1af0996ceSBarry Smith #include <petsc/private/sfimpl.h> /*I "petscsf.h" I*/ 295fce210SBarry Smith #include <petscctable.h> 395fce210SBarry Smith 495fce210SBarry Smith #if defined(PETSC_USE_DEBUG) 595fce210SBarry Smith # define PetscSFCheckGraphSet(sf,arg) do { \ 695fce210SBarry Smith if (PetscUnlikely(!(sf)->graphset)) \ 795fce210SBarry Smith SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Must call PetscSFSetGraph() on argument %D \"%s\" before %s()",(arg),#sf,PETSC_FUNCTION_NAME); \ 895fce210SBarry Smith } while (0) 995fce210SBarry Smith #else 1095fce210SBarry Smith # define PetscSFCheckGraphSet(sf,arg) do {} while (0) 1195fce210SBarry Smith #endif 1295fce210SBarry Smith 1395fce210SBarry Smith const char *const PetscSFDuplicateOptions[] = {"CONFONLY","RANKS","GRAPH","PetscSFDuplicateOption","PETSCSF_DUPLICATE_",0}; 1495fce210SBarry Smith 158af6ec1cSBarry Smith /*@ 1695fce210SBarry Smith PetscSFCreate - create a star forest communication context 1795fce210SBarry Smith 18217044c2SLisandro Dalcin Collective on MPI_Comm 1995fce210SBarry Smith 2095fce210SBarry Smith Input Arguments: 2195fce210SBarry Smith . comm - communicator on which the star forest will operate 2295fce210SBarry Smith 2395fce210SBarry Smith Output Arguments: 2495fce210SBarry Smith . sf - new star forest context 2595fce210SBarry Smith 2695fce210SBarry Smith Level: intermediate 2795fce210SBarry Smith 2895fce210SBarry Smith .seealso: PetscSFSetGraph(), PetscSFDestroy() 2995fce210SBarry Smith @*/ 3095fce210SBarry Smith PetscErrorCode PetscSFCreate(MPI_Comm comm,PetscSF *sf) 3195fce210SBarry Smith { 3295fce210SBarry Smith PetscErrorCode ierr; 3395fce210SBarry Smith PetscSF b; 3495fce210SBarry Smith 3595fce210SBarry Smith PetscFunctionBegin; 3695fce210SBarry Smith PetscValidPointer(sf,2); 37607a6623SBarry Smith ierr = PetscSFInitializePackage();CHKERRQ(ierr); 3895fce210SBarry Smith 3973107ff1SLisandro Dalcin ierr = PetscHeaderCreate(b,PETSCSF_CLASSID,"PetscSF","Star Forest","PetscSF",comm,PetscSFDestroy,PetscSFView);CHKERRQ(ierr); 4095fce210SBarry Smith 4195fce210SBarry Smith b->nroots = -1; 4295fce210SBarry Smith b->nleaves = -1; 4329046d53SLisandro Dalcin b->minleaf = PETSC_MAX_INT; 4429046d53SLisandro Dalcin b->maxleaf = PETSC_MIN_INT; 4595fce210SBarry Smith b->nranks = -1; 4695fce210SBarry Smith b->rankorder = PETSC_TRUE; 4795fce210SBarry Smith b->ingroup = MPI_GROUP_NULL; 4895fce210SBarry Smith b->outgroup = MPI_GROUP_NULL; 4995fce210SBarry Smith b->graphset = PETSC_FALSE; 5095fce210SBarry Smith 5195fce210SBarry Smith *sf = b; 5295fce210SBarry Smith PetscFunctionReturn(0); 5395fce210SBarry Smith } 5495fce210SBarry Smith 5529046d53SLisandro Dalcin /*@ 5695fce210SBarry Smith PetscSFReset - Reset a star forest so that different sizes or neighbors can be used 5795fce210SBarry Smith 5895fce210SBarry Smith Collective 5995fce210SBarry Smith 6095fce210SBarry Smith Input Arguments: 6195fce210SBarry Smith . sf - star forest 6295fce210SBarry Smith 6395fce210SBarry Smith Level: advanced 6495fce210SBarry Smith 6595fce210SBarry Smith .seealso: PetscSFCreate(), PetscSFSetGraph(), PetscSFDestroy() 6695fce210SBarry Smith @*/ 6795fce210SBarry Smith PetscErrorCode PetscSFReset(PetscSF sf) 6895fce210SBarry Smith { 6995fce210SBarry Smith PetscErrorCode ierr; 7095fce210SBarry Smith 7195fce210SBarry Smith PetscFunctionBegin; 7295fce210SBarry Smith PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 7379715d56SJed Brown if (sf->ops->Reset) {ierr = (*sf->ops->Reset)(sf);CHKERRQ(ierr);} 7429046d53SLisandro Dalcin sf->nroots = -1; 7529046d53SLisandro Dalcin sf->nleaves = -1; 7629046d53SLisandro Dalcin sf->minleaf = PETSC_MAX_INT; 7729046d53SLisandro Dalcin sf->maxleaf = PETSC_MIN_INT; 7895fce210SBarry Smith sf->mine = NULL; 7995fce210SBarry Smith sf->remote = NULL; 8029046d53SLisandro Dalcin sf->graphset = PETSC_FALSE; 8129046d53SLisandro Dalcin ierr = PetscFree(sf->mine_alloc);CHKERRQ(ierr); 8295fce210SBarry Smith ierr = PetscFree(sf->remote_alloc);CHKERRQ(ierr); 8321c688dcSJed Brown sf->nranks = -1; 8429046d53SLisandro Dalcin ierr = PetscFree4(sf->ranks,sf->roffset,sf->rmine,sf->rremote);CHKERRQ(ierr); 8529046d53SLisandro Dalcin sf->degreeknown = PETSC_FALSE; 8695fce210SBarry Smith ierr = PetscFree(sf->degree);CHKERRQ(ierr); 8795fce210SBarry Smith if (sf->ingroup != MPI_GROUP_NULL) {ierr = MPI_Group_free(&sf->ingroup);CHKERRQ(ierr);} 8895fce210SBarry Smith if (sf->outgroup != MPI_GROUP_NULL) {ierr = MPI_Group_free(&sf->outgroup);CHKERRQ(ierr);} 8995fce210SBarry Smith ierr = PetscSFDestroy(&sf->multi);CHKERRQ(ierr); 9095fce210SBarry Smith sf->setupcalled = PETSC_FALSE; 9195fce210SBarry Smith PetscFunctionReturn(0); 9295fce210SBarry Smith } 9395fce210SBarry Smith 9495fce210SBarry Smith /*@C 9529046d53SLisandro Dalcin PetscSFSetType - Set the PetscSF communication implementation 9695fce210SBarry Smith 9795fce210SBarry Smith Collective on PetscSF 9895fce210SBarry Smith 9995fce210SBarry Smith Input Parameters: 10095fce210SBarry Smith + sf - the PetscSF context 10195fce210SBarry Smith - type - a known method 10295fce210SBarry Smith 10395fce210SBarry Smith Options Database Key: 10495fce210SBarry Smith . -sf_type <type> - Sets the method; use -help for a list 10595fce210SBarry Smith of available methods (for instance, window, pt2pt, neighbor) 10695fce210SBarry Smith 10795fce210SBarry Smith Notes: 10895fce210SBarry Smith See "include/petscsf.h" for available methods (for instance) 10995fce210SBarry Smith + PETSCSFWINDOW - MPI-2/3 one-sided 11095fce210SBarry Smith - PETSCSFBASIC - basic implementation using MPI-1 two-sided 11195fce210SBarry Smith 11295fce210SBarry Smith Level: intermediate 11395fce210SBarry Smith 11495fce210SBarry Smith .keywords: PetscSF, set, type 11595fce210SBarry Smith 11695fce210SBarry Smith .seealso: PetscSFType, PetscSFCreate() 11795fce210SBarry Smith @*/ 11895fce210SBarry Smith PetscErrorCode PetscSFSetType(PetscSF sf,PetscSFType type) 11995fce210SBarry Smith { 12095fce210SBarry Smith PetscErrorCode ierr,(*r)(PetscSF); 12195fce210SBarry Smith PetscBool match; 12295fce210SBarry Smith 12395fce210SBarry Smith PetscFunctionBegin; 12495fce210SBarry Smith PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 12595fce210SBarry Smith PetscValidCharPointer(type,2); 12695fce210SBarry Smith 12795fce210SBarry Smith ierr = PetscObjectTypeCompare((PetscObject)sf,type,&match);CHKERRQ(ierr); 12895fce210SBarry Smith if (match) PetscFunctionReturn(0); 12995fce210SBarry Smith 130adc40e5bSBarry Smith ierr = PetscFunctionListFind(PetscSFList,type,&r);CHKERRQ(ierr); 13195fce210SBarry Smith if (!r) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_UNKNOWN_TYPE,"Unable to find requested PetscSF type %s",type); 13229046d53SLisandro Dalcin /* Destroy the previous PetscSF implementation context */ 13329046d53SLisandro Dalcin if (sf->ops->Destroy) {ierr = (*(sf)->ops->Destroy)(sf);CHKERRQ(ierr);} 13495fce210SBarry Smith ierr = PetscMemzero(sf->ops,sizeof(*sf->ops));CHKERRQ(ierr); 13595fce210SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)sf,type);CHKERRQ(ierr); 13695fce210SBarry Smith ierr = (*r)(sf);CHKERRQ(ierr); 13795fce210SBarry Smith PetscFunctionReturn(0); 13895fce210SBarry Smith } 13995fce210SBarry Smith 14029046d53SLisandro Dalcin /*@C 14129046d53SLisandro Dalcin PetscSFGetType - Get the PetscSF communication implementation 14229046d53SLisandro Dalcin 14329046d53SLisandro Dalcin Not Collective 14429046d53SLisandro Dalcin 14529046d53SLisandro Dalcin Input Parameter: 14629046d53SLisandro Dalcin . sf - the PetscSF context 14729046d53SLisandro Dalcin 14829046d53SLisandro Dalcin Output Parameter: 14929046d53SLisandro Dalcin . type - the PetscSF type name 15029046d53SLisandro Dalcin 15129046d53SLisandro Dalcin Level: intermediate 15229046d53SLisandro Dalcin 15329046d53SLisandro Dalcin .keywords: PetscSF, get, type 15429046d53SLisandro Dalcin .seealso: PetscSFSetType(), PetscSFCreate() 15529046d53SLisandro Dalcin @*/ 15629046d53SLisandro Dalcin PetscErrorCode PetscSFGetType(PetscSF sf, PetscSFType *type) 15729046d53SLisandro Dalcin { 15829046d53SLisandro Dalcin PetscFunctionBegin; 15929046d53SLisandro Dalcin PetscValidHeaderSpecific(sf, PETSCSF_CLASSID,1); 16029046d53SLisandro Dalcin PetscValidPointer(type,2); 16129046d53SLisandro Dalcin *type = ((PetscObject)sf)->type_name; 16229046d53SLisandro Dalcin PetscFunctionReturn(0); 16329046d53SLisandro Dalcin } 16429046d53SLisandro Dalcin 165d36d33e4SMatthew G. Knepley /*@ 16695fce210SBarry Smith PetscSFDestroy - destroy star forest 16795fce210SBarry Smith 16895fce210SBarry Smith Collective 16995fce210SBarry Smith 17095fce210SBarry Smith Input Arguments: 17195fce210SBarry Smith . sf - address of star forest 17295fce210SBarry Smith 17395fce210SBarry Smith Level: intermediate 17495fce210SBarry Smith 17595fce210SBarry Smith .seealso: PetscSFCreate(), PetscSFReset() 17695fce210SBarry Smith @*/ 17795fce210SBarry Smith PetscErrorCode PetscSFDestroy(PetscSF *sf) 17895fce210SBarry Smith { 17995fce210SBarry Smith PetscErrorCode ierr; 18095fce210SBarry Smith 18195fce210SBarry Smith PetscFunctionBegin; 18295fce210SBarry Smith if (!*sf) PetscFunctionReturn(0); 18395fce210SBarry Smith PetscValidHeaderSpecific((*sf),PETSCSF_CLASSID,1); 18429046d53SLisandro Dalcin if (--((PetscObject)(*sf))->refct > 0) {*sf = NULL; PetscFunctionReturn(0);} 18595fce210SBarry Smith ierr = PetscSFReset(*sf);CHKERRQ(ierr); 18695fce210SBarry Smith if ((*sf)->ops->Destroy) {ierr = (*(*sf)->ops->Destroy)(*sf);CHKERRQ(ierr);} 18795fce210SBarry Smith ierr = PetscHeaderDestroy(sf);CHKERRQ(ierr); 18895fce210SBarry Smith PetscFunctionReturn(0); 18995fce210SBarry Smith } 19095fce210SBarry Smith 19195fce210SBarry Smith /*@ 19295fce210SBarry Smith PetscSFSetUp - set up communication structures 19395fce210SBarry Smith 19495fce210SBarry Smith Collective 19595fce210SBarry Smith 19695fce210SBarry Smith Input Arguments: 19795fce210SBarry Smith . sf - star forest communication object 19895fce210SBarry Smith 19995fce210SBarry Smith Level: beginner 20095fce210SBarry Smith 20195fce210SBarry Smith .seealso: PetscSFSetFromOptions(), PetscSFSetType() 20295fce210SBarry Smith @*/ 20395fce210SBarry Smith PetscErrorCode PetscSFSetUp(PetscSF sf) 20495fce210SBarry Smith { 20595fce210SBarry Smith PetscErrorCode ierr; 20695fce210SBarry Smith 20795fce210SBarry Smith PetscFunctionBegin; 20829046d53SLisandro Dalcin PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 20929046d53SLisandro Dalcin PetscSFCheckGraphSet(sf,1); 21095fce210SBarry Smith if (sf->setupcalled) PetscFunctionReturn(0); 21195fce210SBarry Smith if (!((PetscObject)sf)->type_name) {ierr = PetscSFSetType(sf,PETSCSFBASIC);CHKERRQ(ierr);} 21229046d53SLisandro Dalcin ierr = PetscLogEventBegin(PETSCSF_SetUp,sf,0,0,0);CHKERRQ(ierr); 21395fce210SBarry Smith if (sf->ops->SetUp) {ierr = (*sf->ops->SetUp)(sf);CHKERRQ(ierr);} 21429046d53SLisandro Dalcin ierr = PetscLogEventEnd(PETSCSF_SetUp,sf,0,0,0);CHKERRQ(ierr); 21595fce210SBarry Smith sf->setupcalled = PETSC_TRUE; 21695fce210SBarry Smith PetscFunctionReturn(0); 21795fce210SBarry Smith } 21895fce210SBarry Smith 2198af6ec1cSBarry Smith /*@ 22095fce210SBarry Smith PetscSFSetFromOptions - set PetscSF options using the options database 22195fce210SBarry Smith 22295fce210SBarry Smith Logically Collective 22395fce210SBarry Smith 22495fce210SBarry Smith Input Arguments: 22595fce210SBarry Smith . sf - star forest 22695fce210SBarry Smith 22795fce210SBarry Smith Options Database Keys: 22860263706SJed Brown + -sf_type - implementation type, see PetscSFSetType() 22960263706SJed Brown - -sf_rank_order - sort composite points for gathers and scatters in rank order, gathers are non-deterministic otherwise 23095fce210SBarry Smith 23195fce210SBarry Smith Level: intermediate 23295fce210SBarry Smith 23395fce210SBarry Smith .keywords: KSP, set, from, options, database 23495fce210SBarry Smith 23595fce210SBarry Smith .seealso: PetscSFWindowSetSyncType() 23695fce210SBarry Smith @*/ 23795fce210SBarry Smith PetscErrorCode PetscSFSetFromOptions(PetscSF sf) 23895fce210SBarry Smith { 23995fce210SBarry Smith PetscSFType deft; 24095fce210SBarry Smith char type[256]; 24195fce210SBarry Smith PetscErrorCode ierr; 24295fce210SBarry Smith PetscBool flg; 24395fce210SBarry Smith 24495fce210SBarry Smith PetscFunctionBegin; 24595fce210SBarry Smith PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 24695fce210SBarry Smith ierr = PetscObjectOptionsBegin((PetscObject)sf);CHKERRQ(ierr); 24795fce210SBarry Smith deft = ((PetscObject)sf)->type_name ? ((PetscObject)sf)->type_name : PETSCSFBASIC; 24829046d53SLisandro Dalcin ierr = PetscOptionsFList("-sf_type","PetscSF implementation type","PetscSFSetType",PetscSFList,deft,type,sizeof(type),&flg);CHKERRQ(ierr); 24995fce210SBarry Smith ierr = PetscSFSetType(sf,flg ? type : deft);CHKERRQ(ierr); 25095fce210SBarry Smith ierr = PetscOptionsBool("-sf_rank_order","sort composite points for gathers and scatters in rank order, gathers are non-deterministic otherwise","PetscSFSetRankOrder",sf->rankorder,&sf->rankorder,NULL);CHKERRQ(ierr); 251e55864a3SBarry Smith if (sf->ops->SetFromOptions) {ierr = (*sf->ops->SetFromOptions)(PetscOptionsObject,sf);CHKERRQ(ierr);} 25295fce210SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 25395fce210SBarry Smith PetscFunctionReturn(0); 25495fce210SBarry Smith } 25595fce210SBarry Smith 25629046d53SLisandro Dalcin /*@ 25795fce210SBarry Smith PetscSFSetRankOrder - sort multi-points for gathers and scatters by rank order 25895fce210SBarry Smith 25995fce210SBarry Smith Logically Collective 26095fce210SBarry Smith 26195fce210SBarry Smith Input Arguments: 26295fce210SBarry Smith + sf - star forest 26395fce210SBarry Smith - flg - PETSC_TRUE to sort, PETSC_FALSE to skip sorting (lower setup cost, but non-deterministic) 26495fce210SBarry Smith 26595fce210SBarry Smith Level: advanced 26695fce210SBarry Smith 26795fce210SBarry Smith .seealso: PetscSFGatherBegin(), PetscSFScatterBegin() 26895fce210SBarry Smith @*/ 26995fce210SBarry Smith PetscErrorCode PetscSFSetRankOrder(PetscSF sf,PetscBool flg) 27095fce210SBarry Smith { 27195fce210SBarry Smith 27295fce210SBarry Smith PetscFunctionBegin; 27395fce210SBarry Smith PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 27495fce210SBarry Smith PetscValidLogicalCollectiveBool(sf,flg,2); 27595fce210SBarry Smith if (sf->multi) SETERRQ(PetscObjectComm((PetscObject)sf),PETSC_ERR_ARG_WRONGSTATE,"Rank ordering must be set before first call to PetscSFGatherBegin() or PetscSFScatterBegin()"); 27695fce210SBarry Smith sf->rankorder = flg; 27795fce210SBarry Smith PetscFunctionReturn(0); 27895fce210SBarry Smith } 27995fce210SBarry Smith 2808af6ec1cSBarry Smith /*@ 28195fce210SBarry Smith PetscSFSetGraph - Set a parallel star forest 28295fce210SBarry Smith 28395fce210SBarry Smith Collective 28495fce210SBarry Smith 28595fce210SBarry Smith Input Arguments: 28695fce210SBarry Smith + sf - star forest 28795fce210SBarry Smith . nroots - number of root vertices on the current process (these are possible targets for other process to attach leaves) 28895fce210SBarry Smith . nleaves - number of leaf vertices on the current process, each of these references a root on any process 28995fce210SBarry Smith . ilocal - locations of leaves in leafdata buffers, pass NULL for contiguous storage 29095fce210SBarry Smith . localmode - copy mode for ilocal 29195fce210SBarry Smith . iremote - remote locations of root vertices for each leaf on the current process 29295fce210SBarry Smith - remotemode - copy mode for iremote 29395fce210SBarry Smith 29495fce210SBarry Smith Level: intermediate 29595fce210SBarry Smith 29695452b02SPatrick Sanan Notes: 29795452b02SPatrick Sanan In Fortran you must use PETSC_COPY_VALUES for localmode and remotemode 29838ab3f8aSBarry Smith 2992ad1e87fSLisandro Dalcin Developers Note: Local indices which are the identity permutation in the range [0,nleaves) are discarded as they 3002ad1e87fSLisandro Dalcin encode contiguous storage. In such case, if localmode is PETSC_OWN_POINTER, the memory is deallocated as it is not 3012ad1e87fSLisandro Dalcin needed 3022ad1e87fSLisandro Dalcin 30395fce210SBarry Smith .seealso: PetscSFCreate(), PetscSFView(), PetscSFGetGraph() 30495fce210SBarry Smith @*/ 30595fce210SBarry Smith PetscErrorCode PetscSFSetGraph(PetscSF sf,PetscInt nroots,PetscInt nleaves,const PetscInt *ilocal,PetscCopyMode localmode,const PetscSFNode *iremote,PetscCopyMode remotemode) 30695fce210SBarry Smith { 30795fce210SBarry Smith PetscErrorCode ierr; 30895fce210SBarry Smith 30995fce210SBarry Smith PetscFunctionBegin; 31095fce210SBarry Smith PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 31129046d53SLisandro Dalcin if (nleaves > 0 && ilocal) PetscValidIntPointer(ilocal,4); 31229046d53SLisandro Dalcin if (nleaves > 0) PetscValidPointer(iremote,6); 31329046d53SLisandro Dalcin if (nroots < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"nroots %D, cannot be negative",nroots); 31495fce210SBarry Smith if (nleaves < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"nleaves %D, cannot be negative",nleaves); 31529046d53SLisandro Dalcin 31695fce210SBarry Smith ierr = PetscSFReset(sf);CHKERRQ(ierr); 31729046d53SLisandro Dalcin ierr = PetscLogEventBegin(PETSCSF_SetGraph,sf,0,0,0);CHKERRQ(ierr); 31829046d53SLisandro Dalcin 31995fce210SBarry Smith sf->nroots = nroots; 32095fce210SBarry Smith sf->nleaves = nleaves; 32129046d53SLisandro Dalcin 32229046d53SLisandro Dalcin if (nleaves && ilocal) { 32321c688dcSJed Brown PetscInt i; 32429046d53SLisandro Dalcin PetscInt minleaf = PETSC_MAX_INT; 32529046d53SLisandro Dalcin PetscInt maxleaf = PETSC_MIN_INT; 3262ad1e87fSLisandro Dalcin int contiguous = 1; 32729046d53SLisandro Dalcin for (i=0; i<nleaves; i++) { 32829046d53SLisandro Dalcin minleaf = PetscMin(minleaf,ilocal[i]); 32929046d53SLisandro Dalcin maxleaf = PetscMax(maxleaf,ilocal[i]); 3302ad1e87fSLisandro Dalcin contiguous &= (ilocal[i] == i); 33129046d53SLisandro Dalcin } 33229046d53SLisandro Dalcin sf->minleaf = minleaf; 33329046d53SLisandro Dalcin sf->maxleaf = maxleaf; 3342ad1e87fSLisandro Dalcin if (contiguous) { 3352ad1e87fSLisandro Dalcin if (localmode == PETSC_OWN_POINTER) { 3362ad1e87fSLisandro Dalcin ierr = PetscFree(ilocal);CHKERRQ(ierr); 3372ad1e87fSLisandro Dalcin } 3382ad1e87fSLisandro Dalcin ilocal = NULL; 3392ad1e87fSLisandro Dalcin } 34029046d53SLisandro Dalcin } else { 34129046d53SLisandro Dalcin sf->minleaf = 0; 34229046d53SLisandro Dalcin sf->maxleaf = nleaves - 1; 34329046d53SLisandro Dalcin } 34429046d53SLisandro Dalcin 34529046d53SLisandro Dalcin if (ilocal) { 34695fce210SBarry Smith switch (localmode) { 34795fce210SBarry Smith case PETSC_COPY_VALUES: 348785e854fSJed Brown ierr = PetscMalloc1(nleaves,&sf->mine_alloc);CHKERRQ(ierr); 34929046d53SLisandro Dalcin ierr = PetscMemcpy(sf->mine_alloc,ilocal,nleaves*sizeof(*ilocal));CHKERRQ(ierr); 35095fce210SBarry Smith sf->mine = sf->mine_alloc; 35195fce210SBarry Smith break; 35295fce210SBarry Smith case PETSC_OWN_POINTER: 35395fce210SBarry Smith sf->mine_alloc = (PetscInt*)ilocal; 35495fce210SBarry Smith sf->mine = sf->mine_alloc; 35595fce210SBarry Smith break; 35695fce210SBarry Smith case PETSC_USE_POINTER: 35729046d53SLisandro Dalcin sf->mine_alloc = NULL; 35895fce210SBarry Smith sf->mine = (PetscInt*)ilocal; 35995fce210SBarry Smith break; 36095fce210SBarry Smith default: SETERRQ(PetscObjectComm((PetscObject)sf),PETSC_ERR_ARG_OUTOFRANGE,"Unknown localmode"); 36195fce210SBarry Smith } 36295fce210SBarry Smith } 36329046d53SLisandro Dalcin 36495fce210SBarry Smith switch (remotemode) { 36595fce210SBarry Smith case PETSC_COPY_VALUES: 366785e854fSJed Brown ierr = PetscMalloc1(nleaves,&sf->remote_alloc);CHKERRQ(ierr); 36729046d53SLisandro Dalcin ierr = PetscMemcpy(sf->remote_alloc,iremote,nleaves*sizeof(*iremote));CHKERRQ(ierr); 36895fce210SBarry Smith sf->remote = sf->remote_alloc; 36995fce210SBarry Smith break; 37095fce210SBarry Smith case PETSC_OWN_POINTER: 37195fce210SBarry Smith sf->remote_alloc = (PetscSFNode*)iremote; 37295fce210SBarry Smith sf->remote = sf->remote_alloc; 37395fce210SBarry Smith break; 37495fce210SBarry Smith case PETSC_USE_POINTER: 37529046d53SLisandro Dalcin sf->remote_alloc = NULL; 37695fce210SBarry Smith sf->remote = (PetscSFNode*)iremote; 37795fce210SBarry Smith break; 37895fce210SBarry Smith default: SETERRQ(PetscObjectComm((PetscObject)sf),PETSC_ERR_ARG_OUTOFRANGE,"Unknown remotemode"); 37995fce210SBarry Smith } 38095fce210SBarry Smith 381563ffbabSMatthew G. Knepley ierr = PetscLogEventEnd(PETSCSF_SetGraph,sf,0,0,0);CHKERRQ(ierr); 38229046d53SLisandro Dalcin sf->graphset = PETSC_TRUE; 38395fce210SBarry Smith PetscFunctionReturn(0); 38495fce210SBarry Smith } 38595fce210SBarry Smith 38629046d53SLisandro Dalcin /*@ 38795fce210SBarry Smith PetscSFCreateInverseSF - given a PetscSF in which all vertices have degree 1, creates the inverse map 38895fce210SBarry Smith 38995fce210SBarry Smith Collective 39095fce210SBarry Smith 39195fce210SBarry Smith Input Arguments: 39295fce210SBarry Smith . sf - star forest to invert 39395fce210SBarry Smith 39495fce210SBarry Smith Output Arguments: 39595fce210SBarry Smith . isf - inverse of sf 39695fce210SBarry Smith 39795fce210SBarry Smith Level: advanced 39895fce210SBarry Smith 39995fce210SBarry Smith Notes: 40095fce210SBarry Smith All roots must have degree 1. 40195fce210SBarry Smith 40295fce210SBarry Smith The local space may be a permutation, but cannot be sparse. 40395fce210SBarry Smith 40495fce210SBarry Smith .seealso: PetscSFSetGraph() 40595fce210SBarry Smith @*/ 40695fce210SBarry Smith PetscErrorCode PetscSFCreateInverseSF(PetscSF sf,PetscSF *isf) 40795fce210SBarry Smith { 40895fce210SBarry Smith PetscErrorCode ierr; 40995fce210SBarry Smith PetscMPIInt rank; 41095fce210SBarry Smith PetscInt i,nroots,nleaves,maxlocal,count,*newilocal; 41195fce210SBarry Smith const PetscInt *ilocal; 41295fce210SBarry Smith PetscSFNode *roots,*leaves; 41395fce210SBarry Smith 41495fce210SBarry Smith PetscFunctionBegin; 41529046d53SLisandro Dalcin PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 41629046d53SLisandro Dalcin PetscSFCheckGraphSet(sf,1); 41729046d53SLisandro Dalcin PetscValidPointer(isf,2); 41829046d53SLisandro Dalcin 41995fce210SBarry Smith ierr = PetscSFGetGraph(sf,&nroots,&nleaves,&ilocal,NULL);CHKERRQ(ierr); 42029046d53SLisandro Dalcin maxlocal = sf->maxleaf+1; /* TODO: We should use PetscSFGetLeafRange() */ 42129046d53SLisandro Dalcin 42229046d53SLisandro Dalcin ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)sf),&rank);CHKERRQ(ierr); 423ae9aee6dSMatthew G. Knepley ierr = PetscMalloc2(nroots,&roots,maxlocal,&leaves);CHKERRQ(ierr); 424ae9aee6dSMatthew G. Knepley for (i=0; i<maxlocal; i++) { 42595fce210SBarry Smith leaves[i].rank = rank; 42695fce210SBarry Smith leaves[i].index = i; 42795fce210SBarry Smith } 42895fce210SBarry Smith for (i=0; i <nroots; i++) { 42995fce210SBarry Smith roots[i].rank = -1; 43095fce210SBarry Smith roots[i].index = -1; 43195fce210SBarry Smith } 4328bfbc91cSJed Brown ierr = PetscSFReduceBegin(sf,MPIU_2INT,leaves,roots,MPIU_REPLACE);CHKERRQ(ierr); 4338bfbc91cSJed Brown ierr = PetscSFReduceEnd(sf,MPIU_2INT,leaves,roots,MPIU_REPLACE);CHKERRQ(ierr); 43495fce210SBarry Smith 43595fce210SBarry Smith /* Check whether our leaves are sparse */ 43695fce210SBarry Smith for (i=0,count=0; i<nroots; i++) if (roots[i].rank >= 0) count++; 43795fce210SBarry Smith if (count == nroots) newilocal = NULL; 43895fce210SBarry Smith else { /* Index for sparse leaves and compact "roots" array (which is to become our leaves). */ 439785e854fSJed Brown ierr = PetscMalloc1(count,&newilocal);CHKERRQ(ierr); 44095fce210SBarry Smith for (i=0,count=0; i<nroots; i++) { 44195fce210SBarry Smith if (roots[i].rank >= 0) { 44295fce210SBarry Smith newilocal[count] = i; 44395fce210SBarry Smith roots[count].rank = roots[i].rank; 44495fce210SBarry Smith roots[count].index = roots[i].index; 44595fce210SBarry Smith count++; 44695fce210SBarry Smith } 44795fce210SBarry Smith } 44895fce210SBarry Smith } 44995fce210SBarry Smith 45095fce210SBarry Smith ierr = PetscSFDuplicate(sf,PETSCSF_DUPLICATE_CONFONLY,isf);CHKERRQ(ierr); 45195fce210SBarry Smith ierr = PetscSFSetGraph(*isf,maxlocal,count,newilocal,PETSC_OWN_POINTER,roots,PETSC_COPY_VALUES);CHKERRQ(ierr); 45295fce210SBarry Smith ierr = PetscFree2(roots,leaves);CHKERRQ(ierr); 45395fce210SBarry Smith PetscFunctionReturn(0); 45495fce210SBarry Smith } 45595fce210SBarry Smith 45695fce210SBarry Smith /*@ 45795fce210SBarry Smith PetscSFDuplicate - duplicate a PetscSF, optionally preserving rank connectivity and graph 45895fce210SBarry Smith 45995fce210SBarry Smith Collective 46095fce210SBarry Smith 46195fce210SBarry Smith Input Arguments: 46295fce210SBarry Smith + sf - communication object to duplicate 46395fce210SBarry Smith - opt - PETSCSF_DUPLICATE_CONFONLY, PETSCSF_DUPLICATE_RANKS, or PETSCSF_DUPLICATE_GRAPH (see PetscSFDuplicateOption) 46495fce210SBarry Smith 46595fce210SBarry Smith Output Arguments: 46695fce210SBarry Smith . newsf - new communication object 46795fce210SBarry Smith 46895fce210SBarry Smith Level: beginner 46995fce210SBarry Smith 47095fce210SBarry Smith .seealso: PetscSFCreate(), PetscSFSetType(), PetscSFSetGraph() 47195fce210SBarry Smith @*/ 47295fce210SBarry Smith PetscErrorCode PetscSFDuplicate(PetscSF sf,PetscSFDuplicateOption opt,PetscSF *newsf) 47395fce210SBarry Smith { 47429046d53SLisandro Dalcin PetscSFType type; 47595fce210SBarry Smith PetscErrorCode ierr; 47695fce210SBarry Smith 47795fce210SBarry Smith PetscFunctionBegin; 47829046d53SLisandro Dalcin PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 47929046d53SLisandro Dalcin PetscValidLogicalCollectiveEnum(sf,opt,2); 48029046d53SLisandro Dalcin PetscValidPointer(newsf,3); 48195fce210SBarry Smith ierr = PetscSFCreate(PetscObjectComm((PetscObject)sf),newsf);CHKERRQ(ierr); 48229046d53SLisandro Dalcin ierr = PetscSFGetType(sf,&type);CHKERRQ(ierr); 48329046d53SLisandro Dalcin if (type) {ierr = PetscSFSetType(*newsf,type);CHKERRQ(ierr);} 48495fce210SBarry Smith if (opt == PETSCSF_DUPLICATE_GRAPH) { 48595fce210SBarry Smith PetscInt nroots,nleaves; 48695fce210SBarry Smith const PetscInt *ilocal; 48795fce210SBarry Smith const PetscSFNode *iremote; 48829046d53SLisandro Dalcin PetscSFCheckGraphSet(sf,1); 48995fce210SBarry Smith ierr = PetscSFGetGraph(sf,&nroots,&nleaves,&ilocal,&iremote);CHKERRQ(ierr); 49095fce210SBarry Smith ierr = PetscSFSetGraph(*newsf,nroots,nleaves,ilocal,PETSC_COPY_VALUES,iremote,PETSC_COPY_VALUES);CHKERRQ(ierr); 49195fce210SBarry Smith } 49229046d53SLisandro Dalcin if (sf->ops->Duplicate) {ierr = (*sf->ops->Duplicate)(sf,opt,*newsf);CHKERRQ(ierr);} 49395fce210SBarry Smith PetscFunctionReturn(0); 49495fce210SBarry Smith } 49595fce210SBarry Smith 49695fce210SBarry Smith /*@C 49795fce210SBarry Smith PetscSFGetGraph - Get the graph specifying a parallel star forest 49895fce210SBarry Smith 49995fce210SBarry Smith Not Collective 50095fce210SBarry Smith 50195fce210SBarry Smith Input Arguments: 50295fce210SBarry Smith . sf - star forest 50395fce210SBarry Smith 50495fce210SBarry Smith Output Arguments: 50595fce210SBarry Smith + nroots - number of root vertices on the current process (these are possible targets for other process to attach leaves) 50695fce210SBarry Smith . nleaves - number of leaf vertices on the current process, each of these references a root on any process 50795fce210SBarry Smith . ilocal - locations of leaves in leafdata buffers 50895fce210SBarry Smith - iremote - remote locations of root vertices for each leaf on the current process 50995fce210SBarry Smith 510373e0d91SLisandro Dalcin Notes: 511373e0d91SLisandro Dalcin We are not currently requiring that the graph is set, thus returning nroots=-1 if it has not been set yet 512373e0d91SLisandro Dalcin 51395fce210SBarry Smith Level: intermediate 51495fce210SBarry Smith 51595fce210SBarry Smith .seealso: PetscSFCreate(), PetscSFView(), PetscSFSetGraph() 51695fce210SBarry Smith @*/ 51795fce210SBarry Smith PetscErrorCode PetscSFGetGraph(PetscSF sf,PetscInt *nroots,PetscInt *nleaves,const PetscInt **ilocal,const PetscSFNode **iremote) 51895fce210SBarry Smith { 51995fce210SBarry Smith 52095fce210SBarry Smith PetscFunctionBegin; 52195fce210SBarry Smith PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 52295fce210SBarry Smith if (nroots) *nroots = sf->nroots; 52395fce210SBarry Smith if (nleaves) *nleaves = sf->nleaves; 52495fce210SBarry Smith if (ilocal) *ilocal = sf->mine; 52595fce210SBarry Smith if (iremote) *iremote = sf->remote; 52695fce210SBarry Smith PetscFunctionReturn(0); 52795fce210SBarry Smith } 52895fce210SBarry Smith 52929046d53SLisandro Dalcin /*@ 53095fce210SBarry Smith PetscSFGetLeafRange - Get the active leaf ranges 53195fce210SBarry Smith 53295fce210SBarry Smith Not Collective 53395fce210SBarry Smith 53495fce210SBarry Smith Input Arguments: 53595fce210SBarry Smith . sf - star forest 53695fce210SBarry Smith 53795fce210SBarry Smith Output Arguments: 53895fce210SBarry Smith + minleaf - minimum active leaf on this process 53995fce210SBarry Smith - maxleaf - maximum active leaf on this process 54095fce210SBarry Smith 54195fce210SBarry Smith Level: developer 54295fce210SBarry Smith 54395fce210SBarry Smith .seealso: PetscSFCreate(), PetscSFView(), PetscSFSetGraph(), PetscSFGetGraph() 54495fce210SBarry Smith @*/ 54595fce210SBarry Smith PetscErrorCode PetscSFGetLeafRange(PetscSF sf,PetscInt *minleaf,PetscInt *maxleaf) 54695fce210SBarry Smith { 54795fce210SBarry Smith 54895fce210SBarry Smith PetscFunctionBegin; 54995fce210SBarry Smith PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 55029046d53SLisandro Dalcin PetscSFCheckGraphSet(sf,1); 55195fce210SBarry Smith if (minleaf) *minleaf = sf->minleaf; 55295fce210SBarry Smith if (maxleaf) *maxleaf = sf->maxleaf; 55395fce210SBarry Smith PetscFunctionReturn(0); 55495fce210SBarry Smith } 55595fce210SBarry Smith 55695fce210SBarry Smith /*@C 55795fce210SBarry Smith PetscSFView - view a star forest 55895fce210SBarry Smith 55995fce210SBarry Smith Collective 56095fce210SBarry Smith 56195fce210SBarry Smith Input Arguments: 56295fce210SBarry Smith + sf - star forest 56395fce210SBarry Smith - viewer - viewer to display graph, for example PETSC_VIEWER_STDOUT_WORLD 56495fce210SBarry Smith 56595fce210SBarry Smith Level: beginner 56695fce210SBarry Smith 56795fce210SBarry Smith .seealso: PetscSFCreate(), PetscSFSetGraph() 56895fce210SBarry Smith @*/ 56995fce210SBarry Smith PetscErrorCode PetscSFView(PetscSF sf,PetscViewer viewer) 57095fce210SBarry Smith { 57195fce210SBarry Smith PetscErrorCode ierr; 57295fce210SBarry Smith PetscBool iascii; 57395fce210SBarry Smith PetscViewerFormat format; 57495fce210SBarry Smith 57595fce210SBarry Smith PetscFunctionBegin; 57695fce210SBarry Smith PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 57795fce210SBarry Smith if (!viewer) {ierr = PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject)sf),&viewer);CHKERRQ(ierr);} 57895fce210SBarry Smith PetscValidHeaderSpecific(viewer,PETSC_VIEWER_CLASSID,2); 57995fce210SBarry Smith PetscCheckSameComm(sf,1,viewer,2); 58080153354SVaclav Hapla if (sf->graphset) {ierr = PetscSFSetUp(sf);CHKERRQ(ierr);} 58195fce210SBarry Smith ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 58295fce210SBarry Smith if (iascii) { 58395fce210SBarry Smith PetscMPIInt rank; 58481bfa7aaSJed Brown PetscInt ii,i,j; 58595fce210SBarry Smith 586dae58748SBarry Smith ierr = PetscObjectPrintClassNamePrefixType((PetscObject)sf,viewer);CHKERRQ(ierr); 58795fce210SBarry Smith ierr = PetscViewerASCIIPushTab(viewer);CHKERRQ(ierr); 58895fce210SBarry Smith if (sf->ops->View) {ierr = (*sf->ops->View)(sf,viewer);CHKERRQ(ierr);} 58980153354SVaclav Hapla if (!sf->graphset) { 59080153354SVaclav Hapla ierr = PetscViewerASCIIPrintf(viewer,"PetscSFSetGraph() has not been called yet\n");CHKERRQ(ierr); 59180153354SVaclav Hapla ierr = PetscViewerASCIIPopTab(viewer);CHKERRQ(ierr); 59280153354SVaclav Hapla PetscFunctionReturn(0); 59380153354SVaclav Hapla } 59495fce210SBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)sf),&rank);CHKERRQ(ierr); 5951575c14dSBarry Smith ierr = PetscViewerASCIIPushSynchronized(viewer);CHKERRQ(ierr); 59695fce210SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Number of roots=%D, leaves=%D, remote ranks=%D\n",rank,sf->nroots,sf->nleaves,sf->nranks);CHKERRQ(ierr); 59795fce210SBarry Smith for (i=0; i<sf->nleaves; i++) { 59895fce210SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] %D <- (%D,%D)\n",rank,sf->mine ? sf->mine[i] : i,sf->remote[i].rank,sf->remote[i].index);CHKERRQ(ierr); 59995fce210SBarry Smith } 60095fce210SBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 60195fce210SBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 60295fce210SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 60381bfa7aaSJed Brown PetscMPIInt *tmpranks,*perm; 60481bfa7aaSJed Brown ierr = PetscMalloc2(sf->nranks,&tmpranks,sf->nranks,&perm);CHKERRQ(ierr); 60581bfa7aaSJed Brown ierr = PetscMemcpy(tmpranks,sf->ranks,sf->nranks*sizeof(tmpranks[0]));CHKERRQ(ierr); 60681bfa7aaSJed Brown for (i=0; i<sf->nranks; i++) perm[i] = i; 60781bfa7aaSJed Brown ierr = PetscSortMPIIntWithArray(sf->nranks,tmpranks,perm);CHKERRQ(ierr); 60895fce210SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Roots referenced by my leaves, by rank\n",rank);CHKERRQ(ierr); 60981bfa7aaSJed Brown for (ii=0; ii<sf->nranks; ii++) { 61081bfa7aaSJed Brown i = perm[ii]; 6117904a332SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] %d: %D edges\n",rank,sf->ranks[i],sf->roffset[i+1]-sf->roffset[i]);CHKERRQ(ierr); 61295fce210SBarry Smith for (j=sf->roffset[i]; j<sf->roffset[i+1]; j++) { 61395fce210SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] %D <- %D\n",rank,sf->rmine[j],sf->rremote[j]);CHKERRQ(ierr); 61495fce210SBarry Smith } 61595fce210SBarry Smith } 61681bfa7aaSJed Brown ierr = PetscFree2(tmpranks,perm);CHKERRQ(ierr); 61795fce210SBarry Smith } 61895fce210SBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 6191575c14dSBarry Smith ierr = PetscViewerASCIIPopSynchronized(viewer);CHKERRQ(ierr); 62095fce210SBarry Smith ierr = PetscViewerASCIIPopTab(viewer);CHKERRQ(ierr); 62195fce210SBarry Smith } 62295fce210SBarry Smith PetscFunctionReturn(0); 62395fce210SBarry Smith } 62495fce210SBarry Smith 62595fce210SBarry Smith /*@C 62695fce210SBarry Smith PetscSFGetRanks - Get ranks and number of vertices referenced by leaves on this process 62795fce210SBarry Smith 62895fce210SBarry Smith Not Collective 62995fce210SBarry Smith 63095fce210SBarry Smith Input Arguments: 63195fce210SBarry Smith . sf - star forest 63295fce210SBarry Smith 63395fce210SBarry Smith Output Arguments: 63495fce210SBarry Smith + nranks - number of ranks referenced by local part 63595fce210SBarry Smith . ranks - array of ranks 63695fce210SBarry Smith . roffset - offset in rmine/rremote for each rank (length nranks+1) 63795fce210SBarry Smith . rmine - concatenated array holding local indices referencing each remote rank 63895fce210SBarry Smith - rremote - concatenated array holding remote indices referenced for each remote rank 63995fce210SBarry Smith 64095fce210SBarry Smith Level: developer 64195fce210SBarry Smith 64295fce210SBarry Smith .seealso: PetscSFSetGraph() 64395fce210SBarry Smith @*/ 64495fce210SBarry Smith PetscErrorCode PetscSFGetRanks(PetscSF sf,PetscInt *nranks,const PetscMPIInt **ranks,const PetscInt **roffset,const PetscInt **rmine,const PetscInt **rremote) 64595fce210SBarry Smith { 64695fce210SBarry Smith 64795fce210SBarry Smith PetscFunctionBegin; 64895fce210SBarry Smith PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 64929046d53SLisandro Dalcin if (!sf->setupcalled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Must call PetscSFSetUp() before obtaining ranks"); 65095fce210SBarry Smith if (nranks) *nranks = sf->nranks; 65195fce210SBarry Smith if (ranks) *ranks = sf->ranks; 65295fce210SBarry Smith if (roffset) *roffset = sf->roffset; 65395fce210SBarry Smith if (rmine) *rmine = sf->rmine; 65495fce210SBarry Smith if (rremote) *rremote = sf->rremote; 65595fce210SBarry Smith PetscFunctionReturn(0); 65695fce210SBarry Smith } 65795fce210SBarry Smith 6588750ddebSJunchao Zhang /*@C 6598750ddebSJunchao Zhang PetscSFGetLeafRanks - Get leaf ranks referencing roots on this process 6608750ddebSJunchao Zhang 6618750ddebSJunchao Zhang Not Collective 6628750ddebSJunchao Zhang 6638750ddebSJunchao Zhang Input Arguments: 6648750ddebSJunchao Zhang . sf - star forest 6658750ddebSJunchao Zhang 6668750ddebSJunchao Zhang Output Arguments: 6678750ddebSJunchao Zhang + niranks - number of leaf ranks referencing roots on this process 6688750ddebSJunchao Zhang . iranks - array of ranks 6698750ddebSJunchao Zhang . ioffset - offset in irootloc for each rank (length niranks+1) 6708750ddebSJunchao Zhang - irootloc - concatenated array holding local indices of roots referenced by each leaf rank 6718750ddebSJunchao Zhang 6728750ddebSJunchao Zhang Level: developer 6738750ddebSJunchao Zhang 6748750ddebSJunchao Zhang .seealso: PetscSFGetRanks() 6758750ddebSJunchao Zhang @*/ 6768750ddebSJunchao Zhang PetscErrorCode PetscSFGetLeafRanks(PetscSF sf,PetscInt *niranks,const PetscMPIInt **iranks,const PetscInt **ioffset,const PetscInt **irootloc) 6778750ddebSJunchao Zhang { 6788750ddebSJunchao Zhang PetscErrorCode ierr; 6798750ddebSJunchao Zhang 6808750ddebSJunchao Zhang PetscFunctionBegin; 6818750ddebSJunchao Zhang PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 6828750ddebSJunchao Zhang if (!sf->setupcalled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Must call PetscSFSetUp() before obtaining ranks"); 6838750ddebSJunchao Zhang if (sf->ops->GetLeafRanks) { 6848750ddebSJunchao Zhang ierr = (sf->ops->GetLeafRanks)(sf,niranks,iranks,ioffset,irootloc);CHKERRQ(ierr); 6858750ddebSJunchao Zhang } else { 6868750ddebSJunchao Zhang PetscSFType type; 6878750ddebSJunchao Zhang ierr = PetscSFGetType(sf,&type);CHKERRQ(ierr); 6888750ddebSJunchao Zhang SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"PetscSFGetLeafRanks() is not supported on this StarForest type: %s", type); 6898750ddebSJunchao Zhang } 6908750ddebSJunchao Zhang PetscFunctionReturn(0); 6918750ddebSJunchao Zhang } 6928750ddebSJunchao Zhang 693b5a8e515SJed Brown static PetscBool InList(PetscMPIInt needle,PetscMPIInt n,const PetscMPIInt *list) { 694b5a8e515SJed Brown PetscInt i; 695b5a8e515SJed Brown for (i=0; i<n; i++) { 696b5a8e515SJed Brown if (needle == list[i]) return PETSC_TRUE; 697b5a8e515SJed Brown } 698b5a8e515SJed Brown return PETSC_FALSE; 699b5a8e515SJed Brown } 700b5a8e515SJed Brown 70195fce210SBarry Smith /*@C 70221c688dcSJed Brown PetscSFSetUpRanks - Set up data structures associated with ranks; this is for internal use by PetscSF implementations. 70321c688dcSJed Brown 70421c688dcSJed Brown Collective 70521c688dcSJed Brown 70621c688dcSJed Brown Input Arguments: 707b5a8e515SJed Brown + sf - PetscSF to set up; PetscSFSetGraph() must have been called 708b5a8e515SJed Brown - dgroup - MPI_Group of ranks to be distinguished (e.g., for self or shared memory exchange) 70921c688dcSJed Brown 71021c688dcSJed Brown Level: developer 71121c688dcSJed Brown 71221c688dcSJed Brown .seealso: PetscSFGetRanks() 71321c688dcSJed Brown @*/ 714b5a8e515SJed Brown PetscErrorCode PetscSFSetUpRanks(PetscSF sf,MPI_Group dgroup) 71521c688dcSJed Brown { 71621c688dcSJed Brown PetscErrorCode ierr; 71721c688dcSJed Brown PetscTable table; 71821c688dcSJed Brown PetscTablePosition pos; 719b5a8e515SJed Brown PetscMPIInt size,groupsize,*groupranks; 720247e8311SStefano Zampini PetscInt *rcount,*ranks; 721247e8311SStefano Zampini PetscInt i, irank = -1,orank = -1; 72221c688dcSJed Brown 72321c688dcSJed Brown PetscFunctionBegin; 72421c688dcSJed Brown PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 72529046d53SLisandro Dalcin PetscSFCheckGraphSet(sf,1); 72621c688dcSJed Brown ierr = MPI_Comm_size(PetscObjectComm((PetscObject)sf),&size);CHKERRQ(ierr); 72721c688dcSJed Brown ierr = PetscTableCreate(10,size,&table);CHKERRQ(ierr); 72821c688dcSJed Brown for (i=0; i<sf->nleaves; i++) { 72921c688dcSJed Brown /* Log 1-based rank */ 73021c688dcSJed Brown ierr = PetscTableAdd(table,sf->remote[i].rank+1,1,ADD_VALUES);CHKERRQ(ierr); 73121c688dcSJed Brown } 73221c688dcSJed Brown ierr = PetscTableGetCount(table,&sf->nranks);CHKERRQ(ierr); 73321c688dcSJed Brown ierr = PetscMalloc4(sf->nranks,&sf->ranks,sf->nranks+1,&sf->roffset,sf->nleaves,&sf->rmine,sf->nleaves,&sf->rremote);CHKERRQ(ierr); 73421c688dcSJed Brown ierr = PetscMalloc2(sf->nranks,&rcount,sf->nranks,&ranks);CHKERRQ(ierr); 73521c688dcSJed Brown ierr = PetscTableGetHeadPosition(table,&pos);CHKERRQ(ierr); 73621c688dcSJed Brown for (i=0; i<sf->nranks; i++) { 73721c688dcSJed Brown ierr = PetscTableGetNext(table,&pos,&ranks[i],&rcount[i]);CHKERRQ(ierr); 73821c688dcSJed Brown ranks[i]--; /* Convert back to 0-based */ 73921c688dcSJed Brown } 74021c688dcSJed Brown ierr = PetscTableDestroy(&table);CHKERRQ(ierr); 741b5a8e515SJed Brown 742b5a8e515SJed Brown /* We expect that dgroup is reliably "small" while nranks could be large */ 743b5a8e515SJed Brown { 7447fb8a5e4SKarl Rupp MPI_Group group = MPI_GROUP_NULL; 745b5a8e515SJed Brown PetscMPIInt *dgroupranks; 746b5a8e515SJed Brown ierr = MPI_Comm_group(PetscObjectComm((PetscObject)sf),&group);CHKERRQ(ierr); 747b5a8e515SJed Brown ierr = MPI_Group_size(dgroup,&groupsize);CHKERRQ(ierr); 748b5a8e515SJed Brown ierr = PetscMalloc1(groupsize,&dgroupranks);CHKERRQ(ierr); 749b5a8e515SJed Brown ierr = PetscMalloc1(groupsize,&groupranks);CHKERRQ(ierr); 750b5a8e515SJed Brown for (i=0; i<groupsize; i++) dgroupranks[i] = i; 751f3fc9a17SJed Brown if (groupsize) {ierr = MPI_Group_translate_ranks(dgroup,groupsize,dgroupranks,group,groupranks);CHKERRQ(ierr);} 752b5a8e515SJed Brown ierr = MPI_Group_free(&group);CHKERRQ(ierr); 753b5a8e515SJed Brown ierr = PetscFree(dgroupranks);CHKERRQ(ierr); 754b5a8e515SJed Brown } 755b5a8e515SJed Brown 756b5a8e515SJed Brown /* Partition ranks[] into distinguished (first sf->ndranks) followed by non-distinguished */ 757b5a8e515SJed Brown for (sf->ndranks=0,i=sf->nranks; sf->ndranks<i; ) { 758b5a8e515SJed Brown for (i--; sf->ndranks<i; i--) { /* Scan i backward looking for distinguished rank */ 759b5a8e515SJed Brown if (InList(ranks[i],groupsize,groupranks)) break; 760b5a8e515SJed Brown } 761b5a8e515SJed Brown for ( ; sf->ndranks<=i; sf->ndranks++) { /* Scan sf->ndranks forward looking for non-distinguished rank */ 762b5a8e515SJed Brown if (!InList(ranks[sf->ndranks],groupsize,groupranks)) break; 763b5a8e515SJed Brown } 764b5a8e515SJed Brown if (sf->ndranks < i) { /* Swap ranks[sf->ndranks] with ranks[i] */ 765b5a8e515SJed Brown PetscInt tmprank,tmpcount; 766247e8311SStefano Zampini 767b5a8e515SJed Brown tmprank = ranks[i]; 768b5a8e515SJed Brown tmpcount = rcount[i]; 769b5a8e515SJed Brown ranks[i] = ranks[sf->ndranks]; 770b5a8e515SJed Brown rcount[i] = rcount[sf->ndranks]; 771b5a8e515SJed Brown ranks[sf->ndranks] = tmprank; 772b5a8e515SJed Brown rcount[sf->ndranks] = tmpcount; 773b5a8e515SJed Brown sf->ndranks++; 774b5a8e515SJed Brown } 775b5a8e515SJed Brown } 776b5a8e515SJed Brown ierr = PetscFree(groupranks);CHKERRQ(ierr); 777b5a8e515SJed Brown ierr = PetscSortIntWithArray(sf->ndranks,ranks,rcount);CHKERRQ(ierr); 778b5a8e515SJed Brown ierr = PetscSortIntWithArray(sf->nranks-sf->ndranks,ranks+sf->ndranks,rcount+sf->ndranks);CHKERRQ(ierr); 77921c688dcSJed Brown sf->roffset[0] = 0; 78021c688dcSJed Brown for (i=0; i<sf->nranks; i++) { 78121c688dcSJed Brown ierr = PetscMPIIntCast(ranks[i],sf->ranks+i);CHKERRQ(ierr); 78221c688dcSJed Brown sf->roffset[i+1] = sf->roffset[i] + rcount[i]; 78321c688dcSJed Brown rcount[i] = 0; 78421c688dcSJed Brown } 785247e8311SStefano Zampini for (i=0, irank = -1, orank = -1; i<sf->nleaves; i++) { 786247e8311SStefano Zampini /* short circuit */ 787247e8311SStefano Zampini if (orank != sf->remote[i].rank) { 78821c688dcSJed Brown /* Search for index of iremote[i].rank in sf->ranks */ 789b5a8e515SJed Brown ierr = PetscFindMPIInt(sf->remote[i].rank,sf->ndranks,sf->ranks,&irank);CHKERRQ(ierr); 790b5a8e515SJed Brown if (irank < 0) { 791b5a8e515SJed Brown ierr = PetscFindMPIInt(sf->remote[i].rank,sf->nranks-sf->ndranks,sf->ranks+sf->ndranks,&irank);CHKERRQ(ierr); 792b5a8e515SJed Brown if (irank >= 0) irank += sf->ndranks; 79321c688dcSJed Brown } 794247e8311SStefano Zampini orank = sf->remote[i].rank; 795247e8311SStefano Zampini } 796b5a8e515SJed Brown if (irank < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Could not find rank %D in array",sf->remote[i].rank); 79721c688dcSJed Brown sf->rmine[sf->roffset[irank] + rcount[irank]] = sf->mine ? sf->mine[i] : i; 79821c688dcSJed Brown sf->rremote[sf->roffset[irank] + rcount[irank]] = sf->remote[i].index; 79921c688dcSJed Brown rcount[irank]++; 80021c688dcSJed Brown } 80121c688dcSJed Brown ierr = PetscFree2(rcount,ranks);CHKERRQ(ierr); 80221c688dcSJed Brown PetscFunctionReturn(0); 80321c688dcSJed Brown } 80421c688dcSJed Brown 80521c688dcSJed Brown /*@C 80695fce210SBarry Smith PetscSFGetGroups - gets incoming and outgoing process groups 80795fce210SBarry Smith 80895fce210SBarry Smith Collective 80995fce210SBarry Smith 81095fce210SBarry Smith Input Argument: 81195fce210SBarry Smith . sf - star forest 81295fce210SBarry Smith 81395fce210SBarry Smith Output Arguments: 81495fce210SBarry Smith + incoming - group of origin processes for incoming edges (leaves that reference my roots) 81595fce210SBarry Smith - outgoing - group of destination processes for outgoing edges (roots that I reference) 81695fce210SBarry Smith 81795fce210SBarry Smith Level: developer 81895fce210SBarry Smith 81995fce210SBarry Smith .seealso: PetscSFGetWindow(), PetscSFRestoreWindow() 82095fce210SBarry Smith @*/ 82195fce210SBarry Smith PetscErrorCode PetscSFGetGroups(PetscSF sf,MPI_Group *incoming,MPI_Group *outgoing) 82295fce210SBarry Smith { 82395fce210SBarry Smith PetscErrorCode ierr; 8247fb8a5e4SKarl Rupp MPI_Group group = MPI_GROUP_NULL; 82595fce210SBarry Smith 82695fce210SBarry Smith PetscFunctionBegin; 82729046d53SLisandro Dalcin if (!sf->setupcalled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Must call PetscSFSetUp() before obtaining groups"); 82895fce210SBarry Smith if (sf->ingroup == MPI_GROUP_NULL) { 82995fce210SBarry Smith PetscInt i; 83095fce210SBarry Smith const PetscInt *indegree; 83195fce210SBarry Smith PetscMPIInt rank,*outranks,*inranks; 83295fce210SBarry Smith PetscSFNode *remote; 83395fce210SBarry Smith PetscSF bgcount; 83495fce210SBarry Smith 83595fce210SBarry Smith /* Compute the number of incoming ranks */ 836785e854fSJed Brown ierr = PetscMalloc1(sf->nranks,&remote);CHKERRQ(ierr); 83795fce210SBarry Smith for (i=0; i<sf->nranks; i++) { 83895fce210SBarry Smith remote[i].rank = sf->ranks[i]; 83995fce210SBarry Smith remote[i].index = 0; 84095fce210SBarry Smith } 84195fce210SBarry Smith ierr = PetscSFDuplicate(sf,PETSCSF_DUPLICATE_CONFONLY,&bgcount);CHKERRQ(ierr); 84295fce210SBarry Smith ierr = PetscSFSetGraph(bgcount,1,sf->nranks,NULL,PETSC_COPY_VALUES,remote,PETSC_OWN_POINTER);CHKERRQ(ierr); 84395fce210SBarry Smith ierr = PetscSFComputeDegreeBegin(bgcount,&indegree);CHKERRQ(ierr); 84495fce210SBarry Smith ierr = PetscSFComputeDegreeEnd(bgcount,&indegree);CHKERRQ(ierr); 84595fce210SBarry Smith 84695fce210SBarry Smith /* Enumerate the incoming ranks */ 847dcca6d9dSJed Brown ierr = PetscMalloc2(indegree[0],&inranks,sf->nranks,&outranks);CHKERRQ(ierr); 84895fce210SBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)sf),&rank);CHKERRQ(ierr); 84995fce210SBarry Smith for (i=0; i<sf->nranks; i++) outranks[i] = rank; 85095fce210SBarry Smith ierr = PetscSFGatherBegin(bgcount,MPI_INT,outranks,inranks);CHKERRQ(ierr); 85195fce210SBarry Smith ierr = PetscSFGatherEnd(bgcount,MPI_INT,outranks,inranks);CHKERRQ(ierr); 85295fce210SBarry Smith ierr = MPI_Comm_group(PetscObjectComm((PetscObject)sf),&group);CHKERRQ(ierr); 85395fce210SBarry Smith ierr = MPI_Group_incl(group,indegree[0],inranks,&sf->ingroup);CHKERRQ(ierr); 85495fce210SBarry Smith ierr = MPI_Group_free(&group);CHKERRQ(ierr); 85595fce210SBarry Smith ierr = PetscFree2(inranks,outranks);CHKERRQ(ierr); 85695fce210SBarry Smith ierr = PetscSFDestroy(&bgcount);CHKERRQ(ierr); 85795fce210SBarry Smith } 85895fce210SBarry Smith *incoming = sf->ingroup; 85995fce210SBarry Smith 86095fce210SBarry Smith if (sf->outgroup == MPI_GROUP_NULL) { 86195fce210SBarry Smith ierr = MPI_Comm_group(PetscObjectComm((PetscObject)sf),&group);CHKERRQ(ierr); 86295fce210SBarry Smith ierr = MPI_Group_incl(group,sf->nranks,sf->ranks,&sf->outgroup);CHKERRQ(ierr); 86395fce210SBarry Smith ierr = MPI_Group_free(&group);CHKERRQ(ierr); 86495fce210SBarry Smith } 86595fce210SBarry Smith *outgoing = sf->outgroup; 86695fce210SBarry Smith PetscFunctionReturn(0); 86795fce210SBarry Smith } 86895fce210SBarry Smith 86929046d53SLisandro Dalcin /*@ 87095fce210SBarry Smith PetscSFGetMultiSF - gets the inner SF implemeting gathers and scatters 87195fce210SBarry Smith 87295fce210SBarry Smith Collective 87395fce210SBarry Smith 87495fce210SBarry Smith Input Argument: 87595fce210SBarry Smith . sf - star forest that may contain roots with 0 or with more than 1 vertex 87695fce210SBarry Smith 87795fce210SBarry Smith Output Arguments: 87895fce210SBarry Smith . multi - star forest with split roots, such that each root has degree exactly 1 87995fce210SBarry Smith 88095fce210SBarry Smith Level: developer 88195fce210SBarry Smith 88295fce210SBarry Smith Notes: 88395fce210SBarry Smith 88495fce210SBarry Smith In most cases, users should use PetscSFGatherBegin() and PetscSFScatterBegin() instead of manipulating multi 88595fce210SBarry Smith directly. Since multi satisfies the stronger condition that each entry in the global space has exactly one incoming 88695fce210SBarry Smith edge, it is a candidate for future optimization that might involve its removal. 88795fce210SBarry Smith 888673100f5SVaclav Hapla .seealso: PetscSFSetGraph(), PetscSFGatherBegin(), PetscSFScatterBegin(), PetscSFComputeMultiRootOriginalNumbering() 88995fce210SBarry Smith @*/ 89095fce210SBarry Smith PetscErrorCode PetscSFGetMultiSF(PetscSF sf,PetscSF *multi) 89195fce210SBarry Smith { 89295fce210SBarry Smith PetscErrorCode ierr; 89395fce210SBarry Smith 89495fce210SBarry Smith PetscFunctionBegin; 89595fce210SBarry Smith PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 89695fce210SBarry Smith PetscValidPointer(multi,2); 89795fce210SBarry Smith if (sf->nroots < 0) { /* Graph has not been set yet; why do we need this? */ 89895fce210SBarry Smith ierr = PetscSFDuplicate(sf,PETSCSF_DUPLICATE_RANKS,&sf->multi);CHKERRQ(ierr); 89995fce210SBarry Smith *multi = sf->multi; 90095fce210SBarry Smith PetscFunctionReturn(0); 90195fce210SBarry Smith } 90295fce210SBarry Smith if (!sf->multi) { 90395fce210SBarry Smith const PetscInt *indegree; 9049837ea96SMatthew G. Knepley PetscInt i,*inoffset,*outones,*outoffset,maxlocal; 90595fce210SBarry Smith PetscSFNode *remote; 90629046d53SLisandro Dalcin maxlocal = sf->maxleaf+1; /* TODO: We should use PetscSFGetLeafRange() */ 90795fce210SBarry Smith ierr = PetscSFComputeDegreeBegin(sf,&indegree);CHKERRQ(ierr); 90895fce210SBarry Smith ierr = PetscSFComputeDegreeEnd(sf,&indegree);CHKERRQ(ierr); 9099837ea96SMatthew G. Knepley ierr = PetscMalloc3(sf->nroots+1,&inoffset,maxlocal,&outones,maxlocal,&outoffset);CHKERRQ(ierr); 91095fce210SBarry Smith inoffset[0] = 0; 91195fce210SBarry Smith for (i=0; i<sf->nroots; i++) inoffset[i+1] = inoffset[i] + indegree[i]; 9129837ea96SMatthew G. Knepley for (i=0; i<maxlocal; i++) outones[i] = 1; 913dbd2ff41SBarry Smith ierr = PetscSFFetchAndOpBegin(sf,MPIU_INT,inoffset,outones,outoffset,MPI_SUM);CHKERRQ(ierr); 914dbd2ff41SBarry Smith ierr = PetscSFFetchAndOpEnd(sf,MPIU_INT,inoffset,outones,outoffset,MPI_SUM);CHKERRQ(ierr); 91595fce210SBarry Smith for (i=0; i<sf->nroots; i++) inoffset[i] -= indegree[i]; /* Undo the increment */ 91695fce210SBarry Smith #if 0 91795fce210SBarry Smith #if defined(PETSC_USE_DEBUG) /* Check that the expected number of increments occurred */ 91895fce210SBarry Smith for (i=0; i<sf->nroots; i++) { 91995fce210SBarry Smith if (inoffset[i] + indegree[i] != inoffset[i+1]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect result after PetscSFFetchAndOp"); 92095fce210SBarry Smith } 92195fce210SBarry Smith #endif 92295fce210SBarry Smith #endif 923785e854fSJed Brown ierr = PetscMalloc1(sf->nleaves,&remote);CHKERRQ(ierr); 92495fce210SBarry Smith for (i=0; i<sf->nleaves; i++) { 92595fce210SBarry Smith remote[i].rank = sf->remote[i].rank; 92638e7336fSToby Isaac remote[i].index = outoffset[sf->mine ? sf->mine[i] : i]; 92795fce210SBarry Smith } 92895fce210SBarry Smith ierr = PetscSFDuplicate(sf,PETSCSF_DUPLICATE_RANKS,&sf->multi);CHKERRQ(ierr); 92901365b40SToby Isaac ierr = PetscSFSetGraph(sf->multi,inoffset[sf->nroots],sf->nleaves,sf->mine,PETSC_COPY_VALUES,remote,PETSC_OWN_POINTER);CHKERRQ(ierr); 93095fce210SBarry Smith if (sf->rankorder) { /* Sort the ranks */ 93195fce210SBarry Smith PetscMPIInt rank; 93295fce210SBarry Smith PetscInt *inranks,*newoffset,*outranks,*newoutoffset,*tmpoffset,maxdegree; 93395fce210SBarry Smith PetscSFNode *newremote; 93495fce210SBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)sf),&rank);CHKERRQ(ierr); 93595fce210SBarry Smith for (i=0,maxdegree=0; i<sf->nroots; i++) maxdegree = PetscMax(maxdegree,indegree[i]); 9369837ea96SMatthew G. Knepley ierr = PetscMalloc5(sf->multi->nroots,&inranks,sf->multi->nroots,&newoffset,maxlocal,&outranks,maxlocal,&newoutoffset,maxdegree,&tmpoffset);CHKERRQ(ierr); 9379837ea96SMatthew G. Knepley for (i=0; i<maxlocal; i++) outranks[i] = rank; 9388bfbc91cSJed Brown ierr = PetscSFReduceBegin(sf->multi,MPIU_INT,outranks,inranks,MPIU_REPLACE);CHKERRQ(ierr); 9398bfbc91cSJed Brown ierr = PetscSFReduceEnd(sf->multi,MPIU_INT,outranks,inranks,MPIU_REPLACE);CHKERRQ(ierr); 94095fce210SBarry Smith /* Sort the incoming ranks at each vertex, build the inverse map */ 94195fce210SBarry Smith for (i=0; i<sf->nroots; i++) { 94295fce210SBarry Smith PetscInt j; 94395fce210SBarry Smith for (j=0; j<indegree[i]; j++) tmpoffset[j] = j; 94495fce210SBarry Smith ierr = PetscSortIntWithArray(indegree[i],inranks+inoffset[i],tmpoffset);CHKERRQ(ierr); 94595fce210SBarry Smith for (j=0; j<indegree[i]; j++) newoffset[inoffset[i] + tmpoffset[j]] = inoffset[i] + j; 94695fce210SBarry Smith } 94795fce210SBarry Smith ierr = PetscSFBcastBegin(sf->multi,MPIU_INT,newoffset,newoutoffset);CHKERRQ(ierr); 94895fce210SBarry Smith ierr = PetscSFBcastEnd(sf->multi,MPIU_INT,newoffset,newoutoffset);CHKERRQ(ierr); 949785e854fSJed Brown ierr = PetscMalloc1(sf->nleaves,&newremote);CHKERRQ(ierr); 95095fce210SBarry Smith for (i=0; i<sf->nleaves; i++) { 95195fce210SBarry Smith newremote[i].rank = sf->remote[i].rank; 95201365b40SToby Isaac newremote[i].index = newoutoffset[sf->mine ? sf->mine[i] : i]; 95395fce210SBarry Smith } 95401365b40SToby Isaac ierr = PetscSFSetGraph(sf->multi,inoffset[sf->nroots],sf->nleaves,sf->mine,PETSC_COPY_VALUES,newremote,PETSC_OWN_POINTER);CHKERRQ(ierr); 95595fce210SBarry Smith ierr = PetscFree5(inranks,newoffset,outranks,newoutoffset,tmpoffset);CHKERRQ(ierr); 95695fce210SBarry Smith } 95795fce210SBarry Smith ierr = PetscFree3(inoffset,outones,outoffset);CHKERRQ(ierr); 95895fce210SBarry Smith } 95995fce210SBarry Smith *multi = sf->multi; 96095fce210SBarry Smith PetscFunctionReturn(0); 96195fce210SBarry Smith } 96295fce210SBarry Smith 96395fce210SBarry Smith /*@C 96495fce210SBarry Smith PetscSFCreateEmbeddedSF - removes edges from all but the selected roots, does not remap indices 96595fce210SBarry Smith 96695fce210SBarry Smith Collective 96795fce210SBarry Smith 96895fce210SBarry Smith Input Arguments: 96995fce210SBarry Smith + sf - original star forest 970ba2a7774SJunchao Zhang . nselected - number of selected roots on this process 971ba2a7774SJunchao Zhang - selected - indices of the selected roots on this process 97295fce210SBarry Smith 97395fce210SBarry Smith Output Arguments: 97495fce210SBarry Smith . newsf - new star forest 97595fce210SBarry Smith 97695fce210SBarry Smith Level: advanced 97795fce210SBarry Smith 97895fce210SBarry Smith Note: 97995fce210SBarry Smith To use the new PetscSF, it may be necessary to know the indices of the leaves that are still participating. This can 98095fce210SBarry Smith be done by calling PetscSFGetGraph(). 98195fce210SBarry Smith 98295fce210SBarry Smith .seealso: PetscSFSetGraph(), PetscSFGetGraph() 98395fce210SBarry Smith @*/ 984ba2a7774SJunchao Zhang PetscErrorCode PetscSFCreateEmbeddedSF(PetscSF sf,PetscInt nselected,const PetscInt *selected,PetscSF *newsf) 98595fce210SBarry Smith { 986ba2a7774SJunchao Zhang PetscInt *rootdata,*leafdata,*new_ilocal; 987ba2a7774SJunchao Zhang PetscSFNode *new_iremote; 988ba2a7774SJunchao Zhang const PetscInt *ilocal; 989ba2a7774SJunchao Zhang const PetscSFNode *iremote; 990ba2a7774SJunchao Zhang PetscInt nleaves,nroots,n,i,new_nleaves = 0; 991ba2a7774SJunchao Zhang PetscSF tmpsf; 9920511a646SMatthew G. Knepley PetscErrorCode ierr; 99395fce210SBarry Smith 99495fce210SBarry Smith PetscFunctionBegin; 99595fce210SBarry Smith PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 99629046d53SLisandro Dalcin PetscSFCheckGraphSet(sf,1); 997ba2a7774SJunchao Zhang if (nselected) PetscValidPointer(selected,3); 99895fce210SBarry Smith PetscValidPointer(newsf,4); 999524e35f8SStefano Zampini ierr = PetscLogEventBegin(PETSCSF_EmbedSF,sf,0,0,0);CHKERRQ(ierr); 10000511a646SMatthew G. Knepley 1001ba2a7774SJunchao Zhang /* Find out which leaves (not leaf data items) are still connected to roots in the embedded sf */ 1002ba2a7774SJunchao Zhang ierr = PetscSFGetGraph(sf,&nroots,&nleaves,&ilocal,&iremote);CHKERRQ(ierr); 1003ba2a7774SJunchao Zhang ierr = PetscSFDuplicate(sf,PETSCSF_DUPLICATE_RANKS,&tmpsf);CHKERRQ(ierr); 1004ba2a7774SJunchao Zhang ierr = PetscSFSetGraph(tmpsf,nroots,nleaves,NULL/*contiguous*/,PETSC_USE_POINTER,iremote,PETSC_USE_POINTER);CHKERRQ(ierr); 1005ba2a7774SJunchao Zhang ierr = PetscCalloc2(nroots,&rootdata,nleaves,&leafdata);CHKERRQ(ierr); 1006ba2a7774SJunchao Zhang for (i=0; i<nselected; ++i) { 100746fbb50bSJunchao Zhang if (selected[i] < 0 || selected[i] >= nroots) SETERRQ2(PetscObjectComm((PetscObject)sf),PETSC_ERR_ARG_OUTOFRANGE,"Root index %D is not in [0,%D)",selected[i],nroots); 1008ba2a7774SJunchao Zhang rootdata[selected[i]] = 1; 1009ba2a7774SJunchao Zhang } 1010ba2a7774SJunchao Zhang 1011ba2a7774SJunchao Zhang ierr = PetscSFBcastBegin(tmpsf,MPIU_INT,rootdata,leafdata);CHKERRQ(ierr); 1012ba2a7774SJunchao Zhang ierr = PetscSFBcastEnd(tmpsf,MPIU_INT,rootdata,leafdata);CHKERRQ(ierr); 1013ba2a7774SJunchao Zhang ierr = PetscSFDestroy(&tmpsf);CHKERRQ(ierr); 1014ba2a7774SJunchao Zhang 1015ba2a7774SJunchao Zhang /* Build newsf with leaves that are still connected */ 1016ba2a7774SJunchao Zhang for (i = 0; i < nleaves; ++i) new_nleaves += leafdata[i]; 1017ba2a7774SJunchao Zhang ierr = PetscMalloc1(new_nleaves,&new_ilocal);CHKERRQ(ierr); 1018ba2a7774SJunchao Zhang ierr = PetscMalloc1(new_nleaves,&new_iremote);CHKERRQ(ierr); 1019ba2a7774SJunchao Zhang for (i = 0, n = 0; i < nleaves; ++i) { 1020ba2a7774SJunchao Zhang if (leafdata[i]) { 1021ba2a7774SJunchao Zhang new_ilocal[n] = sf->mine ? sf->mine[i] : i; 1022ba2a7774SJunchao Zhang new_iremote[n].rank = sf->remote[i].rank; 1023ba2a7774SJunchao Zhang new_iremote[n].index = sf->remote[i].index; 1024fc1ede2bSMatthew G. Knepley ++n; 102595fce210SBarry Smith } 102695fce210SBarry Smith } 1027*41bb73faSSatish Balay if (n != new_nleaves) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_PLIB,"There is a size mismatch in the SF embedding, %D != %D",n,new_nleaves); 1028ba2a7774SJunchao Zhang ierr = PetscSFDuplicate(sf,PETSCSF_DUPLICATE_CONFONLY,newsf);CHKERRQ(ierr); 1029ba2a7774SJunchao Zhang ierr = PetscSFSetGraph(*newsf,nroots,new_nleaves,new_ilocal,PETSC_OWN_POINTER,new_iremote,PETSC_OWN_POINTER);CHKERRQ(ierr); 103095fce210SBarry Smith ierr = PetscFree2(rootdata,leafdata);CHKERRQ(ierr); 1031524e35f8SStefano Zampini ierr = PetscSFSetUp(*newsf);CHKERRQ(ierr); 1032524e35f8SStefano Zampini ierr = PetscLogEventEnd(PETSCSF_EmbedSF,sf,0,0,0);CHKERRQ(ierr); 103395fce210SBarry Smith PetscFunctionReturn(0); 103495fce210SBarry Smith } 103595fce210SBarry Smith 10362f5fb4c2SMatthew G. Knepley /*@C 10372f5fb4c2SMatthew G. Knepley PetscSFCreateEmbeddedLeafSF - removes edges from all but the selected leaves, does not remap indices 10382f5fb4c2SMatthew G. Knepley 10392f5fb4c2SMatthew G. Knepley Collective 10402f5fb4c2SMatthew G. Knepley 10412f5fb4c2SMatthew G. Knepley Input Arguments: 10422f5fb4c2SMatthew G. Knepley + sf - original star forest 10432f5fb4c2SMatthew G. Knepley . nleaves - number of leaves to select on this process 10442f5fb4c2SMatthew G. Knepley - selected - selected leaves on this process 10452f5fb4c2SMatthew G. Knepley 10462f5fb4c2SMatthew G. Knepley Output Arguments: 10472f5fb4c2SMatthew G. Knepley . newsf - new star forest 10482f5fb4c2SMatthew G. Knepley 10492f5fb4c2SMatthew G. Knepley Level: advanced 10502f5fb4c2SMatthew G. Knepley 10512f5fb4c2SMatthew G. Knepley .seealso: PetscSFCreateEmbeddedSF(), PetscSFSetGraph(), PetscSFGetGraph() 10522f5fb4c2SMatthew G. Knepley @*/ 10532f5fb4c2SMatthew G. Knepley PetscErrorCode PetscSFCreateEmbeddedLeafSF(PetscSF sf, PetscInt nleaves, const PetscInt *selected, PetscSF *newsf) 10542f5fb4c2SMatthew G. Knepley { 10552f5fb4c2SMatthew G. Knepley PetscSFNode *iremote; 10562f5fb4c2SMatthew G. Knepley PetscInt *ilocal; 10572f5fb4c2SMatthew G. Knepley PetscInt i; 10582f5fb4c2SMatthew G. Knepley PetscErrorCode ierr; 10592f5fb4c2SMatthew G. Knepley 10602f5fb4c2SMatthew G. Knepley PetscFunctionBegin; 10612f5fb4c2SMatthew G. Knepley PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 106229046d53SLisandro Dalcin PetscSFCheckGraphSet(sf, 1); 10632f5fb4c2SMatthew G. Knepley if (nleaves) PetscValidPointer(selected, 3); 10642f5fb4c2SMatthew G. Knepley PetscValidPointer(newsf, 4); 10652f5fb4c2SMatthew G. Knepley ierr = PetscMalloc1(nleaves, &ilocal);CHKERRQ(ierr); 10662f5fb4c2SMatthew G. Knepley ierr = PetscMalloc1(nleaves, &iremote);CHKERRQ(ierr); 10672f5fb4c2SMatthew G. Knepley for (i = 0; i < nleaves; ++i) { 10682f5fb4c2SMatthew G. Knepley const PetscInt l = selected[i]; 10692f5fb4c2SMatthew G. Knepley 10702f5fb4c2SMatthew G. Knepley ilocal[i] = sf->mine ? sf->mine[l] : l; 10712f5fb4c2SMatthew G. Knepley iremote[i].rank = sf->remote[l].rank; 10722f5fb4c2SMatthew G. Knepley iremote[i].index = sf->remote[l].index; 10732f5fb4c2SMatthew G. Knepley } 10742f5fb4c2SMatthew G. Knepley ierr = PetscSFDuplicate(sf, PETSCSF_DUPLICATE_RANKS, newsf);CHKERRQ(ierr); 10752f5fb4c2SMatthew G. Knepley ierr = PetscSFSetGraph(*newsf, sf->nroots, nleaves, ilocal, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER);CHKERRQ(ierr); 10762f5fb4c2SMatthew G. Knepley PetscFunctionReturn(0); 10772f5fb4c2SMatthew G. Knepley } 10782f5fb4c2SMatthew G. Knepley 107995fce210SBarry Smith /*@C 108095fce210SBarry Smith PetscSFBcastBegin - begin pointwise broadcast to be concluded with call to PetscSFBcastEnd() 108195fce210SBarry Smith 108295fce210SBarry Smith Collective on PetscSF 108395fce210SBarry Smith 108495fce210SBarry Smith Input Arguments: 108595fce210SBarry Smith + sf - star forest on which to communicate 108695fce210SBarry Smith . unit - data type associated with each node 108795fce210SBarry Smith - rootdata - buffer to broadcast 108895fce210SBarry Smith 108995fce210SBarry Smith Output Arguments: 109095fce210SBarry Smith . leafdata - buffer to update with values from each leaf's respective root 109195fce210SBarry Smith 109295fce210SBarry Smith Level: intermediate 109395fce210SBarry Smith 109495fce210SBarry Smith .seealso: PetscSFCreate(), PetscSFSetGraph(), PetscSFView(), PetscSFBcastEnd(), PetscSFReduceBegin() 109595fce210SBarry Smith @*/ 109695fce210SBarry Smith PetscErrorCode PetscSFBcastBegin(PetscSF sf,MPI_Datatype unit,const void *rootdata,void *leafdata) 109795fce210SBarry Smith { 109895fce210SBarry Smith PetscErrorCode ierr; 109995fce210SBarry Smith 110095fce210SBarry Smith PetscFunctionBegin; 110195fce210SBarry Smith PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 110295fce210SBarry Smith ierr = PetscSFSetUp(sf);CHKERRQ(ierr); 110329046d53SLisandro Dalcin ierr = PetscLogEventBegin(PETSCSF_BcastBegin,sf,0,0,0);CHKERRQ(ierr); 110495fce210SBarry Smith ierr = (*sf->ops->BcastBegin)(sf,unit,rootdata,leafdata);CHKERRQ(ierr); 1105563ffbabSMatthew G. Knepley ierr = PetscLogEventEnd(PETSCSF_BcastBegin,sf,0,0,0);CHKERRQ(ierr); 110695fce210SBarry Smith PetscFunctionReturn(0); 110795fce210SBarry Smith } 110895fce210SBarry Smith 110995fce210SBarry Smith /*@C 111095fce210SBarry Smith PetscSFBcastEnd - end a broadcast operation started with PetscSFBcastBegin() 111195fce210SBarry Smith 111295fce210SBarry Smith Collective 111395fce210SBarry Smith 111495fce210SBarry Smith Input Arguments: 111595fce210SBarry Smith + sf - star forest 111695fce210SBarry Smith . unit - data type 111795fce210SBarry Smith - rootdata - buffer to broadcast 111895fce210SBarry Smith 111995fce210SBarry Smith Output Arguments: 112095fce210SBarry Smith . leafdata - buffer to update with values from each leaf's respective root 112195fce210SBarry Smith 112295fce210SBarry Smith Level: intermediate 112395fce210SBarry Smith 112495fce210SBarry Smith .seealso: PetscSFSetGraph(), PetscSFReduceEnd() 112595fce210SBarry Smith @*/ 112695fce210SBarry Smith PetscErrorCode PetscSFBcastEnd(PetscSF sf,MPI_Datatype unit,const void *rootdata,void *leafdata) 112795fce210SBarry Smith { 112895fce210SBarry Smith PetscErrorCode ierr; 112995fce210SBarry Smith 113095fce210SBarry Smith PetscFunctionBegin; 113195fce210SBarry Smith PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 113295fce210SBarry Smith ierr = PetscSFSetUp(sf);CHKERRQ(ierr); 113329046d53SLisandro Dalcin ierr = PetscLogEventBegin(PETSCSF_BcastEnd,sf,0,0,0);CHKERRQ(ierr); 113495fce210SBarry Smith ierr = (*sf->ops->BcastEnd)(sf,unit,rootdata,leafdata);CHKERRQ(ierr); 1135563ffbabSMatthew G. Knepley ierr = PetscLogEventEnd(PETSCSF_BcastEnd,sf,0,0,0);CHKERRQ(ierr); 113695fce210SBarry Smith PetscFunctionReturn(0); 113795fce210SBarry Smith } 113895fce210SBarry Smith 113995fce210SBarry Smith /*@C 11403482bfa8SJunchao Zhang PetscSFBcastAndOpBegin - begin pointwise broadcast with root value being reduced to leaf value, to be concluded with call to PetscSFBcastAndOpEnd() 11413482bfa8SJunchao Zhang 11423482bfa8SJunchao Zhang Collective on PetscSF 11433482bfa8SJunchao Zhang 11443482bfa8SJunchao Zhang Input Arguments: 11453482bfa8SJunchao Zhang + sf - star forest on which to communicate 11463482bfa8SJunchao Zhang . unit - data type associated with each node 11473482bfa8SJunchao Zhang . rootdata - buffer to broadcast 11483482bfa8SJunchao Zhang - op - operation to use for reduction 11493482bfa8SJunchao Zhang 11503482bfa8SJunchao Zhang Output Arguments: 11513482bfa8SJunchao Zhang . leafdata - buffer to be reduced with values from each leaf's respective root 11523482bfa8SJunchao Zhang 11533482bfa8SJunchao Zhang Level: intermediate 11543482bfa8SJunchao Zhang 11553482bfa8SJunchao Zhang .seealso: PetscSFBcastAndOpEnd(), PetscSFBcastBegin(), PetscSFBcastEnd() 11563482bfa8SJunchao Zhang @*/ 11573482bfa8SJunchao Zhang PetscErrorCode PetscSFBcastAndOpBegin(PetscSF sf,MPI_Datatype unit,const void *rootdata,void *leafdata,MPI_Op op) 11583482bfa8SJunchao Zhang { 11593482bfa8SJunchao Zhang PetscErrorCode ierr; 11603482bfa8SJunchao Zhang 11613482bfa8SJunchao Zhang PetscFunctionBegin; 11623482bfa8SJunchao Zhang PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 11633482bfa8SJunchao Zhang ierr = PetscSFSetUp(sf);CHKERRQ(ierr); 11643482bfa8SJunchao Zhang ierr = PetscLogEventBegin(PETSCSF_BcastAndOpBegin,sf,0,0,0);CHKERRQ(ierr); 11653482bfa8SJunchao Zhang ierr = (*sf->ops->BcastAndOpBegin)(sf,unit,rootdata,leafdata,op);CHKERRQ(ierr); 11663482bfa8SJunchao Zhang ierr = PetscLogEventEnd(PETSCSF_BcastAndOpBegin,sf,0,0,0);CHKERRQ(ierr); 11673482bfa8SJunchao Zhang PetscFunctionReturn(0); 11683482bfa8SJunchao Zhang } 11693482bfa8SJunchao Zhang 11703482bfa8SJunchao Zhang /*@C 11713482bfa8SJunchao Zhang PetscSFBcastAndOpEnd - end a broadcast & reduce operation started with PetscSFBcastAndOpBegin() 11723482bfa8SJunchao Zhang 11733482bfa8SJunchao Zhang Collective 11743482bfa8SJunchao Zhang 11753482bfa8SJunchao Zhang Input Arguments: 11763482bfa8SJunchao Zhang + sf - star forest 11773482bfa8SJunchao Zhang . unit - data type 11783482bfa8SJunchao Zhang . rootdata - buffer to broadcast 11793482bfa8SJunchao Zhang - op - operation to use for reduction 11803482bfa8SJunchao Zhang 11813482bfa8SJunchao Zhang Output Arguments: 11823482bfa8SJunchao Zhang . leafdata - buffer to be reduced with values from each leaf's respective root 11833482bfa8SJunchao Zhang 11843482bfa8SJunchao Zhang Level: intermediate 11853482bfa8SJunchao Zhang 11863482bfa8SJunchao Zhang .seealso: PetscSFSetGraph(), PetscSFReduceEnd() 11873482bfa8SJunchao Zhang @*/ 11883482bfa8SJunchao Zhang PetscErrorCode PetscSFBcastAndOpEnd(PetscSF sf,MPI_Datatype unit,const void *rootdata,void *leafdata,MPI_Op op) 11893482bfa8SJunchao Zhang { 11903482bfa8SJunchao Zhang PetscErrorCode ierr; 11913482bfa8SJunchao Zhang 11923482bfa8SJunchao Zhang PetscFunctionBegin; 11933482bfa8SJunchao Zhang PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 11943482bfa8SJunchao Zhang ierr = PetscSFSetUp(sf);CHKERRQ(ierr); 11953482bfa8SJunchao Zhang ierr = PetscLogEventBegin(PETSCSF_BcastAndOpEnd,sf,0,0,0);CHKERRQ(ierr); 11963482bfa8SJunchao Zhang ierr = (*sf->ops->BcastAndOpEnd)(sf,unit,rootdata,leafdata,op);CHKERRQ(ierr); 11973482bfa8SJunchao Zhang ierr = PetscLogEventEnd(PETSCSF_BcastAndOpEnd,sf,0,0,0);CHKERRQ(ierr); 11983482bfa8SJunchao Zhang PetscFunctionReturn(0); 11993482bfa8SJunchao Zhang } 12003482bfa8SJunchao Zhang 12013482bfa8SJunchao Zhang /*@C 120295fce210SBarry Smith PetscSFReduceBegin - begin reduction of leafdata into rootdata, to be completed with call to PetscSFReduceEnd() 120395fce210SBarry Smith 120495fce210SBarry Smith Collective 120595fce210SBarry Smith 120695fce210SBarry Smith Input Arguments: 120795fce210SBarry Smith + sf - star forest 120895fce210SBarry Smith . unit - data type 120995fce210SBarry Smith . leafdata - values to reduce 121095fce210SBarry Smith - op - reduction operation 121195fce210SBarry Smith 121295fce210SBarry Smith Output Arguments: 121395fce210SBarry Smith . rootdata - result of reduction of values from all leaves of each root 121495fce210SBarry Smith 121595fce210SBarry Smith Level: intermediate 121695fce210SBarry Smith 121795fce210SBarry Smith .seealso: PetscSFBcastBegin() 121895fce210SBarry Smith @*/ 121995fce210SBarry Smith PetscErrorCode PetscSFReduceBegin(PetscSF sf,MPI_Datatype unit,const void *leafdata,void *rootdata,MPI_Op op) 122095fce210SBarry Smith { 122195fce210SBarry Smith PetscErrorCode ierr; 122295fce210SBarry Smith 122395fce210SBarry Smith PetscFunctionBegin; 122495fce210SBarry Smith PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 122595fce210SBarry Smith ierr = PetscSFSetUp(sf);CHKERRQ(ierr); 122629046d53SLisandro Dalcin ierr = PetscLogEventBegin(PETSCSF_ReduceBegin,sf,0,0,0);CHKERRQ(ierr); 122795fce210SBarry Smith ierr = (sf->ops->ReduceBegin)(sf,unit,leafdata,rootdata,op);CHKERRQ(ierr); 1228563ffbabSMatthew G. Knepley ierr = PetscLogEventEnd(PETSCSF_ReduceBegin,sf,0,0,0);CHKERRQ(ierr); 122995fce210SBarry Smith PetscFunctionReturn(0); 123095fce210SBarry Smith } 123195fce210SBarry Smith 123295fce210SBarry Smith /*@C 123395fce210SBarry Smith PetscSFReduceEnd - end a reduction operation started with PetscSFReduceBegin() 123495fce210SBarry Smith 123595fce210SBarry Smith Collective 123695fce210SBarry Smith 123795fce210SBarry Smith Input Arguments: 123895fce210SBarry Smith + sf - star forest 123995fce210SBarry Smith . unit - data type 124095fce210SBarry Smith . leafdata - values to reduce 124195fce210SBarry Smith - op - reduction operation 124295fce210SBarry Smith 124395fce210SBarry Smith Output Arguments: 124495fce210SBarry Smith . rootdata - result of reduction of values from all leaves of each root 124595fce210SBarry Smith 124695fce210SBarry Smith Level: intermediate 124795fce210SBarry Smith 124895fce210SBarry Smith .seealso: PetscSFSetGraph(), PetscSFBcastEnd() 124995fce210SBarry Smith @*/ 125095fce210SBarry Smith PetscErrorCode PetscSFReduceEnd(PetscSF sf,MPI_Datatype unit,const void *leafdata,void *rootdata,MPI_Op op) 125195fce210SBarry Smith { 125295fce210SBarry Smith PetscErrorCode ierr; 125395fce210SBarry Smith 125495fce210SBarry Smith PetscFunctionBegin; 125595fce210SBarry Smith PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 125695fce210SBarry Smith ierr = PetscSFSetUp(sf);CHKERRQ(ierr); 125729046d53SLisandro Dalcin ierr = PetscLogEventBegin(PETSCSF_ReduceEnd,sf,0,0,0);CHKERRQ(ierr); 125895fce210SBarry Smith ierr = (*sf->ops->ReduceEnd)(sf,unit,leafdata,rootdata,op);CHKERRQ(ierr); 1259563ffbabSMatthew G. Knepley ierr = PetscLogEventEnd(PETSCSF_ReduceEnd,sf,0,0,0);CHKERRQ(ierr); 126095fce210SBarry Smith PetscFunctionReturn(0); 126195fce210SBarry Smith } 126295fce210SBarry Smith 126395fce210SBarry Smith /*@C 126495fce210SBarry Smith PetscSFComputeDegreeBegin - begin computation of degree for each root vertex, to be completed with PetscSFComputeDegreeEnd() 126595fce210SBarry Smith 126695fce210SBarry Smith Collective 126795fce210SBarry Smith 126895fce210SBarry Smith Input Arguments: 126995fce210SBarry Smith . sf - star forest 127095fce210SBarry Smith 127195fce210SBarry Smith Output Arguments: 127295fce210SBarry Smith . degree - degree of each root vertex 127395fce210SBarry Smith 127495fce210SBarry Smith Level: advanced 127595fce210SBarry Smith 1276ffe67aa5SVáclav Hapla Notes: 1277ffe67aa5SVáclav Hapla The returned array is owned by PetscSF and automatically freed by PetscSFDestroy(). Hence no need to call PetscFree() on it. 1278ffe67aa5SVáclav Hapla 127995fce210SBarry Smith .seealso: PetscSFGatherBegin() 128095fce210SBarry Smith @*/ 128195fce210SBarry Smith PetscErrorCode PetscSFComputeDegreeBegin(PetscSF sf,const PetscInt **degree) 128295fce210SBarry Smith { 128395fce210SBarry Smith PetscErrorCode ierr; 128495fce210SBarry Smith 128595fce210SBarry Smith PetscFunctionBegin; 128695fce210SBarry Smith PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 128795fce210SBarry Smith PetscSFCheckGraphSet(sf,1); 128895fce210SBarry Smith PetscValidPointer(degree,2); 1289803bd9e8SMatthew G. Knepley if (!sf->degreeknown) { 129029046d53SLisandro Dalcin PetscInt i, nroots = sf->nroots, maxlocal = sf->maxleaf+1; /* TODO: We should use PetscSFGetLeafRange() */ 1291803bd9e8SMatthew G. Knepley if (sf->degree) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Calls to PetscSFComputeDegreeBegin() cannot be nested."); 129229046d53SLisandro Dalcin ierr = PetscMalloc1(nroots,&sf->degree);CHKERRQ(ierr); 129329046d53SLisandro Dalcin ierr = PetscMalloc1(PetscMax(maxlocal,1),&sf->degreetmp);CHKERRQ(ierr); /* allocate at least one entry, see check in PetscSFComputeDegreeEnd() */ 129429046d53SLisandro Dalcin for (i=0; i<nroots; i++) sf->degree[i] = 0; 12959837ea96SMatthew G. Knepley for (i=0; i<maxlocal; i++) sf->degreetmp[i] = 1; 1296dbd2ff41SBarry Smith ierr = PetscSFReduceBegin(sf,MPIU_INT,sf->degreetmp,sf->degree,MPI_SUM);CHKERRQ(ierr); 129795fce210SBarry Smith } 129895fce210SBarry Smith *degree = NULL; 129995fce210SBarry Smith PetscFunctionReturn(0); 130095fce210SBarry Smith } 130195fce210SBarry Smith 130295fce210SBarry Smith /*@C 130395fce210SBarry Smith PetscSFComputeDegreeEnd - complete computation of degree for each root vertex, started with PetscSFComputeDegreeBegin() 130495fce210SBarry Smith 130595fce210SBarry Smith Collective 130695fce210SBarry Smith 130795fce210SBarry Smith Input Arguments: 130895fce210SBarry Smith . sf - star forest 130995fce210SBarry Smith 131095fce210SBarry Smith Output Arguments: 131195fce210SBarry Smith . degree - degree of each root vertex 131295fce210SBarry Smith 131395fce210SBarry Smith Level: developer 131495fce210SBarry Smith 1315ffe67aa5SVáclav Hapla Notes: 1316ffe67aa5SVáclav Hapla The returned array is owned by PetscSF and automatically freed by PetscSFDestroy(). Hence no need to call PetscFree() on it. 1317ffe67aa5SVáclav Hapla 131895fce210SBarry Smith .seealso: 131995fce210SBarry Smith @*/ 132095fce210SBarry Smith PetscErrorCode PetscSFComputeDegreeEnd(PetscSF sf,const PetscInt **degree) 132195fce210SBarry Smith { 132295fce210SBarry Smith PetscErrorCode ierr; 132395fce210SBarry Smith 132495fce210SBarry Smith PetscFunctionBegin; 132595fce210SBarry Smith PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 132695fce210SBarry Smith PetscSFCheckGraphSet(sf,1); 132729046d53SLisandro Dalcin PetscValidPointer(degree,2); 132895fce210SBarry Smith if (!sf->degreeknown) { 132929046d53SLisandro Dalcin if (!sf->degreetmp) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Must call PetscSFComputeDegreeBegin() before PetscSFComputeDegreeEnd()"); 1330dbd2ff41SBarry Smith ierr = PetscSFReduceEnd(sf,MPIU_INT,sf->degreetmp,sf->degree,MPI_SUM);CHKERRQ(ierr); 133195fce210SBarry Smith ierr = PetscFree(sf->degreetmp);CHKERRQ(ierr); 133295fce210SBarry Smith sf->degreeknown = PETSC_TRUE; 133395fce210SBarry Smith } 133495fce210SBarry Smith *degree = sf->degree; 133595fce210SBarry Smith PetscFunctionReturn(0); 133695fce210SBarry Smith } 133795fce210SBarry Smith 1338673100f5SVaclav Hapla 1339673100f5SVaclav Hapla /*@C 134066dfcd1aSVaclav Hapla PetscSFComputeMultiRootOriginalNumbering - Returns original numbering of multi-roots (roots of multi-SF returned by PetscSFGetMultiSF()). 134166dfcd1aSVaclav Hapla Each multi-root is assigned index of the corresponding original root. 1342673100f5SVaclav Hapla 1343673100f5SVaclav Hapla Collective 1344673100f5SVaclav Hapla 1345673100f5SVaclav Hapla Input Arguments: 1346673100f5SVaclav Hapla + sf - star forest 1347673100f5SVaclav Hapla - degree - degree of each root vertex, computed with PetscSFComputeDegreeBegin()/PetscSFComputeDegreeEnd() 1348673100f5SVaclav Hapla 1349673100f5SVaclav Hapla Output Arguments: 135066dfcd1aSVaclav Hapla + nMultiRoots - (optional) number of multi-roots (roots of multi-SF) 135166dfcd1aSVaclav Hapla - multiRootsOrigNumbering - original indices of multi-roots; length of this array is nMultiRoots 1352673100f5SVaclav Hapla 1353673100f5SVaclav Hapla Level: developer 1354673100f5SVaclav Hapla 1355ffe67aa5SVáclav Hapla Notes: 1356ffe67aa5SVáclav Hapla The returned array multiRootsOrigNumbering is newly allocated and should be destroyed with PetscFree() when no longer needed. 1357ffe67aa5SVáclav Hapla 1358673100f5SVaclav Hapla .seealso: PetscSFComputeDegreeBegin(), PetscSFComputeDegreeEnd(), PetscSFGetMultiSF() 1359673100f5SVaclav Hapla @*/ 136066dfcd1aSVaclav Hapla PetscErrorCode PetscSFComputeMultiRootOriginalNumbering(PetscSF sf, const PetscInt degree[], PetscInt *nMultiRoots, PetscInt *multiRootsOrigNumbering[]) 1361673100f5SVaclav Hapla { 1362673100f5SVaclav Hapla PetscSF msf; 1363673100f5SVaclav Hapla PetscInt i, j, k, nroots, nmroots; 1364673100f5SVaclav Hapla PetscErrorCode ierr; 1365673100f5SVaclav Hapla 1366673100f5SVaclav Hapla PetscFunctionBegin; 1367673100f5SVaclav Hapla PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 1368673100f5SVaclav Hapla ierr = PetscSFGetGraph(sf, &nroots, NULL, NULL, NULL);CHKERRQ(ierr); 136929328920SVaclav Hapla if (nroots) PetscValidIntPointer(degree,2); 137066dfcd1aSVaclav Hapla if (nMultiRoots) PetscValidIntPointer(nMultiRoots,3); 137166dfcd1aSVaclav Hapla PetscValidPointer(multiRootsOrigNumbering,4); 1372673100f5SVaclav Hapla ierr = PetscSFGetMultiSF(sf,&msf);CHKERRQ(ierr); 1373673100f5SVaclav Hapla ierr = PetscSFGetGraph(msf, &nmroots, NULL, NULL, NULL);CHKERRQ(ierr); 137466dfcd1aSVaclav Hapla ierr = PetscMalloc1(nmroots, multiRootsOrigNumbering);CHKERRQ(ierr); 1375673100f5SVaclav Hapla for (i=0,j=0,k=0; i<nroots; i++) { 1376673100f5SVaclav Hapla if (!degree[i]) continue; 1377673100f5SVaclav Hapla for (j=0; j<degree[i]; j++,k++) { 137866dfcd1aSVaclav Hapla (*multiRootsOrigNumbering)[k] = i; 1379673100f5SVaclav Hapla } 1380673100f5SVaclav Hapla } 1381673100f5SVaclav Hapla #if defined(PETSC_USE_DEBUG) 1382673100f5SVaclav Hapla if (PetscUnlikely(k != nmroots)) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"sanity check fail"); 1383673100f5SVaclav Hapla #endif 138466dfcd1aSVaclav Hapla if (nMultiRoots) *nMultiRoots = nmroots; 1385673100f5SVaclav Hapla PetscFunctionReturn(0); 1386673100f5SVaclav Hapla } 1387673100f5SVaclav Hapla 138895fce210SBarry Smith /*@C 138995fce210SBarry Smith PetscSFFetchAndOpBegin - begin operation that fetches values from root and updates atomically by applying operation using my leaf value, to be completed with PetscSFFetchAndOpEnd() 139095fce210SBarry Smith 139195fce210SBarry Smith Collective 139295fce210SBarry Smith 139395fce210SBarry Smith Input Arguments: 139495fce210SBarry Smith + sf - star forest 139595fce210SBarry Smith . unit - data type 139695fce210SBarry Smith . leafdata - leaf values to use in reduction 139795fce210SBarry Smith - op - operation to use for reduction 139895fce210SBarry Smith 139995fce210SBarry Smith Output Arguments: 140095fce210SBarry Smith + rootdata - root values to be updated, input state is seen by first process to perform an update 140195fce210SBarry Smith - leafupdate - state at each leaf's respective root immediately prior to my atomic update 140295fce210SBarry Smith 140395fce210SBarry Smith Level: advanced 140495fce210SBarry Smith 140595fce210SBarry Smith Note: 140695fce210SBarry Smith The update is only atomic at the granularity provided by the hardware. Different roots referenced by the same process 140795fce210SBarry Smith might be updated in a different order. Furthermore, if a composite type is used for the unit datatype, atomicity is 140895fce210SBarry Smith not guaranteed across the whole vertex. Therefore, this function is mostly only used with primitive types such as 140995fce210SBarry Smith integers. 141095fce210SBarry Smith 141195fce210SBarry Smith .seealso: PetscSFComputeDegreeBegin(), PetscSFReduceBegin(), PetscSFSetGraph() 141295fce210SBarry Smith @*/ 141395fce210SBarry Smith PetscErrorCode PetscSFFetchAndOpBegin(PetscSF sf,MPI_Datatype unit,void *rootdata,const void *leafdata,void *leafupdate,MPI_Op op) 141495fce210SBarry Smith { 141595fce210SBarry Smith PetscErrorCode ierr; 141695fce210SBarry Smith 141795fce210SBarry Smith PetscFunctionBegin; 141895fce210SBarry Smith PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 141995fce210SBarry Smith ierr = PetscSFSetUp(sf);CHKERRQ(ierr); 142029046d53SLisandro Dalcin ierr = PetscLogEventBegin(PETSCSF_FetchAndOpBegin,sf,0,0,0);CHKERRQ(ierr); 142195fce210SBarry Smith ierr = (*sf->ops->FetchAndOpBegin)(sf,unit,rootdata,leafdata,leafupdate,op);CHKERRQ(ierr); 1422563ffbabSMatthew G. Knepley ierr = PetscLogEventEnd(PETSCSF_FetchAndOpBegin,sf,0,0,0);CHKERRQ(ierr); 142395fce210SBarry Smith PetscFunctionReturn(0); 142495fce210SBarry Smith } 142595fce210SBarry Smith 142695fce210SBarry Smith /*@C 142795fce210SBarry Smith PetscSFFetchAndOpEnd - end operation started in matching call to PetscSFFetchAndOpBegin() to fetch values from roots and update atomically by applying operation using my leaf value 142895fce210SBarry Smith 142995fce210SBarry Smith Collective 143095fce210SBarry Smith 143195fce210SBarry Smith Input Arguments: 143295fce210SBarry Smith + sf - star forest 143395fce210SBarry Smith . unit - data type 143495fce210SBarry Smith . leafdata - leaf values to use in reduction 143595fce210SBarry Smith - op - operation to use for reduction 143695fce210SBarry Smith 143795fce210SBarry Smith Output Arguments: 143895fce210SBarry Smith + rootdata - root values to be updated, input state is seen by first process to perform an update 143995fce210SBarry Smith - leafupdate - state at each leaf's respective root immediately prior to my atomic update 144095fce210SBarry Smith 144195fce210SBarry Smith Level: advanced 144295fce210SBarry Smith 144395fce210SBarry Smith .seealso: PetscSFComputeDegreeEnd(), PetscSFReduceEnd(), PetscSFSetGraph() 144495fce210SBarry Smith @*/ 144595fce210SBarry Smith PetscErrorCode PetscSFFetchAndOpEnd(PetscSF sf,MPI_Datatype unit,void *rootdata,const void *leafdata,void *leafupdate,MPI_Op op) 144695fce210SBarry Smith { 144795fce210SBarry Smith PetscErrorCode ierr; 144895fce210SBarry Smith 144995fce210SBarry Smith PetscFunctionBegin; 145095fce210SBarry Smith PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 145195fce210SBarry Smith ierr = PetscSFSetUp(sf);CHKERRQ(ierr); 145229046d53SLisandro Dalcin ierr = PetscLogEventBegin(PETSCSF_FetchAndOpEnd,sf,0,0,0);CHKERRQ(ierr); 145395fce210SBarry Smith ierr = (*sf->ops->FetchAndOpEnd)(sf,unit,rootdata,leafdata,leafupdate,op);CHKERRQ(ierr); 1454563ffbabSMatthew G. Knepley ierr = PetscLogEventEnd(PETSCSF_FetchAndOpEnd,sf,0,0,0);CHKERRQ(ierr); 145595fce210SBarry Smith PetscFunctionReturn(0); 145695fce210SBarry Smith } 145795fce210SBarry Smith 145895fce210SBarry Smith /*@C 145995fce210SBarry Smith PetscSFGatherBegin - begin pointwise gather of all leaves into multi-roots, to be completed with PetscSFGatherEnd() 146095fce210SBarry Smith 146195fce210SBarry Smith Collective 146295fce210SBarry Smith 146395fce210SBarry Smith Input Arguments: 146495fce210SBarry Smith + sf - star forest 146595fce210SBarry Smith . unit - data type 146695fce210SBarry Smith - leafdata - leaf data to gather to roots 146795fce210SBarry Smith 146895fce210SBarry Smith Output Argument: 146995fce210SBarry Smith . multirootdata - root buffer to gather into, amount of space per root is equal to its degree 147095fce210SBarry Smith 147195fce210SBarry Smith Level: intermediate 147295fce210SBarry Smith 147395fce210SBarry Smith .seealso: PetscSFComputeDegreeBegin(), PetscSFScatterBegin() 147495fce210SBarry Smith @*/ 147595fce210SBarry Smith PetscErrorCode PetscSFGatherBegin(PetscSF sf,MPI_Datatype unit,const void *leafdata,void *multirootdata) 147695fce210SBarry Smith { 147795fce210SBarry Smith PetscErrorCode ierr; 147895fce210SBarry Smith PetscSF multi; 147995fce210SBarry Smith 148095fce210SBarry Smith PetscFunctionBegin; 148195fce210SBarry Smith PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 148229046d53SLisandro Dalcin ierr = PetscSFSetUp(sf);CHKERRQ(ierr); 148395fce210SBarry Smith ierr = PetscSFGetMultiSF(sf,&multi);CHKERRQ(ierr); 14848bfbc91cSJed Brown ierr = PetscSFReduceBegin(multi,unit,leafdata,multirootdata,MPIU_REPLACE);CHKERRQ(ierr); 148595fce210SBarry Smith PetscFunctionReturn(0); 148695fce210SBarry Smith } 148795fce210SBarry Smith 148895fce210SBarry Smith /*@C 148995fce210SBarry Smith PetscSFGatherEnd - ends pointwise gather operation that was started with PetscSFGatherBegin() 149095fce210SBarry Smith 149195fce210SBarry Smith Collective 149295fce210SBarry Smith 149395fce210SBarry Smith Input Arguments: 149495fce210SBarry Smith + sf - star forest 149595fce210SBarry Smith . unit - data type 149695fce210SBarry Smith - leafdata - leaf data to gather to roots 149795fce210SBarry Smith 149895fce210SBarry Smith Output Argument: 149995fce210SBarry Smith . multirootdata - root buffer to gather into, amount of space per root is equal to its degree 150095fce210SBarry Smith 150195fce210SBarry Smith Level: intermediate 150295fce210SBarry Smith 150395fce210SBarry Smith .seealso: PetscSFComputeDegreeEnd(), PetscSFScatterEnd() 150495fce210SBarry Smith @*/ 150595fce210SBarry Smith PetscErrorCode PetscSFGatherEnd(PetscSF sf,MPI_Datatype unit,const void *leafdata,void *multirootdata) 150695fce210SBarry Smith { 150795fce210SBarry Smith PetscErrorCode ierr; 150895fce210SBarry Smith PetscSF multi; 150995fce210SBarry Smith 151095fce210SBarry Smith PetscFunctionBegin; 151195fce210SBarry Smith PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 151295fce210SBarry Smith ierr = PetscSFSetUp(sf);CHKERRQ(ierr); 151395fce210SBarry Smith ierr = PetscSFGetMultiSF(sf,&multi);CHKERRQ(ierr); 15148bfbc91cSJed Brown ierr = PetscSFReduceEnd(multi,unit,leafdata,multirootdata,MPIU_REPLACE);CHKERRQ(ierr); 151595fce210SBarry Smith PetscFunctionReturn(0); 151695fce210SBarry Smith } 151795fce210SBarry Smith 151895fce210SBarry Smith /*@C 151995fce210SBarry Smith PetscSFScatterBegin - begin pointwise scatter operation from multi-roots to leaves, to be completed with PetscSFScatterEnd() 152095fce210SBarry Smith 152195fce210SBarry Smith Collective 152295fce210SBarry Smith 152395fce210SBarry Smith Input Arguments: 152495fce210SBarry Smith + sf - star forest 152595fce210SBarry Smith . unit - data type 152695fce210SBarry Smith - multirootdata - root buffer to send to each leaf, one unit of data per leaf 152795fce210SBarry Smith 152895fce210SBarry Smith Output Argument: 152995fce210SBarry Smith . leafdata - leaf data to be update with personal data from each respective root 153095fce210SBarry Smith 153195fce210SBarry Smith Level: intermediate 153295fce210SBarry Smith 153395fce210SBarry Smith .seealso: PetscSFComputeDegreeBegin(), PetscSFScatterBegin() 153495fce210SBarry Smith @*/ 153595fce210SBarry Smith PetscErrorCode PetscSFScatterBegin(PetscSF sf,MPI_Datatype unit,const void *multirootdata,void *leafdata) 153695fce210SBarry Smith { 153795fce210SBarry Smith PetscErrorCode ierr; 153895fce210SBarry Smith PetscSF multi; 153995fce210SBarry Smith 154095fce210SBarry Smith PetscFunctionBegin; 154195fce210SBarry Smith PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 154295fce210SBarry Smith ierr = PetscSFSetUp(sf);CHKERRQ(ierr); 154395fce210SBarry Smith ierr = PetscSFGetMultiSF(sf,&multi);CHKERRQ(ierr); 154495fce210SBarry Smith ierr = PetscSFBcastBegin(multi,unit,multirootdata,leafdata);CHKERRQ(ierr); 154595fce210SBarry Smith PetscFunctionReturn(0); 154695fce210SBarry Smith } 154795fce210SBarry Smith 154895fce210SBarry Smith /*@C 154995fce210SBarry Smith PetscSFScatterEnd - ends pointwise scatter operation that was started with PetscSFScatterBegin() 155095fce210SBarry Smith 155195fce210SBarry Smith Collective 155295fce210SBarry Smith 155395fce210SBarry Smith Input Arguments: 155495fce210SBarry Smith + sf - star forest 155595fce210SBarry Smith . unit - data type 155695fce210SBarry Smith - multirootdata - root buffer to send to each leaf, one unit of data per leaf 155795fce210SBarry Smith 155895fce210SBarry Smith Output Argument: 155995fce210SBarry Smith . leafdata - leaf data to be update with personal data from each respective root 156095fce210SBarry Smith 156195fce210SBarry Smith Level: intermediate 156295fce210SBarry Smith 156395fce210SBarry Smith .seealso: PetscSFComputeDegreeEnd(), PetscSFScatterEnd() 156495fce210SBarry Smith @*/ 156595fce210SBarry Smith PetscErrorCode PetscSFScatterEnd(PetscSF sf,MPI_Datatype unit,const void *multirootdata,void *leafdata) 156695fce210SBarry Smith { 156795fce210SBarry Smith PetscErrorCode ierr; 156895fce210SBarry Smith PetscSF multi; 156995fce210SBarry Smith 157095fce210SBarry Smith PetscFunctionBegin; 157195fce210SBarry Smith PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 157295fce210SBarry Smith ierr = PetscSFSetUp(sf);CHKERRQ(ierr); 157395fce210SBarry Smith ierr = PetscSFGetMultiSF(sf,&multi);CHKERRQ(ierr); 157495fce210SBarry Smith ierr = PetscSFBcastEnd(multi,unit,multirootdata,leafdata);CHKERRQ(ierr); 157595fce210SBarry Smith PetscFunctionReturn(0); 157695fce210SBarry Smith } 1577a7b3aa13SAta Mesgarnejad 1578a7b3aa13SAta Mesgarnejad /*@ 1579a7b3aa13SAta Mesgarnejad PetscSFCompose - Compose a new PetscSF equivalent to action to PetscSFs 1580a7b3aa13SAta Mesgarnejad 1581a7b3aa13SAta Mesgarnejad Input Parameters: 1582a7b3aa13SAta Mesgarnejad + sfA - The first PetscSF 1583a7b3aa13SAta Mesgarnejad - sfB - The second PetscSF 1584a7b3aa13SAta Mesgarnejad 1585a7b3aa13SAta Mesgarnejad Output Parameters: 1586a7b3aa13SAta Mesgarnejad . sfBA - equvalent PetscSF for applying A then B 1587a7b3aa13SAta Mesgarnejad 1588a7b3aa13SAta Mesgarnejad Level: developer 1589a7b3aa13SAta Mesgarnejad 1590a7b3aa13SAta Mesgarnejad .seealso: PetscSF, PetscSFGetGraph(), PetscSFSetGraph() 1591a7b3aa13SAta Mesgarnejad @*/ 1592a7b3aa13SAta Mesgarnejad PetscErrorCode PetscSFCompose(PetscSF sfA, PetscSF sfB, PetscSF *sfBA) 1593a7b3aa13SAta Mesgarnejad { 1594a7b3aa13SAta Mesgarnejad MPI_Comm comm; 1595a7b3aa13SAta Mesgarnejad const PetscSFNode *remotePointsA, *remotePointsB; 1596a7b3aa13SAta Mesgarnejad PetscSFNode *remotePointsBA; 1597a7b3aa13SAta Mesgarnejad const PetscInt *localPointsA, *localPointsB; 1598a7b3aa13SAta Mesgarnejad PetscInt numRootsA, numLeavesA, numRootsB, numLeavesB; 1599a7b3aa13SAta Mesgarnejad PetscErrorCode ierr; 1600a7b3aa13SAta Mesgarnejad 1601a7b3aa13SAta Mesgarnejad PetscFunctionBegin; 1602a7b3aa13SAta Mesgarnejad PetscValidHeaderSpecific(sfA, PETSCSF_CLASSID, 1); 160329046d53SLisandro Dalcin PetscSFCheckGraphSet(sfA, 1); 160429046d53SLisandro Dalcin PetscValidHeaderSpecific(sfB, PETSCSF_CLASSID, 2); 160529046d53SLisandro Dalcin PetscSFCheckGraphSet(sfB, 2); 160629046d53SLisandro Dalcin PetscValidPointer(sfBA, 3); 1607a7b3aa13SAta Mesgarnejad ierr = PetscObjectGetComm((PetscObject) sfA, &comm);CHKERRQ(ierr); 1608a7b3aa13SAta Mesgarnejad ierr = PetscSFGetGraph(sfA, &numRootsA, &numLeavesA, &localPointsA, &remotePointsA);CHKERRQ(ierr); 1609a7b3aa13SAta Mesgarnejad ierr = PetscSFGetGraph(sfB, &numRootsB, &numLeavesB, &localPointsB, &remotePointsB);CHKERRQ(ierr); 1610a7b3aa13SAta Mesgarnejad ierr = PetscMalloc1(numLeavesB, &remotePointsBA);CHKERRQ(ierr); 1611a7b3aa13SAta Mesgarnejad ierr = PetscSFBcastBegin(sfB, MPIU_2INT, remotePointsA, remotePointsBA);CHKERRQ(ierr); 1612a7b3aa13SAta Mesgarnejad ierr = PetscSFBcastEnd(sfB, MPIU_2INT, remotePointsA, remotePointsBA);CHKERRQ(ierr); 1613a7b3aa13SAta Mesgarnejad ierr = PetscSFCreate(comm, sfBA);CHKERRQ(ierr); 1614a7b3aa13SAta Mesgarnejad ierr = PetscSFSetGraph(*sfBA, numRootsA, numLeavesB, localPointsB, PETSC_COPY_VALUES, remotePointsBA, PETSC_OWN_POINTER);CHKERRQ(ierr); 1615a7b3aa13SAta Mesgarnejad PetscFunctionReturn(0); 1616a7b3aa13SAta Mesgarnejad } 1617