197454729392SStefano Zampini   PetscInt          *localPointsBA;
197554729392SStefano Zampini   PetscInt           i, numRootsA, numLeavesA, numRootsB, numLeavesB, minleaf, maxleaf, numLeavesBA;
197654729392SStefano Zampini   PetscBool          denseB;
1977a7b3aa13SAta Mesgarnejad 
1978a7b3aa13SAta Mesgarnejad   PetscFunctionBegin;
1979a7b3aa13SAta Mesgarnejad   PetscValidHeaderSpecific(sfA, PETSCSF_CLASSID, 1);
198029046d53SLisandro Dalcin   PetscSFCheckGraphSet(sfA, 1);
198129046d53SLisandro Dalcin   PetscValidHeaderSpecific(sfB, PETSCSF_CLASSID, 2);
198229046d53SLisandro Dalcin   PetscSFCheckGraphSet(sfB, 2);
198354729392SStefano Zampini   PetscCheckSameComm(sfA, 1, sfB, 2);
198429046d53SLisandro Dalcin   PetscValidPointer(sfBA, 3);
19859566063dSJacob Faibussowitsch   PetscCall(PetscSFCheckLeavesUnique_Private(sfA));
19869566063dSJacob Faibussowitsch   PetscCall(PetscSFCheckLeavesUnique_Private(sfB));
198754729392SStefano Zampini 
19889566063dSJacob Faibussowitsch   PetscCall(PetscSFGetGraph(sfA, &numRootsA, &numLeavesA, &localPointsA, &remotePointsA));
19899566063dSJacob Faibussowitsch   PetscCall(PetscSFGetGraph(sfB, &numRootsB, &numLeavesB, &localPointsB, &remotePointsB));
199020662ed9SBarry Smith   /* Make sure that PetscSFBcast{Begin, End}(sfB, ...) works with root data of size
199120662ed9SBarry Smith      numRootsB; otherwise, garbage will be broadcasted.
199220662ed9SBarry Smith      Example (comm size = 1):
199320662ed9SBarry Smith      sfA: 0 <- (0, 0)
199420662ed9SBarry Smith      sfB: 100 <- (0, 0)
199520662ed9SBarry Smith           101 <- (0, 1)
199620662ed9SBarry Smith      Here, we have remotePointsA = [(0, 0)], but for remotePointsA to be a valid tartget
199720662ed9SBarry Smith      of sfB, it has to be recasted as [(0, 0), (-1, -1)] so that points 100 and 101 would
199820662ed9SBarry Smith      receive (0, 0) and (-1, -1), respectively, when PetscSFBcast(sfB, ...) is called on
199920662ed9SBarry Smith      remotePointsA; if not recasted, point 101 would receive a garbage value.             */
20009566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(numRootsB, &reorderedRemotePointsA));
200154729392SStefano Zampini   for (i = 0; i < numRootsB; i++) {
200254729392SStefano Zampini     reorderedRemotePointsA[i].rank  = -1;
200354729392SStefano Zampini     reorderedRemotePointsA[i].index = -1;
200454729392SStefano Zampini   }
200554729392SStefano Zampini   for (i = 0; i < numLeavesA; i++) {
20060ea77edaSksagiyam     PetscInt localp = localPointsA ? localPointsA[i] : i;
20070ea77edaSksagiyam 
20080ea77edaSksagiyam     if (localp >= numRootsB) continue;
20090ea77edaSksagiyam     reorderedRemotePointsA[localp] = remotePointsA[i];
201054729392SStefano Zampini   }
2011d41018fbSJunchao Zhang   remotePointsA = reorderedRemotePointsA;
20129566063dSJacob Faibussowitsch   PetscCall(PetscSFGetLeafRange(sfB, &minleaf, &maxleaf));
20139566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(maxleaf - minleaf + 1, &leafdataB));
20140ea77edaSksagiyam   for (i = 0; i < maxleaf - minleaf + 1; i++) {
20150ea77edaSksagiyam     leafdataB[i].rank  = -1;
20160ea77edaSksagiyam     leafdataB[i].index = -1;
20170ea77edaSksagiyam   }
20189566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastBegin(sfB, MPIU_2INT, remotePointsA, leafdataB - minleaf, MPI_REPLACE));
20199566063dSJacob Faibussowitsch   PetscCall(PetscSFBcastEnd(sfB, MPIU_2INT, remotePointsA, leafdataB - minleaf, MPI_REPLACE));
20209566063dSJacob Faibussowitsch   PetscCall(PetscFree(reorderedRemotePointsA));
2021d41018fbSJunchao Zhang 
202254729392SStefano Zampini   denseB = (PetscBool)!localPointsB;
202354729392SStefano Zampini   for (i = 0, numLeavesBA = 0; i < numLeavesB; i++) {
202454729392SStefano Zampini     if (leafdataB[localPointsB ? localPointsB[i] - minleaf : i].rank == -1) denseB = PETSC_FALSE;
202554729392SStefano Zampini     else numLeavesBA++;
202654729392SStefano Zampini   }
202754729392SStefano Zampini   if (denseB) {
2028d41018fbSJunchao Zhang     localPointsBA  = NULL;
2029d41018fbSJunchao Zhang     remotePointsBA = leafdataB;
2030d41018fbSJunchao Zhang   } else {
20319566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(numLeavesBA, &localPointsBA));
20329566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(numLeavesBA, &remotePointsBA));
203354729392SStefano Zampini     for (i = 0, numLeavesBA = 0; i < numLeavesB; i++) {
203454729392SStefano Zampini       const PetscInt l = localPointsB ? localPointsB[i] : i;
203554729392SStefano Zampini 
203654729392SStefano Zampini       if (leafdataB[l - minleaf].rank == -1) continue;
203754729392SStefano Zampini       remotePointsBA[numLeavesBA] = leafdataB[l - minleaf];
203854729392SStefano Zampini       localPointsBA[numLeavesBA]  = l;
203954729392SStefano Zampini       numLeavesBA++;
204054729392SStefano Zampini     }
20419566063dSJacob Faibussowitsch     PetscCall(PetscFree(leafdataB));
2042d41018fbSJunchao Zhang   }
20439566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)sfA), sfBA));
20449566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(*sfBA));
20459566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(*sfBA, numRootsA, numLeavesBA, localPointsBA, PETSC_OWN_POINTER, remotePointsBA, PETSC_OWN_POINTER));
20463ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2047a7b3aa13SAta Mesgarnejad }
20481c6ba672SJunchao Zhang 
204904c0ada0SJunchao Zhang /*@
2050cab54364SBarry Smith   PetscSFComposeInverse - Compose a new `PetscSF` by putting the inverse of the second `PetscSF` under the first one
205104c0ada0SJunchao Zhang 
205204c0ada0SJunchao Zhang   Input Parameters:
2053cab54364SBarry Smith + sfA - The first `PetscSF`
2054cab54364SBarry Smith - sfB - The second `PetscSF`
205504c0ada0SJunchao Zhang 
205604c0ada0SJunchao Zhang   Output Parameters:
2057cab54364SBarry Smith . sfBA - The composite `PetscSF`.
205804c0ada0SJunchao Zhang 
205904c0ada0SJunchao Zhang   Level: developer
206004c0ada0SJunchao Zhang 
206154729392SStefano Zampini   Notes:
206220662ed9SBarry Smith   Currently, the two `PetscSF`s must be defined on congruent communicators and they must be true star
206354729392SStefano Zampini   forests, i.e. the same leaf is not connected with different roots. Even more, all roots of the
206420662ed9SBarry Smith   second `PetscSF` must have a degree of 1, i.e., no roots have more than one leaf connected.
206554729392SStefano Zampini 
206620662ed9SBarry Smith   `sfA`'s leaf space and `sfB`'s leaf space might be partially overlapped. The composition builds
206720662ed9SBarry Smith   a graph with `sfA`'s roots and `sfB`'s roots only when there is a path between them. Unconnected
206820662ed9SBarry Smith   roots are not in `sfBA`. Doing a `PetscSFBcastBegin()`/`PetscSFBcastEnd()` on the new `PetscSF` is equivalent to doing a `PetscSFBcastBegin()`/`PetscSFBcastEnd()`
206920662ed9SBarry Smith   on `sfA`, then
207020662ed9SBarry Smith   a `PetscSFReduceBegin()`/`PetscSFReduceEnd()` on `sfB`, on connected roots.
207154729392SStefano Zampini 
2072db781477SPatrick Sanan .seealso: `PetscSF`, `PetscSFCompose()`, `PetscSFGetGraph()`, `PetscSFSetGraph()`, `PetscSFCreateInverseSF()`
207304c0ada0SJunchao Zhang @*/
2074d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFComposeInverse(PetscSF sfA, PetscSF sfB, PetscSF *sfBA)
2075d71ae5a4SJacob Faibussowitsch {
207604c0ada0SJunchao Zhang   const PetscSFNode *remotePointsA, *remotePointsB;
207704c0ada0SJunchao Zhang   PetscSFNode       *remotePointsBA;
207804c0ada0SJunchao Zhang   const PetscInt    *localPointsA, *localPointsB;
207954729392SStefano Zampini   PetscSFNode       *reorderedRemotePointsA = NULL;
208054729392SStefano Zampini   PetscInt           i, numRootsA, numLeavesA, numLeavesBA, numRootsB, numLeavesB, minleaf, maxleaf, *localPointsBA;
20815b0d146aSStefano Zampini   MPI_Op             op;
20825b0d146aSStefano Zampini #if defined(PETSC_USE_64BIT_INDICES)
20835b0d146aSStefano Zampini   PetscBool iswin;
20845b0d146aSStefano Zampini #endif
208504c0ada0SJunchao Zhang 
208604c0ada0SJunchao Zhang   PetscFunctionBegin;
208704c0ada0SJunchao Zhang   PetscValidHeaderSpecific(sfA, PETSCSF_CLASSID, 1);
208804c0ada0SJunchao Zhang   PetscSFCheckGraphSet(sfA, 1);
208904c0ada0SJunchao Zhang   PetscValidHeaderSpecific(sfB, PETSCSF_CLASSID, 2);
209004c0ada0SJunchao Zhang   PetscSFCheckGraphSet(sfB, 2);
209154729392SStefano Zampini   PetscCheckSameComm(sfA, 1, sfB, 2);
209204c0ada0SJunchao Zhang   PetscValidPointer(sfBA, 3);
20939566063dSJacob Faibussowitsch   PetscCall(PetscSFCheckLeavesUnique_Private(sfA));
20949566063dSJacob Faibussowitsch   PetscCall(PetscSFCheckLeavesUnique_Private(sfB));
209554729392SStefano Zampini 
20969566063dSJacob Faibussowitsch   PetscCall(PetscSFGetGraph(sfA, &numRootsA, &numLeavesA, &localPointsA, &remotePointsA));
20979566063dSJacob Faibussowitsch   PetscCall(PetscSFGetGraph(sfB, &numRootsB, &numLeavesB, &localPointsB, &remotePointsB));
20985b0d146aSStefano Zampini 
20995b0d146aSStefano Zampini   /* TODO: Check roots of sfB have degree of 1 */
21005b0d146aSStefano Zampini   /* Once we implement it, we can replace the MPI_MAXLOC
210183df288dSJunchao Zhang      with MPI_REPLACE. In that case, MPI_MAXLOC and MPI_REPLACE have the same effect.
21025b0d146aSStefano Zampini      We use MPI_MAXLOC only to have a deterministic output from this routine if
21035b0d146aSStefano Zampini      the root condition is not meet.
21045b0d146aSStefano Zampini    */
21055b0d146aSStefano Zampini   op = MPI_MAXLOC;
21065b0d146aSStefano Zampini #if defined(PETSC_USE_64BIT_INDICES)
21075b0d146aSStefano Zampini   /* we accept a non-deterministic output (if any) with PETSCSFWINDOW, since MPI_MAXLOC cannot operate on MPIU_2INT with MPI_Accumulate */
21089566063dSJacob Faibussowitsch   PetscCall(PetscObjectTypeCompare((PetscObject)sfB, PETSCSFWINDOW, &iswin));
210983df288dSJunchao Zhang   if (iswin) op = MPI_REPLACE;
21105b0d146aSStefano Zampini #endif
21115b0d146aSStefano Zampini 
21129566063dSJacob Faibussowitsch   PetscCall(PetscSFGetLeafRange(sfB, &minleaf, &maxleaf));
21139566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(maxleaf - minleaf + 1, &reorderedRemotePointsA));
211454729392SStefano Zampini   for (i = 0; i < maxleaf - minleaf + 1; i++) {
211554729392SStefano Zampini     reorderedRemotePointsA[i].rank  = -1;
211654729392SStefano Zampini     reorderedRemotePointsA[i].index = -1;
211754729392SStefano Zampini   }
211854729392SStefano Zampini   if (localPointsA) {
211954729392SStefano Zampini     for (i = 0; i < numLeavesA; i++) {
212054729392SStefano Zampini       if (localPointsA[i] > maxleaf || localPointsA[i] < minleaf) continue;
212154729392SStefano Zampini       reorderedRemotePointsA[localPointsA[i] - minleaf] = remotePointsA[i];
212254729392SStefano Zampini     }
212354729392SStefano Zampini   } else {
212454729392SStefano Zampini     for (i = 0; i < numLeavesA; i++) {
212554729392SStefano Zampini       if (i > maxleaf || i < minleaf) continue;
212654729392SStefano Zampini       reorderedRemotePointsA[i - minleaf] = remotePointsA[i];
212754729392SStefano Zampini     }
212854729392SStefano Zampini   }
212954729392SStefano Zampini 
21309566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(numRootsB, &localPointsBA));
21319566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(numRootsB, &remotePointsBA));
213254729392SStefano Zampini   for (i = 0; i < numRootsB; i++) {
213354729392SStefano Zampini     remotePointsBA[i].rank  = -1;
213454729392SStefano Zampini     remotePointsBA[i].index = -1;
213554729392SStefano Zampini   }
213654729392SStefano Zampini 
21379566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceBegin(sfB, MPIU_2INT, reorderedRemotePointsA - minleaf, remotePointsBA, op));
21389566063dSJacob Faibussowitsch   PetscCall(PetscSFReduceEnd(sfB, MPIU_2INT, reorderedRemotePointsA - minleaf, remotePointsBA, op));
21399566063dSJacob Faibussowitsch   PetscCall(PetscFree(reorderedRemotePointsA));
214054729392SStefano Zampini   for (i = 0, numLeavesBA = 0; i < numRootsB; i++) {
214154729392SStefano Zampini     if (remotePointsBA[i].rank == -1) continue;
214254729392SStefano Zampini     remotePointsBA[numLeavesBA].rank  = remotePointsBA[i].rank;
214354729392SStefano Zampini     remotePointsBA[numLeavesBA].index = remotePointsBA[i].index;
214454729392SStefano Zampini     localPointsBA[numLeavesBA]        = i;
214554729392SStefano Zampini     numLeavesBA++;
214654729392SStefano Zampini   }
21479566063dSJacob Faibussowitsch   PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)sfA), sfBA));
21489566063dSJacob Faibussowitsch   PetscCall(PetscSFSetFromOptions(*sfBA));
21499566063dSJacob Faibussowitsch   PetscCall(PetscSFSetGraph(*sfBA, numRootsA, numLeavesBA, localPointsBA, PETSC_OWN_POINTER, remotePointsBA, PETSC_OWN_POINTER));
21503ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
215104c0ada0SJunchao Zhang }
215204c0ada0SJunchao Zhang 
21531c6ba672SJunchao Zhang /*
2154cab54364SBarry Smith   PetscSFCreateLocalSF_Private - Creates a local `PetscSF` that only has intra-process edges of the global `PetscSF`
21551c6ba672SJunchao Zhang 
21561c6ba672SJunchao Zhang   Input Parameters:
2157cab54364SBarry Smith . sf - The global `PetscSF`
21581c6ba672SJunchao Zhang 
21591c6ba672SJunchao Zhang   Output Parameters:
2160cab54364SBarry Smith . out - The local `PetscSF`
2161cab54364SBarry Smith 
2162cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFCreate()`
21631c6ba672SJunchao Zhang  */
2164d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFCreateLocalSF_Private(PetscSF sf, PetscSF *out)
2165d71ae5a4SJacob Faibussowitsch {
21661c6ba672SJunchao Zhang   MPI_Comm           comm;
21671c6ba672SJunchao Zhang   PetscMPIInt        myrank;
21681c6ba672SJunchao Zhang   const PetscInt    *ilocal;
21691c6ba672SJunchao Zhang   const PetscSFNode *iremote;
21701c6ba672SJunchao Zhang   PetscInt           i, j, nroots, nleaves, lnleaves, *lilocal;
21711c6ba672SJunchao Zhang   PetscSFNode       *liremote;
21721c6ba672SJunchao Zhang   PetscSF            lsf;
21731c6ba672SJunchao Zhang 
21741c6ba672SJunchao Zhang   PetscFunctionBegin;
21751c6ba672SJunchao Zhang   PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1);
2176dbbe0bcdSBarry Smith   if (sf->ops->CreateLocalSF) PetscUseTypeMethod(sf, CreateLocalSF, out);
2177dbbe0bcdSBarry Smith   else {
21781c6ba672SJunchao Zhang     /* Could use PetscSFCreateEmbeddedLeafSF, but since we know the comm is PETSC_COMM_SELF, we can make it fast */
21799566063dSJacob Faibussowitsch     PetscCall(PetscObjectGetComm((PetscObject)sf, &comm));
21809566063dSJacob Faibussowitsch     PetscCallMPI(MPI_Comm_rank(comm, &myrank));
21811c6ba672SJunchao Zhang 
21821c6ba672SJunchao Zhang     /* Find out local edges and build a local SF */
21839566063dSJacob Faibussowitsch     PetscCall(PetscSFGetGraph(sf, &nroots, &nleaves, &ilocal, &iremote));
21849371c9d4SSatish Balay     for (i = lnleaves = 0; i < nleaves; i++) {
21859371c9d4SSatish Balay       if (iremote[i].rank == (PetscInt)myrank) lnleaves++;
21869371c9d4SSatish Balay     }
21879566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(lnleaves, &lilocal));
21889566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(lnleaves, &liremote));
21891c6ba672SJunchao Zhang 
21901c6ba672SJunchao Zhang     for (i = j = 0; i < nleaves; i++) {
21911c6ba672SJunchao Zhang       if (iremote[i].rank == (PetscInt)myrank) {
21921c6ba672SJunchao Zhang         lilocal[j]        = ilocal ? ilocal[i] : i; /* ilocal=NULL for contiguous storage */
21931c6ba672SJunchao Zhang         liremote[j].rank  = 0;                      /* rank in PETSC_COMM_SELF */
21941c6ba672SJunchao Zhang         liremote[j].index = iremote[i].index;
21951c6ba672SJunchao Zhang         j++;
21961c6ba672SJunchao Zhang       }
21971c6ba672SJunchao Zhang     }
21989566063dSJacob Faibussowitsch     PetscCall(PetscSFCreate(PETSC_COMM_SELF, &lsf));
21999566063dSJacob Faibussowitsch     PetscCall(PetscSFSetFromOptions(lsf));
22009566063dSJacob Faibussowitsch     PetscCall(PetscSFSetGraph(lsf, nroots, lnleaves, lilocal, PETSC_OWN_POINTER, liremote, PETSC_OWN_POINTER));
22019566063dSJacob Faibussowitsch     PetscCall(PetscSFSetUp(lsf));
22021c6ba672SJunchao Zhang     *out = lsf;
22031c6ba672SJunchao Zhang   }
22043ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
22051c6ba672SJunchao Zhang }
2206dd5b3ca6SJunchao Zhang 
2207dd5b3ca6SJunchao Zhang /* Similar to PetscSFBcast, but only Bcast to leaves on rank 0 */
2208d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFBcastToZero_Private(PetscSF sf, MPI_Datatype unit, const void *rootdata, void *leafdata)
2209d71ae5a4SJacob Faibussowitsch {
2210eb02082bSJunchao Zhang   PetscMemType rootmtype, leafmtype;
2211dd5b3ca6SJunchao Zhang 
2212dd5b3ca6SJunchao Zhang   PetscFunctionBegin;
2213dd5b3ca6SJunchao Zhang   PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1);
22149566063dSJacob Faibussowitsch   PetscCall(PetscSFSetUp(sf));
22159566063dSJacob Faibussowitsch   PetscCall(PetscLogEventBegin(PETSCSF_BcastBegin, sf, 0, 0, 0));
22169566063dSJacob Faibussowitsch   PetscCall(PetscGetMemType(rootdata, &rootmtype));
22179566063dSJacob Faibussowitsch   PetscCall(PetscGetMemType(leafdata, &leafmtype));
2218dbbe0bcdSBarry Smith   PetscUseTypeMethod(sf, BcastToZero, unit, rootmtype, rootdata, leafmtype, leafdata);
22199566063dSJacob Faibussowitsch   PetscCall(PetscLogEventEnd(PETSCSF_BcastBegin, sf, 0, 0, 0));
22203ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2221dd5b3ca6SJunchao Zhang }
2222dd5b3ca6SJunchao Zhang 
2223157edd7aSVaclav Hapla /*@
2224cab54364SBarry Smith   PetscSFConcatenate - concatenate multiple `PetscSF` into one
2225157edd7aSVaclav Hapla 
2226157edd7aSVaclav Hapla   Input Parameters:
2227157edd7aSVaclav Hapla + comm - the communicator
2228cab54364SBarry Smith . nsfs - the number of input `PetscSF`
2229cab54364SBarry Smith . sfs  - the array of input `PetscSF`
22301f40158dSVaclav Hapla . rootMode - the root mode specifying how roots are handled
223120662ed9SBarry Smith - leafOffsets - the array of local leaf offsets, one for each input `PetscSF`, or `NULL` for contiguous storage
2232157edd7aSVaclav Hapla 
2233157edd7aSVaclav Hapla   Output Parameters:
2234cab54364SBarry Smith . newsf - The resulting `PetscSF`
2235157edd7aSVaclav Hapla 
22361f40158dSVaclav Hapla   Level: advanced
2237157edd7aSVaclav Hapla 
2238157edd7aSVaclav Hapla   Notes:
223920662ed9SBarry Smith   The communicator of all `PetscSF`s in `sfs` must be comm.
2240157edd7aSVaclav Hapla 
224120662ed9SBarry Smith   Leaves are always concatenated locally, keeping them ordered by the input `PetscSF` index and original local order.
224220662ed9SBarry Smith 
224320662ed9SBarry Smith   The offsets in `leafOffsets` are added to the original leaf indices.
224420662ed9SBarry Smith 
224520662ed9SBarry Smith   If all input SFs use contiguous leaf storage (`ilocal` = `NULL`), `leafOffsets` can be passed as `NULL` as well.
224620662ed9SBarry Smith   In this case, `NULL` is also passed as `ilocal` to the resulting `PetscSF`.
224720662ed9SBarry Smith 
224820662ed9SBarry Smith   If any input `PetscSF` has non-null `ilocal`, `leafOffsets` is needed to distinguish leaves from different input `PetscSF`s.
2249157edd7aSVaclav Hapla   In this case, user is responsible to provide correct offsets so that the resulting leaves are unique (otherwise an error occurs).
2250157edd7aSVaclav Hapla 
225120662ed9SBarry Smith   All root modes retain the essential connectivity condition.
225220662ed9SBarry Smith   If two leaves of the same input `PetscSF` are connected (sharing the same root), they are also connected in the output `PetscSF`.
225320662ed9SBarry Smith   Parameter `rootMode` controls how the input root spaces are combined.
225420662ed9SBarry Smith   For `PETSCSF_CONCATENATE_ROOTMODE_SHARED`, the root space is considered the same for each input `PetscSF` (checked in debug mode)
225520662ed9SBarry Smith   and is also the same in the output `PetscSF`.
22561f40158dSVaclav Hapla   For `PETSCSF_CONCATENATE_ROOTMODE_LOCAL` and `PETSCSF_CONCATENATE_ROOTMODE_GLOBAL`, the input root spaces are taken as separate and joined.
22571f40158dSVaclav Hapla   `PETSCSF_CONCATENATE_ROOTMODE_LOCAL` joins the root spaces locally;
225820662ed9SBarry Smith   roots of sfs[0], sfs[1], sfs[2], ... are joined on each rank separately, ordered by input `PetscSF` and original local index, and renumbered contiguously.
22591f40158dSVaclav Hapla   `PETSCSF_CONCATENATE_ROOTMODE_GLOBAL` joins the root spaces globally;
226020662ed9SBarry Smith   roots of sfs[0], sfs[1], sfs[2, ... are joined globally, ordered by input `PetscSF` index and original global index, and renumbered contiguously;
22611f40158dSVaclav Hapla   the original root ranks are ignored.
22621f40158dSVaclav Hapla   For both `PETSCSF_CONCATENATE_ROOTMODE_LOCAL` and `PETSCSF_CONCATENATE_ROOTMODE_GLOBAL`,
226320662ed9SBarry Smith   the output `PetscSF`'s root layout is such that the local number of roots is a sum of the input `PetscSF`'s local numbers of roots on each rank
226420662ed9SBarry Smith   to keep the load balancing.
226520662ed9SBarry Smith   However, for `PETSCSF_CONCATENATE_ROOTMODE_GLOBAL`, roots can move to different ranks.
22661f40158dSVaclav Hapla 
22671f40158dSVaclav Hapla    Example:
22681f40158dSVaclav Hapla    We can use src/vec/is/sf/tests/ex18.c to compare the root modes. By running
226920662ed9SBarry Smith .vb
227020662ed9SBarry Smith   make -C $PETSC_DIR/src/vec/is/sf/tests ex18
227120662ed9SBarry Smith   for m in {local,global,shared}; do
227220662ed9SBarry Smith     mpirun -n 2 $PETSC_DIR/src/vec/is/sf/tests/ex18 -nsfs 2 -n 2 -root_mode $m -sf_view
227320662ed9SBarry Smith   done
227420662ed9SBarry Smith .ve
227520662ed9SBarry Smith    we generate two identical `PetscSF`s sf_0 and sf_1,
227620662ed9SBarry Smith .vb
227720662ed9SBarry Smith   PetscSF Object: sf_0 2 MPI processes
227820662ed9SBarry Smith     type: basic
227920662ed9SBarry Smith     rank #leaves #roots
228020662ed9SBarry Smith     [ 0]       4      2
228120662ed9SBarry Smith     [ 1]       4      2
228220662ed9SBarry Smith     leaves      roots       roots in global numbering
228320662ed9SBarry Smith     ( 0,  0) <- ( 0,  0)  =   0
228420662ed9SBarry Smith     ( 0,  1) <- ( 0,  1)  =   1
228520662ed9SBarry Smith     ( 0,  2) <- ( 1,  0)  =   2
228620662ed9SBarry Smith     ( 0,  3) <- ( 1,  1)  =   3
228720662ed9SBarry Smith     ( 1,  0) <- ( 0,  0)  =   0
228820662ed9SBarry Smith     ( 1,  1) <- ( 0,  1)  =   1
228920662ed9SBarry Smith     ( 1,  2) <- ( 1,  0)  =   2
229020662ed9SBarry Smith     ( 1,  3) <- ( 1,  1)  =   3
229120662ed9SBarry Smith .ve
229220662ed9SBarry Smith    and pass them to `PetscSFConcatenate()` along with different choices of `rootMode`, yielding different result_sf:
229320662ed9SBarry Smith .vb
229420662ed9SBarry Smith   rootMode = local:
229520662ed9SBarry Smith   PetscSF Object: result_sf 2 MPI processes
229620662ed9SBarry Smith     type: basic
229720662ed9SBarry Smith     rank #leaves #roots
229820662ed9SBarry Smith     [ 0]       8      4
229920662ed9SBarry Smith     [ 1]       8      4
230020662ed9SBarry Smith     leaves      roots       roots in global numbering
230120662ed9SBarry Smith     ( 0,  0) <- ( 0,  0)  =   0
230220662ed9SBarry Smith     ( 0,  1) <- ( 0,  1)  =   1
230320662ed9SBarry Smith     ( 0,  2) <- ( 1,  0)  =   4
230420662ed9SBarry Smith     ( 0,  3) <- ( 1,  1)  =   5
230520662ed9SBarry Smith     ( 0,  4) <- ( 0,  2)  =   2
230620662ed9SBarry Smith     ( 0,  5) <- ( 0,  3)  =   3
230720662ed9SBarry Smith     ( 0,  6) <- ( 1,  2)  =   6
230820662ed9SBarry Smith     ( 0,  7) <- ( 1,  3)  =   7
230920662ed9SBarry Smith     ( 1,  0) <- ( 0,  0)  =   0
231020662ed9SBarry Smith     ( 1,  1) <- ( 0,  1)  =   1
231120662ed9SBarry Smith     ( 1,  2) <- ( 1,  0)  =   4
231220662ed9SBarry Smith     ( 1,  3) <- ( 1,  1)  =   5
231320662ed9SBarry Smith     ( 1,  4) <- ( 0,  2)  =   2
231420662ed9SBarry Smith     ( 1,  5) <- ( 0,  3)  =   3
231520662ed9SBarry Smith     ( 1,  6) <- ( 1,  2)  =   6
231620662ed9SBarry Smith     ( 1,  7) <- ( 1,  3)  =   7
231720662ed9SBarry Smith 
231820662ed9SBarry Smith   rootMode = global:
231920662ed9SBarry Smith   PetscSF Object: result_sf 2 MPI processes
232020662ed9SBarry Smith     type: basic
232120662ed9SBarry Smith     rank #leaves #roots
232220662ed9SBarry Smith     [ 0]       8      4
232320662ed9SBarry Smith     [ 1]       8      4
232420662ed9SBarry Smith     leaves      roots       roots in global numbering
232520662ed9SBarry Smith     ( 0,  0) <- ( 0,  0)  =   0
232620662ed9SBarry Smith     ( 0,  1) <- ( 0,  1)  =   1
232720662ed9SBarry Smith     ( 0,  2) <- ( 0,  2)  =   2
232820662ed9SBarry Smith     ( 0,  3) <- ( 0,  3)  =   3
232920662ed9SBarry Smith     ( 0,  4) <- ( 1,  0)  =   4
233020662ed9SBarry Smith     ( 0,  5) <- ( 1,  1)  =   5
233120662ed9SBarry Smith     ( 0,  6) <- ( 1,  2)  =   6
233220662ed9SBarry Smith     ( 0,  7) <- ( 1,  3)  =   7
233320662ed9SBarry Smith     ( 1,  0) <- ( 0,  0)  =   0
233420662ed9SBarry Smith     ( 1,  1) <- ( 0,  1)  =   1
233520662ed9SBarry Smith     ( 1,  2) <- ( 0,  2)  =   2
233620662ed9SBarry Smith     ( 1,  3) <- ( 0,  3)  =   3
233720662ed9SBarry Smith     ( 1,  4) <- ( 1,  0)  =   4
233820662ed9SBarry Smith     ( 1,  5) <- ( 1,  1)  =   5
233920662ed9SBarry Smith     ( 1,  6) <- ( 1,  2)  =   6
234020662ed9SBarry Smith     ( 1,  7) <- ( 1,  3)  =   7
234120662ed9SBarry Smith 
234220662ed9SBarry Smith   rootMode = shared:
234320662ed9SBarry Smith   PetscSF Object: result_sf 2 MPI processes
234420662ed9SBarry Smith     type: basic
234520662ed9SBarry Smith     rank #leaves #roots
234620662ed9SBarry Smith     [ 0]       8      2
234720662ed9SBarry Smith     [ 1]       8      2
234820662ed9SBarry Smith     leaves      roots       roots in global numbering
234920662ed9SBarry Smith     ( 0,  0) <- ( 0,  0)  =   0
235020662ed9SBarry Smith     ( 0,  1) <- ( 0,  1)  =   1
235120662ed9SBarry Smith     ( 0,  2) <- ( 1,  0)  =   2
235220662ed9SBarry Smith     ( 0,  3) <- ( 1,  1)  =   3
235320662ed9SBarry Smith     ( 0,  4) <- ( 0,  0)  =   0
235420662ed9SBarry Smith     ( 0,  5) <- ( 0,  1)  =   1
235520662ed9SBarry Smith     ( 0,  6) <- ( 1,  0)  =   2
235620662ed9SBarry Smith     ( 0,  7) <- ( 1,  1)  =   3
235720662ed9SBarry Smith     ( 1,  0) <- ( 0,  0)  =   0
235820662ed9SBarry Smith     ( 1,  1) <- ( 0,  1)  =   1
235920662ed9SBarry Smith     ( 1,  2) <- ( 1,  0)  =   2
236020662ed9SBarry Smith     ( 1,  3) <- ( 1,  1)  =   3
236120662ed9SBarry Smith     ( 1,  4) <- ( 0,  0)  =   0
236220662ed9SBarry Smith     ( 1,  5) <- ( 0,  1)  =   1
236320662ed9SBarry Smith     ( 1,  6) <- ( 1,  0)  =   2
236420662ed9SBarry Smith     ( 1,  7) <- ( 1,  1)  =   3
236520662ed9SBarry Smith .ve
23661f40158dSVaclav Hapla 
23671f40158dSVaclav Hapla .seealso: `PetscSF`, `PetscSFCompose()`, `PetscSFGetGraph()`, `PetscSFSetGraph()`, `PetscSFConcatenateRootMode`
2368157edd7aSVaclav Hapla @*/
23691f40158dSVaclav Hapla PetscErrorCode PetscSFConcatenate(MPI_Comm comm, PetscInt nsfs, PetscSF sfs[], PetscSFConcatenateRootMode rootMode, PetscInt leafOffsets[], PetscSF *newsf)
2370d71ae5a4SJacob Faibussowitsch {
2371157edd7aSVaclav Hapla   PetscInt     i, s, nLeaves, nRoots;
2372157edd7aSVaclav Hapla   PetscInt    *leafArrayOffsets;
2373157edd7aSVaclav Hapla   PetscInt    *ilocal_new;
2374157edd7aSVaclav Hapla   PetscSFNode *iremote_new;
2375157edd7aSVaclav Hapla   PetscBool    all_ilocal_null = PETSC_FALSE;
23761f40158dSVaclav Hapla   PetscLayout  glayout         = NULL;
23771f40158dSVaclav Hapla   PetscInt    *gremote         = NULL;
23781f40158dSVaclav Hapla   PetscMPIInt  rank, size;
2379157edd7aSVaclav Hapla 
2380157edd7aSVaclav Hapla   PetscFunctionBegin;
238112f479c1SVaclav Hapla   if (PetscDefined(USE_DEBUG)) {
2382157edd7aSVaclav Hapla     PetscSF dummy; /* just to have a PetscObject on comm for input validation */
2383157edd7aSVaclav Hapla 
23849566063dSJacob Faibussowitsch     PetscCall(PetscSFCreate(comm, &dummy));
2385157edd7aSVaclav Hapla     PetscValidLogicalCollectiveInt(dummy, nsfs, 2);
2386157edd7aSVaclav Hapla     PetscValidPointer(sfs, 3);
2387157edd7aSVaclav Hapla     for (i = 0; i < nsfs; i++) {
2388157edd7aSVaclav Hapla       PetscValidHeaderSpecific(sfs[i], PETSCSF_CLASSID, 3);
2389157edd7aSVaclav Hapla       PetscCheckSameComm(dummy, 1, sfs[i], 3);
2390157edd7aSVaclav Hapla     }
23911f40158dSVaclav Hapla     PetscValidLogicalCollectiveEnum(dummy, rootMode, 4);
2392157edd7aSVaclav Hapla     if (leafOffsets) PetscValidIntPointer(leafOffsets, 5);
2393157edd7aSVaclav Hapla     PetscValidPointer(newsf, 6);
23949566063dSJacob Faibussowitsch     PetscCall(PetscSFDestroy(&dummy));
2395157edd7aSVaclav Hapla   }
2396157edd7aSVaclav Hapla   if (!nsfs) {
23979566063dSJacob Faibussowitsch     PetscCall(PetscSFCreate(comm, newsf));
23989566063dSJacob Faibussowitsch     PetscCall(PetscSFSetGraph(*newsf, 0, 0, NULL, PETSC_OWN_POINTER, NULL, PETSC_OWN_POINTER));
23993ba16761SJacob Faibussowitsch     PetscFunctionReturn(PETSC_SUCCESS);
2400157edd7aSVaclav Hapla   }
24019566063dSJacob Faibussowitsch   PetscCallMPI(MPI_Comm_rank(comm, &rank));
24021f40158dSVaclav Hapla   PetscCallMPI(MPI_Comm_size(comm, &size));
2403157edd7aSVaclav Hapla 
24041f40158dSVaclav Hapla   /* Calculate leaf array offsets */
24059566063dSJacob Faibussowitsch   PetscCall(PetscMalloc1(nsfs + 1, &leafArrayOffsets));
2406157edd7aSVaclav Hapla   leafArrayOffsets[0] = 0;
2407157edd7aSVaclav Hapla   for (s = 0; s < nsfs; s++) {
2408157edd7aSVaclav Hapla     PetscInt nl;
2409157edd7aSVaclav Hapla 
24109566063dSJacob Faibussowitsch     PetscCall(PetscSFGetGraph(sfs[s], NULL, &nl, NULL, NULL));
2411157edd7aSVaclav Hapla     leafArrayOffsets[s + 1] = leafArrayOffsets[s] + nl;
2412157edd7aSVaclav Hapla   }
2413157edd7aSVaclav Hapla   nLeaves = leafArrayOffsets[nsfs];
2414157edd7aSVaclav Hapla 
24151f40158dSVaclav Hapla   /* Calculate number of roots */
24161f40158dSVaclav Hapla   switch (rootMode) {
24171f40158dSVaclav Hapla   case PETSCSF_CONCATENATE_ROOTMODE_SHARED: {
24181f40158dSVaclav Hapla     PetscCall(PetscSFGetGraph(sfs[0], &nRoots, NULL, NULL, NULL));
24191f40158dSVaclav Hapla     if (PetscDefined(USE_DEBUG)) {
24201f40158dSVaclav Hapla       for (s = 1; s < nsfs; s++) {
24211f40158dSVaclav Hapla         PetscInt nr;
24221f40158dSVaclav Hapla 
24231f40158dSVaclav Hapla         PetscCall(PetscSFGetGraph(sfs[s], &nr, NULL, NULL, NULL));
24241f40158dSVaclav Hapla         PetscCheck(nr == nRoots, comm, PETSC_ERR_ARG_SIZ, "rootMode = %s but sfs[%" PetscInt_FMT "] has a different number of roots (%" PetscInt_FMT ") than sfs[0] (%" PetscInt_FMT ")", PetscSFConcatenateRootModes[rootMode], s, nr, nRoots);
24251f40158dSVaclav Hapla       }
24261f40158dSVaclav Hapla     }
24271f40158dSVaclav Hapla   } break;
24281f40158dSVaclav Hapla   case PETSCSF_CONCATENATE_ROOTMODE_GLOBAL: {
24291f40158dSVaclav Hapla     /* Calculate also global layout in this case */
24301f40158dSVaclav Hapla     PetscInt    *nls;
24311f40158dSVaclav Hapla     PetscLayout *lts;
24321f40158dSVaclav Hapla     PetscInt   **inds;
24331f40158dSVaclav Hapla     PetscInt     j;
24341f40158dSVaclav Hapla     PetscInt     rootOffset = 0;
24351f40158dSVaclav Hapla 
24361f40158dSVaclav Hapla     PetscCall(PetscCalloc3(nsfs, &lts, nsfs, &nls, nsfs, &inds));
24371f40158dSVaclav Hapla     PetscCall(PetscLayoutCreate(comm, &glayout));
24381f40158dSVaclav Hapla     glayout->bs = 1;
24391f40158dSVaclav Hapla     glayout->n  = 0;
24401f40158dSVaclav Hapla     glayout->N  = 0;
24411f40158dSVaclav Hapla     for (s = 0; s < nsfs; s++) {
24421f40158dSVaclav Hapla       PetscCall(PetscSFGetGraphLayout(sfs[s], &lts[s], &nls[s], NULL, &inds[s]));
24431f40158dSVaclav Hapla       glayout->n += lts[s]->n;
24441f40158dSVaclav Hapla       glayout->N += lts[s]->N;
24451f40158dSVaclav Hapla     }
24461f40158dSVaclav Hapla     PetscCall(PetscLayoutSetUp(glayout));
24471f40158dSVaclav Hapla     PetscCall(PetscMalloc1(nLeaves, &gremote));
24481f40158dSVaclav Hapla     for (s = 0, j = 0; s < nsfs; s++) {
24491f40158dSVaclav Hapla       for (i = 0; i < nls[s]; i++, j++) gremote[j] = inds[s][i] + rootOffset;
24501f40158dSVaclav Hapla       rootOffset += lts[s]->N;
24511f40158dSVaclav Hapla       PetscCall(PetscLayoutDestroy(&lts[s]));
24521f40158dSVaclav Hapla       PetscCall(PetscFree(inds[s]));
24531f40158dSVaclav Hapla     }
24541f40158dSVaclav Hapla     PetscCall(PetscFree3(lts, nls, inds));
24551f40158dSVaclav Hapla     nRoots = glayout->N;
24561f40158dSVaclav Hapla   } break;
24571f40158dSVaclav Hapla   case PETSCSF_CONCATENATE_ROOTMODE_LOCAL:
24581f40158dSVaclav Hapla     /* nRoots calculated later in this case */
24591f40158dSVaclav Hapla     break;
24601f40158dSVaclav Hapla   default:
24611f40158dSVaclav Hapla     SETERRQ(comm, PETSC_ERR_ARG_WRONG, "Invalid PetscSFConcatenateRootMode %d", rootMode);
24621f40158dSVaclav Hapla   }
24631f40158dSVaclav Hapla 
2464157edd7aSVaclav Hapla   if (!leafOffsets) {
2465157edd7aSVaclav Hapla     all_ilocal_null = PETSC_TRUE;
2466157edd7aSVaclav Hapla     for (s = 0; s < nsfs; s++) {
2467157edd7aSVaclav Hapla       const PetscInt *ilocal;
2468157edd7aSVaclav Hapla 
24699566063dSJacob Faibussowitsch       PetscCall(PetscSFGetGraph(sfs[s], NULL, NULL, &ilocal, NULL));
2470157edd7aSVaclav Hapla       if (ilocal) {
2471157edd7aSVaclav Hapla         all_ilocal_null = PETSC_FALSE;
2472157edd7aSVaclav Hapla         break;
2473157edd7aSVaclav Hapla       }
2474157edd7aSVaclav Hapla     }
2475157edd7aSVaclav Hapla     PetscCheck(all_ilocal_null, PETSC_COMM_SELF, PETSC_ERR_ARG_NULL, "leafOffsets can be passed as NULL only if all SFs have ilocal = NULL");
2476157edd7aSVaclav Hapla   }
2477157edd7aSVaclav Hapla 
2478157edd7aSVaclav Hapla   /* Renumber and concatenate local leaves */
2479157edd7aSVaclav Hapla   ilocal_new = NULL;
2480157edd7aSVaclav Hapla   if (!all_ilocal_null) {
24819566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nLeaves, &ilocal_new));
2482157edd7aSVaclav Hapla     for (i = 0; i < nLeaves; i++) ilocal_new[i] = -1;
2483157edd7aSVaclav Hapla     for (s = 0; s < nsfs; s++) {
2484157edd7aSVaclav Hapla       const PetscInt *ilocal;
2485157edd7aSVaclav Hapla       PetscInt       *ilocal_l = &ilocal_new[leafArrayOffsets[s]];
2486157edd7aSVaclav Hapla       PetscInt        i, nleaves_l;
2487157edd7aSVaclav Hapla 
24889566063dSJacob Faibussowitsch       PetscCall(PetscSFGetGraph(sfs[s], NULL, &nleaves_l, &ilocal, NULL));
2489157edd7aSVaclav Hapla       for (i = 0; i < nleaves_l; i++) ilocal_l[i] = (ilocal ? ilocal[i] : i) + leafOffsets[s];
2490157edd7aSVaclav Hapla     }
2491157edd7aSVaclav Hapla   }
2492157edd7aSVaclav Hapla 
2493157edd7aSVaclav Hapla   /* Renumber and concatenate remote roots */
24941f40158dSVaclav Hapla   if (rootMode == PETSCSF_CONCATENATE_ROOTMODE_LOCAL || rootMode == PETSCSF_CONCATENATE_ROOTMODE_SHARED) {
24951f40158dSVaclav Hapla     PetscInt rootOffset = 0;
24961f40158dSVaclav Hapla 
24979566063dSJacob Faibussowitsch     PetscCall(PetscMalloc1(nLeaves, &iremote_new));
2498157edd7aSVaclav Hapla     for (i = 0; i < nLeaves; i++) {
2499157edd7aSVaclav Hapla       iremote_new[i].rank  = -1;
2500157edd7aSVaclav Hapla       iremote_new[i].index = -1;
2501157edd7aSVaclav Hapla     }
2502157edd7aSVaclav Hapla     for (s = 0; s < nsfs; s++) {
2503157edd7aSVaclav Hapla       PetscInt           i, nl, nr;
2504157edd7aSVaclav Hapla       PetscSF            tmp_sf;
2505157edd7aSVaclav Hapla       const PetscSFNode *iremote;
2506157edd7aSVaclav Hapla       PetscSFNode       *tmp_rootdata;
2507157edd7aSVaclav Hapla       PetscSFNode       *tmp_leafdata = &iremote_new[leafArrayOffsets[s]];
2508157edd7aSVaclav Hapla 
25099566063dSJacob Faibussowitsch       PetscCall(PetscSFGetGraph(sfs[s], &nr, &nl, NULL, &iremote));
25109566063dSJacob Faibussowitsch       PetscCall(PetscSFCreate(comm, &tmp_sf));
2511157edd7aSVaclav Hapla       /* create helper SF with contiguous leaves */
25129566063dSJacob Faibussowitsch       PetscCall(PetscSFSetGraph(tmp_sf, nr, nl, NULL, PETSC_USE_POINTER, (PetscSFNode *)iremote, PETSC_COPY_VALUES));
25139566063dSJacob Faibussowitsch       PetscCall(PetscSFSetUp(tmp_sf));
25149566063dSJacob Faibussowitsch       PetscCall(PetscMalloc1(nr, &tmp_rootdata));
25151f40158dSVaclav Hapla       if (rootMode == PETSCSF_CONCATENATE_ROOTMODE_LOCAL) {
2516157edd7aSVaclav Hapla         for (i = 0; i < nr; i++) {
25171f40158dSVaclav Hapla           tmp_rootdata[i].index = i + rootOffset;
2518157edd7aSVaclav Hapla           tmp_rootdata[i].rank  = (PetscInt)rank;
2519157edd7aSVaclav Hapla         }
25201f40158dSVaclav Hapla         rootOffset += nr;
25211f40158dSVaclav Hapla       } else {
25221f40158dSVaclav Hapla         for (i = 0; i < nr; i++) {
25231f40158dSVaclav Hapla           tmp_rootdata[i].index = i;
25241f40158dSVaclav Hapla           tmp_rootdata[i].rank  = (PetscInt)rank;
25251f40158dSVaclav Hapla         }
25261f40158dSVaclav Hapla       }
25279566063dSJacob Faibussowitsch       PetscCall(PetscSFBcastBegin(tmp_sf, MPIU_2INT, tmp_rootdata, tmp_leafdata, MPI_REPLACE));
25289566063dSJacob Faibussowitsch       PetscCall(PetscSFBcastEnd(tmp_sf, MPIU_2INT, tmp_rootdata, tmp_leafdata, MPI_REPLACE));
25299566063dSJacob Faibussowitsch       PetscCall(PetscSFDestroy(&tmp_sf));
25309566063dSJacob Faibussowitsch       PetscCall(PetscFree(tmp_rootdata));
2531157edd7aSVaclav Hapla     }
2532aa624791SPierre Jolivet     if (rootMode == PETSCSF_CONCATENATE_ROOTMODE_LOCAL) nRoots = rootOffset; // else nRoots already calculated above
2533157edd7aSVaclav Hapla 
2534157edd7aSVaclav Hapla     /* Build the new SF */
25359566063dSJacob Faibussowitsch     PetscCall(PetscSFCreate(comm, newsf));
25369566063dSJacob Faibussowitsch     PetscCall(PetscSFSetGraph(*newsf, nRoots, nLeaves, ilocal_new, PETSC_OWN_POINTER, iremote_new, PETSC_OWN_POINTER));
25371f40158dSVaclav Hapla   } else {
25381f40158dSVaclav Hapla     /* Build the new SF */
25391f40158dSVaclav Hapla     PetscCall(PetscSFCreate(comm, newsf));
25401f40158dSVaclav Hapla     PetscCall(PetscSFSetGraphLayout(*newsf, glayout, nLeaves, ilocal_new, PETSC_OWN_POINTER, gremote));
25411f40158dSVaclav Hapla   }
25429566063dSJacob Faibussowitsch   PetscCall(PetscSFSetUp(*newsf));
25431f40158dSVaclav Hapla   PetscCall(PetscSFViewFromOptions(*newsf, NULL, "-sf_concat_view"));
25441f40158dSVaclav Hapla   PetscCall(PetscLayoutDestroy(&glayout));
25451f40158dSVaclav Hapla   PetscCall(PetscFree(gremote));
25469566063dSJacob Faibussowitsch   PetscCall(PetscFree(leafArrayOffsets));
25473ba16761SJacob Faibussowitsch   PetscFunctionReturn(PETSC_SUCCESS);
2548157edd7aSVaclav Hapla }
2549