1af0996ceSBarry Smith #include <petsc/private/sfimpl.h> /*I "petscsf.h" I*/ 295fce210SBarry Smith #include <petscctable.h> 395fce210SBarry Smith 4563ffbabSMatthew G. Knepley /* Logging support */ 5563ffbabSMatthew G. Knepley PetscLogEvent PETSCSF_SetGraph, PETSCSF_BcastBegin, PETSCSF_BcastEnd, PETSCSF_ReduceBegin, PETSCSF_ReduceEnd, PETSCSF_FetchAndOpBegin, PETSCSF_FetchAndOpEnd; 6563ffbabSMatthew G. Knepley 795fce210SBarry Smith #if defined(PETSC_USE_DEBUG) 895fce210SBarry Smith # define PetscSFCheckGraphSet(sf,arg) do { \ 995fce210SBarry Smith if (PetscUnlikely(!(sf)->graphset)) \ 1095fce210SBarry Smith SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Must call PetscSFSetGraph() on argument %D \"%s\" before %s()",(arg),#sf,PETSC_FUNCTION_NAME); \ 1195fce210SBarry Smith } while (0) 1295fce210SBarry Smith #else 1395fce210SBarry Smith # define PetscSFCheckGraphSet(sf,arg) do {} while (0) 1495fce210SBarry Smith #endif 1595fce210SBarry Smith 1695fce210SBarry Smith const char *const PetscSFDuplicateOptions[] = {"CONFONLY","RANKS","GRAPH","PetscSFDuplicateOption","PETSCSF_DUPLICATE_",0}; 1795fce210SBarry Smith 1895fce210SBarry Smith /*@C 1995fce210SBarry Smith PetscSFCreate - create a star forest communication context 2095fce210SBarry Smith 2195fce210SBarry Smith Not Collective 2295fce210SBarry Smith 2395fce210SBarry Smith Input Arguments: 2495fce210SBarry Smith . comm - communicator on which the star forest will operate 2595fce210SBarry Smith 2695fce210SBarry Smith Output Arguments: 2795fce210SBarry Smith . sf - new star forest context 2895fce210SBarry Smith 2995fce210SBarry Smith Level: intermediate 3095fce210SBarry Smith 3195fce210SBarry Smith .seealso: PetscSFSetGraph(), PetscSFDestroy() 3295fce210SBarry Smith @*/ 3395fce210SBarry Smith PetscErrorCode PetscSFCreate(MPI_Comm comm,PetscSF *sf) 3495fce210SBarry Smith { 3595fce210SBarry Smith PetscErrorCode ierr; 3695fce210SBarry Smith PetscSF b; 3795fce210SBarry Smith 3895fce210SBarry Smith PetscFunctionBegin; 3995fce210SBarry Smith PetscValidPointer(sf,2); 40607a6623SBarry Smith ierr = PetscSFInitializePackage();CHKERRQ(ierr); 4195fce210SBarry Smith 4273107ff1SLisandro Dalcin ierr = PetscHeaderCreate(b,PETSCSF_CLASSID,"PetscSF","Star Forest","PetscSF",comm,PetscSFDestroy,PetscSFView);CHKERRQ(ierr); 4395fce210SBarry Smith 4495fce210SBarry Smith b->nroots = -1; 4595fce210SBarry Smith b->nleaves = -1; 4695fce210SBarry Smith b->nranks = -1; 4795fce210SBarry Smith b->rankorder = PETSC_TRUE; 4895fce210SBarry Smith b->ingroup = MPI_GROUP_NULL; 4995fce210SBarry Smith b->outgroup = MPI_GROUP_NULL; 5095fce210SBarry Smith b->graphset = PETSC_FALSE; 5195fce210SBarry Smith 5295fce210SBarry Smith *sf = b; 5395fce210SBarry Smith PetscFunctionReturn(0); 5495fce210SBarry Smith } 5595fce210SBarry Smith 5695fce210SBarry Smith /*@C 5795fce210SBarry Smith PetscSFReset - Reset a star forest so that different sizes or neighbors can be used 5895fce210SBarry Smith 5995fce210SBarry Smith Collective 6095fce210SBarry Smith 6195fce210SBarry Smith Input Arguments: 6295fce210SBarry Smith . sf - star forest 6395fce210SBarry Smith 6495fce210SBarry Smith Level: advanced 6595fce210SBarry Smith 6695fce210SBarry Smith .seealso: PetscSFCreate(), PetscSFSetGraph(), PetscSFDestroy() 6795fce210SBarry Smith @*/ 6895fce210SBarry Smith PetscErrorCode PetscSFReset(PetscSF sf) 6995fce210SBarry Smith { 7095fce210SBarry Smith PetscErrorCode ierr; 7195fce210SBarry Smith 7295fce210SBarry Smith PetscFunctionBegin; 7395fce210SBarry Smith PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 74*79715d56SJed Brown if (sf->ops->Reset) {ierr = (*sf->ops->Reset)(sf);CHKERRQ(ierr);} 7595fce210SBarry Smith sf->mine = NULL; 7695fce210SBarry Smith ierr = PetscFree(sf->mine_alloc);CHKERRQ(ierr); 7795fce210SBarry Smith sf->remote = NULL; 7895fce210SBarry Smith ierr = PetscFree(sf->remote_alloc);CHKERRQ(ierr); 7995fce210SBarry Smith ierr = PetscFree4(sf->ranks,sf->roffset,sf->rmine,sf->rremote);CHKERRQ(ierr); 8095fce210SBarry Smith ierr = PetscFree(sf->degree);CHKERRQ(ierr); 8195fce210SBarry Smith if (sf->ingroup != MPI_GROUP_NULL) {ierr = MPI_Group_free(&sf->ingroup);CHKERRQ(ierr);} 8295fce210SBarry Smith if (sf->outgroup != MPI_GROUP_NULL) {ierr = MPI_Group_free(&sf->outgroup);CHKERRQ(ierr);} 8395fce210SBarry Smith ierr = PetscSFDestroy(&sf->multi);CHKERRQ(ierr); 8495fce210SBarry Smith sf->graphset = PETSC_FALSE; 8595fce210SBarry Smith sf->setupcalled = PETSC_FALSE; 8695fce210SBarry Smith PetscFunctionReturn(0); 8795fce210SBarry Smith } 8895fce210SBarry Smith 8995fce210SBarry Smith /*@C 9095fce210SBarry Smith PetscSFSetType - set the PetscSF communication implementation 9195fce210SBarry Smith 9295fce210SBarry Smith Collective on PetscSF 9395fce210SBarry Smith 9495fce210SBarry Smith Input Parameters: 9595fce210SBarry Smith + sf - the PetscSF context 9695fce210SBarry Smith - type - a known method 9795fce210SBarry Smith 9895fce210SBarry Smith Options Database Key: 9995fce210SBarry Smith . -sf_type <type> - Sets the method; use -help for a list 10095fce210SBarry Smith of available methods (for instance, window, pt2pt, neighbor) 10195fce210SBarry Smith 10295fce210SBarry Smith Notes: 10395fce210SBarry Smith See "include/petscsf.h" for available methods (for instance) 10495fce210SBarry Smith + PETSCSFWINDOW - MPI-2/3 one-sided 10595fce210SBarry Smith - PETSCSFBASIC - basic implementation using MPI-1 two-sided 10695fce210SBarry Smith 10795fce210SBarry Smith Level: intermediate 10895fce210SBarry Smith 10995fce210SBarry Smith .keywords: PetscSF, set, type 11095fce210SBarry Smith 11195fce210SBarry Smith .seealso: PetscSFType, PetscSFCreate() 11295fce210SBarry Smith @*/ 11395fce210SBarry Smith PetscErrorCode PetscSFSetType(PetscSF sf,PetscSFType type) 11495fce210SBarry Smith { 11595fce210SBarry Smith PetscErrorCode ierr,(*r)(PetscSF); 11695fce210SBarry Smith PetscBool match; 11795fce210SBarry Smith 11895fce210SBarry Smith PetscFunctionBegin; 11995fce210SBarry Smith PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 12095fce210SBarry Smith PetscValidCharPointer(type,2); 12195fce210SBarry Smith 12295fce210SBarry Smith ierr = PetscObjectTypeCompare((PetscObject)sf,type,&match);CHKERRQ(ierr); 12395fce210SBarry Smith if (match) PetscFunctionReturn(0); 12495fce210SBarry Smith 125adc40e5bSBarry Smith ierr = PetscFunctionListFind(PetscSFList,type,&r);CHKERRQ(ierr); 12695fce210SBarry Smith if (!r) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_UNKNOWN_TYPE,"Unable to find requested PetscSF type %s",type); 12795fce210SBarry Smith /* Destroy the previous private PetscSF context */ 12895fce210SBarry Smith if (sf->ops->Destroy) { 12995fce210SBarry Smith ierr = (*(sf)->ops->Destroy)(sf);CHKERRQ(ierr); 13095fce210SBarry Smith } 13195fce210SBarry Smith ierr = PetscMemzero(sf->ops,sizeof(*sf->ops));CHKERRQ(ierr); 13295fce210SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)sf,type);CHKERRQ(ierr); 13395fce210SBarry Smith ierr = (*r)(sf);CHKERRQ(ierr); 13495fce210SBarry Smith PetscFunctionReturn(0); 13595fce210SBarry Smith } 13695fce210SBarry Smith 137d36d33e4SMatthew G. Knepley /*@ 13895fce210SBarry Smith PetscSFDestroy - destroy star forest 13995fce210SBarry Smith 14095fce210SBarry Smith Collective 14195fce210SBarry Smith 14295fce210SBarry Smith Input Arguments: 14395fce210SBarry Smith . sf - address of star forest 14495fce210SBarry Smith 14595fce210SBarry Smith Level: intermediate 14695fce210SBarry Smith 14795fce210SBarry Smith .seealso: PetscSFCreate(), PetscSFReset() 14895fce210SBarry Smith @*/ 14995fce210SBarry Smith PetscErrorCode PetscSFDestroy(PetscSF *sf) 15095fce210SBarry Smith { 15195fce210SBarry Smith PetscErrorCode ierr; 15295fce210SBarry Smith 15395fce210SBarry Smith PetscFunctionBegin; 15495fce210SBarry Smith if (!*sf) PetscFunctionReturn(0); 15595fce210SBarry Smith PetscValidHeaderSpecific((*sf),PETSCSF_CLASSID,1); 15695fce210SBarry Smith if (--((PetscObject)(*sf))->refct > 0) {*sf = 0; PetscFunctionReturn(0);} 15795fce210SBarry Smith ierr = PetscSFReset(*sf);CHKERRQ(ierr); 15895fce210SBarry Smith if ((*sf)->ops->Destroy) {ierr = (*(*sf)->ops->Destroy)(*sf);CHKERRQ(ierr);} 15995fce210SBarry Smith ierr = PetscHeaderDestroy(sf);CHKERRQ(ierr); 16095fce210SBarry Smith PetscFunctionReturn(0); 16195fce210SBarry Smith } 16295fce210SBarry Smith 16395fce210SBarry Smith /*@ 16495fce210SBarry Smith PetscSFSetUp - set up communication structures 16595fce210SBarry Smith 16695fce210SBarry Smith Collective 16795fce210SBarry Smith 16895fce210SBarry Smith Input Arguments: 16995fce210SBarry Smith . sf - star forest communication object 17095fce210SBarry Smith 17195fce210SBarry Smith Level: beginner 17295fce210SBarry Smith 17395fce210SBarry Smith .seealso: PetscSFSetFromOptions(), PetscSFSetType() 17495fce210SBarry Smith @*/ 17595fce210SBarry Smith PetscErrorCode PetscSFSetUp(PetscSF sf) 17695fce210SBarry Smith { 17795fce210SBarry Smith PetscErrorCode ierr; 17895fce210SBarry Smith 17995fce210SBarry Smith PetscFunctionBegin; 18095fce210SBarry Smith if (sf->setupcalled) PetscFunctionReturn(0); 18195fce210SBarry Smith if (!((PetscObject)sf)->type_name) {ierr = PetscSFSetType(sf,PETSCSFBASIC);CHKERRQ(ierr);} 18295fce210SBarry Smith if (sf->ops->SetUp) {ierr = (*sf->ops->SetUp)(sf);CHKERRQ(ierr);} 18395fce210SBarry Smith sf->setupcalled = PETSC_TRUE; 18495fce210SBarry Smith PetscFunctionReturn(0); 18595fce210SBarry Smith } 18695fce210SBarry Smith 18795fce210SBarry Smith /*@C 18895fce210SBarry Smith PetscSFSetFromOptions - set PetscSF options using the options database 18995fce210SBarry Smith 19095fce210SBarry Smith Logically Collective 19195fce210SBarry Smith 19295fce210SBarry Smith Input Arguments: 19395fce210SBarry Smith . sf - star forest 19495fce210SBarry Smith 19595fce210SBarry Smith Options Database Keys: 19660263706SJed Brown + -sf_type - implementation type, see PetscSFSetType() 19760263706SJed Brown - -sf_rank_order - sort composite points for gathers and scatters in rank order, gathers are non-deterministic otherwise 19895fce210SBarry Smith 19995fce210SBarry Smith Level: intermediate 20095fce210SBarry Smith 20195fce210SBarry Smith .keywords: KSP, set, from, options, database 20295fce210SBarry Smith 20395fce210SBarry Smith .seealso: PetscSFWindowSetSyncType() 20495fce210SBarry Smith @*/ 20595fce210SBarry Smith PetscErrorCode PetscSFSetFromOptions(PetscSF sf) 20695fce210SBarry Smith { 20795fce210SBarry Smith PetscSFType deft; 20895fce210SBarry Smith char type[256]; 20995fce210SBarry Smith PetscErrorCode ierr; 21095fce210SBarry Smith PetscBool flg; 21195fce210SBarry Smith 21295fce210SBarry Smith PetscFunctionBegin; 21395fce210SBarry Smith PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 21495fce210SBarry Smith ierr = PetscObjectOptionsBegin((PetscObject)sf);CHKERRQ(ierr); 21595fce210SBarry Smith deft = ((PetscObject)sf)->type_name ? ((PetscObject)sf)->type_name : PETSCSFBASIC; 216a264d7a6SBarry Smith ierr = PetscOptionsFList("-sf_type","PetscSF implementation type","PetscSFSetType",PetscSFList,deft,type,256,&flg);CHKERRQ(ierr); 21795fce210SBarry Smith ierr = PetscSFSetType(sf,flg ? type : deft);CHKERRQ(ierr); 21895fce210SBarry Smith ierr = PetscOptionsBool("-sf_rank_order","sort composite points for gathers and scatters in rank order, gathers are non-deterministic otherwise","PetscSFSetRankOrder",sf->rankorder,&sf->rankorder,NULL);CHKERRQ(ierr); 219e55864a3SBarry Smith if (sf->ops->SetFromOptions) {ierr = (*sf->ops->SetFromOptions)(PetscOptionsObject,sf);CHKERRQ(ierr);} 22095fce210SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 22195fce210SBarry Smith PetscFunctionReturn(0); 22295fce210SBarry Smith } 22395fce210SBarry Smith 22495fce210SBarry Smith /*@C 22595fce210SBarry Smith PetscSFSetRankOrder - sort multi-points for gathers and scatters by rank order 22695fce210SBarry Smith 22795fce210SBarry Smith Logically Collective 22895fce210SBarry Smith 22995fce210SBarry Smith Input Arguments: 23095fce210SBarry Smith + sf - star forest 23195fce210SBarry Smith - flg - PETSC_TRUE to sort, PETSC_FALSE to skip sorting (lower setup cost, but non-deterministic) 23295fce210SBarry Smith 23395fce210SBarry Smith Level: advanced 23495fce210SBarry Smith 23595fce210SBarry Smith .seealso: PetscSFGatherBegin(), PetscSFScatterBegin() 23695fce210SBarry Smith @*/ 23795fce210SBarry Smith PetscErrorCode PetscSFSetRankOrder(PetscSF sf,PetscBool flg) 23895fce210SBarry Smith { 23995fce210SBarry Smith 24095fce210SBarry Smith PetscFunctionBegin; 24195fce210SBarry Smith PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 24295fce210SBarry Smith PetscValidLogicalCollectiveBool(sf,flg,2); 24395fce210SBarry Smith if (sf->multi) SETERRQ(PetscObjectComm((PetscObject)sf),PETSC_ERR_ARG_WRONGSTATE,"Rank ordering must be set before first call to PetscSFGatherBegin() or PetscSFScatterBegin()"); 24495fce210SBarry Smith sf->rankorder = flg; 24595fce210SBarry Smith PetscFunctionReturn(0); 24695fce210SBarry Smith } 24795fce210SBarry Smith 24895fce210SBarry Smith /*@C 24995fce210SBarry Smith PetscSFSetGraph - Set a parallel star forest 25095fce210SBarry Smith 25195fce210SBarry Smith Collective 25295fce210SBarry Smith 25395fce210SBarry Smith Input Arguments: 25495fce210SBarry Smith + sf - star forest 25595fce210SBarry Smith . nroots - number of root vertices on the current process (these are possible targets for other process to attach leaves) 25695fce210SBarry Smith . nleaves - number of leaf vertices on the current process, each of these references a root on any process 25795fce210SBarry Smith . ilocal - locations of leaves in leafdata buffers, pass NULL for contiguous storage 25895fce210SBarry Smith . localmode - copy mode for ilocal 25995fce210SBarry Smith . iremote - remote locations of root vertices for each leaf on the current process 26095fce210SBarry Smith - remotemode - copy mode for iremote 26195fce210SBarry Smith 26295fce210SBarry Smith Level: intermediate 26395fce210SBarry Smith 26495fce210SBarry Smith .seealso: PetscSFCreate(), PetscSFView(), PetscSFGetGraph() 26595fce210SBarry Smith @*/ 26695fce210SBarry Smith PetscErrorCode PetscSFSetGraph(PetscSF sf,PetscInt nroots,PetscInt nleaves,const PetscInt *ilocal,PetscCopyMode localmode,const PetscSFNode *iremote,PetscCopyMode remotemode) 26795fce210SBarry Smith { 26895fce210SBarry Smith PetscErrorCode ierr; 26995fce210SBarry Smith PetscTable table; 27095fce210SBarry Smith PetscTablePosition pos; 27195fce210SBarry Smith PetscMPIInt size; 27295fce210SBarry Smith PetscInt i,*rcount,*ranks; 27395fce210SBarry Smith 27495fce210SBarry Smith PetscFunctionBegin; 27595fce210SBarry Smith PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 276563ffbabSMatthew G. Knepley ierr = PetscLogEventBegin(PETSCSF_SetGraph,sf,0,0,0);CHKERRQ(ierr); 27795fce210SBarry Smith if (nleaves && ilocal) PetscValidIntPointer(ilocal,4); 27895fce210SBarry Smith if (nleaves) PetscValidPointer(iremote,6); 27995fce210SBarry Smith if (nroots < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"roots %D, cannot be negative",nroots); 28095fce210SBarry Smith if (nleaves < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"nleaves %D, cannot be negative",nleaves); 28195fce210SBarry Smith ierr = PetscSFReset(sf);CHKERRQ(ierr); 28295fce210SBarry Smith sf->nroots = nroots; 28395fce210SBarry Smith sf->nleaves = nleaves; 28495fce210SBarry Smith if (ilocal) { 28595fce210SBarry Smith switch (localmode) { 28695fce210SBarry Smith case PETSC_COPY_VALUES: 287785e854fSJed Brown ierr = PetscMalloc1(nleaves,&sf->mine_alloc);CHKERRQ(ierr); 28895fce210SBarry Smith sf->mine = sf->mine_alloc; 28995fce210SBarry Smith ierr = PetscMemcpy(sf->mine,ilocal,nleaves*sizeof(*sf->mine));CHKERRQ(ierr); 29095fce210SBarry Smith sf->minleaf = PETSC_MAX_INT; 29195fce210SBarry Smith sf->maxleaf = PETSC_MIN_INT; 29295fce210SBarry Smith for (i=0; i<nleaves; i++) { 29395fce210SBarry Smith sf->minleaf = PetscMin(sf->minleaf,ilocal[i]); 29495fce210SBarry Smith sf->maxleaf = PetscMax(sf->maxleaf,ilocal[i]); 29595fce210SBarry Smith } 29695fce210SBarry Smith break; 29795fce210SBarry Smith case PETSC_OWN_POINTER: 29895fce210SBarry Smith sf->mine_alloc = (PetscInt*)ilocal; 29995fce210SBarry Smith sf->mine = sf->mine_alloc; 30095fce210SBarry Smith break; 30195fce210SBarry Smith case PETSC_USE_POINTER: 30295fce210SBarry Smith sf->mine = (PetscInt*)ilocal; 30395fce210SBarry Smith break; 30495fce210SBarry Smith default: SETERRQ(PetscObjectComm((PetscObject)sf),PETSC_ERR_ARG_OUTOFRANGE,"Unknown localmode"); 30595fce210SBarry Smith } 30695fce210SBarry Smith } 30795fce210SBarry Smith if (!ilocal || nleaves > 0) { 30895fce210SBarry Smith sf->minleaf = 0; 30995fce210SBarry Smith sf->maxleaf = nleaves - 1; 31095fce210SBarry Smith } 31195fce210SBarry Smith switch (remotemode) { 31295fce210SBarry Smith case PETSC_COPY_VALUES: 313785e854fSJed Brown ierr = PetscMalloc1(nleaves,&sf->remote_alloc);CHKERRQ(ierr); 31495fce210SBarry Smith sf->remote = sf->remote_alloc; 31595fce210SBarry Smith ierr = PetscMemcpy(sf->remote,iremote,nleaves*sizeof(*sf->remote));CHKERRQ(ierr); 31695fce210SBarry Smith break; 31795fce210SBarry Smith case PETSC_OWN_POINTER: 31895fce210SBarry Smith sf->remote_alloc = (PetscSFNode*)iremote; 31995fce210SBarry Smith sf->remote = sf->remote_alloc; 32095fce210SBarry Smith break; 32195fce210SBarry Smith case PETSC_USE_POINTER: 32295fce210SBarry Smith sf->remote = (PetscSFNode*)iremote; 32395fce210SBarry Smith break; 32495fce210SBarry Smith default: SETERRQ(PetscObjectComm((PetscObject)sf),PETSC_ERR_ARG_OUTOFRANGE,"Unknown remotemode"); 32595fce210SBarry Smith } 32695fce210SBarry Smith 32795fce210SBarry Smith ierr = MPI_Comm_size(PetscObjectComm((PetscObject)sf),&size);CHKERRQ(ierr); 32895fce210SBarry Smith ierr = PetscTableCreate(10,size,&table);CHKERRQ(ierr); 32995fce210SBarry Smith for (i=0; i<nleaves; i++) { 33095fce210SBarry Smith /* Log 1-based rank */ 33195fce210SBarry Smith ierr = PetscTableAdd(table,iremote[i].rank+1,1,ADD_VALUES);CHKERRQ(ierr); 33295fce210SBarry Smith } 33395fce210SBarry Smith ierr = PetscTableGetCount(table,&sf->nranks);CHKERRQ(ierr); 334dcca6d9dSJed Brown ierr = PetscMalloc4(sf->nranks,&sf->ranks,sf->nranks+1,&sf->roffset,nleaves,&sf->rmine,nleaves,&sf->rremote);CHKERRQ(ierr); 335dcca6d9dSJed Brown ierr = PetscMalloc2(sf->nranks,&rcount,sf->nranks,&ranks);CHKERRQ(ierr); 33695fce210SBarry Smith ierr = PetscTableGetHeadPosition(table,&pos);CHKERRQ(ierr); 33795fce210SBarry Smith for (i=0; i<sf->nranks; i++) { 33895fce210SBarry Smith ierr = PetscTableGetNext(table,&pos,&ranks[i],&rcount[i]);CHKERRQ(ierr); 33995fce210SBarry Smith ranks[i]--; /* Convert back to 0-based */ 34095fce210SBarry Smith } 34195fce210SBarry Smith ierr = PetscTableDestroy(&table);CHKERRQ(ierr); 34295fce210SBarry Smith ierr = PetscSortIntWithArray(sf->nranks,ranks,rcount);CHKERRQ(ierr); 34395fce210SBarry Smith sf->roffset[0] = 0; 34495fce210SBarry Smith for (i=0; i<sf->nranks; i++) { 34595fce210SBarry Smith ierr = PetscMPIIntCast(ranks[i],sf->ranks+i);CHKERRQ(ierr); 34695fce210SBarry Smith sf->roffset[i+1] = sf->roffset[i] + rcount[i]; 34795fce210SBarry Smith rcount[i] = 0; 34895fce210SBarry Smith } 34995fce210SBarry Smith for (i=0; i<nleaves; i++) { 35095fce210SBarry Smith PetscInt lo,hi,irank; 35195fce210SBarry Smith /* Search for index of iremote[i].rank in sf->ranks */ 35295fce210SBarry Smith lo = 0; hi = sf->nranks; 35395fce210SBarry Smith while (hi - lo > 1) { 35495fce210SBarry Smith PetscInt mid = lo + (hi - lo)/2; 35595fce210SBarry Smith if (iremote[i].rank < sf->ranks[mid]) hi = mid; 35695fce210SBarry Smith else lo = mid; 35795fce210SBarry Smith } 35895fce210SBarry Smith if (hi - lo == 1 && iremote[i].rank == sf->ranks[lo]) irank = lo; 35995fce210SBarry Smith else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Could not find rank %D in array",iremote[i].rank); 36095fce210SBarry Smith sf->rmine[sf->roffset[irank] + rcount[irank]] = ilocal ? ilocal[i] : i; 36195fce210SBarry Smith sf->rremote[sf->roffset[irank] + rcount[irank]] = iremote[i].index; 36295fce210SBarry Smith rcount[irank]++; 36395fce210SBarry Smith } 36495fce210SBarry Smith ierr = PetscFree2(rcount,ranks);CHKERRQ(ierr); 36595fce210SBarry Smith 36695fce210SBarry Smith sf->graphset = PETSC_TRUE; 367563ffbabSMatthew G. Knepley ierr = PetscLogEventEnd(PETSCSF_SetGraph,sf,0,0,0);CHKERRQ(ierr); 36895fce210SBarry Smith PetscFunctionReturn(0); 36995fce210SBarry Smith } 37095fce210SBarry Smith 37195fce210SBarry Smith /*@C 37295fce210SBarry Smith PetscSFCreateInverseSF - given a PetscSF in which all vertices have degree 1, creates the inverse map 37395fce210SBarry Smith 37495fce210SBarry Smith Collective 37595fce210SBarry Smith 37695fce210SBarry Smith Input Arguments: 37795fce210SBarry Smith . sf - star forest to invert 37895fce210SBarry Smith 37995fce210SBarry Smith Output Arguments: 38095fce210SBarry Smith . isf - inverse of sf 38195fce210SBarry Smith 38295fce210SBarry Smith Level: advanced 38395fce210SBarry Smith 38495fce210SBarry Smith Notes: 38595fce210SBarry Smith All roots must have degree 1. 38695fce210SBarry Smith 38795fce210SBarry Smith The local space may be a permutation, but cannot be sparse. 38895fce210SBarry Smith 38995fce210SBarry Smith .seealso: PetscSFSetGraph() 39095fce210SBarry Smith @*/ 39195fce210SBarry Smith PetscErrorCode PetscSFCreateInverseSF(PetscSF sf,PetscSF *isf) 39295fce210SBarry Smith { 39395fce210SBarry Smith PetscErrorCode ierr; 39495fce210SBarry Smith PetscMPIInt rank; 39595fce210SBarry Smith PetscInt i,nroots,nleaves,maxlocal,count,*newilocal; 39695fce210SBarry Smith const PetscInt *ilocal; 39795fce210SBarry Smith PetscSFNode *roots,*leaves; 39895fce210SBarry Smith 39995fce210SBarry Smith PetscFunctionBegin; 40095fce210SBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)sf),&rank);CHKERRQ(ierr); 40195fce210SBarry Smith ierr = PetscSFGetGraph(sf,&nroots,&nleaves,&ilocal,NULL);CHKERRQ(ierr); 40295fce210SBarry Smith for (i=0,maxlocal=0; i<nleaves; i++) maxlocal = PetscMax(maxlocal,(ilocal ? ilocal[i] : i)+1); 403ae9aee6dSMatthew G. Knepley ierr = PetscMalloc2(nroots,&roots,maxlocal,&leaves);CHKERRQ(ierr); 404ae9aee6dSMatthew G. Knepley for (i=0; i<maxlocal; i++) { 40595fce210SBarry Smith leaves[i].rank = rank; 40695fce210SBarry Smith leaves[i].index = i; 40795fce210SBarry Smith } 40895fce210SBarry Smith for (i=0; i <nroots; i++) { 40995fce210SBarry Smith roots[i].rank = -1; 41095fce210SBarry Smith roots[i].index = -1; 41195fce210SBarry Smith } 4128bfbc91cSJed Brown ierr = PetscSFReduceBegin(sf,MPIU_2INT,leaves,roots,MPIU_REPLACE);CHKERRQ(ierr); 4138bfbc91cSJed Brown ierr = PetscSFReduceEnd(sf,MPIU_2INT,leaves,roots,MPIU_REPLACE);CHKERRQ(ierr); 41495fce210SBarry Smith 41595fce210SBarry Smith /* Check whether our leaves are sparse */ 41695fce210SBarry Smith for (i=0,count=0; i<nroots; i++) if (roots[i].rank >= 0) count++; 41795fce210SBarry Smith if (count == nroots) newilocal = NULL; 41895fce210SBarry Smith else { /* Index for sparse leaves and compact "roots" array (which is to become our leaves). */ 419785e854fSJed Brown ierr = PetscMalloc1(count,&newilocal);CHKERRQ(ierr); 42095fce210SBarry Smith for (i=0,count=0; i<nroots; i++) { 42195fce210SBarry Smith if (roots[i].rank >= 0) { 42295fce210SBarry Smith newilocal[count] = i; 42395fce210SBarry Smith roots[count].rank = roots[i].rank; 42495fce210SBarry Smith roots[count].index = roots[i].index; 42595fce210SBarry Smith count++; 42695fce210SBarry Smith } 42795fce210SBarry Smith } 42895fce210SBarry Smith } 42995fce210SBarry Smith 43095fce210SBarry Smith ierr = PetscSFDuplicate(sf,PETSCSF_DUPLICATE_CONFONLY,isf);CHKERRQ(ierr); 43195fce210SBarry Smith ierr = PetscSFSetGraph(*isf,maxlocal,count,newilocal,PETSC_OWN_POINTER,roots,PETSC_COPY_VALUES);CHKERRQ(ierr); 43295fce210SBarry Smith ierr = PetscFree2(roots,leaves);CHKERRQ(ierr); 43395fce210SBarry Smith PetscFunctionReturn(0); 43495fce210SBarry Smith } 43595fce210SBarry Smith 43695fce210SBarry Smith /*@ 43795fce210SBarry Smith PetscSFDuplicate - duplicate a PetscSF, optionally preserving rank connectivity and graph 43895fce210SBarry Smith 43995fce210SBarry Smith Collective 44095fce210SBarry Smith 44195fce210SBarry Smith Input Arguments: 44295fce210SBarry Smith + sf - communication object to duplicate 44395fce210SBarry Smith - opt - PETSCSF_DUPLICATE_CONFONLY, PETSCSF_DUPLICATE_RANKS, or PETSCSF_DUPLICATE_GRAPH (see PetscSFDuplicateOption) 44495fce210SBarry Smith 44595fce210SBarry Smith Output Arguments: 44695fce210SBarry Smith . newsf - new communication object 44795fce210SBarry Smith 44895fce210SBarry Smith Level: beginner 44995fce210SBarry Smith 45095fce210SBarry Smith .seealso: PetscSFCreate(), PetscSFSetType(), PetscSFSetGraph() 45195fce210SBarry Smith @*/ 45295fce210SBarry Smith PetscErrorCode PetscSFDuplicate(PetscSF sf,PetscSFDuplicateOption opt,PetscSF *newsf) 45395fce210SBarry Smith { 45495fce210SBarry Smith PetscErrorCode ierr; 45595fce210SBarry Smith 45695fce210SBarry Smith PetscFunctionBegin; 45795fce210SBarry Smith ierr = PetscSFCreate(PetscObjectComm((PetscObject)sf),newsf);CHKERRQ(ierr); 45895fce210SBarry Smith ierr = PetscSFSetType(*newsf,((PetscObject)sf)->type_name);CHKERRQ(ierr); 45995fce210SBarry Smith if (sf->ops->Duplicate) {ierr = (*sf->ops->Duplicate)(sf,opt,*newsf);CHKERRQ(ierr);} 46095fce210SBarry Smith if (opt == PETSCSF_DUPLICATE_GRAPH) { 46195fce210SBarry Smith PetscInt nroots,nleaves; 46295fce210SBarry Smith const PetscInt *ilocal; 46395fce210SBarry Smith const PetscSFNode *iremote; 46495fce210SBarry Smith ierr = PetscSFGetGraph(sf,&nroots,&nleaves,&ilocal,&iremote);CHKERRQ(ierr); 46595fce210SBarry Smith ierr = PetscSFSetGraph(*newsf,nroots,nleaves,ilocal,PETSC_COPY_VALUES,iremote,PETSC_COPY_VALUES);CHKERRQ(ierr); 46695fce210SBarry Smith } 46795fce210SBarry Smith PetscFunctionReturn(0); 46895fce210SBarry Smith } 46995fce210SBarry Smith 47095fce210SBarry Smith /*@C 47195fce210SBarry Smith PetscSFGetGraph - Get the graph specifying a parallel star forest 47295fce210SBarry Smith 47395fce210SBarry Smith Not Collective 47495fce210SBarry Smith 47595fce210SBarry Smith Input Arguments: 47695fce210SBarry Smith . sf - star forest 47795fce210SBarry Smith 47895fce210SBarry Smith Output Arguments: 47995fce210SBarry Smith + nroots - number of root vertices on the current process (these are possible targets for other process to attach leaves) 48095fce210SBarry Smith . nleaves - number of leaf vertices on the current process, each of these references a root on any process 48195fce210SBarry Smith . ilocal - locations of leaves in leafdata buffers 48295fce210SBarry Smith - iremote - remote locations of root vertices for each leaf on the current process 48395fce210SBarry Smith 48495fce210SBarry Smith Level: intermediate 48595fce210SBarry Smith 48695fce210SBarry Smith .seealso: PetscSFCreate(), PetscSFView(), PetscSFSetGraph() 48795fce210SBarry Smith @*/ 48895fce210SBarry Smith PetscErrorCode PetscSFGetGraph(PetscSF sf,PetscInt *nroots,PetscInt *nleaves,const PetscInt **ilocal,const PetscSFNode **iremote) 48995fce210SBarry Smith { 49095fce210SBarry Smith 49195fce210SBarry Smith PetscFunctionBegin; 49295fce210SBarry Smith PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 49395fce210SBarry Smith /* We are not currently requiring that the graph is set, thus returning nroots=-1 if it has not been set */ 49495fce210SBarry Smith /* if (!sf->graphset) SETERRQ(PetscObjectComm((PetscObject)sf),PETSC_ERR_ARG_WRONGSTATE,"Graph has not been set, must call PetscSFSetGraph()"); */ 49595fce210SBarry Smith if (nroots) *nroots = sf->nroots; 49695fce210SBarry Smith if (nleaves) *nleaves = sf->nleaves; 49795fce210SBarry Smith if (ilocal) *ilocal = sf->mine; 49895fce210SBarry Smith if (iremote) *iremote = sf->remote; 49995fce210SBarry Smith PetscFunctionReturn(0); 50095fce210SBarry Smith } 50195fce210SBarry Smith 50295fce210SBarry Smith /*@C 50395fce210SBarry Smith PetscSFGetLeafRange - Get the active leaf ranges 50495fce210SBarry Smith 50595fce210SBarry Smith Not Collective 50695fce210SBarry Smith 50795fce210SBarry Smith Input Arguments: 50895fce210SBarry Smith . sf - star forest 50995fce210SBarry Smith 51095fce210SBarry Smith Output Arguments: 51195fce210SBarry Smith + minleaf - minimum active leaf on this process 51295fce210SBarry Smith - maxleaf - maximum active leaf on this process 51395fce210SBarry Smith 51495fce210SBarry Smith Level: developer 51595fce210SBarry Smith 51695fce210SBarry Smith .seealso: PetscSFCreate(), PetscSFView(), PetscSFSetGraph(), PetscSFGetGraph() 51795fce210SBarry Smith @*/ 51895fce210SBarry Smith PetscErrorCode PetscSFGetLeafRange(PetscSF sf,PetscInt *minleaf,PetscInt *maxleaf) 51995fce210SBarry Smith { 52095fce210SBarry Smith 52195fce210SBarry Smith PetscFunctionBegin; 52295fce210SBarry Smith PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 52395fce210SBarry Smith if (minleaf) *minleaf = sf->minleaf; 52495fce210SBarry Smith if (maxleaf) *maxleaf = sf->maxleaf; 52595fce210SBarry Smith PetscFunctionReturn(0); 52695fce210SBarry Smith } 52795fce210SBarry Smith 52895fce210SBarry Smith /*@C 52995fce210SBarry Smith PetscSFView - view a star forest 53095fce210SBarry Smith 53195fce210SBarry Smith Collective 53295fce210SBarry Smith 53395fce210SBarry Smith Input Arguments: 53495fce210SBarry Smith + sf - star forest 53595fce210SBarry Smith - viewer - viewer to display graph, for example PETSC_VIEWER_STDOUT_WORLD 53695fce210SBarry Smith 53795fce210SBarry Smith Level: beginner 53895fce210SBarry Smith 53995fce210SBarry Smith .seealso: PetscSFCreate(), PetscSFSetGraph() 54095fce210SBarry Smith @*/ 54195fce210SBarry Smith PetscErrorCode PetscSFView(PetscSF sf,PetscViewer viewer) 54295fce210SBarry Smith { 54395fce210SBarry Smith PetscErrorCode ierr; 54495fce210SBarry Smith PetscBool iascii; 54595fce210SBarry Smith PetscViewerFormat format; 54695fce210SBarry Smith 54795fce210SBarry Smith PetscFunctionBegin; 54895fce210SBarry Smith PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 54995fce210SBarry Smith if (!viewer) {ierr = PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject)sf),&viewer);CHKERRQ(ierr);} 55095fce210SBarry Smith PetscValidHeaderSpecific(viewer,PETSC_VIEWER_CLASSID,2); 55195fce210SBarry Smith PetscCheckSameComm(sf,1,viewer,2); 55295fce210SBarry Smith ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 55395fce210SBarry Smith if (iascii) { 55495fce210SBarry Smith PetscMPIInt rank; 55595fce210SBarry Smith PetscInt i,j; 55695fce210SBarry Smith 557dae58748SBarry Smith ierr = PetscObjectPrintClassNamePrefixType((PetscObject)sf,viewer);CHKERRQ(ierr); 55895fce210SBarry Smith ierr = PetscViewerASCIIPushTab(viewer);CHKERRQ(ierr); 55995fce210SBarry Smith if (sf->ops->View) {ierr = (*sf->ops->View)(sf,viewer);CHKERRQ(ierr);} 56095fce210SBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)sf),&rank);CHKERRQ(ierr); 5611575c14dSBarry Smith ierr = PetscViewerASCIIPushSynchronized(viewer);CHKERRQ(ierr); 56295fce210SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Number of roots=%D, leaves=%D, remote ranks=%D\n",rank,sf->nroots,sf->nleaves,sf->nranks);CHKERRQ(ierr); 56395fce210SBarry Smith for (i=0; i<sf->nleaves; i++) { 56495fce210SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] %D <- (%D,%D)\n",rank,sf->mine ? sf->mine[i] : i,sf->remote[i].rank,sf->remote[i].index);CHKERRQ(ierr); 56595fce210SBarry Smith } 56695fce210SBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 56795fce210SBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 56895fce210SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 56995fce210SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Roots referenced by my leaves, by rank\n",rank);CHKERRQ(ierr); 57095fce210SBarry Smith for (i=0; i<sf->nranks; i++) { 5717904a332SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] %d: %D edges\n",rank,sf->ranks[i],sf->roffset[i+1]-sf->roffset[i]);CHKERRQ(ierr); 57295fce210SBarry Smith for (j=sf->roffset[i]; j<sf->roffset[i+1]; j++) { 57395fce210SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] %D <- %D\n",rank,sf->rmine[j],sf->rremote[j]);CHKERRQ(ierr); 57495fce210SBarry Smith } 57595fce210SBarry Smith } 57695fce210SBarry Smith } 57795fce210SBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 5781575c14dSBarry Smith ierr = PetscViewerASCIIPopSynchronized(viewer);CHKERRQ(ierr); 57995fce210SBarry Smith ierr = PetscViewerASCIIPopTab(viewer);CHKERRQ(ierr); 58095fce210SBarry Smith } 58195fce210SBarry Smith PetscFunctionReturn(0); 58295fce210SBarry Smith } 58395fce210SBarry Smith 58495fce210SBarry Smith /*@C 58595fce210SBarry Smith PetscSFGetRanks - Get ranks and number of vertices referenced by leaves on this process 58695fce210SBarry Smith 58795fce210SBarry Smith Not Collective 58895fce210SBarry Smith 58995fce210SBarry Smith Input Arguments: 59095fce210SBarry Smith . sf - star forest 59195fce210SBarry Smith 59295fce210SBarry Smith Output Arguments: 59395fce210SBarry Smith + nranks - number of ranks referenced by local part 59495fce210SBarry Smith . ranks - array of ranks 59595fce210SBarry Smith . roffset - offset in rmine/rremote for each rank (length nranks+1) 59695fce210SBarry Smith . rmine - concatenated array holding local indices referencing each remote rank 59795fce210SBarry Smith - rremote - concatenated array holding remote indices referenced for each remote rank 59895fce210SBarry Smith 59995fce210SBarry Smith Level: developer 60095fce210SBarry Smith 60195fce210SBarry Smith .seealso: PetscSFSetGraph() 60295fce210SBarry Smith @*/ 60395fce210SBarry Smith PetscErrorCode PetscSFGetRanks(PetscSF sf,PetscInt *nranks,const PetscMPIInt **ranks,const PetscInt **roffset,const PetscInt **rmine,const PetscInt **rremote) 60495fce210SBarry Smith { 60595fce210SBarry Smith 60695fce210SBarry Smith PetscFunctionBegin; 60795fce210SBarry Smith PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 60895fce210SBarry Smith if (nranks) *nranks = sf->nranks; 60995fce210SBarry Smith if (ranks) *ranks = sf->ranks; 61095fce210SBarry Smith if (roffset) *roffset = sf->roffset; 61195fce210SBarry Smith if (rmine) *rmine = sf->rmine; 61295fce210SBarry Smith if (rremote) *rremote = sf->rremote; 61395fce210SBarry Smith PetscFunctionReturn(0); 61495fce210SBarry Smith } 61595fce210SBarry Smith 61695fce210SBarry Smith /*@C 61795fce210SBarry Smith PetscSFGetGroups - gets incoming and outgoing process groups 61895fce210SBarry Smith 61995fce210SBarry Smith Collective 62095fce210SBarry Smith 62195fce210SBarry Smith Input Argument: 62295fce210SBarry Smith . sf - star forest 62395fce210SBarry Smith 62495fce210SBarry Smith Output Arguments: 62595fce210SBarry Smith + incoming - group of origin processes for incoming edges (leaves that reference my roots) 62695fce210SBarry Smith - outgoing - group of destination processes for outgoing edges (roots that I reference) 62795fce210SBarry Smith 62895fce210SBarry Smith Level: developer 62995fce210SBarry Smith 63095fce210SBarry Smith .seealso: PetscSFGetWindow(), PetscSFRestoreWindow() 63195fce210SBarry Smith @*/ 63295fce210SBarry Smith PetscErrorCode PetscSFGetGroups(PetscSF sf,MPI_Group *incoming,MPI_Group *outgoing) 63395fce210SBarry Smith { 63495fce210SBarry Smith PetscErrorCode ierr; 63595fce210SBarry Smith MPI_Group group; 63695fce210SBarry Smith 63795fce210SBarry Smith PetscFunctionBegin; 63895fce210SBarry Smith if (sf->ingroup == MPI_GROUP_NULL) { 63995fce210SBarry Smith PetscInt i; 64095fce210SBarry Smith const PetscInt *indegree; 64195fce210SBarry Smith PetscMPIInt rank,*outranks,*inranks; 64295fce210SBarry Smith PetscSFNode *remote; 64395fce210SBarry Smith PetscSF bgcount; 64495fce210SBarry Smith 64595fce210SBarry Smith /* Compute the number of incoming ranks */ 646785e854fSJed Brown ierr = PetscMalloc1(sf->nranks,&remote);CHKERRQ(ierr); 64795fce210SBarry Smith for (i=0; i<sf->nranks; i++) { 64895fce210SBarry Smith remote[i].rank = sf->ranks[i]; 64995fce210SBarry Smith remote[i].index = 0; 65095fce210SBarry Smith } 65195fce210SBarry Smith ierr = PetscSFDuplicate(sf,PETSCSF_DUPLICATE_CONFONLY,&bgcount);CHKERRQ(ierr); 65295fce210SBarry Smith ierr = PetscSFSetGraph(bgcount,1,sf->nranks,NULL,PETSC_COPY_VALUES,remote,PETSC_OWN_POINTER);CHKERRQ(ierr); 65395fce210SBarry Smith ierr = PetscSFComputeDegreeBegin(bgcount,&indegree);CHKERRQ(ierr); 65495fce210SBarry Smith ierr = PetscSFComputeDegreeEnd(bgcount,&indegree);CHKERRQ(ierr); 65595fce210SBarry Smith 65695fce210SBarry Smith /* Enumerate the incoming ranks */ 657dcca6d9dSJed Brown ierr = PetscMalloc2(indegree[0],&inranks,sf->nranks,&outranks);CHKERRQ(ierr); 65895fce210SBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)sf),&rank);CHKERRQ(ierr); 65995fce210SBarry Smith for (i=0; i<sf->nranks; i++) outranks[i] = rank; 66095fce210SBarry Smith ierr = PetscSFGatherBegin(bgcount,MPI_INT,outranks,inranks);CHKERRQ(ierr); 66195fce210SBarry Smith ierr = PetscSFGatherEnd(bgcount,MPI_INT,outranks,inranks);CHKERRQ(ierr); 66295fce210SBarry Smith ierr = MPI_Comm_group(PetscObjectComm((PetscObject)sf),&group);CHKERRQ(ierr); 66395fce210SBarry Smith ierr = MPI_Group_incl(group,indegree[0],inranks,&sf->ingroup);CHKERRQ(ierr); 66495fce210SBarry Smith ierr = MPI_Group_free(&group);CHKERRQ(ierr); 66595fce210SBarry Smith ierr = PetscFree2(inranks,outranks);CHKERRQ(ierr); 66695fce210SBarry Smith ierr = PetscSFDestroy(&bgcount);CHKERRQ(ierr); 66795fce210SBarry Smith } 66895fce210SBarry Smith *incoming = sf->ingroup; 66995fce210SBarry Smith 67095fce210SBarry Smith if (sf->outgroup == MPI_GROUP_NULL) { 67195fce210SBarry Smith ierr = MPI_Comm_group(PetscObjectComm((PetscObject)sf),&group);CHKERRQ(ierr); 67295fce210SBarry Smith ierr = MPI_Group_incl(group,sf->nranks,sf->ranks,&sf->outgroup);CHKERRQ(ierr); 67395fce210SBarry Smith ierr = MPI_Group_free(&group);CHKERRQ(ierr); 67495fce210SBarry Smith } 67595fce210SBarry Smith *outgoing = sf->outgroup; 67695fce210SBarry Smith PetscFunctionReturn(0); 67795fce210SBarry Smith } 67895fce210SBarry Smith 67995fce210SBarry Smith /*@C 68095fce210SBarry Smith PetscSFGetMultiSF - gets the inner SF implemeting gathers and scatters 68195fce210SBarry Smith 68295fce210SBarry Smith Collective 68395fce210SBarry Smith 68495fce210SBarry Smith Input Argument: 68595fce210SBarry Smith . sf - star forest that may contain roots with 0 or with more than 1 vertex 68695fce210SBarry Smith 68795fce210SBarry Smith Output Arguments: 68895fce210SBarry Smith . multi - star forest with split roots, such that each root has degree exactly 1 68995fce210SBarry Smith 69095fce210SBarry Smith Level: developer 69195fce210SBarry Smith 69295fce210SBarry Smith Notes: 69395fce210SBarry Smith 69495fce210SBarry Smith In most cases, users should use PetscSFGatherBegin() and PetscSFScatterBegin() instead of manipulating multi 69595fce210SBarry Smith directly. Since multi satisfies the stronger condition that each entry in the global space has exactly one incoming 69695fce210SBarry Smith edge, it is a candidate for future optimization that might involve its removal. 69795fce210SBarry Smith 69895fce210SBarry Smith .seealso: PetscSFSetGraph(), PetscSFGatherBegin(), PetscSFScatterBegin() 69995fce210SBarry Smith @*/ 70095fce210SBarry Smith PetscErrorCode PetscSFGetMultiSF(PetscSF sf,PetscSF *multi) 70195fce210SBarry Smith { 70295fce210SBarry Smith PetscErrorCode ierr; 70395fce210SBarry Smith 70495fce210SBarry Smith PetscFunctionBegin; 70595fce210SBarry Smith PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 70695fce210SBarry Smith PetscValidPointer(multi,2); 70795fce210SBarry Smith if (sf->nroots < 0) { /* Graph has not been set yet; why do we need this? */ 70895fce210SBarry Smith ierr = PetscSFDuplicate(sf,PETSCSF_DUPLICATE_RANKS,&sf->multi);CHKERRQ(ierr); 70995fce210SBarry Smith *multi = sf->multi; 71095fce210SBarry Smith PetscFunctionReturn(0); 71195fce210SBarry Smith } 71295fce210SBarry Smith if (!sf->multi) { 71395fce210SBarry Smith const PetscInt *indegree; 7149837ea96SMatthew G. Knepley PetscInt i,*inoffset,*outones,*outoffset,maxlocal; 71595fce210SBarry Smith PetscSFNode *remote; 71695fce210SBarry Smith ierr = PetscSFComputeDegreeBegin(sf,&indegree);CHKERRQ(ierr); 71795fce210SBarry Smith ierr = PetscSFComputeDegreeEnd(sf,&indegree);CHKERRQ(ierr); 7189837ea96SMatthew G. Knepley for (i=0,maxlocal=0; i<sf->nleaves; i++) maxlocal = PetscMax(maxlocal,(sf->mine ? sf->mine[i] : i)+1); 7199837ea96SMatthew G. Knepley ierr = PetscMalloc3(sf->nroots+1,&inoffset,maxlocal,&outones,maxlocal,&outoffset);CHKERRQ(ierr); 72095fce210SBarry Smith inoffset[0] = 0; 72195fce210SBarry Smith for (i=0; i<sf->nroots; i++) inoffset[i+1] = inoffset[i] + indegree[i]; 7229837ea96SMatthew G. Knepley for (i=0; i<maxlocal; i++) outones[i] = 1; 723dbd2ff41SBarry Smith ierr = PetscSFFetchAndOpBegin(sf,MPIU_INT,inoffset,outones,outoffset,MPI_SUM);CHKERRQ(ierr); 724dbd2ff41SBarry Smith ierr = PetscSFFetchAndOpEnd(sf,MPIU_INT,inoffset,outones,outoffset,MPI_SUM);CHKERRQ(ierr); 72595fce210SBarry Smith for (i=0; i<sf->nroots; i++) inoffset[i] -= indegree[i]; /* Undo the increment */ 72695fce210SBarry Smith #if 0 72795fce210SBarry Smith #if defined(PETSC_USE_DEBUG) /* Check that the expected number of increments occurred */ 72895fce210SBarry Smith for (i=0; i<sf->nroots; i++) { 72995fce210SBarry Smith if (inoffset[i] + indegree[i] != inoffset[i+1]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect result after PetscSFFetchAndOp"); 73095fce210SBarry Smith } 73195fce210SBarry Smith #endif 73295fce210SBarry Smith #endif 733785e854fSJed Brown ierr = PetscMalloc1(sf->nleaves,&remote);CHKERRQ(ierr); 73495fce210SBarry Smith for (i=0; i<sf->nleaves; i++) { 73595fce210SBarry Smith remote[i].rank = sf->remote[i].rank; 73638e7336fSToby Isaac remote[i].index = outoffset[sf->mine ? sf->mine[i] : i]; 73795fce210SBarry Smith } 73895fce210SBarry Smith ierr = PetscSFDuplicate(sf,PETSCSF_DUPLICATE_RANKS,&sf->multi);CHKERRQ(ierr); 73901365b40SToby Isaac ierr = PetscSFSetGraph(sf->multi,inoffset[sf->nroots],sf->nleaves,sf->mine,PETSC_COPY_VALUES,remote,PETSC_OWN_POINTER);CHKERRQ(ierr); 74095fce210SBarry Smith if (sf->rankorder) { /* Sort the ranks */ 74195fce210SBarry Smith PetscMPIInt rank; 74295fce210SBarry Smith PetscInt *inranks,*newoffset,*outranks,*newoutoffset,*tmpoffset,maxdegree; 74395fce210SBarry Smith PetscSFNode *newremote; 74495fce210SBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)sf),&rank);CHKERRQ(ierr); 74595fce210SBarry Smith for (i=0,maxdegree=0; i<sf->nroots; i++) maxdegree = PetscMax(maxdegree,indegree[i]); 7469837ea96SMatthew G. Knepley ierr = PetscMalloc5(sf->multi->nroots,&inranks,sf->multi->nroots,&newoffset,maxlocal,&outranks,maxlocal,&newoutoffset,maxdegree,&tmpoffset);CHKERRQ(ierr); 7479837ea96SMatthew G. Knepley for (i=0; i<maxlocal; i++) outranks[i] = rank; 7488bfbc91cSJed Brown ierr = PetscSFReduceBegin(sf->multi,MPIU_INT,outranks,inranks,MPIU_REPLACE);CHKERRQ(ierr); 7498bfbc91cSJed Brown ierr = PetscSFReduceEnd(sf->multi,MPIU_INT,outranks,inranks,MPIU_REPLACE);CHKERRQ(ierr); 75095fce210SBarry Smith /* Sort the incoming ranks at each vertex, build the inverse map */ 75195fce210SBarry Smith for (i=0; i<sf->nroots; i++) { 75295fce210SBarry Smith PetscInt j; 75395fce210SBarry Smith for (j=0; j<indegree[i]; j++) tmpoffset[j] = j; 75495fce210SBarry Smith ierr = PetscSortIntWithArray(indegree[i],inranks+inoffset[i],tmpoffset);CHKERRQ(ierr); 75595fce210SBarry Smith for (j=0; j<indegree[i]; j++) newoffset[inoffset[i] + tmpoffset[j]] = inoffset[i] + j; 75695fce210SBarry Smith } 75795fce210SBarry Smith ierr = PetscSFBcastBegin(sf->multi,MPIU_INT,newoffset,newoutoffset);CHKERRQ(ierr); 75895fce210SBarry Smith ierr = PetscSFBcastEnd(sf->multi,MPIU_INT,newoffset,newoutoffset);CHKERRQ(ierr); 759785e854fSJed Brown ierr = PetscMalloc1(sf->nleaves,&newremote);CHKERRQ(ierr); 76095fce210SBarry Smith for (i=0; i<sf->nleaves; i++) { 76195fce210SBarry Smith newremote[i].rank = sf->remote[i].rank; 76201365b40SToby Isaac newremote[i].index = newoutoffset[sf->mine ? sf->mine[i] : i]; 76395fce210SBarry Smith } 76401365b40SToby Isaac ierr = PetscSFSetGraph(sf->multi,inoffset[sf->nroots],sf->nleaves,sf->mine,PETSC_COPY_VALUES,newremote,PETSC_OWN_POINTER);CHKERRQ(ierr); 76595fce210SBarry Smith ierr = PetscFree5(inranks,newoffset,outranks,newoutoffset,tmpoffset);CHKERRQ(ierr); 76695fce210SBarry Smith } 76795fce210SBarry Smith ierr = PetscFree3(inoffset,outones,outoffset);CHKERRQ(ierr); 76895fce210SBarry Smith } 76995fce210SBarry Smith *multi = sf->multi; 77095fce210SBarry Smith PetscFunctionReturn(0); 77195fce210SBarry Smith } 77295fce210SBarry Smith 77395fce210SBarry Smith /*@C 77495fce210SBarry Smith PetscSFCreateEmbeddedSF - removes edges from all but the selected roots, does not remap indices 77595fce210SBarry Smith 77695fce210SBarry Smith Collective 77795fce210SBarry Smith 77895fce210SBarry Smith Input Arguments: 77995fce210SBarry Smith + sf - original star forest 78095fce210SBarry Smith . nroots - number of roots to select on this process 78195fce210SBarry Smith - selected - selected roots on this process 78295fce210SBarry Smith 78395fce210SBarry Smith Output Arguments: 78495fce210SBarry Smith . newsf - new star forest 78595fce210SBarry Smith 78695fce210SBarry Smith Level: advanced 78795fce210SBarry Smith 78895fce210SBarry Smith Note: 78995fce210SBarry Smith To use the new PetscSF, it may be necessary to know the indices of the leaves that are still participating. This can 79095fce210SBarry Smith be done by calling PetscSFGetGraph(). 79195fce210SBarry Smith 79295fce210SBarry Smith .seealso: PetscSFSetGraph(), PetscSFGetGraph() 79395fce210SBarry Smith @*/ 79495fce210SBarry Smith PetscErrorCode PetscSFCreateEmbeddedSF(PetscSF sf,PetscInt nroots,const PetscInt *selected,PetscSF *newsf) 79595fce210SBarry Smith { 7960511a646SMatthew G. Knepley PetscInt *rootdata, *leafdata, *ilocal; 79795fce210SBarry Smith PetscSFNode *iremote; 798fc1ede2bSMatthew G. Knepley PetscInt leafsize = 0, nleaves = 0, n, i; 7990511a646SMatthew G. Knepley PetscErrorCode ierr; 80095fce210SBarry Smith 80195fce210SBarry Smith PetscFunctionBegin; 80295fce210SBarry Smith PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 80395fce210SBarry Smith if (nroots) PetscValidPointer(selected,3); 80495fce210SBarry Smith PetscValidPointer(newsf,4); 8050511a646SMatthew G. Knepley if (sf->mine) for (i = 0; i < sf->nleaves; ++i) {leafsize = PetscMax(leafsize, sf->mine[i]+1);} 8060511a646SMatthew G. Knepley else leafsize = sf->nleaves; 8071795a4d1SJed Brown ierr = PetscCalloc2(sf->nroots,&rootdata,leafsize,&leafdata);CHKERRQ(ierr); 8080511a646SMatthew G. Knepley for (i=0; i<nroots; ++i) rootdata[selected[i]] = 1; 80995fce210SBarry Smith ierr = PetscSFBcastBegin(sf,MPIU_INT,rootdata,leafdata);CHKERRQ(ierr); 81095fce210SBarry Smith ierr = PetscSFBcastEnd(sf,MPIU_INT,rootdata,leafdata);CHKERRQ(ierr); 81195fce210SBarry Smith 8120511a646SMatthew G. Knepley for (i = 0; i < leafsize; ++i) nleaves += leafdata[i]; 813785e854fSJed Brown ierr = PetscMalloc1(nleaves,&ilocal);CHKERRQ(ierr); 814785e854fSJed Brown ierr = PetscMalloc1(nleaves,&iremote);CHKERRQ(ierr); 815fc1ede2bSMatthew G. Knepley for (i = 0, n = 0; i < sf->nleaves; ++i) { 8160511a646SMatthew G. Knepley const PetscInt lidx = sf->mine ? sf->mine[i] : i; 8170511a646SMatthew G. Knepley 8180511a646SMatthew G. Knepley if (leafdata[lidx]) { 819fc1ede2bSMatthew G. Knepley ilocal[n] = lidx; 820fc1ede2bSMatthew G. Knepley iremote[n].rank = sf->remote[i].rank; 821fc1ede2bSMatthew G. Knepley iremote[n].index = sf->remote[i].index; 822fc1ede2bSMatthew G. Knepley ++n; 82395fce210SBarry Smith } 82495fce210SBarry Smith } 825fc1ede2bSMatthew G. Knepley if (n != nleaves) SETERRQ2(PETSC_COMM_SELF, PETSC_ERR_PLIB, "There is a size mismatch in the SF embedding, %d != %d", n, nleaves); 82695fce210SBarry Smith ierr = PetscSFDuplicate(sf,PETSCSF_DUPLICATE_RANKS,newsf);CHKERRQ(ierr); 82795fce210SBarry Smith ierr = PetscSFSetGraph(*newsf,sf->nroots,nleaves,ilocal,PETSC_OWN_POINTER,iremote,PETSC_OWN_POINTER);CHKERRQ(ierr); 82895fce210SBarry Smith ierr = PetscFree2(rootdata,leafdata);CHKERRQ(ierr); 82995fce210SBarry Smith PetscFunctionReturn(0); 83095fce210SBarry Smith } 83195fce210SBarry Smith 8322f5fb4c2SMatthew G. Knepley /*@C 8332f5fb4c2SMatthew G. Knepley PetscSFCreateEmbeddedLeafSF - removes edges from all but the selected leaves, does not remap indices 8342f5fb4c2SMatthew G. Knepley 8352f5fb4c2SMatthew G. Knepley Collective 8362f5fb4c2SMatthew G. Knepley 8372f5fb4c2SMatthew G. Knepley Input Arguments: 8382f5fb4c2SMatthew G. Knepley + sf - original star forest 8392f5fb4c2SMatthew G. Knepley . nleaves - number of leaves to select on this process 8402f5fb4c2SMatthew G. Knepley - selected - selected leaves on this process 8412f5fb4c2SMatthew G. Knepley 8422f5fb4c2SMatthew G. Knepley Output Arguments: 8432f5fb4c2SMatthew G. Knepley . newsf - new star forest 8442f5fb4c2SMatthew G. Knepley 8452f5fb4c2SMatthew G. Knepley Level: advanced 8462f5fb4c2SMatthew G. Knepley 8472f5fb4c2SMatthew G. Knepley .seealso: PetscSFCreateEmbeddedSF(), PetscSFSetGraph(), PetscSFGetGraph() 8482f5fb4c2SMatthew G. Knepley @*/ 8492f5fb4c2SMatthew G. Knepley PetscErrorCode PetscSFCreateEmbeddedLeafSF(PetscSF sf, PetscInt nleaves, const PetscInt *selected, PetscSF *newsf) 8502f5fb4c2SMatthew G. Knepley { 8512f5fb4c2SMatthew G. Knepley PetscSFNode *iremote; 8522f5fb4c2SMatthew G. Knepley PetscInt *ilocal; 8532f5fb4c2SMatthew G. Knepley PetscInt i; 8542f5fb4c2SMatthew G. Knepley PetscErrorCode ierr; 8552f5fb4c2SMatthew G. Knepley 8562f5fb4c2SMatthew G. Knepley PetscFunctionBegin; 8572f5fb4c2SMatthew G. Knepley PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 8582f5fb4c2SMatthew G. Knepley if (nleaves) PetscValidPointer(selected, 3); 8592f5fb4c2SMatthew G. Knepley PetscValidPointer(newsf, 4); 8602f5fb4c2SMatthew G. Knepley ierr = PetscMalloc1(nleaves, &ilocal);CHKERRQ(ierr); 8612f5fb4c2SMatthew G. Knepley ierr = PetscMalloc1(nleaves, &iremote);CHKERRQ(ierr); 8622f5fb4c2SMatthew G. Knepley for (i = 0; i < nleaves; ++i) { 8632f5fb4c2SMatthew G. Knepley const PetscInt l = selected[i]; 8642f5fb4c2SMatthew G. Knepley 8652f5fb4c2SMatthew G. Knepley ilocal[i] = sf->mine ? sf->mine[l] : l; 8662f5fb4c2SMatthew G. Knepley iremote[i].rank = sf->remote[l].rank; 8672f5fb4c2SMatthew G. Knepley iremote[i].index = sf->remote[l].index; 8682f5fb4c2SMatthew G. Knepley } 8692f5fb4c2SMatthew G. Knepley ierr = PetscSFDuplicate(sf, PETSCSF_DUPLICATE_RANKS, newsf);CHKERRQ(ierr); 8702f5fb4c2SMatthew G. Knepley ierr = PetscSFSetGraph(*newsf, sf->nroots, nleaves, ilocal, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER);CHKERRQ(ierr); 8712f5fb4c2SMatthew G. Knepley PetscFunctionReturn(0); 8722f5fb4c2SMatthew G. Knepley } 8732f5fb4c2SMatthew G. Knepley 87495fce210SBarry Smith /*@C 87595fce210SBarry Smith PetscSFBcastBegin - begin pointwise broadcast to be concluded with call to PetscSFBcastEnd() 87695fce210SBarry Smith 87795fce210SBarry Smith Collective on PetscSF 87895fce210SBarry Smith 87995fce210SBarry Smith Input Arguments: 88095fce210SBarry Smith + sf - star forest on which to communicate 88195fce210SBarry Smith . unit - data type associated with each node 88295fce210SBarry Smith - rootdata - buffer to broadcast 88395fce210SBarry Smith 88495fce210SBarry Smith Output Arguments: 88595fce210SBarry Smith . leafdata - buffer to update with values from each leaf's respective root 88695fce210SBarry Smith 88795fce210SBarry Smith Level: intermediate 88895fce210SBarry Smith 88995fce210SBarry Smith .seealso: PetscSFCreate(), PetscSFSetGraph(), PetscSFView(), PetscSFBcastEnd(), PetscSFReduceBegin() 89095fce210SBarry Smith @*/ 89195fce210SBarry Smith PetscErrorCode PetscSFBcastBegin(PetscSF sf,MPI_Datatype unit,const void *rootdata,void *leafdata) 89295fce210SBarry Smith { 89395fce210SBarry Smith PetscErrorCode ierr; 89495fce210SBarry Smith 89595fce210SBarry Smith PetscFunctionBegin; 89695fce210SBarry Smith PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 89795fce210SBarry Smith PetscSFCheckGraphSet(sf,1); 898563ffbabSMatthew G. Knepley ierr = PetscLogEventBegin(PETSCSF_BcastBegin,sf,0,0,0);CHKERRQ(ierr); 89995fce210SBarry Smith ierr = PetscSFSetUp(sf);CHKERRQ(ierr); 90095fce210SBarry Smith ierr = (*sf->ops->BcastBegin)(sf,unit,rootdata,leafdata);CHKERRQ(ierr); 901563ffbabSMatthew G. Knepley ierr = PetscLogEventEnd(PETSCSF_BcastBegin,sf,0,0,0);CHKERRQ(ierr); 90295fce210SBarry Smith PetscFunctionReturn(0); 90395fce210SBarry Smith } 90495fce210SBarry Smith 90595fce210SBarry Smith /*@C 90695fce210SBarry Smith PetscSFBcastEnd - end a broadcast operation started with PetscSFBcastBegin() 90795fce210SBarry Smith 90895fce210SBarry Smith Collective 90995fce210SBarry Smith 91095fce210SBarry Smith Input Arguments: 91195fce210SBarry Smith + sf - star forest 91295fce210SBarry Smith . unit - data type 91395fce210SBarry Smith - rootdata - buffer to broadcast 91495fce210SBarry Smith 91595fce210SBarry Smith Output Arguments: 91695fce210SBarry Smith . leafdata - buffer to update with values from each leaf's respective root 91795fce210SBarry Smith 91895fce210SBarry Smith Level: intermediate 91995fce210SBarry Smith 92095fce210SBarry Smith .seealso: PetscSFSetGraph(), PetscSFReduceEnd() 92195fce210SBarry Smith @*/ 92295fce210SBarry Smith PetscErrorCode PetscSFBcastEnd(PetscSF sf,MPI_Datatype unit,const void *rootdata,void *leafdata) 92395fce210SBarry Smith { 92495fce210SBarry Smith PetscErrorCode ierr; 92595fce210SBarry Smith 92695fce210SBarry Smith PetscFunctionBegin; 92795fce210SBarry Smith PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 92895fce210SBarry Smith PetscSFCheckGraphSet(sf,1); 929563ffbabSMatthew G. Knepley ierr = PetscLogEventBegin(PETSCSF_BcastEnd,sf,0,0,0);CHKERRQ(ierr); 93095fce210SBarry Smith ierr = PetscSFSetUp(sf);CHKERRQ(ierr); 93195fce210SBarry Smith ierr = (*sf->ops->BcastEnd)(sf,unit,rootdata,leafdata);CHKERRQ(ierr); 932563ffbabSMatthew G. Knepley ierr = PetscLogEventEnd(PETSCSF_BcastEnd,sf,0,0,0);CHKERRQ(ierr); 93395fce210SBarry Smith PetscFunctionReturn(0); 93495fce210SBarry Smith } 93595fce210SBarry Smith 93695fce210SBarry Smith /*@C 93795fce210SBarry Smith PetscSFReduceBegin - begin reduction of leafdata into rootdata, to be completed with call to PetscSFReduceEnd() 93895fce210SBarry Smith 93995fce210SBarry Smith Collective 94095fce210SBarry Smith 94195fce210SBarry Smith Input Arguments: 94295fce210SBarry Smith + sf - star forest 94395fce210SBarry Smith . unit - data type 94495fce210SBarry Smith . leafdata - values to reduce 94595fce210SBarry Smith - op - reduction operation 94695fce210SBarry Smith 94795fce210SBarry Smith Output Arguments: 94895fce210SBarry Smith . rootdata - result of reduction of values from all leaves of each root 94995fce210SBarry Smith 95095fce210SBarry Smith Level: intermediate 95195fce210SBarry Smith 95295fce210SBarry Smith .seealso: PetscSFBcastBegin() 95395fce210SBarry Smith @*/ 95495fce210SBarry Smith PetscErrorCode PetscSFReduceBegin(PetscSF sf,MPI_Datatype unit,const void *leafdata,void *rootdata,MPI_Op op) 95595fce210SBarry Smith { 95695fce210SBarry Smith PetscErrorCode ierr; 95795fce210SBarry Smith 95895fce210SBarry Smith PetscFunctionBegin; 95995fce210SBarry Smith PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 96095fce210SBarry Smith PetscSFCheckGraphSet(sf,1); 961563ffbabSMatthew G. Knepley ierr = PetscLogEventBegin(PETSCSF_ReduceBegin,sf,0,0,0);CHKERRQ(ierr); 96295fce210SBarry Smith ierr = PetscSFSetUp(sf);CHKERRQ(ierr); 96395fce210SBarry Smith ierr = (sf->ops->ReduceBegin)(sf,unit,leafdata,rootdata,op);CHKERRQ(ierr); 964563ffbabSMatthew G. Knepley ierr = PetscLogEventEnd(PETSCSF_ReduceBegin,sf,0,0,0);CHKERRQ(ierr); 96595fce210SBarry Smith PetscFunctionReturn(0); 96695fce210SBarry Smith } 96795fce210SBarry Smith 96895fce210SBarry Smith /*@C 96995fce210SBarry Smith PetscSFReduceEnd - end a reduction operation started with PetscSFReduceBegin() 97095fce210SBarry Smith 97195fce210SBarry Smith Collective 97295fce210SBarry Smith 97395fce210SBarry Smith Input Arguments: 97495fce210SBarry Smith + sf - star forest 97595fce210SBarry Smith . unit - data type 97695fce210SBarry Smith . leafdata - values to reduce 97795fce210SBarry Smith - op - reduction operation 97895fce210SBarry Smith 97995fce210SBarry Smith Output Arguments: 98095fce210SBarry Smith . rootdata - result of reduction of values from all leaves of each root 98195fce210SBarry Smith 98295fce210SBarry Smith Level: intermediate 98395fce210SBarry Smith 98495fce210SBarry Smith .seealso: PetscSFSetGraph(), PetscSFBcastEnd() 98595fce210SBarry Smith @*/ 98695fce210SBarry Smith PetscErrorCode PetscSFReduceEnd(PetscSF sf,MPI_Datatype unit,const void *leafdata,void *rootdata,MPI_Op op) 98795fce210SBarry Smith { 98895fce210SBarry Smith PetscErrorCode ierr; 98995fce210SBarry Smith 99095fce210SBarry Smith PetscFunctionBegin; 99195fce210SBarry Smith PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 99295fce210SBarry Smith PetscSFCheckGraphSet(sf,1); 993563ffbabSMatthew G. Knepley ierr = PetscLogEventBegin(PETSCSF_ReduceEnd,sf,0,0,0);CHKERRQ(ierr); 99495fce210SBarry Smith ierr = PetscSFSetUp(sf);CHKERRQ(ierr); 99595fce210SBarry Smith ierr = (*sf->ops->ReduceEnd)(sf,unit,leafdata,rootdata,op);CHKERRQ(ierr); 996563ffbabSMatthew G. Knepley ierr = PetscLogEventEnd(PETSCSF_ReduceEnd,sf,0,0,0);CHKERRQ(ierr); 99795fce210SBarry Smith PetscFunctionReturn(0); 99895fce210SBarry Smith } 99995fce210SBarry Smith 100095fce210SBarry Smith /*@C 100195fce210SBarry Smith PetscSFComputeDegreeBegin - begin computation of degree for each root vertex, to be completed with PetscSFComputeDegreeEnd() 100295fce210SBarry Smith 100395fce210SBarry Smith Collective 100495fce210SBarry Smith 100595fce210SBarry Smith Input Arguments: 100695fce210SBarry Smith . sf - star forest 100795fce210SBarry Smith 100895fce210SBarry Smith Output Arguments: 100995fce210SBarry Smith . degree - degree of each root vertex 101095fce210SBarry Smith 101195fce210SBarry Smith Level: advanced 101295fce210SBarry Smith 101395fce210SBarry Smith .seealso: PetscSFGatherBegin() 101495fce210SBarry Smith @*/ 101595fce210SBarry Smith PetscErrorCode PetscSFComputeDegreeBegin(PetscSF sf,const PetscInt **degree) 101695fce210SBarry Smith { 101795fce210SBarry Smith PetscErrorCode ierr; 101895fce210SBarry Smith 101995fce210SBarry Smith PetscFunctionBegin; 102095fce210SBarry Smith PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 102195fce210SBarry Smith PetscSFCheckGraphSet(sf,1); 102295fce210SBarry Smith PetscValidPointer(degree,2); 1023803bd9e8SMatthew G. Knepley if (!sf->degreeknown) { 10249837ea96SMatthew G. Knepley PetscInt i,maxlocal; 1025803bd9e8SMatthew G. Knepley if (sf->degree) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Calls to PetscSFComputeDegreeBegin() cannot be nested."); 10269837ea96SMatthew G. Knepley for (i=0,maxlocal=0; i<sf->nleaves; i++) maxlocal = PetscMax(maxlocal,(sf->mine ? sf->mine[i] : i)+1); 1027785e854fSJed Brown ierr = PetscMalloc1(sf->nroots,&sf->degree);CHKERRQ(ierr); 10289837ea96SMatthew G. Knepley ierr = PetscMalloc1(maxlocal,&sf->degreetmp);CHKERRQ(ierr); 102995fce210SBarry Smith for (i=0; i<sf->nroots; i++) sf->degree[i] = 0; 10309837ea96SMatthew G. Knepley for (i=0; i<maxlocal; i++) sf->degreetmp[i] = 1; 1031dbd2ff41SBarry Smith ierr = PetscSFReduceBegin(sf,MPIU_INT,sf->degreetmp,sf->degree,MPI_SUM);CHKERRQ(ierr); 103295fce210SBarry Smith } 103395fce210SBarry Smith *degree = NULL; 103495fce210SBarry Smith PetscFunctionReturn(0); 103595fce210SBarry Smith } 103695fce210SBarry Smith 103795fce210SBarry Smith /*@C 103895fce210SBarry Smith PetscSFComputeDegreeEnd - complete computation of degree for each root vertex, started with PetscSFComputeDegreeBegin() 103995fce210SBarry Smith 104095fce210SBarry Smith Collective 104195fce210SBarry Smith 104295fce210SBarry Smith Input Arguments: 104395fce210SBarry Smith . sf - star forest 104495fce210SBarry Smith 104595fce210SBarry Smith Output Arguments: 104695fce210SBarry Smith . degree - degree of each root vertex 104795fce210SBarry Smith 104895fce210SBarry Smith Level: developer 104995fce210SBarry Smith 105095fce210SBarry Smith .seealso: 105195fce210SBarry Smith @*/ 105295fce210SBarry Smith PetscErrorCode PetscSFComputeDegreeEnd(PetscSF sf,const PetscInt **degree) 105395fce210SBarry Smith { 105495fce210SBarry Smith PetscErrorCode ierr; 105595fce210SBarry Smith 105695fce210SBarry Smith PetscFunctionBegin; 105795fce210SBarry Smith PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 105895fce210SBarry Smith PetscSFCheckGraphSet(sf,1); 105995fce210SBarry Smith if (!sf->degreeknown) { 1060dbd2ff41SBarry Smith ierr = PetscSFReduceEnd(sf,MPIU_INT,sf->degreetmp,sf->degree,MPI_SUM);CHKERRQ(ierr); 106195fce210SBarry Smith ierr = PetscFree(sf->degreetmp);CHKERRQ(ierr); 106295fce210SBarry Smith 106395fce210SBarry Smith sf->degreeknown = PETSC_TRUE; 106495fce210SBarry Smith } 106595fce210SBarry Smith *degree = sf->degree; 106695fce210SBarry Smith PetscFunctionReturn(0); 106795fce210SBarry Smith } 106895fce210SBarry Smith 106995fce210SBarry Smith /*@C 107095fce210SBarry Smith PetscSFFetchAndOpBegin - begin operation that fetches values from root and updates atomically by applying operation using my leaf value, to be completed with PetscSFFetchAndOpEnd() 107195fce210SBarry Smith 107295fce210SBarry Smith Collective 107395fce210SBarry Smith 107495fce210SBarry Smith Input Arguments: 107595fce210SBarry Smith + sf - star forest 107695fce210SBarry Smith . unit - data type 107795fce210SBarry Smith . leafdata - leaf values to use in reduction 107895fce210SBarry Smith - op - operation to use for reduction 107995fce210SBarry Smith 108095fce210SBarry Smith Output Arguments: 108195fce210SBarry Smith + rootdata - root values to be updated, input state is seen by first process to perform an update 108295fce210SBarry Smith - leafupdate - state at each leaf's respective root immediately prior to my atomic update 108395fce210SBarry Smith 108495fce210SBarry Smith Level: advanced 108595fce210SBarry Smith 108695fce210SBarry Smith Note: 108795fce210SBarry Smith The update is only atomic at the granularity provided by the hardware. Different roots referenced by the same process 108895fce210SBarry Smith might be updated in a different order. Furthermore, if a composite type is used for the unit datatype, atomicity is 108995fce210SBarry Smith not guaranteed across the whole vertex. Therefore, this function is mostly only used with primitive types such as 109095fce210SBarry Smith integers. 109195fce210SBarry Smith 109295fce210SBarry Smith .seealso: PetscSFComputeDegreeBegin(), PetscSFReduceBegin(), PetscSFSetGraph() 109395fce210SBarry Smith @*/ 109495fce210SBarry Smith PetscErrorCode PetscSFFetchAndOpBegin(PetscSF sf,MPI_Datatype unit,void *rootdata,const void *leafdata,void *leafupdate,MPI_Op op) 109595fce210SBarry Smith { 109695fce210SBarry Smith PetscErrorCode ierr; 109795fce210SBarry Smith 109895fce210SBarry Smith PetscFunctionBegin; 109995fce210SBarry Smith PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 110095fce210SBarry Smith PetscSFCheckGraphSet(sf,1); 1101563ffbabSMatthew G. Knepley ierr = PetscLogEventBegin(PETSCSF_FetchAndOpBegin,sf,0,0,0);CHKERRQ(ierr); 110295fce210SBarry Smith ierr = PetscSFSetUp(sf);CHKERRQ(ierr); 110395fce210SBarry Smith ierr = (*sf->ops->FetchAndOpBegin)(sf,unit,rootdata,leafdata,leafupdate,op);CHKERRQ(ierr); 1104563ffbabSMatthew G. Knepley ierr = PetscLogEventEnd(PETSCSF_FetchAndOpBegin,sf,0,0,0);CHKERRQ(ierr); 110595fce210SBarry Smith PetscFunctionReturn(0); 110695fce210SBarry Smith } 110795fce210SBarry Smith 110895fce210SBarry Smith /*@C 110995fce210SBarry Smith PetscSFFetchAndOpEnd - end operation started in matching call to PetscSFFetchAndOpBegin() to fetch values from roots and update atomically by applying operation using my leaf value 111095fce210SBarry Smith 111195fce210SBarry Smith Collective 111295fce210SBarry Smith 111395fce210SBarry Smith Input Arguments: 111495fce210SBarry Smith + sf - star forest 111595fce210SBarry Smith . unit - data type 111695fce210SBarry Smith . leafdata - leaf values to use in reduction 111795fce210SBarry Smith - op - operation to use for reduction 111895fce210SBarry Smith 111995fce210SBarry Smith Output Arguments: 112095fce210SBarry Smith + rootdata - root values to be updated, input state is seen by first process to perform an update 112195fce210SBarry Smith - leafupdate - state at each leaf's respective root immediately prior to my atomic update 112295fce210SBarry Smith 112395fce210SBarry Smith Level: advanced 112495fce210SBarry Smith 112595fce210SBarry Smith .seealso: PetscSFComputeDegreeEnd(), PetscSFReduceEnd(), PetscSFSetGraph() 112695fce210SBarry Smith @*/ 112795fce210SBarry Smith PetscErrorCode PetscSFFetchAndOpEnd(PetscSF sf,MPI_Datatype unit,void *rootdata,const void *leafdata,void *leafupdate,MPI_Op op) 112895fce210SBarry Smith { 112995fce210SBarry Smith PetscErrorCode ierr; 113095fce210SBarry Smith 113195fce210SBarry Smith PetscFunctionBegin; 113295fce210SBarry Smith PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 113395fce210SBarry Smith PetscSFCheckGraphSet(sf,1); 1134563ffbabSMatthew G. Knepley ierr = PetscLogEventBegin(PETSCSF_FetchAndOpEnd,sf,0,0,0);CHKERRQ(ierr); 113595fce210SBarry Smith ierr = PetscSFSetUp(sf);CHKERRQ(ierr); 113695fce210SBarry Smith ierr = (*sf->ops->FetchAndOpEnd)(sf,unit,rootdata,leafdata,leafupdate,op);CHKERRQ(ierr); 1137563ffbabSMatthew G. Knepley ierr = PetscLogEventEnd(PETSCSF_FetchAndOpEnd,sf,0,0,0);CHKERRQ(ierr); 113895fce210SBarry Smith PetscFunctionReturn(0); 113995fce210SBarry Smith } 114095fce210SBarry Smith 114195fce210SBarry Smith /*@C 114295fce210SBarry Smith PetscSFGatherBegin - begin pointwise gather of all leaves into multi-roots, to be completed with PetscSFGatherEnd() 114395fce210SBarry Smith 114495fce210SBarry Smith Collective 114595fce210SBarry Smith 114695fce210SBarry Smith Input Arguments: 114795fce210SBarry Smith + sf - star forest 114895fce210SBarry Smith . unit - data type 114995fce210SBarry Smith - leafdata - leaf data to gather to roots 115095fce210SBarry Smith 115195fce210SBarry Smith Output Argument: 115295fce210SBarry Smith . multirootdata - root buffer to gather into, amount of space per root is equal to its degree 115395fce210SBarry Smith 115495fce210SBarry Smith Level: intermediate 115595fce210SBarry Smith 115695fce210SBarry Smith .seealso: PetscSFComputeDegreeBegin(), PetscSFScatterBegin() 115795fce210SBarry Smith @*/ 115895fce210SBarry Smith PetscErrorCode PetscSFGatherBegin(PetscSF sf,MPI_Datatype unit,const void *leafdata,void *multirootdata) 115995fce210SBarry Smith { 116095fce210SBarry Smith PetscErrorCode ierr; 116195fce210SBarry Smith PetscSF multi; 116295fce210SBarry Smith 116395fce210SBarry Smith PetscFunctionBegin; 116495fce210SBarry Smith PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 116595fce210SBarry Smith ierr = PetscSFGetMultiSF(sf,&multi);CHKERRQ(ierr); 11668bfbc91cSJed Brown ierr = PetscSFReduceBegin(multi,unit,leafdata,multirootdata,MPIU_REPLACE);CHKERRQ(ierr); 116795fce210SBarry Smith PetscFunctionReturn(0); 116895fce210SBarry Smith } 116995fce210SBarry Smith 117095fce210SBarry Smith /*@C 117195fce210SBarry Smith PetscSFGatherEnd - ends pointwise gather operation that was started with PetscSFGatherBegin() 117295fce210SBarry Smith 117395fce210SBarry Smith Collective 117495fce210SBarry Smith 117595fce210SBarry Smith Input Arguments: 117695fce210SBarry Smith + sf - star forest 117795fce210SBarry Smith . unit - data type 117895fce210SBarry Smith - leafdata - leaf data to gather to roots 117995fce210SBarry Smith 118095fce210SBarry Smith Output Argument: 118195fce210SBarry Smith . multirootdata - root buffer to gather into, amount of space per root is equal to its degree 118295fce210SBarry Smith 118395fce210SBarry Smith Level: intermediate 118495fce210SBarry Smith 118595fce210SBarry Smith .seealso: PetscSFComputeDegreeEnd(), PetscSFScatterEnd() 118695fce210SBarry Smith @*/ 118795fce210SBarry Smith PetscErrorCode PetscSFGatherEnd(PetscSF sf,MPI_Datatype unit,const void *leafdata,void *multirootdata) 118895fce210SBarry Smith { 118995fce210SBarry Smith PetscErrorCode ierr; 119095fce210SBarry Smith PetscSF multi; 119195fce210SBarry Smith 119295fce210SBarry Smith PetscFunctionBegin; 119395fce210SBarry Smith PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 119495fce210SBarry Smith PetscSFCheckGraphSet(sf,1); 119595fce210SBarry Smith ierr = PetscSFSetUp(sf);CHKERRQ(ierr); 119695fce210SBarry Smith ierr = PetscSFGetMultiSF(sf,&multi);CHKERRQ(ierr); 11978bfbc91cSJed Brown ierr = PetscSFReduceEnd(multi,unit,leafdata,multirootdata,MPIU_REPLACE);CHKERRQ(ierr); 119895fce210SBarry Smith PetscFunctionReturn(0); 119995fce210SBarry Smith } 120095fce210SBarry Smith 120195fce210SBarry Smith /*@C 120295fce210SBarry Smith PetscSFScatterBegin - begin pointwise scatter operation from multi-roots to leaves, to be completed with PetscSFScatterEnd() 120395fce210SBarry Smith 120495fce210SBarry Smith Collective 120595fce210SBarry Smith 120695fce210SBarry Smith Input Arguments: 120795fce210SBarry Smith + sf - star forest 120895fce210SBarry Smith . unit - data type 120995fce210SBarry Smith - multirootdata - root buffer to send to each leaf, one unit of data per leaf 121095fce210SBarry Smith 121195fce210SBarry Smith Output Argument: 121295fce210SBarry Smith . leafdata - leaf data to be update with personal data from each respective root 121395fce210SBarry Smith 121495fce210SBarry Smith Level: intermediate 121595fce210SBarry Smith 121695fce210SBarry Smith .seealso: PetscSFComputeDegreeBegin(), PetscSFScatterBegin() 121795fce210SBarry Smith @*/ 121895fce210SBarry Smith PetscErrorCode PetscSFScatterBegin(PetscSF sf,MPI_Datatype unit,const void *multirootdata,void *leafdata) 121995fce210SBarry Smith { 122095fce210SBarry Smith PetscErrorCode ierr; 122195fce210SBarry Smith PetscSF multi; 122295fce210SBarry Smith 122395fce210SBarry Smith PetscFunctionBegin; 122495fce210SBarry Smith PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 122595fce210SBarry Smith PetscSFCheckGraphSet(sf,1); 122695fce210SBarry Smith ierr = PetscSFSetUp(sf);CHKERRQ(ierr); 122795fce210SBarry Smith ierr = PetscSFGetMultiSF(sf,&multi);CHKERRQ(ierr); 122895fce210SBarry Smith ierr = PetscSFBcastBegin(multi,unit,multirootdata,leafdata);CHKERRQ(ierr); 122995fce210SBarry Smith PetscFunctionReturn(0); 123095fce210SBarry Smith } 123195fce210SBarry Smith 123295fce210SBarry Smith /*@C 123395fce210SBarry Smith PetscSFScatterEnd - ends pointwise scatter operation that was started with PetscSFScatterBegin() 123495fce210SBarry Smith 123595fce210SBarry Smith Collective 123695fce210SBarry Smith 123795fce210SBarry Smith Input Arguments: 123895fce210SBarry Smith + sf - star forest 123995fce210SBarry Smith . unit - data type 124095fce210SBarry Smith - multirootdata - root buffer to send to each leaf, one unit of data per leaf 124195fce210SBarry Smith 124295fce210SBarry Smith Output Argument: 124395fce210SBarry Smith . leafdata - leaf data to be update with personal data from each respective root 124495fce210SBarry Smith 124595fce210SBarry Smith Level: intermediate 124695fce210SBarry Smith 124795fce210SBarry Smith .seealso: PetscSFComputeDegreeEnd(), PetscSFScatterEnd() 124895fce210SBarry Smith @*/ 124995fce210SBarry Smith PetscErrorCode PetscSFScatterEnd(PetscSF sf,MPI_Datatype unit,const void *multirootdata,void *leafdata) 125095fce210SBarry Smith { 125195fce210SBarry Smith PetscErrorCode ierr; 125295fce210SBarry Smith PetscSF multi; 125395fce210SBarry Smith 125495fce210SBarry Smith PetscFunctionBegin; 125595fce210SBarry Smith PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 125695fce210SBarry Smith PetscSFCheckGraphSet(sf,1); 125795fce210SBarry Smith ierr = PetscSFSetUp(sf);CHKERRQ(ierr); 125895fce210SBarry Smith ierr = PetscSFGetMultiSF(sf,&multi);CHKERRQ(ierr); 125995fce210SBarry Smith ierr = PetscSFBcastEnd(multi,unit,multirootdata,leafdata);CHKERRQ(ierr); 126095fce210SBarry Smith PetscFunctionReturn(0); 126195fce210SBarry Smith } 1262a7b3aa13SAta Mesgarnejad 1263a7b3aa13SAta Mesgarnejad /*@ 1264a7b3aa13SAta Mesgarnejad PetscSFCompose - Compose a new PetscSF equivalent to action to PetscSFs 1265a7b3aa13SAta Mesgarnejad 1266a7b3aa13SAta Mesgarnejad Input Parameters: 1267a7b3aa13SAta Mesgarnejad + sfA - The first PetscSF 1268a7b3aa13SAta Mesgarnejad - sfB - The second PetscSF 1269a7b3aa13SAta Mesgarnejad 1270a7b3aa13SAta Mesgarnejad Output Parameters: 1271a7b3aa13SAta Mesgarnejad . sfBA - equvalent PetscSF for applying A then B 1272a7b3aa13SAta Mesgarnejad 1273a7b3aa13SAta Mesgarnejad Level: developer 1274a7b3aa13SAta Mesgarnejad 1275a7b3aa13SAta Mesgarnejad .seealso: PetscSF, PetscSFGetGraph(), PetscSFSetGraph() 1276a7b3aa13SAta Mesgarnejad @*/ 1277a7b3aa13SAta Mesgarnejad PetscErrorCode PetscSFCompose(PetscSF sfA, PetscSF sfB, PetscSF *sfBA) 1278a7b3aa13SAta Mesgarnejad { 1279a7b3aa13SAta Mesgarnejad MPI_Comm comm; 1280a7b3aa13SAta Mesgarnejad const PetscSFNode *remotePointsA, *remotePointsB; 1281a7b3aa13SAta Mesgarnejad PetscSFNode *remotePointsBA; 1282a7b3aa13SAta Mesgarnejad const PetscInt *localPointsA, *localPointsB; 1283a7b3aa13SAta Mesgarnejad PetscInt numRootsA, numLeavesA, numRootsB, numLeavesB; 1284a7b3aa13SAta Mesgarnejad PetscErrorCode ierr; 1285a7b3aa13SAta Mesgarnejad 1286a7b3aa13SAta Mesgarnejad PetscFunctionBegin; 1287a7b3aa13SAta Mesgarnejad PetscValidHeaderSpecific(sfA, PETSCSF_CLASSID, 1); 1288a7b3aa13SAta Mesgarnejad PetscValidHeaderSpecific(sfB, PETSCSF_CLASSID, 1); 1289a7b3aa13SAta Mesgarnejad ierr = PetscObjectGetComm((PetscObject) sfA, &comm);CHKERRQ(ierr); 1290a7b3aa13SAta Mesgarnejad ierr = PetscSFGetGraph(sfA, &numRootsA, &numLeavesA, &localPointsA, &remotePointsA);CHKERRQ(ierr); 1291a7b3aa13SAta Mesgarnejad ierr = PetscSFGetGraph(sfB, &numRootsB, &numLeavesB, &localPointsB, &remotePointsB);CHKERRQ(ierr); 1292a7b3aa13SAta Mesgarnejad ierr = PetscMalloc1(numLeavesB, &remotePointsBA);CHKERRQ(ierr); 1293a7b3aa13SAta Mesgarnejad ierr = PetscSFBcastBegin(sfB, MPIU_2INT, remotePointsA, remotePointsBA);CHKERRQ(ierr); 1294a7b3aa13SAta Mesgarnejad ierr = PetscSFBcastEnd(sfB, MPIU_2INT, remotePointsA, remotePointsBA);CHKERRQ(ierr); 1295a7b3aa13SAta Mesgarnejad ierr = PetscSFCreate(comm, sfBA);CHKERRQ(ierr); 1296a7b3aa13SAta Mesgarnejad ierr = PetscSFSetGraph(*sfBA, numRootsA, numLeavesB, localPointsB, PETSC_COPY_VALUES, remotePointsBA, PETSC_OWN_POINTER);CHKERRQ(ierr); 1297a7b3aa13SAta Mesgarnejad PetscFunctionReturn(0); 1298a7b3aa13SAta Mesgarnejad } 1299