xref: /petsc/src/vec/is/sf/interface/sf.c (revision 2ad1e87fc0ae21e4257c7ad93a19bb2199d51d82)
1af0996ceSBarry Smith #include <petsc/private/sfimpl.h> /*I "petscsf.h" I*/
295fce210SBarry Smith #include <petscctable.h>
395fce210SBarry Smith 
495fce210SBarry Smith #if defined(PETSC_USE_DEBUG)
595fce210SBarry Smith #  define PetscSFCheckGraphSet(sf,arg) do {                          \
695fce210SBarry Smith     if (PetscUnlikely(!(sf)->graphset))                              \
795fce210SBarry Smith       SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Must call PetscSFSetGraph() on argument %D \"%s\" before %s()",(arg),#sf,PETSC_FUNCTION_NAME); \
895fce210SBarry Smith   } while (0)
995fce210SBarry Smith #else
1095fce210SBarry Smith #  define PetscSFCheckGraphSet(sf,arg) do {} while (0)
1195fce210SBarry Smith #endif
1295fce210SBarry Smith 
1395fce210SBarry Smith const char *const PetscSFDuplicateOptions[] = {"CONFONLY","RANKS","GRAPH","PetscSFDuplicateOption","PETSCSF_DUPLICATE_",0};
1495fce210SBarry Smith 
158af6ec1cSBarry Smith /*@
1695fce210SBarry Smith    PetscSFCreate - create a star forest communication context
1795fce210SBarry Smith 
1895fce210SBarry Smith    Not Collective
1995fce210SBarry Smith 
2095fce210SBarry Smith    Input Arguments:
2195fce210SBarry Smith .  comm - communicator on which the star forest will operate
2295fce210SBarry Smith 
2395fce210SBarry Smith    Output Arguments:
2495fce210SBarry Smith .  sf - new star forest context
2595fce210SBarry Smith 
2695fce210SBarry Smith    Level: intermediate
2795fce210SBarry Smith 
2895fce210SBarry Smith .seealso: PetscSFSetGraph(), PetscSFDestroy()
2995fce210SBarry Smith @*/
3095fce210SBarry Smith PetscErrorCode PetscSFCreate(MPI_Comm comm,PetscSF *sf)
3195fce210SBarry Smith {
3295fce210SBarry Smith   PetscErrorCode ierr;
3395fce210SBarry Smith   PetscSF        b;
3495fce210SBarry Smith 
3595fce210SBarry Smith   PetscFunctionBegin;
3695fce210SBarry Smith   PetscValidPointer(sf,2);
37607a6623SBarry Smith   ierr = PetscSFInitializePackage();CHKERRQ(ierr);
3895fce210SBarry Smith 
3973107ff1SLisandro Dalcin   ierr = PetscHeaderCreate(b,PETSCSF_CLASSID,"PetscSF","Star Forest","PetscSF",comm,PetscSFDestroy,PetscSFView);CHKERRQ(ierr);
4095fce210SBarry Smith 
4195fce210SBarry Smith   b->nroots    = -1;
4295fce210SBarry Smith   b->nleaves   = -1;
4329046d53SLisandro Dalcin   b->minleaf   = PETSC_MAX_INT;
4429046d53SLisandro Dalcin   b->maxleaf   = PETSC_MIN_INT;
4595fce210SBarry Smith   b->nranks    = -1;
4695fce210SBarry Smith   b->rankorder = PETSC_TRUE;
4795fce210SBarry Smith   b->ingroup   = MPI_GROUP_NULL;
4895fce210SBarry Smith   b->outgroup  = MPI_GROUP_NULL;
4995fce210SBarry Smith   b->graphset  = PETSC_FALSE;
5095fce210SBarry Smith 
5195fce210SBarry Smith   *sf = b;
5295fce210SBarry Smith   PetscFunctionReturn(0);
5395fce210SBarry Smith }
5495fce210SBarry Smith 
5529046d53SLisandro Dalcin /*@
5695fce210SBarry Smith    PetscSFReset - Reset a star forest so that different sizes or neighbors can be used
5795fce210SBarry Smith 
5895fce210SBarry Smith    Collective
5995fce210SBarry Smith 
6095fce210SBarry Smith    Input Arguments:
6195fce210SBarry Smith .  sf - star forest
6295fce210SBarry Smith 
6395fce210SBarry Smith    Level: advanced
6495fce210SBarry Smith 
6595fce210SBarry Smith .seealso: PetscSFCreate(), PetscSFSetGraph(), PetscSFDestroy()
6695fce210SBarry Smith @*/
6795fce210SBarry Smith PetscErrorCode PetscSFReset(PetscSF sf)
6895fce210SBarry Smith {
6995fce210SBarry Smith   PetscErrorCode ierr;
7095fce210SBarry Smith 
7195fce210SBarry Smith   PetscFunctionBegin;
7295fce210SBarry Smith   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
7379715d56SJed Brown   if (sf->ops->Reset) {ierr = (*sf->ops->Reset)(sf);CHKERRQ(ierr);}
7429046d53SLisandro Dalcin   sf->nroots   = -1;
7529046d53SLisandro Dalcin   sf->nleaves  = -1;
7629046d53SLisandro Dalcin   sf->minleaf  = PETSC_MAX_INT;
7729046d53SLisandro Dalcin   sf->maxleaf  = PETSC_MIN_INT;
7895fce210SBarry Smith   sf->mine     = NULL;
7995fce210SBarry Smith   sf->remote   = NULL;
8029046d53SLisandro Dalcin   sf->graphset = PETSC_FALSE;
8129046d53SLisandro Dalcin   ierr = PetscFree(sf->mine_alloc);CHKERRQ(ierr);
8295fce210SBarry Smith   ierr = PetscFree(sf->remote_alloc);CHKERRQ(ierr);
8321c688dcSJed Brown   sf->nranks = -1;
8429046d53SLisandro Dalcin   ierr = PetscFree4(sf->ranks,sf->roffset,sf->rmine,sf->rremote);CHKERRQ(ierr);
8529046d53SLisandro Dalcin   sf->degreeknown = PETSC_FALSE;
8695fce210SBarry Smith   ierr = PetscFree(sf->degree);CHKERRQ(ierr);
8795fce210SBarry Smith   if (sf->ingroup  != MPI_GROUP_NULL) {ierr = MPI_Group_free(&sf->ingroup);CHKERRQ(ierr);}
8895fce210SBarry Smith   if (sf->outgroup != MPI_GROUP_NULL) {ierr = MPI_Group_free(&sf->outgroup);CHKERRQ(ierr);}
8995fce210SBarry Smith   ierr = PetscSFDestroy(&sf->multi);CHKERRQ(ierr);
9095fce210SBarry Smith   sf->setupcalled = PETSC_FALSE;
9195fce210SBarry Smith   PetscFunctionReturn(0);
9295fce210SBarry Smith }
9395fce210SBarry Smith 
9495fce210SBarry Smith /*@C
9529046d53SLisandro Dalcin    PetscSFSetType - Set the PetscSF communication implementation
9695fce210SBarry Smith 
9795fce210SBarry Smith    Collective on PetscSF
9895fce210SBarry Smith 
9995fce210SBarry Smith    Input Parameters:
10095fce210SBarry Smith +  sf - the PetscSF context
10195fce210SBarry Smith -  type - a known method
10295fce210SBarry Smith 
10395fce210SBarry Smith    Options Database Key:
10495fce210SBarry Smith .  -sf_type <type> - Sets the method; use -help for a list
10595fce210SBarry Smith    of available methods (for instance, window, pt2pt, neighbor)
10695fce210SBarry Smith 
10795fce210SBarry Smith    Notes:
10895fce210SBarry Smith    See "include/petscsf.h" for available methods (for instance)
10995fce210SBarry Smith +    PETSCSFWINDOW - MPI-2/3 one-sided
11095fce210SBarry Smith -    PETSCSFBASIC - basic implementation using MPI-1 two-sided
11195fce210SBarry Smith 
11295fce210SBarry Smith   Level: intermediate
11395fce210SBarry Smith 
11495fce210SBarry Smith .keywords: PetscSF, set, type
11595fce210SBarry Smith 
11695fce210SBarry Smith .seealso: PetscSFType, PetscSFCreate()
11795fce210SBarry Smith @*/
11895fce210SBarry Smith PetscErrorCode PetscSFSetType(PetscSF sf,PetscSFType type)
11995fce210SBarry Smith {
12095fce210SBarry Smith   PetscErrorCode ierr,(*r)(PetscSF);
12195fce210SBarry Smith   PetscBool      match;
12295fce210SBarry Smith 
12395fce210SBarry Smith   PetscFunctionBegin;
12495fce210SBarry Smith   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
12595fce210SBarry Smith   PetscValidCharPointer(type,2);
12695fce210SBarry Smith 
12795fce210SBarry Smith   ierr = PetscObjectTypeCompare((PetscObject)sf,type,&match);CHKERRQ(ierr);
12895fce210SBarry Smith   if (match) PetscFunctionReturn(0);
12995fce210SBarry Smith 
130adc40e5bSBarry Smith   ierr = PetscFunctionListFind(PetscSFList,type,&r);CHKERRQ(ierr);
13195fce210SBarry Smith   if (!r) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_UNKNOWN_TYPE,"Unable to find requested PetscSF type %s",type);
13229046d53SLisandro Dalcin   /* Destroy the previous PetscSF implementation context */
13329046d53SLisandro Dalcin   if (sf->ops->Destroy) {ierr = (*(sf)->ops->Destroy)(sf);CHKERRQ(ierr);}
13495fce210SBarry Smith   ierr = PetscMemzero(sf->ops,sizeof(*sf->ops));CHKERRQ(ierr);
13595fce210SBarry Smith   ierr = PetscObjectChangeTypeName((PetscObject)sf,type);CHKERRQ(ierr);
13695fce210SBarry Smith   ierr = (*r)(sf);CHKERRQ(ierr);
13795fce210SBarry Smith   PetscFunctionReturn(0);
13895fce210SBarry Smith }
13995fce210SBarry Smith 
14029046d53SLisandro Dalcin /*@C
14129046d53SLisandro Dalcin   PetscSFGetType - Get the PetscSF communication implementation
14229046d53SLisandro Dalcin 
14329046d53SLisandro Dalcin   Not Collective
14429046d53SLisandro Dalcin 
14529046d53SLisandro Dalcin   Input Parameter:
14629046d53SLisandro Dalcin . sf  - the PetscSF context
14729046d53SLisandro Dalcin 
14829046d53SLisandro Dalcin   Output Parameter:
14929046d53SLisandro Dalcin . type - the PetscSF type name
15029046d53SLisandro Dalcin 
15129046d53SLisandro Dalcin   Level: intermediate
15229046d53SLisandro Dalcin 
15329046d53SLisandro Dalcin .keywords: PetscSF, get, type
15429046d53SLisandro Dalcin .seealso: PetscSFSetType(), PetscSFCreate()
15529046d53SLisandro Dalcin @*/
15629046d53SLisandro Dalcin PetscErrorCode PetscSFGetType(PetscSF sf, PetscSFType *type)
15729046d53SLisandro Dalcin {
15829046d53SLisandro Dalcin   PetscFunctionBegin;
15929046d53SLisandro Dalcin   PetscValidHeaderSpecific(sf, PETSCSF_CLASSID,1);
16029046d53SLisandro Dalcin   PetscValidPointer(type,2);
16129046d53SLisandro Dalcin   *type = ((PetscObject)sf)->type_name;
16229046d53SLisandro Dalcin   PetscFunctionReturn(0);
16329046d53SLisandro Dalcin }
16429046d53SLisandro Dalcin 
165d36d33e4SMatthew G. Knepley /*@
16695fce210SBarry Smith    PetscSFDestroy - destroy star forest
16795fce210SBarry Smith 
16895fce210SBarry Smith    Collective
16995fce210SBarry Smith 
17095fce210SBarry Smith    Input Arguments:
17195fce210SBarry Smith .  sf - address of star forest
17295fce210SBarry Smith 
17395fce210SBarry Smith    Level: intermediate
17495fce210SBarry Smith 
17595fce210SBarry Smith .seealso: PetscSFCreate(), PetscSFReset()
17695fce210SBarry Smith @*/
17795fce210SBarry Smith PetscErrorCode PetscSFDestroy(PetscSF *sf)
17895fce210SBarry Smith {
17995fce210SBarry Smith   PetscErrorCode ierr;
18095fce210SBarry Smith 
18195fce210SBarry Smith   PetscFunctionBegin;
18295fce210SBarry Smith   if (!*sf) PetscFunctionReturn(0);
18395fce210SBarry Smith   PetscValidHeaderSpecific((*sf),PETSCSF_CLASSID,1);
18429046d53SLisandro Dalcin   if (--((PetscObject)(*sf))->refct > 0) {*sf = NULL; PetscFunctionReturn(0);}
18595fce210SBarry Smith   ierr = PetscSFReset(*sf);CHKERRQ(ierr);
18695fce210SBarry Smith   if ((*sf)->ops->Destroy) {ierr = (*(*sf)->ops->Destroy)(*sf);CHKERRQ(ierr);}
18795fce210SBarry Smith   ierr = PetscHeaderDestroy(sf);CHKERRQ(ierr);
18895fce210SBarry Smith   PetscFunctionReturn(0);
18995fce210SBarry Smith }
19095fce210SBarry Smith 
19195fce210SBarry Smith /*@
19295fce210SBarry Smith    PetscSFSetUp - set up communication structures
19395fce210SBarry Smith 
19495fce210SBarry Smith    Collective
19595fce210SBarry Smith 
19695fce210SBarry Smith    Input Arguments:
19795fce210SBarry Smith .  sf - star forest communication object
19895fce210SBarry Smith 
19995fce210SBarry Smith    Level: beginner
20095fce210SBarry Smith 
20195fce210SBarry Smith .seealso: PetscSFSetFromOptions(), PetscSFSetType()
20295fce210SBarry Smith @*/
20395fce210SBarry Smith PetscErrorCode PetscSFSetUp(PetscSF sf)
20495fce210SBarry Smith {
20595fce210SBarry Smith   PetscErrorCode ierr;
20695fce210SBarry Smith 
20795fce210SBarry Smith   PetscFunctionBegin;
20829046d53SLisandro Dalcin   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
20929046d53SLisandro Dalcin   PetscSFCheckGraphSet(sf,1);
21095fce210SBarry Smith   if (sf->setupcalled) PetscFunctionReturn(0);
21195fce210SBarry Smith   if (!((PetscObject)sf)->type_name) {ierr = PetscSFSetType(sf,PETSCSFBASIC);CHKERRQ(ierr);}
21229046d53SLisandro Dalcin   ierr = PetscLogEventBegin(PETSCSF_SetUp,sf,0,0,0);CHKERRQ(ierr);
21395fce210SBarry Smith   if (sf->ops->SetUp) {ierr = (*sf->ops->SetUp)(sf);CHKERRQ(ierr);}
21429046d53SLisandro Dalcin   ierr = PetscLogEventEnd(PETSCSF_SetUp,sf,0,0,0);CHKERRQ(ierr);
21595fce210SBarry Smith   sf->setupcalled = PETSC_TRUE;
21695fce210SBarry Smith   PetscFunctionReturn(0);
21795fce210SBarry Smith }
21895fce210SBarry Smith 
2198af6ec1cSBarry Smith /*@
22095fce210SBarry Smith    PetscSFSetFromOptions - set PetscSF options using the options database
22195fce210SBarry Smith 
22295fce210SBarry Smith    Logically Collective
22395fce210SBarry Smith 
22495fce210SBarry Smith    Input Arguments:
22595fce210SBarry Smith .  sf - star forest
22695fce210SBarry Smith 
22795fce210SBarry Smith    Options Database Keys:
22860263706SJed Brown +  -sf_type - implementation type, see PetscSFSetType()
22960263706SJed Brown -  -sf_rank_order - sort composite points for gathers and scatters in rank order, gathers are non-deterministic otherwise
23095fce210SBarry Smith 
23195fce210SBarry Smith    Level: intermediate
23295fce210SBarry Smith 
23395fce210SBarry Smith .keywords: KSP, set, from, options, database
23495fce210SBarry Smith 
23595fce210SBarry Smith .seealso: PetscSFWindowSetSyncType()
23695fce210SBarry Smith @*/
23795fce210SBarry Smith PetscErrorCode PetscSFSetFromOptions(PetscSF sf)
23895fce210SBarry Smith {
23995fce210SBarry Smith   PetscSFType    deft;
24095fce210SBarry Smith   char           type[256];
24195fce210SBarry Smith   PetscErrorCode ierr;
24295fce210SBarry Smith   PetscBool      flg;
24395fce210SBarry Smith 
24495fce210SBarry Smith   PetscFunctionBegin;
24595fce210SBarry Smith   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
24695fce210SBarry Smith   ierr = PetscObjectOptionsBegin((PetscObject)sf);CHKERRQ(ierr);
24795fce210SBarry Smith   deft = ((PetscObject)sf)->type_name ? ((PetscObject)sf)->type_name : PETSCSFBASIC;
24829046d53SLisandro Dalcin   ierr = PetscOptionsFList("-sf_type","PetscSF implementation type","PetscSFSetType",PetscSFList,deft,type,sizeof(type),&flg);CHKERRQ(ierr);
24995fce210SBarry Smith   ierr = PetscSFSetType(sf,flg ? type : deft);CHKERRQ(ierr);
25095fce210SBarry Smith   ierr = PetscOptionsBool("-sf_rank_order","sort composite points for gathers and scatters in rank order, gathers are non-deterministic otherwise","PetscSFSetRankOrder",sf->rankorder,&sf->rankorder,NULL);CHKERRQ(ierr);
251e55864a3SBarry Smith   if (sf->ops->SetFromOptions) {ierr = (*sf->ops->SetFromOptions)(PetscOptionsObject,sf);CHKERRQ(ierr);}
25295fce210SBarry Smith   ierr = PetscOptionsEnd();CHKERRQ(ierr);
25395fce210SBarry Smith   PetscFunctionReturn(0);
25495fce210SBarry Smith }
25595fce210SBarry Smith 
25629046d53SLisandro Dalcin /*@
25795fce210SBarry Smith    PetscSFSetRankOrder - sort multi-points for gathers and scatters by rank order
25895fce210SBarry Smith 
25995fce210SBarry Smith    Logically Collective
26095fce210SBarry Smith 
26195fce210SBarry Smith    Input Arguments:
26295fce210SBarry Smith +  sf - star forest
26395fce210SBarry Smith -  flg - PETSC_TRUE to sort, PETSC_FALSE to skip sorting (lower setup cost, but non-deterministic)
26495fce210SBarry Smith 
26595fce210SBarry Smith    Level: advanced
26695fce210SBarry Smith 
26795fce210SBarry Smith .seealso: PetscSFGatherBegin(), PetscSFScatterBegin()
26895fce210SBarry Smith @*/
26995fce210SBarry Smith PetscErrorCode PetscSFSetRankOrder(PetscSF sf,PetscBool flg)
27095fce210SBarry Smith {
27195fce210SBarry Smith 
27295fce210SBarry Smith   PetscFunctionBegin;
27395fce210SBarry Smith   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
27495fce210SBarry Smith   PetscValidLogicalCollectiveBool(sf,flg,2);
27595fce210SBarry Smith   if (sf->multi) SETERRQ(PetscObjectComm((PetscObject)sf),PETSC_ERR_ARG_WRONGSTATE,"Rank ordering must be set before first call to PetscSFGatherBegin() or PetscSFScatterBegin()");
27695fce210SBarry Smith   sf->rankorder = flg;
27795fce210SBarry Smith   PetscFunctionReturn(0);
27895fce210SBarry Smith }
27995fce210SBarry Smith 
2808af6ec1cSBarry Smith /*@
28195fce210SBarry Smith    PetscSFSetGraph - Set a parallel star forest
28295fce210SBarry Smith 
28395fce210SBarry Smith    Collective
28495fce210SBarry Smith 
28595fce210SBarry Smith    Input Arguments:
28695fce210SBarry Smith +  sf - star forest
28795fce210SBarry Smith .  nroots - number of root vertices on the current process (these are possible targets for other process to attach leaves)
28895fce210SBarry Smith .  nleaves - number of leaf vertices on the current process, each of these references a root on any process
28995fce210SBarry Smith .  ilocal - locations of leaves in leafdata buffers, pass NULL for contiguous storage
29095fce210SBarry Smith .  localmode - copy mode for ilocal
29195fce210SBarry Smith .  iremote - remote locations of root vertices for each leaf on the current process
29295fce210SBarry Smith -  remotemode - copy mode for iremote
29395fce210SBarry Smith 
29495fce210SBarry Smith    Level: intermediate
29595fce210SBarry Smith 
29638ab3f8aSBarry Smith    Notes: In Fortran you must use PETSC_COPY_VALUES for localmode and remotemode
29738ab3f8aSBarry Smith 
298*2ad1e87fSLisandro Dalcin    Developers Note: Local indices which are the identity permutation in the range [0,nleaves) are discarded as they
299*2ad1e87fSLisandro Dalcin    encode contiguous storage. In such case, if localmode is PETSC_OWN_POINTER, the memory is deallocated as it is not
300*2ad1e87fSLisandro Dalcin    needed
301*2ad1e87fSLisandro Dalcin 
30295fce210SBarry Smith .seealso: PetscSFCreate(), PetscSFView(), PetscSFGetGraph()
30395fce210SBarry Smith @*/
30495fce210SBarry Smith PetscErrorCode PetscSFSetGraph(PetscSF sf,PetscInt nroots,PetscInt nleaves,const PetscInt *ilocal,PetscCopyMode localmode,const PetscSFNode *iremote,PetscCopyMode remotemode)
30595fce210SBarry Smith {
30695fce210SBarry Smith   PetscErrorCode ierr;
30795fce210SBarry Smith 
30895fce210SBarry Smith   PetscFunctionBegin;
30995fce210SBarry Smith   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
31029046d53SLisandro Dalcin   if (nleaves > 0 && ilocal) PetscValidIntPointer(ilocal,4);
31129046d53SLisandro Dalcin   if (nleaves > 0) PetscValidPointer(iremote,6);
31229046d53SLisandro Dalcin   if (nroots  < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"nroots %D, cannot be negative",nroots);
31395fce210SBarry Smith   if (nleaves < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"nleaves %D, cannot be negative",nleaves);
31429046d53SLisandro Dalcin 
31595fce210SBarry Smith   ierr = PetscSFReset(sf);CHKERRQ(ierr);
31629046d53SLisandro Dalcin   ierr = PetscLogEventBegin(PETSCSF_SetGraph,sf,0,0,0);CHKERRQ(ierr);
31729046d53SLisandro Dalcin 
31895fce210SBarry Smith   sf->nroots  = nroots;
31995fce210SBarry Smith   sf->nleaves = nleaves;
32029046d53SLisandro Dalcin 
32129046d53SLisandro Dalcin   if (nleaves && ilocal) {
32221c688dcSJed Brown     PetscInt i;
32329046d53SLisandro Dalcin     PetscInt minleaf = PETSC_MAX_INT;
32429046d53SLisandro Dalcin     PetscInt maxleaf = PETSC_MIN_INT;
325*2ad1e87fSLisandro Dalcin     int      contiguous = 1;
32629046d53SLisandro Dalcin     for (i=0; i<nleaves; i++) {
32729046d53SLisandro Dalcin       minleaf = PetscMin(minleaf,ilocal[i]);
32829046d53SLisandro Dalcin       maxleaf = PetscMax(maxleaf,ilocal[i]);
329*2ad1e87fSLisandro Dalcin       contiguous &= (ilocal[i] == i);
33029046d53SLisandro Dalcin     }
33129046d53SLisandro Dalcin     sf->minleaf = minleaf;
33229046d53SLisandro Dalcin     sf->maxleaf = maxleaf;
333*2ad1e87fSLisandro Dalcin     if (contiguous) {
334*2ad1e87fSLisandro Dalcin       if (localmode == PETSC_OWN_POINTER) {
335*2ad1e87fSLisandro Dalcin         ierr = PetscFree(ilocal);CHKERRQ(ierr);
336*2ad1e87fSLisandro Dalcin       }
337*2ad1e87fSLisandro Dalcin       ilocal = NULL;
338*2ad1e87fSLisandro Dalcin     }
33929046d53SLisandro Dalcin   } else {
34029046d53SLisandro Dalcin     sf->minleaf = 0;
34129046d53SLisandro Dalcin     sf->maxleaf = nleaves - 1;
34229046d53SLisandro Dalcin   }
34329046d53SLisandro Dalcin 
34429046d53SLisandro Dalcin   if (ilocal) {
34595fce210SBarry Smith     switch (localmode) {
34695fce210SBarry Smith     case PETSC_COPY_VALUES:
347785e854fSJed Brown       ierr = PetscMalloc1(nleaves,&sf->mine_alloc);CHKERRQ(ierr);
34829046d53SLisandro Dalcin       ierr = PetscMemcpy(sf->mine_alloc,ilocal,nleaves*sizeof(*ilocal));CHKERRQ(ierr);
34995fce210SBarry Smith       sf->mine = sf->mine_alloc;
35095fce210SBarry Smith       break;
35195fce210SBarry Smith     case PETSC_OWN_POINTER:
35295fce210SBarry Smith       sf->mine_alloc = (PetscInt*)ilocal;
35395fce210SBarry Smith       sf->mine       = sf->mine_alloc;
35495fce210SBarry Smith       break;
35595fce210SBarry Smith     case PETSC_USE_POINTER:
35629046d53SLisandro Dalcin       sf->mine_alloc = NULL;
35795fce210SBarry Smith       sf->mine       = (PetscInt*)ilocal;
35895fce210SBarry Smith       break;
35995fce210SBarry Smith     default: SETERRQ(PetscObjectComm((PetscObject)sf),PETSC_ERR_ARG_OUTOFRANGE,"Unknown localmode");
36095fce210SBarry Smith     }
36195fce210SBarry Smith   }
36229046d53SLisandro Dalcin 
36395fce210SBarry Smith   switch (remotemode) {
36495fce210SBarry Smith   case PETSC_COPY_VALUES:
365785e854fSJed Brown     ierr = PetscMalloc1(nleaves,&sf->remote_alloc);CHKERRQ(ierr);
36629046d53SLisandro Dalcin     ierr = PetscMemcpy(sf->remote_alloc,iremote,nleaves*sizeof(*iremote));CHKERRQ(ierr);
36795fce210SBarry Smith     sf->remote = sf->remote_alloc;
36895fce210SBarry Smith     break;
36995fce210SBarry Smith   case PETSC_OWN_POINTER:
37095fce210SBarry Smith     sf->remote_alloc = (PetscSFNode*)iremote;
37195fce210SBarry Smith     sf->remote       = sf->remote_alloc;
37295fce210SBarry Smith     break;
37395fce210SBarry Smith   case PETSC_USE_POINTER:
37429046d53SLisandro Dalcin     sf->remote_alloc = NULL;
37595fce210SBarry Smith     sf->remote       = (PetscSFNode*)iremote;
37695fce210SBarry Smith     break;
37795fce210SBarry Smith   default: SETERRQ(PetscObjectComm((PetscObject)sf),PETSC_ERR_ARG_OUTOFRANGE,"Unknown remotemode");
37895fce210SBarry Smith   }
37995fce210SBarry Smith 
380563ffbabSMatthew G. Knepley   ierr = PetscLogEventEnd(PETSCSF_SetGraph,sf,0,0,0);CHKERRQ(ierr);
38129046d53SLisandro Dalcin   sf->graphset = PETSC_TRUE;
38295fce210SBarry Smith   PetscFunctionReturn(0);
38395fce210SBarry Smith }
38495fce210SBarry Smith 
38529046d53SLisandro Dalcin /*@
38695fce210SBarry Smith    PetscSFCreateInverseSF - given a PetscSF in which all vertices have degree 1, creates the inverse map
38795fce210SBarry Smith 
38895fce210SBarry Smith    Collective
38995fce210SBarry Smith 
39095fce210SBarry Smith    Input Arguments:
39195fce210SBarry Smith .  sf - star forest to invert
39295fce210SBarry Smith 
39395fce210SBarry Smith    Output Arguments:
39495fce210SBarry Smith .  isf - inverse of sf
39595fce210SBarry Smith 
39695fce210SBarry Smith    Level: advanced
39795fce210SBarry Smith 
39895fce210SBarry Smith    Notes:
39995fce210SBarry Smith    All roots must have degree 1.
40095fce210SBarry Smith 
40195fce210SBarry Smith    The local space may be a permutation, but cannot be sparse.
40295fce210SBarry Smith 
40395fce210SBarry Smith .seealso: PetscSFSetGraph()
40495fce210SBarry Smith @*/
40595fce210SBarry Smith PetscErrorCode PetscSFCreateInverseSF(PetscSF sf,PetscSF *isf)
40695fce210SBarry Smith {
40795fce210SBarry Smith   PetscErrorCode ierr;
40895fce210SBarry Smith   PetscMPIInt    rank;
40995fce210SBarry Smith   PetscInt       i,nroots,nleaves,maxlocal,count,*newilocal;
41095fce210SBarry Smith   const PetscInt *ilocal;
41195fce210SBarry Smith   PetscSFNode    *roots,*leaves;
41295fce210SBarry Smith 
41395fce210SBarry Smith   PetscFunctionBegin;
41429046d53SLisandro Dalcin   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
41529046d53SLisandro Dalcin   PetscSFCheckGraphSet(sf,1);
41629046d53SLisandro Dalcin   PetscValidPointer(isf,2);
41729046d53SLisandro Dalcin 
41895fce210SBarry Smith   ierr = PetscSFGetGraph(sf,&nroots,&nleaves,&ilocal,NULL);CHKERRQ(ierr);
41929046d53SLisandro Dalcin   maxlocal = sf->maxleaf+1; /* TODO: We should use PetscSFGetLeafRange() */
42029046d53SLisandro Dalcin 
42129046d53SLisandro Dalcin   ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)sf),&rank);CHKERRQ(ierr);
422ae9aee6dSMatthew G. Knepley   ierr = PetscMalloc2(nroots,&roots,maxlocal,&leaves);CHKERRQ(ierr);
423ae9aee6dSMatthew G. Knepley   for (i=0; i<maxlocal; i++) {
42495fce210SBarry Smith     leaves[i].rank  = rank;
42595fce210SBarry Smith     leaves[i].index = i;
42695fce210SBarry Smith   }
42795fce210SBarry Smith   for (i=0; i <nroots; i++) {
42895fce210SBarry Smith     roots[i].rank  = -1;
42995fce210SBarry Smith     roots[i].index = -1;
43095fce210SBarry Smith   }
4318bfbc91cSJed Brown   ierr = PetscSFReduceBegin(sf,MPIU_2INT,leaves,roots,MPIU_REPLACE);CHKERRQ(ierr);
4328bfbc91cSJed Brown   ierr = PetscSFReduceEnd(sf,MPIU_2INT,leaves,roots,MPIU_REPLACE);CHKERRQ(ierr);
43395fce210SBarry Smith 
43495fce210SBarry Smith   /* Check whether our leaves are sparse */
43595fce210SBarry Smith   for (i=0,count=0; i<nroots; i++) if (roots[i].rank >= 0) count++;
43695fce210SBarry Smith   if (count == nroots) newilocal = NULL;
43795fce210SBarry Smith   else {                        /* Index for sparse leaves and compact "roots" array (which is to become our leaves). */
438785e854fSJed Brown     ierr = PetscMalloc1(count,&newilocal);CHKERRQ(ierr);
43995fce210SBarry Smith     for (i=0,count=0; i<nroots; i++) {
44095fce210SBarry Smith       if (roots[i].rank >= 0) {
44195fce210SBarry Smith         newilocal[count]   = i;
44295fce210SBarry Smith         roots[count].rank  = roots[i].rank;
44395fce210SBarry Smith         roots[count].index = roots[i].index;
44495fce210SBarry Smith         count++;
44595fce210SBarry Smith       }
44695fce210SBarry Smith     }
44795fce210SBarry Smith   }
44895fce210SBarry Smith 
44995fce210SBarry Smith   ierr = PetscSFDuplicate(sf,PETSCSF_DUPLICATE_CONFONLY,isf);CHKERRQ(ierr);
45095fce210SBarry Smith   ierr = PetscSFSetGraph(*isf,maxlocal,count,newilocal,PETSC_OWN_POINTER,roots,PETSC_COPY_VALUES);CHKERRQ(ierr);
45195fce210SBarry Smith   ierr = PetscFree2(roots,leaves);CHKERRQ(ierr);
45295fce210SBarry Smith   PetscFunctionReturn(0);
45395fce210SBarry Smith }
45495fce210SBarry Smith 
45595fce210SBarry Smith /*@
45695fce210SBarry Smith    PetscSFDuplicate - duplicate a PetscSF, optionally preserving rank connectivity and graph
45795fce210SBarry Smith 
45895fce210SBarry Smith    Collective
45995fce210SBarry Smith 
46095fce210SBarry Smith    Input Arguments:
46195fce210SBarry Smith +  sf - communication object to duplicate
46295fce210SBarry Smith -  opt - PETSCSF_DUPLICATE_CONFONLY, PETSCSF_DUPLICATE_RANKS, or PETSCSF_DUPLICATE_GRAPH (see PetscSFDuplicateOption)
46395fce210SBarry Smith 
46495fce210SBarry Smith    Output Arguments:
46595fce210SBarry Smith .  newsf - new communication object
46695fce210SBarry Smith 
46795fce210SBarry Smith    Level: beginner
46895fce210SBarry Smith 
46995fce210SBarry Smith .seealso: PetscSFCreate(), PetscSFSetType(), PetscSFSetGraph()
47095fce210SBarry Smith @*/
47195fce210SBarry Smith PetscErrorCode PetscSFDuplicate(PetscSF sf,PetscSFDuplicateOption opt,PetscSF *newsf)
47295fce210SBarry Smith {
47329046d53SLisandro Dalcin   PetscSFType    type;
47495fce210SBarry Smith   PetscErrorCode ierr;
47595fce210SBarry Smith 
47695fce210SBarry Smith   PetscFunctionBegin;
47729046d53SLisandro Dalcin   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
47829046d53SLisandro Dalcin   PetscValidLogicalCollectiveEnum(sf,opt,2);
47929046d53SLisandro Dalcin   PetscValidPointer(newsf,3);
48095fce210SBarry Smith   ierr = PetscSFCreate(PetscObjectComm((PetscObject)sf),newsf);CHKERRQ(ierr);
48129046d53SLisandro Dalcin   ierr = PetscSFGetType(sf,&type);CHKERRQ(ierr);
48229046d53SLisandro Dalcin   if (type) {ierr = PetscSFSetType(*newsf,type);CHKERRQ(ierr);}
48395fce210SBarry Smith   if (opt == PETSCSF_DUPLICATE_GRAPH) {
48495fce210SBarry Smith     PetscInt          nroots,nleaves;
48595fce210SBarry Smith     const PetscInt    *ilocal;
48695fce210SBarry Smith     const PetscSFNode *iremote;
48729046d53SLisandro Dalcin     PetscSFCheckGraphSet(sf,1);
48895fce210SBarry Smith     ierr = PetscSFGetGraph(sf,&nroots,&nleaves,&ilocal,&iremote);CHKERRQ(ierr);
48995fce210SBarry Smith     ierr = PetscSFSetGraph(*newsf,nroots,nleaves,ilocal,PETSC_COPY_VALUES,iremote,PETSC_COPY_VALUES);CHKERRQ(ierr);
49095fce210SBarry Smith   }
49129046d53SLisandro Dalcin   if (sf->ops->Duplicate) {ierr = (*sf->ops->Duplicate)(sf,opt,*newsf);CHKERRQ(ierr);}
49295fce210SBarry Smith   PetscFunctionReturn(0);
49395fce210SBarry Smith }
49495fce210SBarry Smith 
49595fce210SBarry Smith /*@C
49695fce210SBarry Smith    PetscSFGetGraph - Get the graph specifying a parallel star forest
49795fce210SBarry Smith 
49895fce210SBarry Smith    Not Collective
49995fce210SBarry Smith 
50095fce210SBarry Smith    Input Arguments:
50195fce210SBarry Smith .  sf - star forest
50295fce210SBarry Smith 
50395fce210SBarry Smith    Output Arguments:
50495fce210SBarry Smith +  nroots - number of root vertices on the current process (these are possible targets for other process to attach leaves)
50595fce210SBarry Smith .  nleaves - number of leaf vertices on the current process, each of these references a root on any process
50695fce210SBarry Smith .  ilocal - locations of leaves in leafdata buffers
50795fce210SBarry Smith -  iremote - remote locations of root vertices for each leaf on the current process
50895fce210SBarry Smith 
509373e0d91SLisandro Dalcin    Notes:
510373e0d91SLisandro Dalcin    We are not currently requiring that the graph is set, thus returning nroots=-1 if it has not been set yet
511373e0d91SLisandro Dalcin 
51295fce210SBarry Smith    Level: intermediate
51395fce210SBarry Smith 
51495fce210SBarry Smith .seealso: PetscSFCreate(), PetscSFView(), PetscSFSetGraph()
51595fce210SBarry Smith @*/
51695fce210SBarry Smith PetscErrorCode PetscSFGetGraph(PetscSF sf,PetscInt *nroots,PetscInt *nleaves,const PetscInt **ilocal,const PetscSFNode **iremote)
51795fce210SBarry Smith {
51895fce210SBarry Smith 
51995fce210SBarry Smith   PetscFunctionBegin;
52095fce210SBarry Smith   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
52195fce210SBarry Smith   if (nroots) *nroots = sf->nroots;
52295fce210SBarry Smith   if (nleaves) *nleaves = sf->nleaves;
52395fce210SBarry Smith   if (ilocal) *ilocal = sf->mine;
52495fce210SBarry Smith   if (iremote) *iremote = sf->remote;
52595fce210SBarry Smith   PetscFunctionReturn(0);
52695fce210SBarry Smith }
52795fce210SBarry Smith 
52829046d53SLisandro Dalcin /*@
52995fce210SBarry Smith    PetscSFGetLeafRange - Get the active leaf ranges
53095fce210SBarry Smith 
53195fce210SBarry Smith    Not Collective
53295fce210SBarry Smith 
53395fce210SBarry Smith    Input Arguments:
53495fce210SBarry Smith .  sf - star forest
53595fce210SBarry Smith 
53695fce210SBarry Smith    Output Arguments:
53795fce210SBarry Smith +  minleaf - minimum active leaf on this process
53895fce210SBarry Smith -  maxleaf - maximum active leaf on this process
53995fce210SBarry Smith 
54095fce210SBarry Smith    Level: developer
54195fce210SBarry Smith 
54295fce210SBarry Smith .seealso: PetscSFCreate(), PetscSFView(), PetscSFSetGraph(), PetscSFGetGraph()
54395fce210SBarry Smith @*/
54495fce210SBarry Smith PetscErrorCode PetscSFGetLeafRange(PetscSF sf,PetscInt *minleaf,PetscInt *maxleaf)
54595fce210SBarry Smith {
54695fce210SBarry Smith 
54795fce210SBarry Smith   PetscFunctionBegin;
54895fce210SBarry Smith   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
54929046d53SLisandro Dalcin   PetscSFCheckGraphSet(sf,1);
55095fce210SBarry Smith   if (minleaf) *minleaf = sf->minleaf;
55195fce210SBarry Smith   if (maxleaf) *maxleaf = sf->maxleaf;
55295fce210SBarry Smith   PetscFunctionReturn(0);
55395fce210SBarry Smith }
55495fce210SBarry Smith 
55595fce210SBarry Smith /*@C
55695fce210SBarry Smith    PetscSFView - view a star forest
55795fce210SBarry Smith 
55895fce210SBarry Smith    Collective
55995fce210SBarry Smith 
56095fce210SBarry Smith    Input Arguments:
56195fce210SBarry Smith +  sf - star forest
56295fce210SBarry Smith -  viewer - viewer to display graph, for example PETSC_VIEWER_STDOUT_WORLD
56395fce210SBarry Smith 
56495fce210SBarry Smith    Level: beginner
56595fce210SBarry Smith 
56695fce210SBarry Smith .seealso: PetscSFCreate(), PetscSFSetGraph()
56795fce210SBarry Smith @*/
56895fce210SBarry Smith PetscErrorCode PetscSFView(PetscSF sf,PetscViewer viewer)
56995fce210SBarry Smith {
57095fce210SBarry Smith   PetscErrorCode    ierr;
57195fce210SBarry Smith   PetscBool         iascii;
57295fce210SBarry Smith   PetscViewerFormat format;
57395fce210SBarry Smith 
57495fce210SBarry Smith   PetscFunctionBegin;
57595fce210SBarry Smith   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
57695fce210SBarry Smith   if (!viewer) {ierr = PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject)sf),&viewer);CHKERRQ(ierr);}
57795fce210SBarry Smith   PetscValidHeaderSpecific(viewer,PETSC_VIEWER_CLASSID,2);
57895fce210SBarry Smith   PetscCheckSameComm(sf,1,viewer,2);
57980153354SVaclav Hapla   if (sf->graphset) {ierr = PetscSFSetUp(sf);CHKERRQ(ierr);}
58095fce210SBarry Smith   ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr);
58195fce210SBarry Smith   if (iascii) {
58295fce210SBarry Smith     PetscMPIInt rank;
58381bfa7aaSJed Brown     PetscInt    ii,i,j;
58495fce210SBarry Smith 
585dae58748SBarry Smith     ierr = PetscObjectPrintClassNamePrefixType((PetscObject)sf,viewer);CHKERRQ(ierr);
58695fce210SBarry Smith     ierr = PetscViewerASCIIPushTab(viewer);CHKERRQ(ierr);
58795fce210SBarry Smith     if (sf->ops->View) {ierr = (*sf->ops->View)(sf,viewer);CHKERRQ(ierr);}
58880153354SVaclav Hapla     if (!sf->graphset) {
58980153354SVaclav Hapla       ierr = PetscViewerASCIIPrintf(viewer,"PetscSFSetGraph() has not been called yet\n");CHKERRQ(ierr);
59080153354SVaclav Hapla       ierr = PetscViewerASCIIPopTab(viewer);CHKERRQ(ierr);
59180153354SVaclav Hapla       PetscFunctionReturn(0);
59280153354SVaclav Hapla     }
59395fce210SBarry Smith     ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)sf),&rank);CHKERRQ(ierr);
5941575c14dSBarry Smith     ierr = PetscViewerASCIIPushSynchronized(viewer);CHKERRQ(ierr);
59595fce210SBarry Smith     ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Number of roots=%D, leaves=%D, remote ranks=%D\n",rank,sf->nroots,sf->nleaves,sf->nranks);CHKERRQ(ierr);
59695fce210SBarry Smith     for (i=0; i<sf->nleaves; i++) {
59795fce210SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] %D <- (%D,%D)\n",rank,sf->mine ? sf->mine[i] : i,sf->remote[i].rank,sf->remote[i].index);CHKERRQ(ierr);
59895fce210SBarry Smith     }
59995fce210SBarry Smith     ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
60095fce210SBarry Smith     ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr);
60195fce210SBarry Smith     if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) {
60281bfa7aaSJed Brown       PetscMPIInt *tmpranks,*perm;
60381bfa7aaSJed Brown       ierr = PetscMalloc2(sf->nranks,&tmpranks,sf->nranks,&perm);CHKERRQ(ierr);
60481bfa7aaSJed Brown       ierr = PetscMemcpy(tmpranks,sf->ranks,sf->nranks*sizeof(tmpranks[0]));CHKERRQ(ierr);
60581bfa7aaSJed Brown       for (i=0; i<sf->nranks; i++) perm[i] = i;
60681bfa7aaSJed Brown       ierr = PetscSortMPIIntWithArray(sf->nranks,tmpranks,perm);CHKERRQ(ierr);
60795fce210SBarry Smith       ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Roots referenced by my leaves, by rank\n",rank);CHKERRQ(ierr);
60881bfa7aaSJed Brown       for (ii=0; ii<sf->nranks; ii++) {
60981bfa7aaSJed Brown         i = perm[ii];
6107904a332SBarry Smith         ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] %d: %D edges\n",rank,sf->ranks[i],sf->roffset[i+1]-sf->roffset[i]);CHKERRQ(ierr);
61195fce210SBarry Smith         for (j=sf->roffset[i]; j<sf->roffset[i+1]; j++) {
61295fce210SBarry Smith           ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d]    %D <- %D\n",rank,sf->rmine[j],sf->rremote[j]);CHKERRQ(ierr);
61395fce210SBarry Smith         }
61495fce210SBarry Smith       }
61581bfa7aaSJed Brown       ierr = PetscFree2(tmpranks,perm);CHKERRQ(ierr);
61695fce210SBarry Smith     }
61795fce210SBarry Smith     ierr = PetscViewerFlush(viewer);CHKERRQ(ierr);
6181575c14dSBarry Smith     ierr = PetscViewerASCIIPopSynchronized(viewer);CHKERRQ(ierr);
61995fce210SBarry Smith     ierr = PetscViewerASCIIPopTab(viewer);CHKERRQ(ierr);
62095fce210SBarry Smith   }
62195fce210SBarry Smith   PetscFunctionReturn(0);
62295fce210SBarry Smith }
62395fce210SBarry Smith 
62495fce210SBarry Smith /*@C
62595fce210SBarry Smith    PetscSFGetRanks - Get ranks and number of vertices referenced by leaves on this process
62695fce210SBarry Smith 
62795fce210SBarry Smith    Not Collective
62895fce210SBarry Smith 
62995fce210SBarry Smith    Input Arguments:
63095fce210SBarry Smith .  sf - star forest
63195fce210SBarry Smith 
63295fce210SBarry Smith    Output Arguments:
63395fce210SBarry Smith +  nranks - number of ranks referenced by local part
63495fce210SBarry Smith .  ranks - array of ranks
63595fce210SBarry Smith .  roffset - offset in rmine/rremote for each rank (length nranks+1)
63695fce210SBarry Smith .  rmine - concatenated array holding local indices referencing each remote rank
63795fce210SBarry Smith -  rremote - concatenated array holding remote indices referenced for each remote rank
63895fce210SBarry Smith 
63995fce210SBarry Smith    Level: developer
64095fce210SBarry Smith 
64195fce210SBarry Smith .seealso: PetscSFSetGraph()
64295fce210SBarry Smith @*/
64395fce210SBarry Smith PetscErrorCode PetscSFGetRanks(PetscSF sf,PetscInt *nranks,const PetscMPIInt **ranks,const PetscInt **roffset,const PetscInt **rmine,const PetscInt **rremote)
64495fce210SBarry Smith {
64595fce210SBarry Smith 
64695fce210SBarry Smith   PetscFunctionBegin;
64795fce210SBarry Smith   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
64829046d53SLisandro Dalcin   if (!sf->setupcalled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Must call PetscSFSetUp() before obtaining ranks");
64995fce210SBarry Smith   if (nranks)  *nranks  = sf->nranks;
65095fce210SBarry Smith   if (ranks)   *ranks   = sf->ranks;
65195fce210SBarry Smith   if (roffset) *roffset = sf->roffset;
65295fce210SBarry Smith   if (rmine)   *rmine   = sf->rmine;
65395fce210SBarry Smith   if (rremote) *rremote = sf->rremote;
65495fce210SBarry Smith   PetscFunctionReturn(0);
65595fce210SBarry Smith }
65695fce210SBarry Smith 
657b5a8e515SJed Brown static PetscBool InList(PetscMPIInt needle,PetscMPIInt n,const PetscMPIInt *list) {
658b5a8e515SJed Brown   PetscInt i;
659b5a8e515SJed Brown   for (i=0; i<n; i++) {
660b5a8e515SJed Brown     if (needle == list[i]) return PETSC_TRUE;
661b5a8e515SJed Brown   }
662b5a8e515SJed Brown   return PETSC_FALSE;
663b5a8e515SJed Brown }
664b5a8e515SJed Brown 
66595fce210SBarry Smith /*@C
66621c688dcSJed Brown    PetscSFSetUpRanks - Set up data structures associated with ranks; this is for internal use by PetscSF implementations.
66721c688dcSJed Brown 
66821c688dcSJed Brown    Collective
66921c688dcSJed Brown 
67021c688dcSJed Brown    Input Arguments:
671b5a8e515SJed Brown +  sf - PetscSF to set up; PetscSFSetGraph() must have been called
672b5a8e515SJed Brown -  dgroup - MPI_Group of ranks to be distinguished (e.g., for self or shared memory exchange)
67321c688dcSJed Brown 
67421c688dcSJed Brown    Level: developer
67521c688dcSJed Brown 
67621c688dcSJed Brown .seealso: PetscSFGetRanks()
67721c688dcSJed Brown @*/
678b5a8e515SJed Brown PetscErrorCode PetscSFSetUpRanks(PetscSF sf,MPI_Group dgroup)
67921c688dcSJed Brown {
68021c688dcSJed Brown   PetscErrorCode     ierr;
68121c688dcSJed Brown   PetscTable         table;
68221c688dcSJed Brown   PetscTablePosition pos;
683b5a8e515SJed Brown   PetscMPIInt        size,groupsize,*groupranks;
68421c688dcSJed Brown   PetscInt           i,*rcount,*ranks;
68521c688dcSJed Brown 
68621c688dcSJed Brown   PetscFunctionBegin;
68721c688dcSJed Brown   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
68829046d53SLisandro Dalcin   PetscSFCheckGraphSet(sf,1);
68921c688dcSJed Brown   ierr = MPI_Comm_size(PetscObjectComm((PetscObject)sf),&size);CHKERRQ(ierr);
69021c688dcSJed Brown   ierr = PetscTableCreate(10,size,&table);CHKERRQ(ierr);
69121c688dcSJed Brown   for (i=0; i<sf->nleaves; i++) {
69221c688dcSJed Brown     /* Log 1-based rank */
69321c688dcSJed Brown     ierr = PetscTableAdd(table,sf->remote[i].rank+1,1,ADD_VALUES);CHKERRQ(ierr);
69421c688dcSJed Brown   }
69521c688dcSJed Brown   ierr = PetscTableGetCount(table,&sf->nranks);CHKERRQ(ierr);
69621c688dcSJed Brown   ierr = PetscMalloc4(sf->nranks,&sf->ranks,sf->nranks+1,&sf->roffset,sf->nleaves,&sf->rmine,sf->nleaves,&sf->rremote);CHKERRQ(ierr);
69721c688dcSJed Brown   ierr = PetscMalloc2(sf->nranks,&rcount,sf->nranks,&ranks);CHKERRQ(ierr);
69821c688dcSJed Brown   ierr = PetscTableGetHeadPosition(table,&pos);CHKERRQ(ierr);
69921c688dcSJed Brown   for (i=0; i<sf->nranks; i++) {
70021c688dcSJed Brown     ierr = PetscTableGetNext(table,&pos,&ranks[i],&rcount[i]);CHKERRQ(ierr);
70121c688dcSJed Brown     ranks[i]--;             /* Convert back to 0-based */
70221c688dcSJed Brown   }
70321c688dcSJed Brown   ierr = PetscTableDestroy(&table);CHKERRQ(ierr);
704b5a8e515SJed Brown 
705b5a8e515SJed Brown   /* We expect that dgroup is reliably "small" while nranks could be large */
706b5a8e515SJed Brown   {
7077fb8a5e4SKarl Rupp     MPI_Group group = MPI_GROUP_NULL;
708b5a8e515SJed Brown     PetscMPIInt *dgroupranks;
709b5a8e515SJed Brown     ierr = MPI_Comm_group(PetscObjectComm((PetscObject)sf),&group);CHKERRQ(ierr);
710b5a8e515SJed Brown     ierr = MPI_Group_size(dgroup,&groupsize);CHKERRQ(ierr);
711b5a8e515SJed Brown     ierr = PetscMalloc1(groupsize,&dgroupranks);CHKERRQ(ierr);
712b5a8e515SJed Brown     ierr = PetscMalloc1(groupsize,&groupranks);CHKERRQ(ierr);
713b5a8e515SJed Brown     for (i=0; i<groupsize; i++) dgroupranks[i] = i;
714f3fc9a17SJed Brown     if (groupsize) {ierr = MPI_Group_translate_ranks(dgroup,groupsize,dgroupranks,group,groupranks);CHKERRQ(ierr);}
715b5a8e515SJed Brown     ierr = MPI_Group_free(&group);CHKERRQ(ierr);
716b5a8e515SJed Brown     ierr = PetscFree(dgroupranks);CHKERRQ(ierr);
717b5a8e515SJed Brown   }
718b5a8e515SJed Brown 
719b5a8e515SJed Brown   /* Partition ranks[] into distinguished (first sf->ndranks) followed by non-distinguished */
720b5a8e515SJed Brown   for (sf->ndranks=0,i=sf->nranks; sf->ndranks<i; ) {
721b5a8e515SJed Brown     for (i--; sf->ndranks<i; i--) { /* Scan i backward looking for distinguished rank */
722b5a8e515SJed Brown       if (InList(ranks[i],groupsize,groupranks)) break;
723b5a8e515SJed Brown     }
724b5a8e515SJed Brown     for ( ; sf->ndranks<=i; sf->ndranks++) { /* Scan sf->ndranks forward looking for non-distinguished rank */
725b5a8e515SJed Brown       if (!InList(ranks[sf->ndranks],groupsize,groupranks)) break;
726b5a8e515SJed Brown     }
727b5a8e515SJed Brown     if (sf->ndranks < i) {                         /* Swap ranks[sf->ndranks] with ranks[i] */
728b5a8e515SJed Brown       PetscInt    tmprank,tmpcount;
729b5a8e515SJed Brown       tmprank = ranks[i];
730b5a8e515SJed Brown       tmpcount = rcount[i];
731b5a8e515SJed Brown       ranks[i] = ranks[sf->ndranks];
732b5a8e515SJed Brown       rcount[i] = rcount[sf->ndranks];
733b5a8e515SJed Brown       ranks[sf->ndranks] = tmprank;
734b5a8e515SJed Brown       rcount[sf->ndranks] = tmpcount;
735b5a8e515SJed Brown       sf->ndranks++;
736b5a8e515SJed Brown     }
737b5a8e515SJed Brown   }
738b5a8e515SJed Brown   ierr = PetscFree(groupranks);CHKERRQ(ierr);
739b5a8e515SJed Brown   ierr = PetscSortIntWithArray(sf->ndranks,ranks,rcount);CHKERRQ(ierr);
740b5a8e515SJed Brown   ierr = PetscSortIntWithArray(sf->nranks-sf->ndranks,ranks+sf->ndranks,rcount+sf->ndranks);CHKERRQ(ierr);
74121c688dcSJed Brown   sf->roffset[0] = 0;
74221c688dcSJed Brown   for (i=0; i<sf->nranks; i++) {
74321c688dcSJed Brown     ierr = PetscMPIIntCast(ranks[i],sf->ranks+i);CHKERRQ(ierr);
74421c688dcSJed Brown     sf->roffset[i+1] = sf->roffset[i] + rcount[i];
74521c688dcSJed Brown     rcount[i]        = 0;
74621c688dcSJed Brown   }
74721c688dcSJed Brown   for (i=0; i<sf->nleaves; i++) {
748b5a8e515SJed Brown     PetscInt irank;
74921c688dcSJed Brown     /* Search for index of iremote[i].rank in sf->ranks */
750b5a8e515SJed Brown     ierr = PetscFindMPIInt(sf->remote[i].rank,sf->ndranks,sf->ranks,&irank);CHKERRQ(ierr);
751b5a8e515SJed Brown     if (irank < 0) {
752b5a8e515SJed Brown       ierr = PetscFindMPIInt(sf->remote[i].rank,sf->nranks-sf->ndranks,sf->ranks+sf->ndranks,&irank);CHKERRQ(ierr);
753b5a8e515SJed Brown       if (irank >= 0) irank += sf->ndranks;
75421c688dcSJed Brown     }
755b5a8e515SJed Brown     if (irank < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Could not find rank %D in array",sf->remote[i].rank);
75621c688dcSJed Brown     sf->rmine[sf->roffset[irank] + rcount[irank]]   = sf->mine ? sf->mine[i] : i;
75721c688dcSJed Brown     sf->rremote[sf->roffset[irank] + rcount[irank]] = sf->remote[i].index;
75821c688dcSJed Brown     rcount[irank]++;
75921c688dcSJed Brown   }
76021c688dcSJed Brown   ierr = PetscFree2(rcount,ranks);CHKERRQ(ierr);
76121c688dcSJed Brown   PetscFunctionReturn(0);
76221c688dcSJed Brown }
76321c688dcSJed Brown 
76421c688dcSJed Brown /*@C
76595fce210SBarry Smith    PetscSFGetGroups - gets incoming and outgoing process groups
76695fce210SBarry Smith 
76795fce210SBarry Smith    Collective
76895fce210SBarry Smith 
76995fce210SBarry Smith    Input Argument:
77095fce210SBarry Smith .  sf - star forest
77195fce210SBarry Smith 
77295fce210SBarry Smith    Output Arguments:
77395fce210SBarry Smith +  incoming - group of origin processes for incoming edges (leaves that reference my roots)
77495fce210SBarry Smith -  outgoing - group of destination processes for outgoing edges (roots that I reference)
77595fce210SBarry Smith 
77695fce210SBarry Smith    Level: developer
77795fce210SBarry Smith 
77895fce210SBarry Smith .seealso: PetscSFGetWindow(), PetscSFRestoreWindow()
77995fce210SBarry Smith @*/
78095fce210SBarry Smith PetscErrorCode PetscSFGetGroups(PetscSF sf,MPI_Group *incoming,MPI_Group *outgoing)
78195fce210SBarry Smith {
78295fce210SBarry Smith   PetscErrorCode ierr;
7837fb8a5e4SKarl Rupp   MPI_Group      group = MPI_GROUP_NULL;
78495fce210SBarry Smith 
78595fce210SBarry Smith   PetscFunctionBegin;
78629046d53SLisandro Dalcin   if (!sf->setupcalled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Must call PetscSFSetUp() before obtaining groups");
78795fce210SBarry Smith   if (sf->ingroup == MPI_GROUP_NULL) {
78895fce210SBarry Smith     PetscInt       i;
78995fce210SBarry Smith     const PetscInt *indegree;
79095fce210SBarry Smith     PetscMPIInt    rank,*outranks,*inranks;
79195fce210SBarry Smith     PetscSFNode    *remote;
79295fce210SBarry Smith     PetscSF        bgcount;
79395fce210SBarry Smith 
79495fce210SBarry Smith     /* Compute the number of incoming ranks */
795785e854fSJed Brown     ierr = PetscMalloc1(sf->nranks,&remote);CHKERRQ(ierr);
79695fce210SBarry Smith     for (i=0; i<sf->nranks; i++) {
79795fce210SBarry Smith       remote[i].rank  = sf->ranks[i];
79895fce210SBarry Smith       remote[i].index = 0;
79995fce210SBarry Smith     }
80095fce210SBarry Smith     ierr = PetscSFDuplicate(sf,PETSCSF_DUPLICATE_CONFONLY,&bgcount);CHKERRQ(ierr);
80195fce210SBarry Smith     ierr = PetscSFSetGraph(bgcount,1,sf->nranks,NULL,PETSC_COPY_VALUES,remote,PETSC_OWN_POINTER);CHKERRQ(ierr);
80295fce210SBarry Smith     ierr = PetscSFComputeDegreeBegin(bgcount,&indegree);CHKERRQ(ierr);
80395fce210SBarry Smith     ierr = PetscSFComputeDegreeEnd(bgcount,&indegree);CHKERRQ(ierr);
80495fce210SBarry Smith 
80595fce210SBarry Smith     /* Enumerate the incoming ranks */
806dcca6d9dSJed Brown     ierr = PetscMalloc2(indegree[0],&inranks,sf->nranks,&outranks);CHKERRQ(ierr);
80795fce210SBarry Smith     ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)sf),&rank);CHKERRQ(ierr);
80895fce210SBarry Smith     for (i=0; i<sf->nranks; i++) outranks[i] = rank;
80995fce210SBarry Smith     ierr = PetscSFGatherBegin(bgcount,MPI_INT,outranks,inranks);CHKERRQ(ierr);
81095fce210SBarry Smith     ierr = PetscSFGatherEnd(bgcount,MPI_INT,outranks,inranks);CHKERRQ(ierr);
81195fce210SBarry Smith     ierr = MPI_Comm_group(PetscObjectComm((PetscObject)sf),&group);CHKERRQ(ierr);
81295fce210SBarry Smith     ierr = MPI_Group_incl(group,indegree[0],inranks,&sf->ingroup);CHKERRQ(ierr);
81395fce210SBarry Smith     ierr = MPI_Group_free(&group);CHKERRQ(ierr);
81495fce210SBarry Smith     ierr = PetscFree2(inranks,outranks);CHKERRQ(ierr);
81595fce210SBarry Smith     ierr = PetscSFDestroy(&bgcount);CHKERRQ(ierr);
81695fce210SBarry Smith   }
81795fce210SBarry Smith   *incoming = sf->ingroup;
81895fce210SBarry Smith 
81995fce210SBarry Smith   if (sf->outgroup == MPI_GROUP_NULL) {
82095fce210SBarry Smith     ierr = MPI_Comm_group(PetscObjectComm((PetscObject)sf),&group);CHKERRQ(ierr);
82195fce210SBarry Smith     ierr = MPI_Group_incl(group,sf->nranks,sf->ranks,&sf->outgroup);CHKERRQ(ierr);
82295fce210SBarry Smith     ierr = MPI_Group_free(&group);CHKERRQ(ierr);
82395fce210SBarry Smith   }
82495fce210SBarry Smith   *outgoing = sf->outgroup;
82595fce210SBarry Smith   PetscFunctionReturn(0);
82695fce210SBarry Smith }
82795fce210SBarry Smith 
82829046d53SLisandro Dalcin /*@
82995fce210SBarry Smith    PetscSFGetMultiSF - gets the inner SF implemeting gathers and scatters
83095fce210SBarry Smith 
83195fce210SBarry Smith    Collective
83295fce210SBarry Smith 
83395fce210SBarry Smith    Input Argument:
83495fce210SBarry Smith .  sf - star forest that may contain roots with 0 or with more than 1 vertex
83595fce210SBarry Smith 
83695fce210SBarry Smith    Output Arguments:
83795fce210SBarry Smith .  multi - star forest with split roots, such that each root has degree exactly 1
83895fce210SBarry Smith 
83995fce210SBarry Smith    Level: developer
84095fce210SBarry Smith 
84195fce210SBarry Smith    Notes:
84295fce210SBarry Smith 
84395fce210SBarry Smith    In most cases, users should use PetscSFGatherBegin() and PetscSFScatterBegin() instead of manipulating multi
84495fce210SBarry Smith    directly. Since multi satisfies the stronger condition that each entry in the global space has exactly one incoming
84595fce210SBarry Smith    edge, it is a candidate for future optimization that might involve its removal.
84695fce210SBarry Smith 
84795fce210SBarry Smith .seealso: PetscSFSetGraph(), PetscSFGatherBegin(), PetscSFScatterBegin()
84895fce210SBarry Smith @*/
84995fce210SBarry Smith PetscErrorCode PetscSFGetMultiSF(PetscSF sf,PetscSF *multi)
85095fce210SBarry Smith {
85195fce210SBarry Smith   PetscErrorCode ierr;
85295fce210SBarry Smith 
85395fce210SBarry Smith   PetscFunctionBegin;
85495fce210SBarry Smith   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
85595fce210SBarry Smith   PetscValidPointer(multi,2);
85695fce210SBarry Smith   if (sf->nroots < 0) {         /* Graph has not been set yet; why do we need this? */
85795fce210SBarry Smith     ierr   = PetscSFDuplicate(sf,PETSCSF_DUPLICATE_RANKS,&sf->multi);CHKERRQ(ierr);
85895fce210SBarry Smith     *multi = sf->multi;
85995fce210SBarry Smith     PetscFunctionReturn(0);
86095fce210SBarry Smith   }
86195fce210SBarry Smith   if (!sf->multi) {
86295fce210SBarry Smith     const PetscInt *indegree;
8639837ea96SMatthew G. Knepley     PetscInt       i,*inoffset,*outones,*outoffset,maxlocal;
86495fce210SBarry Smith     PetscSFNode    *remote;
86529046d53SLisandro Dalcin     maxlocal = sf->maxleaf+1; /* TODO: We should use PetscSFGetLeafRange() */
86695fce210SBarry Smith     ierr = PetscSFComputeDegreeBegin(sf,&indegree);CHKERRQ(ierr);
86795fce210SBarry Smith     ierr = PetscSFComputeDegreeEnd(sf,&indegree);CHKERRQ(ierr);
8689837ea96SMatthew G. Knepley     ierr = PetscMalloc3(sf->nroots+1,&inoffset,maxlocal,&outones,maxlocal,&outoffset);CHKERRQ(ierr);
86995fce210SBarry Smith     inoffset[0] = 0;
87095fce210SBarry Smith     for (i=0; i<sf->nroots; i++) inoffset[i+1] = inoffset[i] + indegree[i];
8719837ea96SMatthew G. Knepley     for (i=0; i<maxlocal; i++) outones[i] = 1;
872dbd2ff41SBarry Smith     ierr = PetscSFFetchAndOpBegin(sf,MPIU_INT,inoffset,outones,outoffset,MPI_SUM);CHKERRQ(ierr);
873dbd2ff41SBarry Smith     ierr = PetscSFFetchAndOpEnd(sf,MPIU_INT,inoffset,outones,outoffset,MPI_SUM);CHKERRQ(ierr);
87495fce210SBarry Smith     for (i=0; i<sf->nroots; i++) inoffset[i] -= indegree[i]; /* Undo the increment */
87595fce210SBarry Smith #if 0
87695fce210SBarry Smith #if defined(PETSC_USE_DEBUG)                                 /* Check that the expected number of increments occurred */
87795fce210SBarry Smith     for (i=0; i<sf->nroots; i++) {
87895fce210SBarry Smith       if (inoffset[i] + indegree[i] != inoffset[i+1]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect result after PetscSFFetchAndOp");
87995fce210SBarry Smith     }
88095fce210SBarry Smith #endif
88195fce210SBarry Smith #endif
882785e854fSJed Brown     ierr = PetscMalloc1(sf->nleaves,&remote);CHKERRQ(ierr);
88395fce210SBarry Smith     for (i=0; i<sf->nleaves; i++) {
88495fce210SBarry Smith       remote[i].rank  = sf->remote[i].rank;
88538e7336fSToby Isaac       remote[i].index = outoffset[sf->mine ? sf->mine[i] : i];
88695fce210SBarry Smith     }
88795fce210SBarry Smith     ierr = PetscSFDuplicate(sf,PETSCSF_DUPLICATE_RANKS,&sf->multi);CHKERRQ(ierr);
88801365b40SToby Isaac     ierr = PetscSFSetGraph(sf->multi,inoffset[sf->nroots],sf->nleaves,sf->mine,PETSC_COPY_VALUES,remote,PETSC_OWN_POINTER);CHKERRQ(ierr);
88995fce210SBarry Smith     if (sf->rankorder) {        /* Sort the ranks */
89095fce210SBarry Smith       PetscMPIInt rank;
89195fce210SBarry Smith       PetscInt    *inranks,*newoffset,*outranks,*newoutoffset,*tmpoffset,maxdegree;
89295fce210SBarry Smith       PetscSFNode *newremote;
89395fce210SBarry Smith       ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)sf),&rank);CHKERRQ(ierr);
89495fce210SBarry Smith       for (i=0,maxdegree=0; i<sf->nroots; i++) maxdegree = PetscMax(maxdegree,indegree[i]);
8959837ea96SMatthew G. Knepley       ierr = PetscMalloc5(sf->multi->nroots,&inranks,sf->multi->nroots,&newoffset,maxlocal,&outranks,maxlocal,&newoutoffset,maxdegree,&tmpoffset);CHKERRQ(ierr);
8969837ea96SMatthew G. Knepley       for (i=0; i<maxlocal; i++) outranks[i] = rank;
8978bfbc91cSJed Brown       ierr = PetscSFReduceBegin(sf->multi,MPIU_INT,outranks,inranks,MPIU_REPLACE);CHKERRQ(ierr);
8988bfbc91cSJed Brown       ierr = PetscSFReduceEnd(sf->multi,MPIU_INT,outranks,inranks,MPIU_REPLACE);CHKERRQ(ierr);
89995fce210SBarry Smith       /* Sort the incoming ranks at each vertex, build the inverse map */
90095fce210SBarry Smith       for (i=0; i<sf->nroots; i++) {
90195fce210SBarry Smith         PetscInt j;
90295fce210SBarry Smith         for (j=0; j<indegree[i]; j++) tmpoffset[j] = j;
90395fce210SBarry Smith         ierr = PetscSortIntWithArray(indegree[i],inranks+inoffset[i],tmpoffset);CHKERRQ(ierr);
90495fce210SBarry Smith         for (j=0; j<indegree[i]; j++) newoffset[inoffset[i] + tmpoffset[j]] = inoffset[i] + j;
90595fce210SBarry Smith       }
90695fce210SBarry Smith       ierr = PetscSFBcastBegin(sf->multi,MPIU_INT,newoffset,newoutoffset);CHKERRQ(ierr);
90795fce210SBarry Smith       ierr = PetscSFBcastEnd(sf->multi,MPIU_INT,newoffset,newoutoffset);CHKERRQ(ierr);
908785e854fSJed Brown       ierr = PetscMalloc1(sf->nleaves,&newremote);CHKERRQ(ierr);
90995fce210SBarry Smith       for (i=0; i<sf->nleaves; i++) {
91095fce210SBarry Smith         newremote[i].rank  = sf->remote[i].rank;
91101365b40SToby Isaac         newremote[i].index = newoutoffset[sf->mine ? sf->mine[i] : i];
91295fce210SBarry Smith       }
91301365b40SToby Isaac       ierr = PetscSFSetGraph(sf->multi,inoffset[sf->nroots],sf->nleaves,sf->mine,PETSC_COPY_VALUES,newremote,PETSC_OWN_POINTER);CHKERRQ(ierr);
91495fce210SBarry Smith       ierr = PetscFree5(inranks,newoffset,outranks,newoutoffset,tmpoffset);CHKERRQ(ierr);
91595fce210SBarry Smith     }
91695fce210SBarry Smith     ierr = PetscFree3(inoffset,outones,outoffset);CHKERRQ(ierr);
91795fce210SBarry Smith   }
91895fce210SBarry Smith   *multi = sf->multi;
91995fce210SBarry Smith   PetscFunctionReturn(0);
92095fce210SBarry Smith }
92195fce210SBarry Smith 
92295fce210SBarry Smith /*@C
92395fce210SBarry Smith    PetscSFCreateEmbeddedSF - removes edges from all but the selected roots, does not remap indices
92495fce210SBarry Smith 
92595fce210SBarry Smith    Collective
92695fce210SBarry Smith 
92795fce210SBarry Smith    Input Arguments:
92895fce210SBarry Smith +  sf - original star forest
92995fce210SBarry Smith .  nroots - number of roots to select on this process
93095fce210SBarry Smith -  selected - selected roots on this process
93195fce210SBarry Smith 
93295fce210SBarry Smith    Output Arguments:
93395fce210SBarry Smith .  newsf - new star forest
93495fce210SBarry Smith 
93595fce210SBarry Smith    Level: advanced
93695fce210SBarry Smith 
93795fce210SBarry Smith    Note:
93895fce210SBarry Smith    To use the new PetscSF, it may be necessary to know the indices of the leaves that are still participating. This can
93995fce210SBarry Smith    be done by calling PetscSFGetGraph().
94095fce210SBarry Smith 
94195fce210SBarry Smith .seealso: PetscSFSetGraph(), PetscSFGetGraph()
94295fce210SBarry Smith @*/
94395fce210SBarry Smith PetscErrorCode PetscSFCreateEmbeddedSF(PetscSF sf,PetscInt nroots,const PetscInt *selected,PetscSF *newsf)
94495fce210SBarry Smith {
9450511a646SMatthew G. Knepley   PetscInt      *rootdata, *leafdata, *ilocal;
94695fce210SBarry Smith   PetscSFNode   *iremote;
947fc1ede2bSMatthew G. Knepley   PetscInt       leafsize = 0, nleaves = 0, n, i;
9480511a646SMatthew G. Knepley   PetscErrorCode ierr;
94995fce210SBarry Smith 
95095fce210SBarry Smith   PetscFunctionBegin;
95195fce210SBarry Smith   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
95229046d53SLisandro Dalcin   PetscSFCheckGraphSet(sf,1);
95395fce210SBarry Smith   if (nroots) PetscValidPointer(selected,3);
95495fce210SBarry Smith   PetscValidPointer(newsf,4);
9550511a646SMatthew G. Knepley   if (sf->mine) for (i = 0; i < sf->nleaves; ++i) {leafsize = PetscMax(leafsize, sf->mine[i]+1);}
9560511a646SMatthew G. Knepley   else leafsize = sf->nleaves;
9571795a4d1SJed Brown   ierr = PetscCalloc2(sf->nroots,&rootdata,leafsize,&leafdata);CHKERRQ(ierr);
9580511a646SMatthew G. Knepley   for (i=0; i<nroots; ++i) rootdata[selected[i]] = 1;
95995fce210SBarry Smith   ierr = PetscSFBcastBegin(sf,MPIU_INT,rootdata,leafdata);CHKERRQ(ierr);
96095fce210SBarry Smith   ierr = PetscSFBcastEnd(sf,MPIU_INT,rootdata,leafdata);CHKERRQ(ierr);
9610511a646SMatthew G. Knepley   for (i = 0; i < leafsize; ++i) nleaves += leafdata[i];
962785e854fSJed Brown   ierr = PetscMalloc1(nleaves,&ilocal);CHKERRQ(ierr);
963785e854fSJed Brown   ierr = PetscMalloc1(nleaves,&iremote);CHKERRQ(ierr);
964fc1ede2bSMatthew G. Knepley   for (i = 0, n = 0; i < sf->nleaves; ++i) {
9650511a646SMatthew G. Knepley     const PetscInt lidx = sf->mine ? sf->mine[i] : i;
9660511a646SMatthew G. Knepley 
9670511a646SMatthew G. Knepley     if (leafdata[lidx]) {
968fc1ede2bSMatthew G. Knepley       ilocal[n]        = lidx;
969fc1ede2bSMatthew G. Knepley       iremote[n].rank  = sf->remote[i].rank;
970fc1ede2bSMatthew G. Knepley       iremote[n].index = sf->remote[i].index;
971fc1ede2bSMatthew G. Knepley       ++n;
97295fce210SBarry Smith     }
97395fce210SBarry Smith   }
974fc1ede2bSMatthew G. Knepley   if (n != nleaves) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_PLIB, "There is a size mismatch in the SF embedding, %d != %d", n, nleaves);
97595fce210SBarry Smith   ierr = PetscSFDuplicate(sf,PETSCSF_DUPLICATE_RANKS,newsf);CHKERRQ(ierr);
97695fce210SBarry Smith   ierr = PetscSFSetGraph(*newsf,sf->nroots,nleaves,ilocal,PETSC_OWN_POINTER,iremote,PETSC_OWN_POINTER);CHKERRQ(ierr);
97795fce210SBarry Smith   ierr = PetscFree2(rootdata,leafdata);CHKERRQ(ierr);
97895fce210SBarry Smith   PetscFunctionReturn(0);
97995fce210SBarry Smith }
98095fce210SBarry Smith 
9812f5fb4c2SMatthew G. Knepley /*@C
9822f5fb4c2SMatthew G. Knepley   PetscSFCreateEmbeddedLeafSF - removes edges from all but the selected leaves, does not remap indices
9832f5fb4c2SMatthew G. Knepley 
9842f5fb4c2SMatthew G. Knepley   Collective
9852f5fb4c2SMatthew G. Knepley 
9862f5fb4c2SMatthew G. Knepley   Input Arguments:
9872f5fb4c2SMatthew G. Knepley + sf - original star forest
9882f5fb4c2SMatthew G. Knepley . nleaves - number of leaves to select on this process
9892f5fb4c2SMatthew G. Knepley - selected - selected leaves on this process
9902f5fb4c2SMatthew G. Knepley 
9912f5fb4c2SMatthew G. Knepley   Output Arguments:
9922f5fb4c2SMatthew G. Knepley .  newsf - new star forest
9932f5fb4c2SMatthew G. Knepley 
9942f5fb4c2SMatthew G. Knepley   Level: advanced
9952f5fb4c2SMatthew G. Knepley 
9962f5fb4c2SMatthew G. Knepley .seealso: PetscSFCreateEmbeddedSF(), PetscSFSetGraph(), PetscSFGetGraph()
9972f5fb4c2SMatthew G. Knepley @*/
9982f5fb4c2SMatthew G. Knepley PetscErrorCode PetscSFCreateEmbeddedLeafSF(PetscSF sf, PetscInt nleaves, const PetscInt *selected, PetscSF *newsf)
9992f5fb4c2SMatthew G. Knepley {
10002f5fb4c2SMatthew G. Knepley   PetscSFNode   *iremote;
10012f5fb4c2SMatthew G. Knepley   PetscInt      *ilocal;
10022f5fb4c2SMatthew G. Knepley   PetscInt       i;
10032f5fb4c2SMatthew G. Knepley   PetscErrorCode ierr;
10042f5fb4c2SMatthew G. Knepley 
10052f5fb4c2SMatthew G. Knepley   PetscFunctionBegin;
10062f5fb4c2SMatthew G. Knepley   PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1);
100729046d53SLisandro Dalcin   PetscSFCheckGraphSet(sf, 1);
10082f5fb4c2SMatthew G. Knepley   if (nleaves) PetscValidPointer(selected, 3);
10092f5fb4c2SMatthew G. Knepley   PetscValidPointer(newsf, 4);
10102f5fb4c2SMatthew G. Knepley   ierr = PetscMalloc1(nleaves, &ilocal);CHKERRQ(ierr);
10112f5fb4c2SMatthew G. Knepley   ierr = PetscMalloc1(nleaves, &iremote);CHKERRQ(ierr);
10122f5fb4c2SMatthew G. Knepley   for (i = 0; i < nleaves; ++i) {
10132f5fb4c2SMatthew G. Knepley     const PetscInt l = selected[i];
10142f5fb4c2SMatthew G. Knepley 
10152f5fb4c2SMatthew G. Knepley     ilocal[i]        = sf->mine ? sf->mine[l] : l;
10162f5fb4c2SMatthew G. Knepley     iremote[i].rank  = sf->remote[l].rank;
10172f5fb4c2SMatthew G. Knepley     iremote[i].index = sf->remote[l].index;
10182f5fb4c2SMatthew G. Knepley   }
10192f5fb4c2SMatthew G. Knepley   ierr = PetscSFDuplicate(sf, PETSCSF_DUPLICATE_RANKS, newsf);CHKERRQ(ierr);
10202f5fb4c2SMatthew G. Knepley   ierr = PetscSFSetGraph(*newsf, sf->nroots, nleaves, ilocal, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER);CHKERRQ(ierr);
10212f5fb4c2SMatthew G. Knepley   PetscFunctionReturn(0);
10222f5fb4c2SMatthew G. Knepley }
10232f5fb4c2SMatthew G. Knepley 
102495fce210SBarry Smith /*@C
102595fce210SBarry Smith    PetscSFBcastBegin - begin pointwise broadcast to be concluded with call to PetscSFBcastEnd()
102695fce210SBarry Smith 
102795fce210SBarry Smith    Collective on PetscSF
102895fce210SBarry Smith 
102995fce210SBarry Smith    Input Arguments:
103095fce210SBarry Smith +  sf - star forest on which to communicate
103195fce210SBarry Smith .  unit - data type associated with each node
103295fce210SBarry Smith -  rootdata - buffer to broadcast
103395fce210SBarry Smith 
103495fce210SBarry Smith    Output Arguments:
103595fce210SBarry Smith .  leafdata - buffer to update with values from each leaf's respective root
103695fce210SBarry Smith 
103795fce210SBarry Smith    Level: intermediate
103895fce210SBarry Smith 
103995fce210SBarry Smith .seealso: PetscSFCreate(), PetscSFSetGraph(), PetscSFView(), PetscSFBcastEnd(), PetscSFReduceBegin()
104095fce210SBarry Smith @*/
104195fce210SBarry Smith PetscErrorCode PetscSFBcastBegin(PetscSF sf,MPI_Datatype unit,const void *rootdata,void *leafdata)
104295fce210SBarry Smith {
104395fce210SBarry Smith   PetscErrorCode ierr;
104495fce210SBarry Smith 
104595fce210SBarry Smith   PetscFunctionBegin;
104695fce210SBarry Smith   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
104795fce210SBarry Smith   ierr = PetscSFSetUp(sf);CHKERRQ(ierr);
104829046d53SLisandro Dalcin   ierr = PetscLogEventBegin(PETSCSF_BcastBegin,sf,0,0,0);CHKERRQ(ierr);
104995fce210SBarry Smith   ierr = (*sf->ops->BcastBegin)(sf,unit,rootdata,leafdata);CHKERRQ(ierr);
1050563ffbabSMatthew G. Knepley   ierr = PetscLogEventEnd(PETSCSF_BcastBegin,sf,0,0,0);CHKERRQ(ierr);
105195fce210SBarry Smith   PetscFunctionReturn(0);
105295fce210SBarry Smith }
105395fce210SBarry Smith 
105495fce210SBarry Smith /*@C
105595fce210SBarry Smith    PetscSFBcastEnd - end a broadcast operation started with PetscSFBcastBegin()
105695fce210SBarry Smith 
105795fce210SBarry Smith    Collective
105895fce210SBarry Smith 
105995fce210SBarry Smith    Input Arguments:
106095fce210SBarry Smith +  sf - star forest
106195fce210SBarry Smith .  unit - data type
106295fce210SBarry Smith -  rootdata - buffer to broadcast
106395fce210SBarry Smith 
106495fce210SBarry Smith    Output Arguments:
106595fce210SBarry Smith .  leafdata - buffer to update with values from each leaf's respective root
106695fce210SBarry Smith 
106795fce210SBarry Smith    Level: intermediate
106895fce210SBarry Smith 
106995fce210SBarry Smith .seealso: PetscSFSetGraph(), PetscSFReduceEnd()
107095fce210SBarry Smith @*/
107195fce210SBarry Smith PetscErrorCode PetscSFBcastEnd(PetscSF sf,MPI_Datatype unit,const void *rootdata,void *leafdata)
107295fce210SBarry Smith {
107395fce210SBarry Smith   PetscErrorCode ierr;
107495fce210SBarry Smith 
107595fce210SBarry Smith   PetscFunctionBegin;
107695fce210SBarry Smith   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
107795fce210SBarry Smith   ierr = PetscSFSetUp(sf);CHKERRQ(ierr);
107829046d53SLisandro Dalcin   ierr = PetscLogEventBegin(PETSCSF_BcastEnd,sf,0,0,0);CHKERRQ(ierr);
107995fce210SBarry Smith   ierr = (*sf->ops->BcastEnd)(sf,unit,rootdata,leafdata);CHKERRQ(ierr);
1080563ffbabSMatthew G. Knepley   ierr = PetscLogEventEnd(PETSCSF_BcastEnd,sf,0,0,0);CHKERRQ(ierr);
108195fce210SBarry Smith   PetscFunctionReturn(0);
108295fce210SBarry Smith }
108395fce210SBarry Smith 
108495fce210SBarry Smith /*@C
108595fce210SBarry Smith    PetscSFReduceBegin - begin reduction of leafdata into rootdata, to be completed with call to PetscSFReduceEnd()
108695fce210SBarry Smith 
108795fce210SBarry Smith    Collective
108895fce210SBarry Smith 
108995fce210SBarry Smith    Input Arguments:
109095fce210SBarry Smith +  sf - star forest
109195fce210SBarry Smith .  unit - data type
109295fce210SBarry Smith .  leafdata - values to reduce
109395fce210SBarry Smith -  op - reduction operation
109495fce210SBarry Smith 
109595fce210SBarry Smith    Output Arguments:
109695fce210SBarry Smith .  rootdata - result of reduction of values from all leaves of each root
109795fce210SBarry Smith 
109895fce210SBarry Smith    Level: intermediate
109995fce210SBarry Smith 
110095fce210SBarry Smith .seealso: PetscSFBcastBegin()
110195fce210SBarry Smith @*/
110295fce210SBarry Smith PetscErrorCode PetscSFReduceBegin(PetscSF sf,MPI_Datatype unit,const void *leafdata,void *rootdata,MPI_Op op)
110395fce210SBarry Smith {
110495fce210SBarry Smith   PetscErrorCode ierr;
110595fce210SBarry Smith 
110695fce210SBarry Smith   PetscFunctionBegin;
110795fce210SBarry Smith   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
110895fce210SBarry Smith   ierr = PetscSFSetUp(sf);CHKERRQ(ierr);
110929046d53SLisandro Dalcin   ierr = PetscLogEventBegin(PETSCSF_ReduceBegin,sf,0,0,0);CHKERRQ(ierr);
111095fce210SBarry Smith   ierr = (sf->ops->ReduceBegin)(sf,unit,leafdata,rootdata,op);CHKERRQ(ierr);
1111563ffbabSMatthew G. Knepley   ierr = PetscLogEventEnd(PETSCSF_ReduceBegin,sf,0,0,0);CHKERRQ(ierr);
111295fce210SBarry Smith   PetscFunctionReturn(0);
111395fce210SBarry Smith }
111495fce210SBarry Smith 
111595fce210SBarry Smith /*@C
111695fce210SBarry Smith    PetscSFReduceEnd - end a reduction operation started with PetscSFReduceBegin()
111795fce210SBarry Smith 
111895fce210SBarry Smith    Collective
111995fce210SBarry Smith 
112095fce210SBarry Smith    Input Arguments:
112195fce210SBarry Smith +  sf - star forest
112295fce210SBarry Smith .  unit - data type
112395fce210SBarry Smith .  leafdata - values to reduce
112495fce210SBarry Smith -  op - reduction operation
112595fce210SBarry Smith 
112695fce210SBarry Smith    Output Arguments:
112795fce210SBarry Smith .  rootdata - result of reduction of values from all leaves of each root
112895fce210SBarry Smith 
112995fce210SBarry Smith    Level: intermediate
113095fce210SBarry Smith 
113195fce210SBarry Smith .seealso: PetscSFSetGraph(), PetscSFBcastEnd()
113295fce210SBarry Smith @*/
113395fce210SBarry Smith PetscErrorCode PetscSFReduceEnd(PetscSF sf,MPI_Datatype unit,const void *leafdata,void *rootdata,MPI_Op op)
113495fce210SBarry Smith {
113595fce210SBarry Smith   PetscErrorCode ierr;
113695fce210SBarry Smith 
113795fce210SBarry Smith   PetscFunctionBegin;
113895fce210SBarry Smith   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
113995fce210SBarry Smith   ierr = PetscSFSetUp(sf);CHKERRQ(ierr);
114029046d53SLisandro Dalcin   ierr = PetscLogEventBegin(PETSCSF_ReduceEnd,sf,0,0,0);CHKERRQ(ierr);
114195fce210SBarry Smith   ierr = (*sf->ops->ReduceEnd)(sf,unit,leafdata,rootdata,op);CHKERRQ(ierr);
1142563ffbabSMatthew G. Knepley   ierr = PetscLogEventEnd(PETSCSF_ReduceEnd,sf,0,0,0);CHKERRQ(ierr);
114395fce210SBarry Smith   PetscFunctionReturn(0);
114495fce210SBarry Smith }
114595fce210SBarry Smith 
114695fce210SBarry Smith /*@C
114795fce210SBarry Smith    PetscSFComputeDegreeBegin - begin computation of degree for each root vertex, to be completed with PetscSFComputeDegreeEnd()
114895fce210SBarry Smith 
114995fce210SBarry Smith    Collective
115095fce210SBarry Smith 
115195fce210SBarry Smith    Input Arguments:
115295fce210SBarry Smith .  sf - star forest
115395fce210SBarry Smith 
115495fce210SBarry Smith    Output Arguments:
115595fce210SBarry Smith .  degree - degree of each root vertex
115695fce210SBarry Smith 
115795fce210SBarry Smith    Level: advanced
115895fce210SBarry Smith 
115995fce210SBarry Smith .seealso: PetscSFGatherBegin()
116095fce210SBarry Smith @*/
116195fce210SBarry Smith PetscErrorCode PetscSFComputeDegreeBegin(PetscSF sf,const PetscInt **degree)
116295fce210SBarry Smith {
116395fce210SBarry Smith   PetscErrorCode ierr;
116495fce210SBarry Smith 
116595fce210SBarry Smith   PetscFunctionBegin;
116695fce210SBarry Smith   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
116795fce210SBarry Smith   PetscSFCheckGraphSet(sf,1);
116895fce210SBarry Smith   PetscValidPointer(degree,2);
1169803bd9e8SMatthew G. Knepley   if (!sf->degreeknown) {
117029046d53SLisandro Dalcin     PetscInt i, nroots = sf->nroots, maxlocal = sf->maxleaf+1;  /* TODO: We should use PetscSFGetLeafRange() */
1171803bd9e8SMatthew G. Knepley     if (sf->degree) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Calls to PetscSFComputeDegreeBegin() cannot be nested.");
117229046d53SLisandro Dalcin     ierr = PetscMalloc1(nroots,&sf->degree);CHKERRQ(ierr);
117329046d53SLisandro Dalcin     ierr = PetscMalloc1(PetscMax(maxlocal,1),&sf->degreetmp);CHKERRQ(ierr); /* allocate at least one entry, see check in PetscSFComputeDegreeEnd() */
117429046d53SLisandro Dalcin     for (i=0; i<nroots; i++) sf->degree[i] = 0;
11759837ea96SMatthew G. Knepley     for (i=0; i<maxlocal; i++) sf->degreetmp[i] = 1;
1176dbd2ff41SBarry Smith     ierr = PetscSFReduceBegin(sf,MPIU_INT,sf->degreetmp,sf->degree,MPI_SUM);CHKERRQ(ierr);
117795fce210SBarry Smith   }
117895fce210SBarry Smith   *degree = NULL;
117995fce210SBarry Smith   PetscFunctionReturn(0);
118095fce210SBarry Smith }
118195fce210SBarry Smith 
118295fce210SBarry Smith /*@C
118395fce210SBarry Smith    PetscSFComputeDegreeEnd - complete computation of degree for each root vertex, started with PetscSFComputeDegreeBegin()
118495fce210SBarry Smith 
118595fce210SBarry Smith    Collective
118695fce210SBarry Smith 
118795fce210SBarry Smith    Input Arguments:
118895fce210SBarry Smith .  sf - star forest
118995fce210SBarry Smith 
119095fce210SBarry Smith    Output Arguments:
119195fce210SBarry Smith .  degree - degree of each root vertex
119295fce210SBarry Smith 
119395fce210SBarry Smith    Level: developer
119495fce210SBarry Smith 
119595fce210SBarry Smith .seealso:
119695fce210SBarry Smith @*/
119795fce210SBarry Smith PetscErrorCode PetscSFComputeDegreeEnd(PetscSF sf,const PetscInt **degree)
119895fce210SBarry Smith {
119995fce210SBarry Smith   PetscErrorCode ierr;
120095fce210SBarry Smith 
120195fce210SBarry Smith   PetscFunctionBegin;
120295fce210SBarry Smith   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
120395fce210SBarry Smith   PetscSFCheckGraphSet(sf,1);
120429046d53SLisandro Dalcin   PetscValidPointer(degree,2);
120595fce210SBarry Smith   if (!sf->degreeknown) {
120629046d53SLisandro Dalcin     if (!sf->degreetmp) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Must call PetscSFComputeDegreeBegin() before PetscSFComputeDegreeEnd()");
1207dbd2ff41SBarry Smith     ierr = PetscSFReduceEnd(sf,MPIU_INT,sf->degreetmp,sf->degree,MPI_SUM);CHKERRQ(ierr);
120895fce210SBarry Smith     ierr = PetscFree(sf->degreetmp);CHKERRQ(ierr);
120995fce210SBarry Smith     sf->degreeknown = PETSC_TRUE;
121095fce210SBarry Smith   }
121195fce210SBarry Smith   *degree = sf->degree;
121295fce210SBarry Smith   PetscFunctionReturn(0);
121395fce210SBarry Smith }
121495fce210SBarry Smith 
121595fce210SBarry Smith /*@C
121695fce210SBarry Smith    PetscSFFetchAndOpBegin - begin operation that fetches values from root and updates atomically by applying operation using my leaf value, to be completed with PetscSFFetchAndOpEnd()
121795fce210SBarry Smith 
121895fce210SBarry Smith    Collective
121995fce210SBarry Smith 
122095fce210SBarry Smith    Input Arguments:
122195fce210SBarry Smith +  sf - star forest
122295fce210SBarry Smith .  unit - data type
122395fce210SBarry Smith .  leafdata - leaf values to use in reduction
122495fce210SBarry Smith -  op - operation to use for reduction
122595fce210SBarry Smith 
122695fce210SBarry Smith    Output Arguments:
122795fce210SBarry Smith +  rootdata - root values to be updated, input state is seen by first process to perform an update
122895fce210SBarry Smith -  leafupdate - state at each leaf's respective root immediately prior to my atomic update
122995fce210SBarry Smith 
123095fce210SBarry Smith    Level: advanced
123195fce210SBarry Smith 
123295fce210SBarry Smith    Note:
123395fce210SBarry Smith    The update is only atomic at the granularity provided by the hardware. Different roots referenced by the same process
123495fce210SBarry Smith    might be updated in a different order. Furthermore, if a composite type is used for the unit datatype, atomicity is
123595fce210SBarry Smith    not guaranteed across the whole vertex. Therefore, this function is mostly only used with primitive types such as
123695fce210SBarry Smith    integers.
123795fce210SBarry Smith 
123895fce210SBarry Smith .seealso: PetscSFComputeDegreeBegin(), PetscSFReduceBegin(), PetscSFSetGraph()
123995fce210SBarry Smith @*/
124095fce210SBarry Smith PetscErrorCode PetscSFFetchAndOpBegin(PetscSF sf,MPI_Datatype unit,void *rootdata,const void *leafdata,void *leafupdate,MPI_Op op)
124195fce210SBarry Smith {
124295fce210SBarry Smith   PetscErrorCode ierr;
124395fce210SBarry Smith 
124495fce210SBarry Smith   PetscFunctionBegin;
124595fce210SBarry Smith   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
124695fce210SBarry Smith   ierr = PetscSFSetUp(sf);CHKERRQ(ierr);
124729046d53SLisandro Dalcin   ierr = PetscLogEventBegin(PETSCSF_FetchAndOpBegin,sf,0,0,0);CHKERRQ(ierr);
124895fce210SBarry Smith   ierr = (*sf->ops->FetchAndOpBegin)(sf,unit,rootdata,leafdata,leafupdate,op);CHKERRQ(ierr);
1249563ffbabSMatthew G. Knepley   ierr = PetscLogEventEnd(PETSCSF_FetchAndOpBegin,sf,0,0,0);CHKERRQ(ierr);
125095fce210SBarry Smith   PetscFunctionReturn(0);
125195fce210SBarry Smith }
125295fce210SBarry Smith 
125395fce210SBarry Smith /*@C
125495fce210SBarry Smith    PetscSFFetchAndOpEnd - end operation started in matching call to PetscSFFetchAndOpBegin() to fetch values from roots and update atomically by applying operation using my leaf value
125595fce210SBarry Smith 
125695fce210SBarry Smith    Collective
125795fce210SBarry Smith 
125895fce210SBarry Smith    Input Arguments:
125995fce210SBarry Smith +  sf - star forest
126095fce210SBarry Smith .  unit - data type
126195fce210SBarry Smith .  leafdata - leaf values to use in reduction
126295fce210SBarry Smith -  op - operation to use for reduction
126395fce210SBarry Smith 
126495fce210SBarry Smith    Output Arguments:
126595fce210SBarry Smith +  rootdata - root values to be updated, input state is seen by first process to perform an update
126695fce210SBarry Smith -  leafupdate - state at each leaf's respective root immediately prior to my atomic update
126795fce210SBarry Smith 
126895fce210SBarry Smith    Level: advanced
126995fce210SBarry Smith 
127095fce210SBarry Smith .seealso: PetscSFComputeDegreeEnd(), PetscSFReduceEnd(), PetscSFSetGraph()
127195fce210SBarry Smith @*/
127295fce210SBarry Smith PetscErrorCode PetscSFFetchAndOpEnd(PetscSF sf,MPI_Datatype unit,void *rootdata,const void *leafdata,void *leafupdate,MPI_Op op)
127395fce210SBarry Smith {
127495fce210SBarry Smith   PetscErrorCode ierr;
127595fce210SBarry Smith 
127695fce210SBarry Smith   PetscFunctionBegin;
127795fce210SBarry Smith   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
127895fce210SBarry Smith   ierr = PetscSFSetUp(sf);CHKERRQ(ierr);
127929046d53SLisandro Dalcin   ierr = PetscLogEventBegin(PETSCSF_FetchAndOpEnd,sf,0,0,0);CHKERRQ(ierr);
128095fce210SBarry Smith   ierr = (*sf->ops->FetchAndOpEnd)(sf,unit,rootdata,leafdata,leafupdate,op);CHKERRQ(ierr);
1281563ffbabSMatthew G. Knepley   ierr = PetscLogEventEnd(PETSCSF_FetchAndOpEnd,sf,0,0,0);CHKERRQ(ierr);
128295fce210SBarry Smith   PetscFunctionReturn(0);
128395fce210SBarry Smith }
128495fce210SBarry Smith 
128595fce210SBarry Smith /*@C
128695fce210SBarry Smith    PetscSFGatherBegin - begin pointwise gather of all leaves into multi-roots, to be completed with PetscSFGatherEnd()
128795fce210SBarry Smith 
128895fce210SBarry Smith    Collective
128995fce210SBarry Smith 
129095fce210SBarry Smith    Input Arguments:
129195fce210SBarry Smith +  sf - star forest
129295fce210SBarry Smith .  unit - data type
129395fce210SBarry Smith -  leafdata - leaf data to gather to roots
129495fce210SBarry Smith 
129595fce210SBarry Smith    Output Argument:
129695fce210SBarry Smith .  multirootdata - root buffer to gather into, amount of space per root is equal to its degree
129795fce210SBarry Smith 
129895fce210SBarry Smith    Level: intermediate
129995fce210SBarry Smith 
130095fce210SBarry Smith .seealso: PetscSFComputeDegreeBegin(), PetscSFScatterBegin()
130195fce210SBarry Smith @*/
130295fce210SBarry Smith PetscErrorCode PetscSFGatherBegin(PetscSF sf,MPI_Datatype unit,const void *leafdata,void *multirootdata)
130395fce210SBarry Smith {
130495fce210SBarry Smith   PetscErrorCode ierr;
130595fce210SBarry Smith   PetscSF        multi;
130695fce210SBarry Smith 
130795fce210SBarry Smith   PetscFunctionBegin;
130895fce210SBarry Smith   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
130929046d53SLisandro Dalcin   ierr = PetscSFSetUp(sf);CHKERRQ(ierr);
131095fce210SBarry Smith   ierr = PetscSFGetMultiSF(sf,&multi);CHKERRQ(ierr);
13118bfbc91cSJed Brown   ierr = PetscSFReduceBegin(multi,unit,leafdata,multirootdata,MPIU_REPLACE);CHKERRQ(ierr);
131295fce210SBarry Smith   PetscFunctionReturn(0);
131395fce210SBarry Smith }
131495fce210SBarry Smith 
131595fce210SBarry Smith /*@C
131695fce210SBarry Smith    PetscSFGatherEnd - ends pointwise gather operation that was started with PetscSFGatherBegin()
131795fce210SBarry Smith 
131895fce210SBarry Smith    Collective
131995fce210SBarry Smith 
132095fce210SBarry Smith    Input Arguments:
132195fce210SBarry Smith +  sf - star forest
132295fce210SBarry Smith .  unit - data type
132395fce210SBarry Smith -  leafdata - leaf data to gather to roots
132495fce210SBarry Smith 
132595fce210SBarry Smith    Output Argument:
132695fce210SBarry Smith .  multirootdata - root buffer to gather into, amount of space per root is equal to its degree
132795fce210SBarry Smith 
132895fce210SBarry Smith    Level: intermediate
132995fce210SBarry Smith 
133095fce210SBarry Smith .seealso: PetscSFComputeDegreeEnd(), PetscSFScatterEnd()
133195fce210SBarry Smith @*/
133295fce210SBarry Smith PetscErrorCode PetscSFGatherEnd(PetscSF sf,MPI_Datatype unit,const void *leafdata,void *multirootdata)
133395fce210SBarry Smith {
133495fce210SBarry Smith   PetscErrorCode ierr;
133595fce210SBarry Smith   PetscSF        multi;
133695fce210SBarry Smith 
133795fce210SBarry Smith   PetscFunctionBegin;
133895fce210SBarry Smith   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
133995fce210SBarry Smith   ierr = PetscSFSetUp(sf);CHKERRQ(ierr);
134095fce210SBarry Smith   ierr = PetscSFGetMultiSF(sf,&multi);CHKERRQ(ierr);
13418bfbc91cSJed Brown   ierr = PetscSFReduceEnd(multi,unit,leafdata,multirootdata,MPIU_REPLACE);CHKERRQ(ierr);
134295fce210SBarry Smith   PetscFunctionReturn(0);
134395fce210SBarry Smith }
134495fce210SBarry Smith 
134595fce210SBarry Smith /*@C
134695fce210SBarry Smith    PetscSFScatterBegin - begin pointwise scatter operation from multi-roots to leaves, to be completed with PetscSFScatterEnd()
134795fce210SBarry Smith 
134895fce210SBarry Smith    Collective
134995fce210SBarry Smith 
135095fce210SBarry Smith    Input Arguments:
135195fce210SBarry Smith +  sf - star forest
135295fce210SBarry Smith .  unit - data type
135395fce210SBarry Smith -  multirootdata - root buffer to send to each leaf, one unit of data per leaf
135495fce210SBarry Smith 
135595fce210SBarry Smith    Output Argument:
135695fce210SBarry Smith .  leafdata - leaf data to be update with personal data from each respective root
135795fce210SBarry Smith 
135895fce210SBarry Smith    Level: intermediate
135995fce210SBarry Smith 
136095fce210SBarry Smith .seealso: PetscSFComputeDegreeBegin(), PetscSFScatterBegin()
136195fce210SBarry Smith @*/
136295fce210SBarry Smith PetscErrorCode PetscSFScatterBegin(PetscSF sf,MPI_Datatype unit,const void *multirootdata,void *leafdata)
136395fce210SBarry Smith {
136495fce210SBarry Smith   PetscErrorCode ierr;
136595fce210SBarry Smith   PetscSF        multi;
136695fce210SBarry Smith 
136795fce210SBarry Smith   PetscFunctionBegin;
136895fce210SBarry Smith   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
136995fce210SBarry Smith   ierr = PetscSFSetUp(sf);CHKERRQ(ierr);
137095fce210SBarry Smith   ierr = PetscSFGetMultiSF(sf,&multi);CHKERRQ(ierr);
137195fce210SBarry Smith   ierr = PetscSFBcastBegin(multi,unit,multirootdata,leafdata);CHKERRQ(ierr);
137295fce210SBarry Smith   PetscFunctionReturn(0);
137395fce210SBarry Smith }
137495fce210SBarry Smith 
137595fce210SBarry Smith /*@C
137695fce210SBarry Smith    PetscSFScatterEnd - ends pointwise scatter operation that was started with PetscSFScatterBegin()
137795fce210SBarry Smith 
137895fce210SBarry Smith    Collective
137995fce210SBarry Smith 
138095fce210SBarry Smith    Input Arguments:
138195fce210SBarry Smith +  sf - star forest
138295fce210SBarry Smith .  unit - data type
138395fce210SBarry Smith -  multirootdata - root buffer to send to each leaf, one unit of data per leaf
138495fce210SBarry Smith 
138595fce210SBarry Smith    Output Argument:
138695fce210SBarry Smith .  leafdata - leaf data to be update with personal data from each respective root
138795fce210SBarry Smith 
138895fce210SBarry Smith    Level: intermediate
138995fce210SBarry Smith 
139095fce210SBarry Smith .seealso: PetscSFComputeDegreeEnd(), PetscSFScatterEnd()
139195fce210SBarry Smith @*/
139295fce210SBarry Smith PetscErrorCode PetscSFScatterEnd(PetscSF sf,MPI_Datatype unit,const void *multirootdata,void *leafdata)
139395fce210SBarry Smith {
139495fce210SBarry Smith   PetscErrorCode ierr;
139595fce210SBarry Smith   PetscSF        multi;
139695fce210SBarry Smith 
139795fce210SBarry Smith   PetscFunctionBegin;
139895fce210SBarry Smith   PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1);
139995fce210SBarry Smith   ierr = PetscSFSetUp(sf);CHKERRQ(ierr);
140095fce210SBarry Smith   ierr = PetscSFGetMultiSF(sf,&multi);CHKERRQ(ierr);
140195fce210SBarry Smith   ierr = PetscSFBcastEnd(multi,unit,multirootdata,leafdata);CHKERRQ(ierr);
140295fce210SBarry Smith   PetscFunctionReturn(0);
140395fce210SBarry Smith }
1404a7b3aa13SAta Mesgarnejad 
1405a7b3aa13SAta Mesgarnejad /*@
1406a7b3aa13SAta Mesgarnejad   PetscSFCompose - Compose a new PetscSF equivalent to action to PetscSFs
1407a7b3aa13SAta Mesgarnejad 
1408a7b3aa13SAta Mesgarnejad   Input Parameters:
1409a7b3aa13SAta Mesgarnejad + sfA - The first PetscSF
1410a7b3aa13SAta Mesgarnejad - sfB - The second PetscSF
1411a7b3aa13SAta Mesgarnejad 
1412a7b3aa13SAta Mesgarnejad   Output Parameters:
1413a7b3aa13SAta Mesgarnejad . sfBA - equvalent PetscSF for applying A then B
1414a7b3aa13SAta Mesgarnejad 
1415a7b3aa13SAta Mesgarnejad   Level: developer
1416a7b3aa13SAta Mesgarnejad 
1417a7b3aa13SAta Mesgarnejad .seealso: PetscSF, PetscSFGetGraph(), PetscSFSetGraph()
1418a7b3aa13SAta Mesgarnejad @*/
1419a7b3aa13SAta Mesgarnejad PetscErrorCode PetscSFCompose(PetscSF sfA, PetscSF sfB, PetscSF *sfBA)
1420a7b3aa13SAta Mesgarnejad {
1421a7b3aa13SAta Mesgarnejad   MPI_Comm           comm;
1422a7b3aa13SAta Mesgarnejad   const PetscSFNode *remotePointsA, *remotePointsB;
1423a7b3aa13SAta Mesgarnejad   PetscSFNode       *remotePointsBA;
1424a7b3aa13SAta Mesgarnejad   const PetscInt    *localPointsA, *localPointsB;
1425a7b3aa13SAta Mesgarnejad   PetscInt           numRootsA, numLeavesA, numRootsB, numLeavesB;
1426a7b3aa13SAta Mesgarnejad   PetscErrorCode     ierr;
1427a7b3aa13SAta Mesgarnejad 
1428a7b3aa13SAta Mesgarnejad   PetscFunctionBegin;
1429a7b3aa13SAta Mesgarnejad   PetscValidHeaderSpecific(sfA, PETSCSF_CLASSID, 1);
143029046d53SLisandro Dalcin   PetscSFCheckGraphSet(sfA, 1);
143129046d53SLisandro Dalcin   PetscValidHeaderSpecific(sfB, PETSCSF_CLASSID, 2);
143229046d53SLisandro Dalcin   PetscSFCheckGraphSet(sfB, 2);
143329046d53SLisandro Dalcin   PetscValidPointer(sfBA, 3);
1434a7b3aa13SAta Mesgarnejad   ierr = PetscObjectGetComm((PetscObject) sfA, &comm);CHKERRQ(ierr);
1435a7b3aa13SAta Mesgarnejad   ierr = PetscSFGetGraph(sfA, &numRootsA, &numLeavesA, &localPointsA, &remotePointsA);CHKERRQ(ierr);
1436a7b3aa13SAta Mesgarnejad   ierr = PetscSFGetGraph(sfB, &numRootsB, &numLeavesB, &localPointsB, &remotePointsB);CHKERRQ(ierr);
1437a7b3aa13SAta Mesgarnejad   ierr = PetscMalloc1(numLeavesB, &remotePointsBA);CHKERRQ(ierr);
1438a7b3aa13SAta Mesgarnejad   ierr = PetscSFBcastBegin(sfB, MPIU_2INT, remotePointsA, remotePointsBA);CHKERRQ(ierr);
1439a7b3aa13SAta Mesgarnejad   ierr = PetscSFBcastEnd(sfB, MPIU_2INT, remotePointsA, remotePointsBA);CHKERRQ(ierr);
1440a7b3aa13SAta Mesgarnejad   ierr = PetscSFCreate(comm, sfBA);CHKERRQ(ierr);
1441a7b3aa13SAta Mesgarnejad   ierr = PetscSFSetGraph(*sfBA, numRootsA, numLeavesB, localPointsB, PETSC_COPY_VALUES, remotePointsBA, PETSC_OWN_POINTER);CHKERRQ(ierr);
1442a7b3aa13SAta Mesgarnejad   PetscFunctionReturn(0);
1443a7b3aa13SAta Mesgarnejad }
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