1af0996ceSBarry Smith #include <petsc/private/sfimpl.h> /*I "petscsf.h" I*/ 2c4e6a40aSLawrence Mitchell #include <petsc/private/hashseti.h> 353dd6d7dSJunchao Zhang #include <petsc/private/viewerimpl.h> 4eec179cfSJacob Faibussowitsch #include <petsc/private/hashmapi.h> 595fce210SBarry Smith 67fd2d3dbSJunchao Zhang #if defined(PETSC_HAVE_CUDA) 7715b587bSJunchao Zhang #include <petscdevice_cuda.h> 87fd2d3dbSJunchao Zhang #endif 97fd2d3dbSJunchao Zhang 107fd2d3dbSJunchao Zhang #if defined(PETSC_HAVE_HIP) 117fd2d3dbSJunchao Zhang #include <hip/hip_runtime.h> 127fd2d3dbSJunchao Zhang #endif 137fd2d3dbSJunchao Zhang 142abc8c78SJacob Faibussowitsch #if defined(PETSC_CLANG_STATIC_ANALYZER) 154bf303faSJacob Faibussowitsch extern void PetscSFCheckGraphSet(PetscSF, int); 162abc8c78SJacob Faibussowitsch #else 1795fce210SBarry Smith #if defined(PETSC_USE_DEBUG) 18a8f51744SPierre Jolivet #define PetscSFCheckGraphSet(sf, arg) PetscCheck((sf)->graphset, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Must call PetscSFSetGraph() or PetscSFSetGraphWithPattern() on argument %d \"%s\" before %s()", (arg), #sf, PETSC_FUNCTION_NAME) 1995fce210SBarry Smith #else 209371c9d4SSatish Balay #define PetscSFCheckGraphSet(sf, arg) \ 219371c9d4SSatish Balay do { \ 229371c9d4SSatish Balay } while (0) 2395fce210SBarry Smith #endif 242abc8c78SJacob Faibussowitsch #endif 2595fce210SBarry Smith 264c8fdceaSLisandro Dalcin const char *const PetscSFDuplicateOptions[] = {"CONFONLY", "RANKS", "GRAPH", "PetscSFDuplicateOption", "PETSCSF_DUPLICATE_", NULL}; 271f40158dSVaclav Hapla const char *const PetscSFConcatenateRootModes[] = {"local", "shared", "global", "PetscSFConcatenateRootMode", "PETSCSF_CONCATENATE_ROOTMODE_", NULL}; 2895fce210SBarry Smith 298af6ec1cSBarry Smith /*@ 3095fce210SBarry Smith PetscSFCreate - create a star forest communication context 3195fce210SBarry Smith 32d083f849SBarry Smith Collective 3395fce210SBarry Smith 344165533cSJose E. Roman Input Parameter: 3595fce210SBarry Smith . comm - communicator on which the star forest will operate 3695fce210SBarry Smith 374165533cSJose E. Roman Output Parameter: 3895fce210SBarry Smith . sf - new star forest context 3995fce210SBarry Smith 4020662ed9SBarry Smith Options Database Key: 416677b1c1SJunchao Zhang + -sf_type basic - Use MPI persistent Isend/Irecv for communication (Default) 426677b1c1SJunchao Zhang . -sf_type window - Use MPI-3 one-sided window for communication 436677b1c1SJunchao Zhang . -sf_type neighbor - Use MPI-3 neighborhood collectives for communication 446677b1c1SJunchao Zhang - -sf_neighbor_persistent <bool> - If true, use MPI-4 persistent neighborhood collectives for communication (used along with -sf_type neighbor) 45dd5b3ca6SJunchao Zhang 4695fce210SBarry Smith Level: intermediate 4795fce210SBarry Smith 48cab54364SBarry Smith Note: 49cab54364SBarry Smith When one knows the communication graph is one of the predefined graph, such as `MPI_Alltoall()`, `MPI_Allgatherv()`, 50cab54364SBarry Smith `MPI_Gatherv()`, one can create a `PetscSF` and then set its graph with `PetscSFSetGraphWithPattern()`. These special 5120662ed9SBarry Smith `SF`s are optimized and they have better performance than the general `SF`s. 52dd5b3ca6SJunchao Zhang 5338b5cf2dSJacob Faibussowitsch .seealso: `PetscSF`, `PetscSFSetType`, `PetscSFSetGraph()`, `PetscSFSetGraphWithPattern()`, `PetscSFDestroy()` 5495fce210SBarry Smith @*/ 55d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFCreate(MPI_Comm comm, PetscSF *sf) 56d71ae5a4SJacob Faibussowitsch { 5795fce210SBarry Smith PetscSF b; 5895fce210SBarry Smith 5995fce210SBarry Smith PetscFunctionBegin; 604f572ea9SToby Isaac PetscAssertPointer(sf, 2); 619566063dSJacob Faibussowitsch PetscCall(PetscSFInitializePackage()); 6295fce210SBarry Smith 639566063dSJacob Faibussowitsch PetscCall(PetscHeaderCreate(b, PETSCSF_CLASSID, "PetscSF", "Star Forest", "PetscSF", comm, PetscSFDestroy, PetscSFView)); 6495fce210SBarry Smith b->nroots = -1; 6595fce210SBarry Smith b->nleaves = -1; 661690c2aeSBarry Smith b->minleaf = PETSC_INT_MAX; 671690c2aeSBarry Smith b->maxleaf = PETSC_INT_MIN; 6895fce210SBarry Smith b->nranks = -1; 6995fce210SBarry Smith b->rankorder = PETSC_TRUE; 7095fce210SBarry Smith b->ingroup = MPI_GROUP_NULL; 7195fce210SBarry Smith b->outgroup = MPI_GROUP_NULL; 7295fce210SBarry Smith b->graphset = PETSC_FALSE; 7320c24465SJunchao Zhang #if defined(PETSC_HAVE_DEVICE) 7420c24465SJunchao Zhang b->use_gpu_aware_mpi = use_gpu_aware_mpi; 7520c24465SJunchao Zhang b->use_stream_aware_mpi = PETSC_FALSE; 7671438e86SJunchao Zhang b->unknown_input_stream = PETSC_FALSE; 7727f636e8SJunchao Zhang #if defined(PETSC_HAVE_KOKKOS) /* Prefer kokkos over cuda*/ 7820c24465SJunchao Zhang b->backend = PETSCSF_BACKEND_KOKKOS; 7927f636e8SJunchao Zhang #elif defined(PETSC_HAVE_CUDA) 8027f636e8SJunchao Zhang b->backend = PETSCSF_BACKEND_CUDA; 8159af0bd3SScott Kruger #elif defined(PETSC_HAVE_HIP) 8259af0bd3SScott Kruger b->backend = PETSCSF_BACKEND_HIP; 8320c24465SJunchao Zhang #endif 8471438e86SJunchao Zhang 8571438e86SJunchao Zhang #if defined(PETSC_HAVE_NVSHMEM) 8671438e86SJunchao Zhang b->use_nvshmem = PETSC_FALSE; /* Default is not to try NVSHMEM */ 8771438e86SJunchao Zhang b->use_nvshmem_get = PETSC_FALSE; /* Default is to use nvshmem_put based protocol */ 889566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetBool(NULL, NULL, "-use_nvshmem", &b->use_nvshmem, NULL)); 899566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetBool(NULL, NULL, "-use_nvshmem_get", &b->use_nvshmem_get, NULL)); 9071438e86SJunchao Zhang #endif 9120c24465SJunchao Zhang #endif 9260c22052SBarry Smith b->vscat.from_n = -1; 9360c22052SBarry Smith b->vscat.to_n = -1; 9460c22052SBarry Smith b->vscat.unit = MPIU_SCALAR; 9595fce210SBarry Smith *sf = b; 963ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 9795fce210SBarry Smith } 9895fce210SBarry Smith 9929046d53SLisandro Dalcin /*@ 10095fce210SBarry Smith PetscSFReset - Reset a star forest so that different sizes or neighbors can be used 10195fce210SBarry Smith 10295fce210SBarry Smith Collective 10395fce210SBarry Smith 1044165533cSJose E. Roman Input Parameter: 10595fce210SBarry Smith . sf - star forest 10695fce210SBarry Smith 10795fce210SBarry Smith Level: advanced 10895fce210SBarry Smith 109cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFCreate()`, `PetscSFSetGraph()`, `PetscSFDestroy()` 11095fce210SBarry Smith @*/ 111d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFReset(PetscSF sf) 112d71ae5a4SJacob Faibussowitsch { 11395fce210SBarry Smith PetscFunctionBegin; 11495fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 115dbbe0bcdSBarry Smith PetscTryTypeMethod(sf, Reset); 1160dd791a8SStefano Zampini PetscCall(PetscSFDestroy(&sf->rankssf)); 1170dd791a8SStefano Zampini 11829046d53SLisandro Dalcin sf->nroots = -1; 11929046d53SLisandro Dalcin sf->nleaves = -1; 1201690c2aeSBarry Smith sf->minleaf = PETSC_INT_MAX; 1211690c2aeSBarry Smith sf->maxleaf = PETSC_INT_MIN; 12295fce210SBarry Smith sf->mine = NULL; 12395fce210SBarry Smith sf->remote = NULL; 12429046d53SLisandro Dalcin sf->graphset = PETSC_FALSE; 1259566063dSJacob Faibussowitsch PetscCall(PetscFree(sf->mine_alloc)); 1269566063dSJacob Faibussowitsch PetscCall(PetscFree(sf->remote_alloc)); 12721c688dcSJed Brown sf->nranks = -1; 1289566063dSJacob Faibussowitsch PetscCall(PetscFree4(sf->ranks, sf->roffset, sf->rmine, sf->rremote)); 12929046d53SLisandro Dalcin sf->degreeknown = PETSC_FALSE; 1309566063dSJacob Faibussowitsch PetscCall(PetscFree(sf->degree)); 1319566063dSJacob Faibussowitsch if (sf->ingroup != MPI_GROUP_NULL) PetscCallMPI(MPI_Group_free(&sf->ingroup)); 1329566063dSJacob Faibussowitsch if (sf->outgroup != MPI_GROUP_NULL) PetscCallMPI(MPI_Group_free(&sf->outgroup)); 1330dd791a8SStefano Zampini 134013b3241SStefano Zampini if (sf->multi) sf->multi->multi = NULL; 1359566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf->multi)); 1360dd791a8SStefano Zampini 1379566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&sf->map)); 13871438e86SJunchao Zhang 13971438e86SJunchao Zhang #if defined(PETSC_HAVE_DEVICE) 1409566063dSJacob Faibussowitsch for (PetscInt i = 0; i < 2; i++) PetscCall(PetscSFFree(sf, PETSC_MEMTYPE_DEVICE, sf->rmine_d[i])); 14171438e86SJunchao Zhang #endif 14271438e86SJunchao Zhang 14395fce210SBarry Smith sf->setupcalled = PETSC_FALSE; 1443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14595fce210SBarry Smith } 14695fce210SBarry Smith 147cc4c1da9SBarry Smith /*@ 148cab54364SBarry Smith PetscSFSetType - Set the `PetscSF` communication implementation 14995fce210SBarry Smith 150c3339decSBarry Smith Collective 15195fce210SBarry Smith 15295fce210SBarry Smith Input Parameters: 153cab54364SBarry Smith + sf - the `PetscSF` context 15495fce210SBarry Smith - type - a known method 155cab54364SBarry Smith .vb 156cab54364SBarry Smith PETSCSFWINDOW - MPI-2/3 one-sided 157cab54364SBarry Smith PETSCSFBASIC - basic implementation using MPI-1 two-sided 158cab54364SBarry Smith .ve 15995fce210SBarry Smith 16095fce210SBarry Smith Options Database Key: 16120662ed9SBarry Smith . -sf_type <type> - Sets the method; for example `basic` or `window` use -help for a list of available methods 162cab54364SBarry Smith 163cab54364SBarry Smith Level: intermediate 16495fce210SBarry Smith 16595fce210SBarry Smith Notes: 16620662ed9SBarry Smith See `PetscSFType` for possible values 16795fce210SBarry Smith 16820662ed9SBarry Smith .seealso: `PetscSF`, `PetscSFType`, `PetscSFCreate()` 16995fce210SBarry Smith @*/ 170d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFSetType(PetscSF sf, PetscSFType type) 171d71ae5a4SJacob Faibussowitsch { 17295fce210SBarry Smith PetscBool match; 1735f80ce2aSJacob Faibussowitsch PetscErrorCode (*r)(PetscSF); 17495fce210SBarry Smith 17595fce210SBarry Smith PetscFunctionBegin; 17695fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 1774f572ea9SToby Isaac PetscAssertPointer(type, 2); 17895fce210SBarry Smith 1799566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)sf, type, &match)); 1803ba16761SJacob Faibussowitsch if (match) PetscFunctionReturn(PETSC_SUCCESS); 18195fce210SBarry Smith 1829566063dSJacob Faibussowitsch PetscCall(PetscFunctionListFind(PetscSFList, type, &r)); 1836adde796SStefano Zampini PetscCheck(r, PetscObjectComm((PetscObject)sf), PETSC_ERR_ARG_UNKNOWN_TYPE, "Unable to find requested PetscSF type %s", type); 18429046d53SLisandro Dalcin /* Destroy the previous PetscSF implementation context */ 185dbbe0bcdSBarry Smith PetscTryTypeMethod(sf, Destroy); 1869566063dSJacob Faibussowitsch PetscCall(PetscMemzero(sf->ops, sizeof(*sf->ops))); 1879566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)sf, type)); 1889566063dSJacob Faibussowitsch PetscCall((*r)(sf)); 1893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 19095fce210SBarry Smith } 19195fce210SBarry Smith 192cc4c1da9SBarry Smith /*@ 193cab54364SBarry Smith PetscSFGetType - Get the `PetscSF` communication implementation 19429046d53SLisandro Dalcin 19529046d53SLisandro Dalcin Not Collective 19629046d53SLisandro Dalcin 19729046d53SLisandro Dalcin Input Parameter: 198cab54364SBarry Smith . sf - the `PetscSF` context 19929046d53SLisandro Dalcin 20029046d53SLisandro Dalcin Output Parameter: 201cab54364SBarry Smith . type - the `PetscSF` type name 20229046d53SLisandro Dalcin 20329046d53SLisandro Dalcin Level: intermediate 20429046d53SLisandro Dalcin 20520662ed9SBarry Smith .seealso: `PetscSF`, `PetscSFType`, `PetscSFSetType()`, `PetscSFCreate()` 20629046d53SLisandro Dalcin @*/ 207d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFGetType(PetscSF sf, PetscSFType *type) 208d71ae5a4SJacob Faibussowitsch { 20929046d53SLisandro Dalcin PetscFunctionBegin; 21029046d53SLisandro Dalcin PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 2114f572ea9SToby Isaac PetscAssertPointer(type, 2); 21229046d53SLisandro Dalcin *type = ((PetscObject)sf)->type_name; 2133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 21429046d53SLisandro Dalcin } 21529046d53SLisandro Dalcin 2160764c050SBarry Smith /*@ 21720662ed9SBarry Smith PetscSFDestroy - destroy a star forest 21895fce210SBarry Smith 21995fce210SBarry Smith Collective 22095fce210SBarry Smith 2214165533cSJose E. Roman Input Parameter: 22295fce210SBarry Smith . sf - address of star forest 22395fce210SBarry Smith 22495fce210SBarry Smith Level: intermediate 22595fce210SBarry Smith 22620662ed9SBarry Smith .seealso: `PetscSF`, `PetscSFType`, `PetscSFCreate()`, `PetscSFReset()` 22795fce210SBarry Smith @*/ 228d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFDestroy(PetscSF *sf) 229d71ae5a4SJacob Faibussowitsch { 23095fce210SBarry Smith PetscFunctionBegin; 2313ba16761SJacob Faibussowitsch if (!*sf) PetscFunctionReturn(PETSC_SUCCESS); 232f4f49eeaSPierre Jolivet PetscValidHeaderSpecific(*sf, PETSCSF_CLASSID, 1); 233f4f49eeaSPierre Jolivet if (--((PetscObject)*sf)->refct > 0) { 2349371c9d4SSatish Balay *sf = NULL; 2353ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2369371c9d4SSatish Balay } 2379566063dSJacob Faibussowitsch PetscCall(PetscSFReset(*sf)); 238f4f49eeaSPierre Jolivet PetscTryTypeMethod(*sf, Destroy); 2399566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&(*sf)->vscat.lsf)); 2409566063dSJacob Faibussowitsch if ((*sf)->vscat.bs > 1) PetscCallMPI(MPI_Type_free(&(*sf)->vscat.unit)); 241c02794c0SJunchao Zhang #if defined(PETSC_HAVE_CUDA) && defined(PETSC_HAVE_MPIX_STREAM) 242715b587bSJunchao Zhang if ((*sf)->use_stream_aware_mpi) { 243715b587bSJunchao Zhang PetscCallMPI(MPIX_Stream_free(&(*sf)->mpi_stream)); 244715b587bSJunchao Zhang PetscCallMPI(MPI_Comm_free(&(*sf)->stream_comm)); 245715b587bSJunchao Zhang } 246715b587bSJunchao Zhang #endif 2479566063dSJacob Faibussowitsch PetscCall(PetscHeaderDestroy(sf)); 2483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 24995fce210SBarry Smith } 25095fce210SBarry Smith 251d71ae5a4SJacob Faibussowitsch static PetscErrorCode PetscSFCheckGraphValid_Private(PetscSF sf) 252d71ae5a4SJacob Faibussowitsch { 253c4e6a40aSLawrence Mitchell PetscInt i, nleaves; 254c4e6a40aSLawrence Mitchell PetscMPIInt size; 255c4e6a40aSLawrence Mitchell const PetscInt *ilocal; 256c4e6a40aSLawrence Mitchell const PetscSFNode *iremote; 257c4e6a40aSLawrence Mitchell 258c4e6a40aSLawrence Mitchell PetscFunctionBegin; 2593ba16761SJacob Faibussowitsch if (!sf->graphset || !PetscDefined(USE_DEBUG)) PetscFunctionReturn(PETSC_SUCCESS); 2609566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sf, NULL, &nleaves, &ilocal, &iremote)); 2619566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)sf), &size)); 262c4e6a40aSLawrence Mitchell for (i = 0; i < nleaves; i++) { 263c4e6a40aSLawrence Mitchell const PetscInt rank = iremote[i].rank; 264c4e6a40aSLawrence Mitchell const PetscInt remote = iremote[i].index; 265c4e6a40aSLawrence Mitchell const PetscInt leaf = ilocal ? ilocal[i] : i; 266c9cc58a2SBarry Smith PetscCheck(rank >= 0 && rank < size, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Provided rank (%" PetscInt_FMT ") for remote %" PetscInt_FMT " is invalid, should be in [0, %d)", rank, i, size); 26708401ef6SPierre Jolivet PetscCheck(remote >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Provided index (%" PetscInt_FMT ") for remote %" PetscInt_FMT " is invalid, should be >= 0", remote, i); 26808401ef6SPierre Jolivet PetscCheck(leaf >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Provided location (%" PetscInt_FMT ") for leaf %" PetscInt_FMT " is invalid, should be >= 0", leaf, i); 269c4e6a40aSLawrence Mitchell } 2703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 271c4e6a40aSLawrence Mitchell } 272c4e6a40aSLawrence Mitchell 27395fce210SBarry Smith /*@ 27420662ed9SBarry Smith PetscSFSetUp - set up communication structures for a `PetscSF`, after this is done it may be used to perform communication 27595fce210SBarry Smith 27695fce210SBarry Smith Collective 27795fce210SBarry Smith 2784165533cSJose E. Roman Input Parameter: 27995fce210SBarry Smith . sf - star forest communication object 28095fce210SBarry Smith 28195fce210SBarry Smith Level: beginner 28295fce210SBarry Smith 28320662ed9SBarry Smith .seealso: `PetscSF`, `PetscSFType`, `PetscSFSetFromOptions()`, `PetscSFSetType()` 28495fce210SBarry Smith @*/ 285d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFSetUp(PetscSF sf) 286d71ae5a4SJacob Faibussowitsch { 28795fce210SBarry Smith PetscFunctionBegin; 28829046d53SLisandro Dalcin PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 28929046d53SLisandro Dalcin PetscSFCheckGraphSet(sf, 1); 2903ba16761SJacob Faibussowitsch if (sf->setupcalled) PetscFunctionReturn(PETSC_SUCCESS); 2919566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(PETSCSF_SetUp, sf, 0, 0, 0)); 2929566063dSJacob Faibussowitsch PetscCall(PetscSFCheckGraphValid_Private(sf)); 2939566063dSJacob Faibussowitsch if (!((PetscObject)sf)->type_name) PetscCall(PetscSFSetType(sf, PETSCSFBASIC)); /* Zero all sf->ops */ 294dbbe0bcdSBarry Smith PetscTryTypeMethod(sf, SetUp); 29520c24465SJunchao Zhang #if defined(PETSC_HAVE_CUDA) 29620c24465SJunchao Zhang if (sf->backend == PETSCSF_BACKEND_CUDA) { 29771438e86SJunchao Zhang sf->ops->Malloc = PetscSFMalloc_CUDA; 29871438e86SJunchao Zhang sf->ops->Free = PetscSFFree_CUDA; 29920c24465SJunchao Zhang } 30020c24465SJunchao Zhang #endif 30159af0bd3SScott Kruger #if defined(PETSC_HAVE_HIP) 30259af0bd3SScott Kruger if (sf->backend == PETSCSF_BACKEND_HIP) { 30359af0bd3SScott Kruger sf->ops->Malloc = PetscSFMalloc_HIP; 30459af0bd3SScott Kruger sf->ops->Free = PetscSFFree_HIP; 30559af0bd3SScott Kruger } 30659af0bd3SScott Kruger #endif 30720c24465SJunchao Zhang 30820c24465SJunchao Zhang #if defined(PETSC_HAVE_KOKKOS) 30920c24465SJunchao Zhang if (sf->backend == PETSCSF_BACKEND_KOKKOS) { 31020c24465SJunchao Zhang sf->ops->Malloc = PetscSFMalloc_Kokkos; 31120c24465SJunchao Zhang sf->ops->Free = PetscSFFree_Kokkos; 31220c24465SJunchao Zhang } 31320c24465SJunchao Zhang #endif 3149566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(PETSCSF_SetUp, sf, 0, 0, 0)); 31595fce210SBarry Smith sf->setupcalled = PETSC_TRUE; 3163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 31795fce210SBarry Smith } 31895fce210SBarry Smith 3198af6ec1cSBarry Smith /*@ 320cab54364SBarry Smith PetscSFSetFromOptions - set `PetscSF` options using the options database 32195fce210SBarry Smith 32295fce210SBarry Smith Logically Collective 32395fce210SBarry Smith 3244165533cSJose E. Roman Input Parameter: 32595fce210SBarry Smith . sf - star forest 32695fce210SBarry Smith 32795fce210SBarry Smith Options Database Keys: 32820662ed9SBarry Smith + -sf_type - implementation type, see `PetscSFSetType()` 32951ccb202SJunchao Zhang . -sf_rank_order - sort composite points for gathers and scatters in rank order, gathers are non-deterministic otherwise 33020662ed9SBarry Smith . -sf_use_default_stream - Assume callers of `PetscSF` computed the input root/leafdata with the default CUDA stream. `PetscSF` will also 33120662ed9SBarry Smith use the default stream to process data. Therefore, no stream synchronization is needed between `PetscSF` and its caller (default: true). 33220662ed9SBarry Smith If true, this option only works with `-use_gpu_aware_mpi 1`. 33320662ed9SBarry Smith . -sf_use_stream_aware_mpi - Assume the underlying MPI is CUDA-stream aware and `PetscSF` won't sync streams for send/recv buffers passed to MPI (default: false). 33420662ed9SBarry Smith If true, this option only works with `-use_gpu_aware_mpi 1`. 33595fce210SBarry Smith 3366497c311SBarry Smith - -sf_backend <cuda,hip,kokkos> - Select the device backend`PetscSF` uses. Currently `PetscSF` has these backends: cuda - hip and Kokkos. 33759af0bd3SScott Kruger On CUDA (HIP) devices, one can choose cuda (hip) or kokkos with the default being kokkos. On other devices, 33820c24465SJunchao Zhang the only available is kokkos. 33920c24465SJunchao Zhang 34095fce210SBarry Smith Level: intermediate 341cab54364SBarry Smith 342cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFCreate()`, `PetscSFSetType()` 34395fce210SBarry Smith @*/ 344d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFSetFromOptions(PetscSF sf) 345d71ae5a4SJacob Faibussowitsch { 34695fce210SBarry Smith PetscSFType deft; 34795fce210SBarry Smith char type[256]; 34895fce210SBarry Smith PetscBool flg; 34995fce210SBarry Smith 35095fce210SBarry Smith PetscFunctionBegin; 35195fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 352d0609cedSBarry Smith PetscObjectOptionsBegin((PetscObject)sf); 35395fce210SBarry Smith deft = ((PetscObject)sf)->type_name ? ((PetscObject)sf)->type_name : PETSCSFBASIC; 3549566063dSJacob Faibussowitsch PetscCall(PetscOptionsFList("-sf_type", "PetscSF implementation type", "PetscSFSetType", PetscSFList, deft, type, sizeof(type), &flg)); 3559566063dSJacob Faibussowitsch PetscCall(PetscSFSetType(sf, flg ? type : deft)); 3569566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-sf_rank_order", "sort composite points for gathers and scatters in rank order, gathers are non-deterministic otherwise", "PetscSFSetRankOrder", sf->rankorder, &sf->rankorder, NULL)); 357f9334340SJunchao Zhang PetscCall(PetscOptionsBool("-sf_monitor", "monitor the MPI communication in sf", NULL, sf->monitor, &sf->monitor, NULL)); 3587fd2d3dbSJunchao Zhang #if defined(PETSC_HAVE_DEVICE) 35920c24465SJunchao Zhang { 36020c24465SJunchao Zhang char backendstr[32] = {0}; 36159af0bd3SScott Kruger PetscBool isCuda = PETSC_FALSE, isHip = PETSC_FALSE, isKokkos = PETSC_FALSE, set; 36220c24465SJunchao Zhang /* Change the defaults set in PetscSFCreate() with command line options */ 363d5b43468SJose E. Roman PetscCall(PetscOptionsBool("-sf_unknown_input_stream", "SF root/leafdata is computed on arbitrary streams unknown to SF", "PetscSFSetFromOptions", sf->unknown_input_stream, &sf->unknown_input_stream, NULL)); 3649566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-sf_use_stream_aware_mpi", "Assume the underlying MPI is cuda-stream aware", "PetscSFSetFromOptions", sf->use_stream_aware_mpi, &sf->use_stream_aware_mpi, NULL)); 3659566063dSJacob Faibussowitsch PetscCall(PetscOptionsString("-sf_backend", "Select the device backend SF uses", "PetscSFSetFromOptions", NULL, backendstr, sizeof(backendstr), &set)); 3669566063dSJacob Faibussowitsch PetscCall(PetscStrcasecmp("cuda", backendstr, &isCuda)); 3679566063dSJacob Faibussowitsch PetscCall(PetscStrcasecmp("kokkos", backendstr, &isKokkos)); 3689566063dSJacob Faibussowitsch PetscCall(PetscStrcasecmp("hip", backendstr, &isHip)); 36959af0bd3SScott Kruger #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) 37020c24465SJunchao Zhang if (isCuda) sf->backend = PETSCSF_BACKEND_CUDA; 37120c24465SJunchao Zhang else if (isKokkos) sf->backend = PETSCSF_BACKEND_KOKKOS; 37259af0bd3SScott Kruger else if (isHip) sf->backend = PETSCSF_BACKEND_HIP; 37328b400f6SJacob Faibussowitsch else PetscCheck(!set, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "-sf_backend %s is not supported. You may choose cuda, hip or kokkos (if installed)", backendstr); 37420c24465SJunchao Zhang #elif defined(PETSC_HAVE_KOKKOS) 37508401ef6SPierre Jolivet PetscCheck(!set || isKokkos, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "-sf_backend %s is not supported. You can only choose kokkos", backendstr); 37620c24465SJunchao Zhang #endif 377715b587bSJunchao Zhang 378715b587bSJunchao Zhang #if defined(PETSC_HAVE_CUDA) && defined(PETSC_HAVE_MPIX_STREAM) 379715b587bSJunchao Zhang if (sf->use_stream_aware_mpi) { 380715b587bSJunchao Zhang MPI_Info info; 381715b587bSJunchao Zhang 382715b587bSJunchao Zhang PetscCallMPI(MPI_Info_create(&info)); 383715b587bSJunchao Zhang PetscCallMPI(MPI_Info_set(info, "type", "cudaStream_t")); 384715b587bSJunchao Zhang PetscCallMPI(MPIX_Info_set_hex(info, "value", &PetscDefaultCudaStream, sizeof(PetscDefaultCudaStream))); 385715b587bSJunchao Zhang PetscCallMPI(MPIX_Stream_create(info, &sf->mpi_stream)); 386715b587bSJunchao Zhang PetscCallMPI(MPI_Info_free(&info)); 387715b587bSJunchao Zhang PetscCallMPI(MPIX_Stream_comm_create(PetscObjectComm((PetscObject)sf), sf->mpi_stream, &sf->stream_comm)); 388715b587bSJunchao Zhang } 389715b587bSJunchao Zhang #endif 39020c24465SJunchao Zhang } 391c2a741eeSJunchao Zhang #endif 392dbbe0bcdSBarry Smith PetscTryTypeMethod(sf, SetFromOptions, PetscOptionsObject); 393d0609cedSBarry Smith PetscOptionsEnd(); 3943ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 39595fce210SBarry Smith } 39695fce210SBarry Smith 39729046d53SLisandro Dalcin /*@ 39895fce210SBarry Smith PetscSFSetRankOrder - sort multi-points for gathers and scatters by rank order 39995fce210SBarry Smith 40095fce210SBarry Smith Logically Collective 40195fce210SBarry Smith 4024165533cSJose E. Roman Input Parameters: 40395fce210SBarry Smith + sf - star forest 404cab54364SBarry Smith - flg - `PETSC_TRUE` to sort, `PETSC_FALSE` to skip sorting (lower setup cost, but non-deterministic) 40595fce210SBarry Smith 40695fce210SBarry Smith Level: advanced 40795fce210SBarry Smith 40820662ed9SBarry Smith .seealso: `PetscSF`, `PetscSFType`, `PetscSFGatherBegin()`, `PetscSFScatterBegin()` 40995fce210SBarry Smith @*/ 410d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFSetRankOrder(PetscSF sf, PetscBool flg) 411d71ae5a4SJacob Faibussowitsch { 41295fce210SBarry Smith PetscFunctionBegin; 41395fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 41495fce210SBarry Smith PetscValidLogicalCollectiveBool(sf, flg, 2); 41528b400f6SJacob Faibussowitsch PetscCheck(!sf->multi, PetscObjectComm((PetscObject)sf), PETSC_ERR_ARG_WRONGSTATE, "Rank ordering must be set before first call to PetscSFGatherBegin() or PetscSFScatterBegin()"); 41695fce210SBarry Smith sf->rankorder = flg; 4173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 41895fce210SBarry Smith } 41995fce210SBarry Smith 4205d83a8b1SBarry Smith /*@ 42195fce210SBarry Smith PetscSFSetGraph - Set a parallel star forest 42295fce210SBarry Smith 42395fce210SBarry Smith Collective 42495fce210SBarry Smith 4254165533cSJose E. Roman Input Parameters: 42695fce210SBarry Smith + sf - star forest 42795fce210SBarry Smith . nroots - number of root vertices on the current process (these are possible targets for other process to attach leaves) 42895fce210SBarry Smith . nleaves - number of leaf vertices on the current process, each of these references a root on any process 42920662ed9SBarry Smith . ilocal - locations of leaves in leafdata buffers, pass `NULL` for contiguous storage (locations must be >= 0, enforced 430c4e6a40aSLawrence Mitchell during setup in debug mode) 43120662ed9SBarry Smith . localmode - copy mode for `ilocal` 43226a11704SBarry Smith . iremote - remote locations of root vertices for each leaf on the current process, length is 2 `nleaves' 43326a11704SBarry Smith (locations must be >= 0, enforced during setup in debug mode) 43420662ed9SBarry Smith - remotemode - copy mode for `iremote` 43595fce210SBarry Smith 43695fce210SBarry Smith Level: intermediate 43795fce210SBarry Smith 43895452b02SPatrick Sanan Notes: 43920662ed9SBarry Smith Leaf indices in `ilocal` must be unique, otherwise an error occurs. 44038ab3f8aSBarry Smith 44120662ed9SBarry Smith Input arrays `ilocal` and `iremote` follow the `PetscCopyMode` semantics. 44220662ed9SBarry Smith In particular, if `localmode` or `remotemode` is `PETSC_OWN_POINTER` or `PETSC_USE_POINTER`, 443db2b9530SVaclav Hapla PETSc might modify the respective array; 44420662ed9SBarry Smith if `PETSC_USE_POINTER`, the user must delete the array after `PetscSFDestroy()`. 445cab54364SBarry Smith Only if `PETSC_COPY_VALUES` is used, the respective array is guaranteed to stay intact and a const array can be passed (but a cast to non-const is needed). 446db2b9530SVaclav Hapla 44738b5cf2dSJacob Faibussowitsch Fortran Notes: 44820662ed9SBarry Smith In Fortran you must use `PETSC_COPY_VALUES` for `localmode` and `remotemode`. 449c4e6a40aSLawrence Mitchell 45038b5cf2dSJacob Faibussowitsch Developer Notes: 451db2b9530SVaclav Hapla We sort leaves to check for duplicates and contiguousness and to find minleaf/maxleaf. 45220662ed9SBarry Smith This also allows to compare leaf sets of two `PetscSF`s easily. 45372bf8598SVaclav Hapla 45420662ed9SBarry Smith .seealso: `PetscSF`, `PetscSFType`, `PetscSFCreate()`, `PetscSFView()`, `PetscSFGetGraph()` 45595fce210SBarry Smith @*/ 4569c9354e5SBarry Smith PetscErrorCode PetscSFSetGraph(PetscSF sf, PetscInt nroots, PetscInt nleaves, PetscInt ilocal[], PetscCopyMode localmode, PetscSFNode iremote[], PetscCopyMode remotemode) 457d71ae5a4SJacob Faibussowitsch { 458db2b9530SVaclav Hapla PetscBool unique, contiguous; 45995fce210SBarry Smith 46095fce210SBarry Smith PetscFunctionBegin; 46195fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 4624f572ea9SToby Isaac if (nleaves > 0 && ilocal) PetscAssertPointer(ilocal, 4); 4634f572ea9SToby Isaac if (nleaves > 0) PetscAssertPointer(iremote, 6); 46408401ef6SPierre Jolivet PetscCheck(nroots >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "nroots %" PetscInt_FMT ", cannot be negative", nroots); 46508401ef6SPierre Jolivet PetscCheck(nleaves >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "nleaves %" PetscInt_FMT ", cannot be negative", nleaves); 4668da24d32SBarry Smith /* enums may be handled as unsigned by some compilers, NVHPC for example, the int cast 4678da24d32SBarry Smith * below is to prevent NVHPC from warning about meaningless comparison of unsigned with zero */ 4688da24d32SBarry Smith PetscCheck((int)localmode >= PETSC_COPY_VALUES && localmode <= PETSC_USE_POINTER, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Wrong localmode %d", localmode); 4698da24d32SBarry Smith PetscCheck((int)remotemode >= PETSC_COPY_VALUES && remotemode <= PETSC_USE_POINTER, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Wrong remotemode %d", remotemode); 47029046d53SLisandro Dalcin 4712a67d2daSStefano Zampini if (sf->nroots >= 0) { /* Reset only if graph already set */ 4729566063dSJacob Faibussowitsch PetscCall(PetscSFReset(sf)); 4732a67d2daSStefano Zampini } 4742a67d2daSStefano Zampini 4759566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(PETSCSF_SetGraph, sf, 0, 0, 0)); 4766497c311SBarry Smith if (PetscDefined(USE_DEBUG)) { 4776497c311SBarry Smith PetscMPIInt size; 4786497c311SBarry Smith 4796497c311SBarry Smith PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)sf), &size)); 480ac530a7eSPierre Jolivet for (PetscInt i = 0; i < nleaves; i++) PetscCheck(iremote[i].rank >= -1 && iremote[i].rank < size, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "iremote contains incorrect rank values"); 4816497c311SBarry Smith } 48229046d53SLisandro Dalcin 48395fce210SBarry Smith sf->nroots = nroots; 48495fce210SBarry Smith sf->nleaves = nleaves; 48529046d53SLisandro Dalcin 486db2b9530SVaclav Hapla if (localmode == PETSC_COPY_VALUES && ilocal) { 487db2b9530SVaclav Hapla PetscInt *tlocal = NULL; 488db2b9530SVaclav Hapla 4899566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nleaves, &tlocal)); 4909566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(tlocal, ilocal, nleaves)); 491db2b9530SVaclav Hapla ilocal = tlocal; 492db2b9530SVaclav Hapla } 493db2b9530SVaclav Hapla if (remotemode == PETSC_COPY_VALUES) { 494db2b9530SVaclav Hapla PetscSFNode *tremote = NULL; 495db2b9530SVaclav Hapla 4969566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nleaves, &tremote)); 4979566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(tremote, iremote, nleaves)); 498db2b9530SVaclav Hapla iremote = tremote; 499db2b9530SVaclav Hapla } 500db2b9530SVaclav Hapla 50129046d53SLisandro Dalcin if (nleaves && ilocal) { 502db2b9530SVaclav Hapla PetscSFNode work; 503db2b9530SVaclav Hapla 5049566063dSJacob Faibussowitsch PetscCall(PetscSortIntWithDataArray(nleaves, ilocal, iremote, sizeof(PetscSFNode), &work)); 5059566063dSJacob Faibussowitsch PetscCall(PetscSortedCheckDupsInt(nleaves, ilocal, &unique)); 506db2b9530SVaclav Hapla unique = PetscNot(unique); 507db2b9530SVaclav Hapla PetscCheck(sf->allow_multi_leaves || unique, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Input ilocal has duplicate entries which is not allowed for this PetscSF"); 508db2b9530SVaclav Hapla sf->minleaf = ilocal[0]; 509db2b9530SVaclav Hapla sf->maxleaf = ilocal[nleaves - 1]; 510db2b9530SVaclav Hapla contiguous = (PetscBool)(unique && ilocal[0] == 0 && ilocal[nleaves - 1] == nleaves - 1); 51129046d53SLisandro Dalcin } else { 51229046d53SLisandro Dalcin sf->minleaf = 0; 51329046d53SLisandro Dalcin sf->maxleaf = nleaves - 1; 514db2b9530SVaclav Hapla unique = PETSC_TRUE; 515db2b9530SVaclav Hapla contiguous = PETSC_TRUE; 51629046d53SLisandro Dalcin } 51729046d53SLisandro Dalcin 518db2b9530SVaclav Hapla if (contiguous) { 519db2b9530SVaclav Hapla if (localmode == PETSC_USE_POINTER) { 520db2b9530SVaclav Hapla ilocal = NULL; 521db2b9530SVaclav Hapla } else { 5229566063dSJacob Faibussowitsch PetscCall(PetscFree(ilocal)); 523db2b9530SVaclav Hapla } 524db2b9530SVaclav Hapla } 525db2b9530SVaclav Hapla sf->mine = ilocal; 526db2b9530SVaclav Hapla if (localmode == PETSC_USE_POINTER) { 52729046d53SLisandro Dalcin sf->mine_alloc = NULL; 528db2b9530SVaclav Hapla } else { 529db2b9530SVaclav Hapla sf->mine_alloc = ilocal; 53095fce210SBarry Smith } 5316497c311SBarry Smith if (PetscDefined(USE_DEBUG)) { 5326497c311SBarry Smith PetscMPIInt size; 5336497c311SBarry Smith 5346497c311SBarry Smith PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)sf), &size)); 535ac530a7eSPierre Jolivet for (PetscInt i = 0; i < nleaves; i++) PetscCheck(iremote[i].rank >= -1 && iremote[i].rank < size, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "iremote contains incorrect rank values"); 5366497c311SBarry Smith } 537db2b9530SVaclav Hapla sf->remote = iremote; 538db2b9530SVaclav Hapla if (remotemode == PETSC_USE_POINTER) { 53929046d53SLisandro Dalcin sf->remote_alloc = NULL; 540db2b9530SVaclav Hapla } else { 541db2b9530SVaclav Hapla sf->remote_alloc = iremote; 54295fce210SBarry Smith } 5439566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(PETSCSF_SetGraph, sf, 0, 0, 0)); 54429046d53SLisandro Dalcin sf->graphset = PETSC_TRUE; 5453ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 54695fce210SBarry Smith } 54795fce210SBarry Smith 54829046d53SLisandro Dalcin /*@ 549cab54364SBarry Smith PetscSFSetGraphWithPattern - Sets the graph of a `PetscSF` with a specific pattern 550dd5b3ca6SJunchao Zhang 551dd5b3ca6SJunchao Zhang Collective 552dd5b3ca6SJunchao Zhang 553dd5b3ca6SJunchao Zhang Input Parameters: 554cab54364SBarry Smith + sf - The `PetscSF` 555cab54364SBarry Smith . map - Layout of roots over all processes (insignificant when pattern is `PETSCSF_PATTERN_ALLTOALL`) 556cab54364SBarry Smith - pattern - One of `PETSCSF_PATTERN_ALLGATHER`, `PETSCSF_PATTERN_GATHER`, `PETSCSF_PATTERN_ALLTOALL` 557cab54364SBarry Smith 558cab54364SBarry Smith Level: intermediate 559dd5b3ca6SJunchao Zhang 560dd5b3ca6SJunchao Zhang Notes: 56120662ed9SBarry Smith It is easier to explain `PetscSFPattern` using vectors. Suppose we have an MPI vector `x` and its `PetscLayout` is `map`. 56220662ed9SBarry Smith `n` and `N` are the local and global sizes of `x` respectively. 563dd5b3ca6SJunchao Zhang 56420662ed9SBarry Smith With `PETSCSF_PATTERN_ALLGATHER`, the routine creates a graph that if one does `PetscSFBcastBegin()`/`PetscSFBcastEnd()` on it, it will copy `x` to 56520662ed9SBarry Smith sequential vectors `y` on all MPI processes. 566dd5b3ca6SJunchao Zhang 56720662ed9SBarry Smith With `PETSCSF_PATTERN_GATHER`, the routine creates a graph that if one does `PetscSFBcastBegin()`/`PetscSFBcastEnd()` on it, it will copy `x` to a 56820662ed9SBarry Smith sequential vector `y` on rank 0. 569dd5b3ca6SJunchao Zhang 57020662ed9SBarry Smith In above cases, entries of `x` are roots and entries of `y` are leaves. 571dd5b3ca6SJunchao Zhang 57220662ed9SBarry Smith With `PETSCSF_PATTERN_ALLTOALL`, map is insignificant. Suppose NP is size of `sf`'s communicator. The routine 573dd5b3ca6SJunchao Zhang creates a graph that every rank has NP leaves and NP roots. On rank i, its leaf j is connected to root i 574cab54364SBarry Smith of rank j. Here 0 <=i,j<NP. It is a kind of `MPI_Alltoall()` with sendcount/recvcount being 1. Note that it does 575dd5b3ca6SJunchao Zhang not mean one can not send multiple items. One just needs to create a new MPI datatype for the mulptiple data 576cab54364SBarry Smith items with `MPI_Type_contiguous` and use that as the <unit> argument in SF routines. 577dd5b3ca6SJunchao Zhang 578dd5b3ca6SJunchao Zhang In this case, roots and leaves are symmetric. 579dd5b3ca6SJunchao Zhang 580cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFCreate()`, `PetscSFView()`, `PetscSFGetGraph()` 581dd5b3ca6SJunchao Zhang @*/ 582d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFSetGraphWithPattern(PetscSF sf, PetscLayout map, PetscSFPattern pattern) 583d71ae5a4SJacob Faibussowitsch { 584dd5b3ca6SJunchao Zhang MPI_Comm comm; 585dd5b3ca6SJunchao Zhang PetscInt n, N, res[2]; 586dd5b3ca6SJunchao Zhang PetscMPIInt rank, size; 587dd5b3ca6SJunchao Zhang PetscSFType type; 588dd5b3ca6SJunchao Zhang 589dd5b3ca6SJunchao Zhang PetscFunctionBegin; 5902abc8c78SJacob Faibussowitsch PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 5914f572ea9SToby Isaac if (pattern != PETSCSF_PATTERN_ALLTOALL) PetscAssertPointer(map, 2); 5929566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)sf, &comm)); 5932c71b3e2SJacob Faibussowitsch PetscCheck(pattern >= PETSCSF_PATTERN_ALLGATHER && pattern <= PETSCSF_PATTERN_ALLTOALL, comm, PETSC_ERR_ARG_OUTOFRANGE, "Unsupported PetscSFPattern %d", pattern); 5949566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 5959566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 596dd5b3ca6SJunchao Zhang 597dd5b3ca6SJunchao Zhang if (pattern == PETSCSF_PATTERN_ALLTOALL) { 598835f2295SStefano Zampini PetscInt sizei = size; 599835f2295SStefano Zampini 600dd5b3ca6SJunchao Zhang type = PETSCSFALLTOALL; 6019566063dSJacob Faibussowitsch PetscCall(PetscLayoutCreate(comm, &sf->map)); 6029566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetLocalSize(sf->map, size)); 603835f2295SStefano Zampini PetscCall(PetscLayoutSetSize(sf->map, PetscSqr(sizei))); 6049566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(sf->map)); 605dd5b3ca6SJunchao Zhang } else { 6069566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetLocalSize(map, &n)); 6079566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetSize(map, &N)); 608dd5b3ca6SJunchao Zhang res[0] = n; 609dd5b3ca6SJunchao Zhang res[1] = -n; 610dd5b3ca6SJunchao Zhang /* Check if n are same over all ranks so that we can optimize it */ 611462c564dSBarry Smith PetscCallMPI(MPIU_Allreduce(MPI_IN_PLACE, res, 2, MPIU_INT, MPI_MAX, comm)); 612dd5b3ca6SJunchao Zhang if (res[0] == -res[1]) { /* same n */ 613dd5b3ca6SJunchao Zhang type = (pattern == PETSCSF_PATTERN_ALLGATHER) ? PETSCSFALLGATHER : PETSCSFGATHER; 614dd5b3ca6SJunchao Zhang } else { 615dd5b3ca6SJunchao Zhang type = (pattern == PETSCSF_PATTERN_ALLGATHER) ? PETSCSFALLGATHERV : PETSCSFGATHERV; 616dd5b3ca6SJunchao Zhang } 6179566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(map, &sf->map)); 618dd5b3ca6SJunchao Zhang } 6199566063dSJacob Faibussowitsch PetscCall(PetscSFSetType(sf, type)); 620dd5b3ca6SJunchao Zhang 621dd5b3ca6SJunchao Zhang sf->pattern = pattern; 622dd5b3ca6SJunchao Zhang sf->mine = NULL; /* Contiguous */ 623dd5b3ca6SJunchao Zhang 624dd5b3ca6SJunchao Zhang /* Set nleaves, nroots here in case user calls PetscSFGetGraph, which is legal to call even before PetscSFSetUp is called. 625dd5b3ca6SJunchao Zhang Also set other easy stuff. 626dd5b3ca6SJunchao Zhang */ 627dd5b3ca6SJunchao Zhang if (pattern == PETSCSF_PATTERN_ALLGATHER) { 628dd5b3ca6SJunchao Zhang sf->nleaves = N; 629dd5b3ca6SJunchao Zhang sf->nroots = n; 630dd5b3ca6SJunchao Zhang sf->nranks = size; 631dd5b3ca6SJunchao Zhang sf->minleaf = 0; 632dd5b3ca6SJunchao Zhang sf->maxleaf = N - 1; 633dd5b3ca6SJunchao Zhang } else if (pattern == PETSCSF_PATTERN_GATHER) { 634dd5b3ca6SJunchao Zhang sf->nleaves = rank ? 0 : N; 635dd5b3ca6SJunchao Zhang sf->nroots = n; 636dd5b3ca6SJunchao Zhang sf->nranks = rank ? 0 : size; 637dd5b3ca6SJunchao Zhang sf->minleaf = 0; 638dd5b3ca6SJunchao Zhang sf->maxleaf = rank ? -1 : N - 1; 639dd5b3ca6SJunchao Zhang } else if (pattern == PETSCSF_PATTERN_ALLTOALL) { 640dd5b3ca6SJunchao Zhang sf->nleaves = size; 641dd5b3ca6SJunchao Zhang sf->nroots = size; 642dd5b3ca6SJunchao Zhang sf->nranks = size; 643dd5b3ca6SJunchao Zhang sf->minleaf = 0; 644dd5b3ca6SJunchao Zhang sf->maxleaf = size - 1; 645dd5b3ca6SJunchao Zhang } 646dd5b3ca6SJunchao Zhang sf->ndranks = 0; /* We do not need to separate out distinguished ranks for patterned graphs to improve communication performance */ 647dd5b3ca6SJunchao Zhang sf->graphset = PETSC_TRUE; 6483ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 649dd5b3ca6SJunchao Zhang } 650dd5b3ca6SJunchao Zhang 651dd5b3ca6SJunchao Zhang /*@ 652cab54364SBarry Smith PetscSFCreateInverseSF - given a `PetscSF` in which all vertices have degree 1, creates the inverse map 65395fce210SBarry Smith 65495fce210SBarry Smith Collective 65595fce210SBarry Smith 6564165533cSJose E. Roman Input Parameter: 65795fce210SBarry Smith . sf - star forest to invert 65895fce210SBarry Smith 6594165533cSJose E. Roman Output Parameter: 66020662ed9SBarry Smith . isf - inverse of `sf` 6614165533cSJose E. Roman 66295fce210SBarry Smith Level: advanced 66395fce210SBarry Smith 66495fce210SBarry Smith Notes: 66595fce210SBarry Smith All roots must have degree 1. 66695fce210SBarry Smith 66795fce210SBarry Smith The local space may be a permutation, but cannot be sparse. 66895fce210SBarry Smith 66920662ed9SBarry Smith .seealso: `PetscSF`, `PetscSFType`, `PetscSFSetGraph()` 67095fce210SBarry Smith @*/ 671d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFCreateInverseSF(PetscSF sf, PetscSF *isf) 672d71ae5a4SJacob Faibussowitsch { 67395fce210SBarry Smith PetscMPIInt rank; 67495fce210SBarry Smith PetscInt i, nroots, nleaves, maxlocal, count, *newilocal; 67595fce210SBarry Smith const PetscInt *ilocal; 67695fce210SBarry Smith PetscSFNode *roots, *leaves; 67795fce210SBarry Smith 67895fce210SBarry Smith PetscFunctionBegin; 67929046d53SLisandro Dalcin PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 68029046d53SLisandro Dalcin PetscSFCheckGraphSet(sf, 1); 6814f572ea9SToby Isaac PetscAssertPointer(isf, 2); 68229046d53SLisandro Dalcin 6839566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sf, &nroots, &nleaves, &ilocal, NULL)); 68429046d53SLisandro Dalcin maxlocal = sf->maxleaf + 1; /* TODO: We should use PetscSFGetLeafRange() */ 68529046d53SLisandro Dalcin 6869566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)sf), &rank)); 6879566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(nroots, &roots, maxlocal, &leaves)); 688ae9aee6dSMatthew G. Knepley for (i = 0; i < maxlocal; i++) { 68995fce210SBarry Smith leaves[i].rank = rank; 69095fce210SBarry Smith leaves[i].index = i; 69195fce210SBarry Smith } 69295fce210SBarry Smith for (i = 0; i < nroots; i++) { 69395fce210SBarry Smith roots[i].rank = -1; 69495fce210SBarry Smith roots[i].index = -1; 69595fce210SBarry Smith } 6966497c311SBarry Smith PetscCall(PetscSFReduceBegin(sf, MPIU_SF_NODE, leaves, roots, MPI_REPLACE)); 6976497c311SBarry Smith PetscCall(PetscSFReduceEnd(sf, MPIU_SF_NODE, leaves, roots, MPI_REPLACE)); 69895fce210SBarry Smith 69995fce210SBarry Smith /* Check whether our leaves are sparse */ 7009371c9d4SSatish Balay for (i = 0, count = 0; i < nroots; i++) 7019371c9d4SSatish Balay if (roots[i].rank >= 0) count++; 70295fce210SBarry Smith if (count == nroots) newilocal = NULL; 7039371c9d4SSatish Balay else { /* Index for sparse leaves and compact "roots" array (which is to become our leaves). */ PetscCall(PetscMalloc1(count, &newilocal)); 70495fce210SBarry Smith for (i = 0, count = 0; i < nroots; i++) { 70595fce210SBarry Smith if (roots[i].rank >= 0) { 70695fce210SBarry Smith newilocal[count] = i; 70795fce210SBarry Smith roots[count].rank = roots[i].rank; 70895fce210SBarry Smith roots[count].index = roots[i].index; 70995fce210SBarry Smith count++; 71095fce210SBarry Smith } 71195fce210SBarry Smith } 71295fce210SBarry Smith } 71395fce210SBarry Smith 7149566063dSJacob Faibussowitsch PetscCall(PetscSFDuplicate(sf, PETSCSF_DUPLICATE_CONFONLY, isf)); 7159566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(*isf, maxlocal, count, newilocal, PETSC_OWN_POINTER, roots, PETSC_COPY_VALUES)); 7169566063dSJacob Faibussowitsch PetscCall(PetscFree2(roots, leaves)); 7173ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 71895fce210SBarry Smith } 71995fce210SBarry Smith 72095fce210SBarry Smith /*@ 721cab54364SBarry Smith PetscSFDuplicate - duplicate a `PetscSF`, optionally preserving rank connectivity and graph 72295fce210SBarry Smith 72395fce210SBarry Smith Collective 72495fce210SBarry Smith 7254165533cSJose E. Roman Input Parameters: 72695fce210SBarry Smith + sf - communication object to duplicate 727cab54364SBarry Smith - opt - `PETSCSF_DUPLICATE_CONFONLY`, `PETSCSF_DUPLICATE_RANKS`, or `PETSCSF_DUPLICATE_GRAPH` (see `PetscSFDuplicateOption`) 72895fce210SBarry Smith 7294165533cSJose E. Roman Output Parameter: 73095fce210SBarry Smith . newsf - new communication object 73195fce210SBarry Smith 73295fce210SBarry Smith Level: beginner 73395fce210SBarry Smith 73420662ed9SBarry Smith .seealso: `PetscSF`, `PetscSFType`, `PetscSFCreate()`, `PetscSFSetType()`, `PetscSFSetGraph()` 73595fce210SBarry Smith @*/ 736d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFDuplicate(PetscSF sf, PetscSFDuplicateOption opt, PetscSF *newsf) 737d71ae5a4SJacob Faibussowitsch { 73829046d53SLisandro Dalcin PetscSFType type; 73997929ea7SJunchao Zhang MPI_Datatype dtype = MPIU_SCALAR; 74095fce210SBarry Smith 74195fce210SBarry Smith PetscFunctionBegin; 74229046d53SLisandro Dalcin PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 74329046d53SLisandro Dalcin PetscValidLogicalCollectiveEnum(sf, opt, 2); 7444f572ea9SToby Isaac PetscAssertPointer(newsf, 3); 7459566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)sf), newsf)); 7469566063dSJacob Faibussowitsch PetscCall(PetscSFGetType(sf, &type)); 7479566063dSJacob Faibussowitsch if (type) PetscCall(PetscSFSetType(*newsf, type)); 74835cb6cd3SPierre Jolivet (*newsf)->allow_multi_leaves = sf->allow_multi_leaves; /* Dup this flag earlier since PetscSFSetGraph() below checks on this flag */ 74995fce210SBarry Smith if (opt == PETSCSF_DUPLICATE_GRAPH) { 750dd5b3ca6SJunchao Zhang PetscSFCheckGraphSet(sf, 1); 751dd5b3ca6SJunchao Zhang if (sf->pattern == PETSCSF_PATTERN_GENERAL) { 75295fce210SBarry Smith PetscInt nroots, nleaves; 75395fce210SBarry Smith const PetscInt *ilocal; 75495fce210SBarry Smith const PetscSFNode *iremote; 7559566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sf, &nroots, &nleaves, &ilocal, &iremote)); 7569566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(*newsf, nroots, nleaves, (PetscInt *)ilocal, PETSC_COPY_VALUES, (PetscSFNode *)iremote, PETSC_COPY_VALUES)); 757dd5b3ca6SJunchao Zhang } else { 7589566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphWithPattern(*newsf, sf->map, sf->pattern)); 759dd5b3ca6SJunchao Zhang } 76095fce210SBarry Smith } 76197929ea7SJunchao Zhang /* Since oldtype is committed, so is newtype, according to MPI */ 7629566063dSJacob Faibussowitsch if (sf->vscat.bs > 1) PetscCallMPI(MPI_Type_dup(sf->vscat.unit, &dtype)); 76397929ea7SJunchao Zhang (*newsf)->vscat.bs = sf->vscat.bs; 76497929ea7SJunchao Zhang (*newsf)->vscat.unit = dtype; 76597929ea7SJunchao Zhang (*newsf)->vscat.to_n = sf->vscat.to_n; 76697929ea7SJunchao Zhang (*newsf)->vscat.from_n = sf->vscat.from_n; 76797929ea7SJunchao Zhang /* Do not copy lsf. Build it on demand since it is rarely used */ 76897929ea7SJunchao Zhang 76920c24465SJunchao Zhang #if defined(PETSC_HAVE_DEVICE) 77020c24465SJunchao Zhang (*newsf)->backend = sf->backend; 77171438e86SJunchao Zhang (*newsf)->unknown_input_stream = sf->unknown_input_stream; 77220c24465SJunchao Zhang (*newsf)->use_gpu_aware_mpi = sf->use_gpu_aware_mpi; 77320c24465SJunchao Zhang (*newsf)->use_stream_aware_mpi = sf->use_stream_aware_mpi; 77420c24465SJunchao Zhang #endif 775dbbe0bcdSBarry Smith PetscTryTypeMethod(sf, Duplicate, opt, *newsf); 77620c24465SJunchao Zhang /* Don't do PetscSFSetUp() since the new sf's graph might have not been set. */ 7773ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 77895fce210SBarry Smith } 77995fce210SBarry Smith 78095fce210SBarry Smith /*@C 78195fce210SBarry Smith PetscSFGetGraph - Get the graph specifying a parallel star forest 78295fce210SBarry Smith 78395fce210SBarry Smith Not Collective 78495fce210SBarry Smith 7854165533cSJose E. Roman Input Parameter: 78695fce210SBarry Smith . sf - star forest 78795fce210SBarry Smith 7884165533cSJose E. Roman Output Parameters: 78995fce210SBarry Smith + nroots - number of root vertices on the current process (these are possible targets for other process to attach leaves) 79095fce210SBarry Smith . nleaves - number of leaf vertices on the current process, each of these references a root on any process 79120662ed9SBarry Smith . ilocal - locations of leaves in leafdata buffers (if returned value is `NULL`, it means leaves are in contiguous storage) 79295fce210SBarry Smith - iremote - remote locations of root vertices for each leaf on the current process 79395fce210SBarry Smith 794cab54364SBarry Smith Level: intermediate 795cab54364SBarry Smith 796373e0d91SLisandro Dalcin Notes: 79720662ed9SBarry Smith We are not currently requiring that the graph is set, thus returning `nroots` = -1 if it has not been set yet 798373e0d91SLisandro Dalcin 79920662ed9SBarry Smith The returned `ilocal` and `iremote` might contain values in different order than the input ones in `PetscSFSetGraph()` 800db2b9530SVaclav Hapla 801ce78bad3SBarry Smith Fortran Note: 802ce78bad3SBarry Smith Use `PetscSFRestoreGraph()` when access to the arrays is no longer needed 803ca797d7aSLawrence Mitchell 80420662ed9SBarry Smith .seealso: `PetscSF`, `PetscSFType`, `PetscSFCreate()`, `PetscSFView()`, `PetscSFSetGraph()` 80595fce210SBarry Smith @*/ 806ce78bad3SBarry Smith PetscErrorCode PetscSFGetGraph(PetscSF sf, PetscInt *nroots, PetscInt *nleaves, const PetscInt *ilocal[], const PetscSFNode *iremote[]) 807d71ae5a4SJacob Faibussowitsch { 80895fce210SBarry Smith PetscFunctionBegin; 80995fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 810b8dee149SJunchao Zhang if (sf->ops->GetGraph) { 811f4f49eeaSPierre Jolivet PetscCall(sf->ops->GetGraph(sf, nroots, nleaves, ilocal, iremote)); 812b8dee149SJunchao Zhang } else { 81395fce210SBarry Smith if (nroots) *nroots = sf->nroots; 81495fce210SBarry Smith if (nleaves) *nleaves = sf->nleaves; 81595fce210SBarry Smith if (ilocal) *ilocal = sf->mine; 81695fce210SBarry Smith if (iremote) *iremote = sf->remote; 817b8dee149SJunchao Zhang } 8183ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 81995fce210SBarry Smith } 82095fce210SBarry Smith 82129046d53SLisandro Dalcin /*@ 82295fce210SBarry Smith PetscSFGetLeafRange - Get the active leaf ranges 82395fce210SBarry Smith 82495fce210SBarry Smith Not Collective 82595fce210SBarry Smith 8264165533cSJose E. Roman Input Parameter: 82795fce210SBarry Smith . sf - star forest 82895fce210SBarry Smith 8294165533cSJose E. Roman Output Parameters: 83020662ed9SBarry Smith + minleaf - minimum active leaf on this process. Returns 0 if there are no leaves. 83120662ed9SBarry Smith - maxleaf - maximum active leaf on this process. Returns -1 if there are no leaves. 83295fce210SBarry Smith 83395fce210SBarry Smith Level: developer 83495fce210SBarry Smith 83520662ed9SBarry Smith .seealso: `PetscSF`, `PetscSFType`, `PetscSFCreate()`, `PetscSFView()`, `PetscSFSetGraph()`, `PetscSFGetGraph()` 83695fce210SBarry Smith @*/ 837d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFGetLeafRange(PetscSF sf, PetscInt *minleaf, PetscInt *maxleaf) 838d71ae5a4SJacob Faibussowitsch { 83995fce210SBarry Smith PetscFunctionBegin; 84095fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 84129046d53SLisandro Dalcin PetscSFCheckGraphSet(sf, 1); 84295fce210SBarry Smith if (minleaf) *minleaf = sf->minleaf; 84395fce210SBarry Smith if (maxleaf) *maxleaf = sf->maxleaf; 8443ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 84595fce210SBarry Smith } 84695fce210SBarry Smith 847ffeef943SBarry Smith /*@ 848cab54364SBarry Smith PetscSFViewFromOptions - View a `PetscSF` based on arguments in the options database 849fe2efc57SMark 85020f4b53cSBarry Smith Collective 851fe2efc57SMark 852fe2efc57SMark Input Parameters: 853fe2efc57SMark + A - the star forest 854cab54364SBarry Smith . obj - Optional object that provides the prefix for the option names 855736c3998SJose E. Roman - name - command line option 856fe2efc57SMark 857fe2efc57SMark Level: intermediate 858cab54364SBarry Smith 85920662ed9SBarry Smith Note: 86020662ed9SBarry Smith See `PetscObjectViewFromOptions()` for possible `PetscViewer` and `PetscViewerFormat` 86120662ed9SBarry Smith 862db781477SPatrick Sanan .seealso: `PetscSF`, `PetscSFView`, `PetscObjectViewFromOptions()`, `PetscSFCreate()` 863fe2efc57SMark @*/ 864d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFViewFromOptions(PetscSF A, PetscObject obj, const char name[]) 865d71ae5a4SJacob Faibussowitsch { 866fe2efc57SMark PetscFunctionBegin; 867fe2efc57SMark PetscValidHeaderSpecific(A, PETSCSF_CLASSID, 1); 8689566063dSJacob Faibussowitsch PetscCall(PetscObjectViewFromOptions((PetscObject)A, obj, name)); 8693ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 870fe2efc57SMark } 871fe2efc57SMark 872ffeef943SBarry Smith /*@ 87395fce210SBarry Smith PetscSFView - view a star forest 87495fce210SBarry Smith 87595fce210SBarry Smith Collective 87695fce210SBarry Smith 8774165533cSJose E. Roman Input Parameters: 87895fce210SBarry Smith + sf - star forest 879cab54364SBarry Smith - viewer - viewer to display graph, for example `PETSC_VIEWER_STDOUT_WORLD` 88095fce210SBarry Smith 88195fce210SBarry Smith Level: beginner 88295fce210SBarry Smith 883cab54364SBarry Smith .seealso: `PetscSF`, `PetscViewer`, `PetscSFCreate()`, `PetscSFSetGraph()` 88495fce210SBarry Smith @*/ 885d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFView(PetscSF sf, PetscViewer viewer) 886d71ae5a4SJacob Faibussowitsch { 8879f196a02SMartin Diehl PetscBool isascii; 88895fce210SBarry Smith PetscViewerFormat format; 88995fce210SBarry Smith 89095fce210SBarry Smith PetscFunctionBegin; 89195fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 8929566063dSJacob Faibussowitsch if (!viewer) PetscCall(PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject)sf), &viewer)); 89395fce210SBarry Smith PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 89495fce210SBarry Smith PetscCheckSameComm(sf, 1, viewer, 2); 8959566063dSJacob Faibussowitsch if (sf->graphset) PetscCall(PetscSFSetUp(sf)); 8969f196a02SMartin Diehl PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &isascii)); 8979f196a02SMartin Diehl if (isascii && viewer->format != PETSC_VIEWER_ASCII_MATLAB) { 89895fce210SBarry Smith PetscMPIInt rank; 8996497c311SBarry Smith PetscInt j; 90095fce210SBarry Smith 9019566063dSJacob Faibussowitsch PetscCall(PetscObjectPrintClassNamePrefixType((PetscObject)sf, viewer)); 9029566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushTab(viewer)); 903dd5b3ca6SJunchao Zhang if (sf->pattern == PETSCSF_PATTERN_GENERAL) { 90480153354SVaclav Hapla if (!sf->graphset) { 9059566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "PetscSFSetGraph() has not been called yet\n")); 9069566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopTab(viewer)); 9073ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 90880153354SVaclav Hapla } 9099566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)sf), &rank)); 9109566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 9116497c311SBarry Smith PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Number of roots=%" PetscInt_FMT ", leaves=%" PetscInt_FMT ", remote ranks=%d\n", rank, sf->nroots, sf->nleaves, sf->nranks)); 912835f2295SStefano Zampini for (PetscInt i = 0; i < sf->nleaves; i++) PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] %" PetscInt_FMT " <- (%" PetscInt_FMT ",%" PetscInt_FMT ")\n", rank, sf->mine ? sf->mine[i] : i, sf->remote[i].rank, sf->remote[i].index)); 9139566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 9149566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 91595fce210SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 91681bfa7aaSJed Brown PetscMPIInt *tmpranks, *perm; 9176497c311SBarry Smith 9189566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(sf->nranks, &tmpranks, sf->nranks, &perm)); 9199566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(tmpranks, sf->ranks, sf->nranks)); 9206497c311SBarry Smith for (PetscMPIInt i = 0; i < sf->nranks; i++) perm[i] = i; 9219566063dSJacob Faibussowitsch PetscCall(PetscSortMPIIntWithArray(sf->nranks, tmpranks, perm)); 9229566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Roots referenced by my leaves, by rank\n", rank)); 9236497c311SBarry Smith for (PetscMPIInt ii = 0; ii < sf->nranks; ii++) { 9246497c311SBarry Smith PetscMPIInt i = perm[ii]; 9256497c311SBarry Smith 9269566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] %d: %" PetscInt_FMT " edges\n", rank, sf->ranks[i], sf->roffset[i + 1] - sf->roffset[i])); 92748a46eb9SPierre Jolivet for (j = sf->roffset[i]; j < sf->roffset[i + 1]; j++) PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] %" PetscInt_FMT " <- %" PetscInt_FMT "\n", rank, sf->rmine[j], sf->rremote[j])); 92895fce210SBarry Smith } 9299566063dSJacob Faibussowitsch PetscCall(PetscFree2(tmpranks, perm)); 93095fce210SBarry Smith } 9319566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 9329566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 933dd5b3ca6SJunchao Zhang } 9349566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopTab(viewer)); 93595fce210SBarry Smith } 936dbbe0bcdSBarry Smith PetscTryTypeMethod(sf, View, viewer); 9373ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 93895fce210SBarry Smith } 93995fce210SBarry Smith 94095fce210SBarry Smith /*@C 941dec1416fSJunchao Zhang PetscSFGetRootRanks - Get root ranks and number of vertices referenced by leaves on this process 94295fce210SBarry Smith 94395fce210SBarry Smith Not Collective 94495fce210SBarry Smith 9454165533cSJose E. Roman Input Parameter: 94695fce210SBarry Smith . sf - star forest 94795fce210SBarry Smith 9484165533cSJose E. Roman Output Parameters: 94995fce210SBarry Smith + nranks - number of ranks referenced by local part 95020662ed9SBarry Smith . ranks - [`nranks`] array of ranks 95120662ed9SBarry Smith . roffset - [`nranks`+1] offset in `rmine`/`rremote` for each rank 9526497c311SBarry Smith . rmine - [`roffset`[`nranks`]] concatenated array holding local indices referencing each remote rank, or `NULL` 9536497c311SBarry Smith - rremote - [`roffset`[`nranks`]] concatenated array holding remote indices referenced for each remote rank, or `NULL` 95495fce210SBarry Smith 95595fce210SBarry Smith Level: developer 95695fce210SBarry Smith 957cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFGetLeafRanks()` 95895fce210SBarry Smith @*/ 9599c9354e5SBarry Smith PetscErrorCode PetscSFGetRootRanks(PetscSF sf, PetscMPIInt *nranks, const PetscMPIInt *ranks[], const PetscInt *roffset[], const PetscInt *rmine[], const PetscInt *rremote[]) 960d71ae5a4SJacob Faibussowitsch { 96195fce210SBarry Smith PetscFunctionBegin; 96295fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 96328b400f6SJacob Faibussowitsch PetscCheck(sf->setupcalled, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Must call PetscSFSetUp() before obtaining ranks"); 964dec1416fSJunchao Zhang if (sf->ops->GetRootRanks) { 9659927e4dfSBarry Smith PetscUseTypeMethod(sf, GetRootRanks, nranks, ranks, roffset, rmine, rremote); 966dec1416fSJunchao Zhang } else { 967dec1416fSJunchao Zhang /* The generic implementation */ 96895fce210SBarry Smith if (nranks) *nranks = sf->nranks; 96995fce210SBarry Smith if (ranks) *ranks = sf->ranks; 97095fce210SBarry Smith if (roffset) *roffset = sf->roffset; 97195fce210SBarry Smith if (rmine) *rmine = sf->rmine; 97295fce210SBarry Smith if (rremote) *rremote = sf->rremote; 973dec1416fSJunchao Zhang } 9743ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 97595fce210SBarry Smith } 97695fce210SBarry Smith 9778750ddebSJunchao Zhang /*@C 9788750ddebSJunchao Zhang PetscSFGetLeafRanks - Get leaf ranks referencing roots on this process 9798750ddebSJunchao Zhang 9808750ddebSJunchao Zhang Not Collective 9818750ddebSJunchao Zhang 9824165533cSJose E. Roman Input Parameter: 9838750ddebSJunchao Zhang . sf - star forest 9848750ddebSJunchao Zhang 9854165533cSJose E. Roman Output Parameters: 9868750ddebSJunchao Zhang + niranks - number of leaf ranks referencing roots on this process 98720662ed9SBarry Smith . iranks - [`niranks`] array of ranks 98820662ed9SBarry Smith . ioffset - [`niranks`+1] offset in `irootloc` for each rank 98920662ed9SBarry Smith - irootloc - [`ioffset`[`niranks`]] concatenated array holding local indices of roots referenced by each leaf rank 9908750ddebSJunchao Zhang 9918750ddebSJunchao Zhang Level: developer 9928750ddebSJunchao Zhang 993cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFGetRootRanks()` 9948750ddebSJunchao Zhang @*/ 9959c9354e5SBarry Smith PetscErrorCode PetscSFGetLeafRanks(PetscSF sf, PetscMPIInt *niranks, const PetscMPIInt *iranks[], const PetscInt *ioffset[], const PetscInt *irootloc[]) 996d71ae5a4SJacob Faibussowitsch { 9978750ddebSJunchao Zhang PetscFunctionBegin; 9988750ddebSJunchao Zhang PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 99928b400f6SJacob Faibussowitsch PetscCheck(sf->setupcalled, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Must call PetscSFSetUp() before obtaining ranks"); 10008750ddebSJunchao Zhang if (sf->ops->GetLeafRanks) { 10019927e4dfSBarry Smith PetscUseTypeMethod(sf, GetLeafRanks, niranks, iranks, ioffset, irootloc); 10028750ddebSJunchao Zhang } else { 10038750ddebSJunchao Zhang PetscSFType type; 10049566063dSJacob Faibussowitsch PetscCall(PetscSFGetType(sf, &type)); 100598921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "PetscSFGetLeafRanks() is not supported on this StarForest type: %s", type); 10068750ddebSJunchao Zhang } 10073ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 10088750ddebSJunchao Zhang } 10098750ddebSJunchao Zhang 1010d71ae5a4SJacob Faibussowitsch static PetscBool InList(PetscMPIInt needle, PetscMPIInt n, const PetscMPIInt *list) 1011d71ae5a4SJacob Faibussowitsch { 1012b5a8e515SJed Brown PetscInt i; 1013b5a8e515SJed Brown for (i = 0; i < n; i++) { 1014b5a8e515SJed Brown if (needle == list[i]) return PETSC_TRUE; 1015b5a8e515SJed Brown } 1016b5a8e515SJed Brown return PETSC_FALSE; 1017b5a8e515SJed Brown } 1018b5a8e515SJed Brown 101995fce210SBarry Smith /*@C 1020cab54364SBarry Smith PetscSFSetUpRanks - Set up data structures associated with ranks; this is for internal use by `PetscSF` implementations. 102121c688dcSJed Brown 102221c688dcSJed Brown Collective 102321c688dcSJed Brown 10244165533cSJose E. Roman Input Parameters: 1025cab54364SBarry Smith + sf - `PetscSF` to set up; `PetscSFSetGraph()` must have been called 1026cab54364SBarry Smith - dgroup - `MPI_Group` of ranks to be distinguished (e.g., for self or shared memory exchange) 102721c688dcSJed Brown 102821c688dcSJed Brown Level: developer 102921c688dcSJed Brown 1030cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFGetRootRanks()` 103121c688dcSJed Brown @*/ 1032d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFSetUpRanks(PetscSF sf, MPI_Group dgroup) 1033d71ae5a4SJacob Faibussowitsch { 1034eec179cfSJacob Faibussowitsch PetscHMapI table; 1035eec179cfSJacob Faibussowitsch PetscHashIter pos; 10366497c311SBarry Smith PetscMPIInt size, groupsize, *groupranks, *ranks; 10376497c311SBarry Smith PetscInt *rcount; 10386497c311SBarry Smith PetscInt irank, sfnrank, ranksi; 10396497c311SBarry Smith PetscMPIInt i, orank = -1; 104021c688dcSJed Brown 104121c688dcSJed Brown PetscFunctionBegin; 104221c688dcSJed Brown PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 104329046d53SLisandro Dalcin PetscSFCheckGraphSet(sf, 1); 10449566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)sf), &size)); 1045eec179cfSJacob Faibussowitsch PetscCall(PetscHMapICreateWithSize(10, &table)); 104621c688dcSJed Brown for (i = 0; i < sf->nleaves; i++) { 104721c688dcSJed Brown /* Log 1-based rank */ 1048eec179cfSJacob Faibussowitsch PetscCall(PetscHMapISetWithMode(table, sf->remote[i].rank + 1, 1, ADD_VALUES)); 104921c688dcSJed Brown } 10506497c311SBarry Smith PetscCall(PetscHMapIGetSize(table, &sfnrank)); 10516497c311SBarry Smith PetscCall(PetscMPIIntCast(sfnrank, &sf->nranks)); 10529566063dSJacob Faibussowitsch PetscCall(PetscMalloc4(sf->nranks, &sf->ranks, sf->nranks + 1, &sf->roffset, sf->nleaves, &sf->rmine, sf->nleaves, &sf->rremote)); 10539566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(sf->nranks, &rcount, sf->nranks, &ranks)); 1054eec179cfSJacob Faibussowitsch PetscHashIterBegin(table, pos); 105521c688dcSJed Brown for (i = 0; i < sf->nranks; i++) { 10566497c311SBarry Smith PetscHashIterGetKey(table, pos, ranksi); 10576497c311SBarry Smith PetscCall(PetscMPIIntCast(ranksi, &ranks[i])); 1058eec179cfSJacob Faibussowitsch PetscHashIterGetVal(table, pos, rcount[i]); 1059eec179cfSJacob Faibussowitsch PetscHashIterNext(table, pos); 106021c688dcSJed Brown ranks[i]--; /* Convert back to 0-based */ 106121c688dcSJed Brown } 1062eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&table)); 1063b5a8e515SJed Brown 1064b5a8e515SJed Brown /* We expect that dgroup is reliably "small" while nranks could be large */ 1065b5a8e515SJed Brown { 10667fb8a5e4SKarl Rupp MPI_Group group = MPI_GROUP_NULL; 1067b5a8e515SJed Brown PetscMPIInt *dgroupranks; 10686497c311SBarry Smith 10699566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_group(PetscObjectComm((PetscObject)sf), &group)); 10709566063dSJacob Faibussowitsch PetscCallMPI(MPI_Group_size(dgroup, &groupsize)); 10719566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(groupsize, &dgroupranks)); 10729566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(groupsize, &groupranks)); 1073b5a8e515SJed Brown for (i = 0; i < groupsize; i++) dgroupranks[i] = i; 10749566063dSJacob Faibussowitsch if (groupsize) PetscCallMPI(MPI_Group_translate_ranks(dgroup, groupsize, dgroupranks, group, groupranks)); 10759566063dSJacob Faibussowitsch PetscCallMPI(MPI_Group_free(&group)); 10769566063dSJacob Faibussowitsch PetscCall(PetscFree(dgroupranks)); 1077b5a8e515SJed Brown } 1078b5a8e515SJed Brown 1079b5a8e515SJed Brown /* Partition ranks[] into distinguished (first sf->ndranks) followed by non-distinguished */ 1080b5a8e515SJed Brown for (sf->ndranks = 0, i = sf->nranks; sf->ndranks < i;) { 1081b5a8e515SJed Brown for (i--; sf->ndranks < i; i--) { /* Scan i backward looking for distinguished rank */ 1082b5a8e515SJed Brown if (InList(ranks[i], groupsize, groupranks)) break; 1083b5a8e515SJed Brown } 1084b5a8e515SJed Brown for (; sf->ndranks <= i; sf->ndranks++) { /* Scan sf->ndranks forward looking for non-distinguished rank */ 1085b5a8e515SJed Brown if (!InList(ranks[sf->ndranks], groupsize, groupranks)) break; 1086b5a8e515SJed Brown } 1087b5a8e515SJed Brown if (sf->ndranks < i) { /* Swap ranks[sf->ndranks] with ranks[i] */ 10886497c311SBarry Smith PetscMPIInt tmprank; 10896497c311SBarry Smith PetscInt tmpcount; 1090247e8311SStefano Zampini 1091b5a8e515SJed Brown tmprank = ranks[i]; 1092b5a8e515SJed Brown tmpcount = rcount[i]; 1093b5a8e515SJed Brown ranks[i] = ranks[sf->ndranks]; 1094b5a8e515SJed Brown rcount[i] = rcount[sf->ndranks]; 1095b5a8e515SJed Brown ranks[sf->ndranks] = tmprank; 1096b5a8e515SJed Brown rcount[sf->ndranks] = tmpcount; 1097b5a8e515SJed Brown sf->ndranks++; 1098b5a8e515SJed Brown } 1099b5a8e515SJed Brown } 11009566063dSJacob Faibussowitsch PetscCall(PetscFree(groupranks)); 11016497c311SBarry Smith PetscCall(PetscSortMPIIntWithIntArray(sf->ndranks, ranks, rcount)); 11026497c311SBarry Smith if (rcount) PetscCall(PetscSortMPIIntWithIntArray(sf->nranks - sf->ndranks, ranks + sf->ndranks, rcount + sf->ndranks)); 110321c688dcSJed Brown sf->roffset[0] = 0; 110421c688dcSJed Brown for (i = 0; i < sf->nranks; i++) { 11059566063dSJacob Faibussowitsch PetscCall(PetscMPIIntCast(ranks[i], sf->ranks + i)); 110621c688dcSJed Brown sf->roffset[i + 1] = sf->roffset[i] + rcount[i]; 110721c688dcSJed Brown rcount[i] = 0; 110821c688dcSJed Brown } 1109247e8311SStefano Zampini for (i = 0, irank = -1, orank = -1; i < sf->nleaves; i++) { 1110247e8311SStefano Zampini /* short circuit */ 1111247e8311SStefano Zampini if (orank != sf->remote[i].rank) { 111221c688dcSJed Brown /* Search for index of iremote[i].rank in sf->ranks */ 1113835f2295SStefano Zampini PetscCall(PetscMPIIntCast(sf->remote[i].rank, &orank)); 1114835f2295SStefano Zampini PetscCall(PetscFindMPIInt(orank, sf->ndranks, sf->ranks, &irank)); 1115b5a8e515SJed Brown if (irank < 0) { 1116835f2295SStefano Zampini PetscCall(PetscFindMPIInt(orank, sf->nranks - sf->ndranks, sf->ranks + sf->ndranks, &irank)); 1117b5a8e515SJed Brown if (irank >= 0) irank += sf->ndranks; 111821c688dcSJed Brown } 1119247e8311SStefano Zampini } 1120835f2295SStefano Zampini PetscCheck(irank >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Could not find rank %d in array", orank); 112121c688dcSJed Brown sf->rmine[sf->roffset[irank] + rcount[irank]] = sf->mine ? sf->mine[i] : i; 112221c688dcSJed Brown sf->rremote[sf->roffset[irank] + rcount[irank]] = sf->remote[i].index; 112321c688dcSJed Brown rcount[irank]++; 112421c688dcSJed Brown } 11259566063dSJacob Faibussowitsch PetscCall(PetscFree2(rcount, ranks)); 11263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 112721c688dcSJed Brown } 112821c688dcSJed Brown 112921c688dcSJed Brown /*@C 113095fce210SBarry Smith PetscSFGetGroups - gets incoming and outgoing process groups 113195fce210SBarry Smith 113295fce210SBarry Smith Collective 113395fce210SBarry Smith 11344165533cSJose E. Roman Input Parameter: 113595fce210SBarry Smith . sf - star forest 113695fce210SBarry Smith 11374165533cSJose E. Roman Output Parameters: 113895fce210SBarry Smith + incoming - group of origin processes for incoming edges (leaves that reference my roots) 113995fce210SBarry Smith - outgoing - group of destination processes for outgoing edges (roots that I reference) 114095fce210SBarry Smith 114195fce210SBarry Smith Level: developer 114295fce210SBarry Smith 1143cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFGetWindow()`, `PetscSFRestoreWindow()` 114495fce210SBarry Smith @*/ 1145d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFGetGroups(PetscSF sf, MPI_Group *incoming, MPI_Group *outgoing) 1146d71ae5a4SJacob Faibussowitsch { 11477fb8a5e4SKarl Rupp MPI_Group group = MPI_GROUP_NULL; 114895fce210SBarry Smith 114995fce210SBarry Smith PetscFunctionBegin; 115008401ef6SPierre Jolivet PetscCheck(sf->nranks >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Must call PetscSFSetUpRanks() before obtaining groups"); 115195fce210SBarry Smith if (sf->ingroup == MPI_GROUP_NULL) { 115295fce210SBarry Smith PetscInt i; 115395fce210SBarry Smith const PetscInt *indegree; 11546497c311SBarry Smith PetscMPIInt rank, *outranks, *inranks, indegree0; 115595fce210SBarry Smith PetscSFNode *remote; 115695fce210SBarry Smith PetscSF bgcount; 115795fce210SBarry Smith 115895fce210SBarry Smith /* Compute the number of incoming ranks */ 11599566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(sf->nranks, &remote)); 116095fce210SBarry Smith for (i = 0; i < sf->nranks; i++) { 116195fce210SBarry Smith remote[i].rank = sf->ranks[i]; 116295fce210SBarry Smith remote[i].index = 0; 116395fce210SBarry Smith } 11649566063dSJacob Faibussowitsch PetscCall(PetscSFDuplicate(sf, PETSCSF_DUPLICATE_CONFONLY, &bgcount)); 11659566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(bgcount, 1, sf->nranks, NULL, PETSC_COPY_VALUES, remote, PETSC_OWN_POINTER)); 11669566063dSJacob Faibussowitsch PetscCall(PetscSFComputeDegreeBegin(bgcount, &indegree)); 11679566063dSJacob Faibussowitsch PetscCall(PetscSFComputeDegreeEnd(bgcount, &indegree)); 116895fce210SBarry Smith /* Enumerate the incoming ranks */ 11699566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(indegree[0], &inranks, sf->nranks, &outranks)); 11709566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)sf), &rank)); 117195fce210SBarry Smith for (i = 0; i < sf->nranks; i++) outranks[i] = rank; 11729566063dSJacob Faibussowitsch PetscCall(PetscSFGatherBegin(bgcount, MPI_INT, outranks, inranks)); 11739566063dSJacob Faibussowitsch PetscCall(PetscSFGatherEnd(bgcount, MPI_INT, outranks, inranks)); 11749566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_group(PetscObjectComm((PetscObject)sf), &group)); 11756497c311SBarry Smith PetscCall(PetscMPIIntCast(indegree[0], &indegree0)); 11766497c311SBarry Smith PetscCallMPI(MPI_Group_incl(group, indegree0, inranks, &sf->ingroup)); 11779566063dSJacob Faibussowitsch PetscCallMPI(MPI_Group_free(&group)); 11789566063dSJacob Faibussowitsch PetscCall(PetscFree2(inranks, outranks)); 11799566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&bgcount)); 118095fce210SBarry Smith } 118195fce210SBarry Smith *incoming = sf->ingroup; 118295fce210SBarry Smith 118395fce210SBarry Smith if (sf->outgroup == MPI_GROUP_NULL) { 11849566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_group(PetscObjectComm((PetscObject)sf), &group)); 11859566063dSJacob Faibussowitsch PetscCallMPI(MPI_Group_incl(group, sf->nranks, sf->ranks, &sf->outgroup)); 11869566063dSJacob Faibussowitsch PetscCallMPI(MPI_Group_free(&group)); 118795fce210SBarry Smith } 118895fce210SBarry Smith *outgoing = sf->outgroup; 11893ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 119095fce210SBarry Smith } 119195fce210SBarry Smith 119229046d53SLisandro Dalcin /*@ 11930dd791a8SStefano Zampini PetscSFGetRanksSF - gets the `PetscSF` to perform communications with root ranks 11940dd791a8SStefano Zampini 11950dd791a8SStefano Zampini Collective 11960dd791a8SStefano Zampini 11970dd791a8SStefano Zampini Input Parameter: 11980dd791a8SStefano Zampini . sf - star forest 11990dd791a8SStefano Zampini 12000dd791a8SStefano Zampini Output Parameter: 12010dd791a8SStefano Zampini . rsf - the star forest with a single root per process to perform communications 12020dd791a8SStefano Zampini 12030dd791a8SStefano Zampini Level: developer 12040dd791a8SStefano Zampini 12050dd791a8SStefano Zampini .seealso: `PetscSF`, `PetscSFSetGraph()`, `PetscSFGetRootRanks()` 12060dd791a8SStefano Zampini @*/ 12070dd791a8SStefano Zampini PetscErrorCode PetscSFGetRanksSF(PetscSF sf, PetscSF *rsf) 12080dd791a8SStefano Zampini { 12090dd791a8SStefano Zampini PetscFunctionBegin; 12100dd791a8SStefano Zampini PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 12110dd791a8SStefano Zampini PetscAssertPointer(rsf, 2); 12120dd791a8SStefano Zampini if (!sf->rankssf) { 12130dd791a8SStefano Zampini PetscSFNode *rremotes; 12140dd791a8SStefano Zampini const PetscMPIInt *ranks; 12156497c311SBarry Smith PetscMPIInt nranks; 12160dd791a8SStefano Zampini 12170dd791a8SStefano Zampini PetscCall(PetscSFGetRootRanks(sf, &nranks, &ranks, NULL, NULL, NULL)); 12180dd791a8SStefano Zampini PetscCall(PetscMalloc1(nranks, &rremotes)); 12190dd791a8SStefano Zampini for (PetscInt i = 0; i < nranks; i++) { 12200dd791a8SStefano Zampini rremotes[i].rank = ranks[i]; 12210dd791a8SStefano Zampini rremotes[i].index = 0; 12220dd791a8SStefano Zampini } 12230dd791a8SStefano Zampini PetscCall(PetscSFDuplicate(sf, PETSCSF_DUPLICATE_CONFONLY, &sf->rankssf)); 12240dd791a8SStefano Zampini PetscCall(PetscSFSetGraph(sf->rankssf, 1, nranks, NULL, PETSC_OWN_POINTER, rremotes, PETSC_OWN_POINTER)); 12250dd791a8SStefano Zampini } 12260dd791a8SStefano Zampini *rsf = sf->rankssf; 12270dd791a8SStefano Zampini PetscFunctionReturn(PETSC_SUCCESS); 12280dd791a8SStefano Zampini } 12290dd791a8SStefano Zampini 12300dd791a8SStefano Zampini /*@ 1231cab54364SBarry Smith PetscSFGetMultiSF - gets the inner `PetscSF` implementing gathers and scatters 123295fce210SBarry Smith 123395fce210SBarry Smith Collective 123495fce210SBarry Smith 12354165533cSJose E. Roman Input Parameter: 123695fce210SBarry Smith . sf - star forest that may contain roots with 0 or with more than 1 vertex 123795fce210SBarry Smith 12384165533cSJose E. Roman Output Parameter: 123995fce210SBarry Smith . multi - star forest with split roots, such that each root has degree exactly 1 124095fce210SBarry Smith 124195fce210SBarry Smith Level: developer 124295fce210SBarry Smith 1243cab54364SBarry Smith Note: 1244cab54364SBarry Smith In most cases, users should use `PetscSFGatherBegin()` and `PetscSFScatterBegin()` instead of manipulating multi 124595fce210SBarry Smith directly. Since multi satisfies the stronger condition that each entry in the global space has exactly one incoming 124695fce210SBarry Smith edge, it is a candidate for future optimization that might involve its removal. 124795fce210SBarry Smith 1248cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFSetGraph()`, `PetscSFGatherBegin()`, `PetscSFScatterBegin()`, `PetscSFComputeMultiRootOriginalNumbering()` 124995fce210SBarry Smith @*/ 1250d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFGetMultiSF(PetscSF sf, PetscSF *multi) 1251d71ae5a4SJacob Faibussowitsch { 125295fce210SBarry Smith PetscFunctionBegin; 125395fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 12544f572ea9SToby Isaac PetscAssertPointer(multi, 2); 125595fce210SBarry Smith if (sf->nroots < 0) { /* Graph has not been set yet; why do we need this? */ 12569566063dSJacob Faibussowitsch PetscCall(PetscSFDuplicate(sf, PETSCSF_DUPLICATE_RANKS, &sf->multi)); 125795fce210SBarry Smith *multi = sf->multi; 1258013b3241SStefano Zampini sf->multi->multi = sf->multi; 12593ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 126095fce210SBarry Smith } 126195fce210SBarry Smith if (!sf->multi) { 126295fce210SBarry Smith const PetscInt *indegree; 12639837ea96SMatthew G. Knepley PetscInt i, *inoffset, *outones, *outoffset, maxlocal; 126495fce210SBarry Smith PetscSFNode *remote; 126529046d53SLisandro Dalcin maxlocal = sf->maxleaf + 1; /* TODO: We should use PetscSFGetLeafRange() */ 12669566063dSJacob Faibussowitsch PetscCall(PetscSFComputeDegreeBegin(sf, &indegree)); 12679566063dSJacob Faibussowitsch PetscCall(PetscSFComputeDegreeEnd(sf, &indegree)); 12689566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(sf->nroots + 1, &inoffset, maxlocal, &outones, maxlocal, &outoffset)); 126995fce210SBarry Smith inoffset[0] = 0; 127095fce210SBarry Smith for (i = 0; i < sf->nroots; i++) inoffset[i + 1] = inoffset[i] + indegree[i]; 12719837ea96SMatthew G. Knepley for (i = 0; i < maxlocal; i++) outones[i] = 1; 12729566063dSJacob Faibussowitsch PetscCall(PetscSFFetchAndOpBegin(sf, MPIU_INT, inoffset, outones, outoffset, MPI_SUM)); 12739566063dSJacob Faibussowitsch PetscCall(PetscSFFetchAndOpEnd(sf, MPIU_INT, inoffset, outones, outoffset, MPI_SUM)); 127495fce210SBarry Smith for (i = 0; i < sf->nroots; i++) inoffset[i] -= indegree[i]; /* Undo the increment */ 127576bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { /* Check that the expected number of increments occurred */ 1276ad540459SPierre Jolivet for (i = 0; i < sf->nroots; i++) PetscCheck(inoffset[i] + indegree[i] == inoffset[i + 1], PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect result after PetscSFFetchAndOp"); 127776bd3646SJed Brown } 12789566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(sf->nleaves, &remote)); 127995fce210SBarry Smith for (i = 0; i < sf->nleaves; i++) { 128095fce210SBarry Smith remote[i].rank = sf->remote[i].rank; 128138e7336fSToby Isaac remote[i].index = outoffset[sf->mine ? sf->mine[i] : i]; 128295fce210SBarry Smith } 12839566063dSJacob Faibussowitsch PetscCall(PetscSFDuplicate(sf, PETSCSF_DUPLICATE_RANKS, &sf->multi)); 1284013b3241SStefano Zampini sf->multi->multi = sf->multi; 12859566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf->multi, inoffset[sf->nroots], sf->nleaves, sf->mine, PETSC_COPY_VALUES, remote, PETSC_OWN_POINTER)); 128695fce210SBarry Smith if (sf->rankorder) { /* Sort the ranks */ 128795fce210SBarry Smith PetscMPIInt rank; 128895fce210SBarry Smith PetscInt *inranks, *newoffset, *outranks, *newoutoffset, *tmpoffset, maxdegree; 128995fce210SBarry Smith PetscSFNode *newremote; 12909566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)sf), &rank)); 129195fce210SBarry Smith for (i = 0, maxdegree = 0; i < sf->nroots; i++) maxdegree = PetscMax(maxdegree, indegree[i]); 12929566063dSJacob Faibussowitsch PetscCall(PetscMalloc5(sf->multi->nroots, &inranks, sf->multi->nroots, &newoffset, maxlocal, &outranks, maxlocal, &newoutoffset, maxdegree, &tmpoffset)); 12939837ea96SMatthew G. Knepley for (i = 0; i < maxlocal; i++) outranks[i] = rank; 12949566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sf->multi, MPIU_INT, outranks, inranks, MPI_REPLACE)); 12959566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf->multi, MPIU_INT, outranks, inranks, MPI_REPLACE)); 129695fce210SBarry Smith /* Sort the incoming ranks at each vertex, build the inverse map */ 129795fce210SBarry Smith for (i = 0; i < sf->nroots; i++) { 129895fce210SBarry Smith PetscInt j; 129995fce210SBarry Smith for (j = 0; j < indegree[i]; j++) tmpoffset[j] = j; 13008e3a54c0SPierre Jolivet PetscCall(PetscSortIntWithArray(indegree[i], PetscSafePointerPlusOffset(inranks, inoffset[i]), tmpoffset)); 130195fce210SBarry Smith for (j = 0; j < indegree[i]; j++) newoffset[inoffset[i] + tmpoffset[j]] = inoffset[i] + j; 130295fce210SBarry Smith } 13039566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf->multi, MPIU_INT, newoffset, newoutoffset, MPI_REPLACE)); 13049566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf->multi, MPIU_INT, newoffset, newoutoffset, MPI_REPLACE)); 13059566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(sf->nleaves, &newremote)); 130695fce210SBarry Smith for (i = 0; i < sf->nleaves; i++) { 130795fce210SBarry Smith newremote[i].rank = sf->remote[i].rank; 130801365b40SToby Isaac newremote[i].index = newoutoffset[sf->mine ? sf->mine[i] : i]; 130995fce210SBarry Smith } 13109566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf->multi, inoffset[sf->nroots], sf->nleaves, sf->mine, PETSC_COPY_VALUES, newremote, PETSC_OWN_POINTER)); 13119566063dSJacob Faibussowitsch PetscCall(PetscFree5(inranks, newoffset, outranks, newoutoffset, tmpoffset)); 131295fce210SBarry Smith } 13139566063dSJacob Faibussowitsch PetscCall(PetscFree3(inoffset, outones, outoffset)); 131495fce210SBarry Smith } 131595fce210SBarry Smith *multi = sf->multi; 13163ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 131795fce210SBarry Smith } 131895fce210SBarry Smith 131995fce210SBarry Smith /*@C 132020662ed9SBarry Smith PetscSFCreateEmbeddedRootSF - removes edges from all but the selected roots of a `PetscSF`, does not remap indices 132195fce210SBarry Smith 132295fce210SBarry Smith Collective 132395fce210SBarry Smith 13244165533cSJose E. Roman Input Parameters: 132595fce210SBarry Smith + sf - original star forest 1326ba2a7774SJunchao Zhang . nselected - number of selected roots on this process 1327ba2a7774SJunchao Zhang - selected - indices of the selected roots on this process 132895fce210SBarry Smith 13294165533cSJose E. Roman Output Parameter: 1330cd620004SJunchao Zhang . esf - new star forest 133195fce210SBarry Smith 133295fce210SBarry Smith Level: advanced 133395fce210SBarry Smith 133495fce210SBarry Smith Note: 1335cab54364SBarry Smith To use the new `PetscSF`, it may be necessary to know the indices of the leaves that are still participating. This can 133695fce210SBarry Smith be done by calling PetscSFGetGraph(). 133795fce210SBarry Smith 1338cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFSetGraph()`, `PetscSFGetGraph()` 133995fce210SBarry Smith @*/ 1340*cf84bf9eSBarry Smith PetscErrorCode PetscSFCreateEmbeddedRootSF(PetscSF sf, PetscInt nselected, const PetscInt selected[], PetscSF *esf) 1341d71ae5a4SJacob Faibussowitsch { 1342cd620004SJunchao Zhang PetscInt i, j, n, nroots, nleaves, esf_nleaves, *new_ilocal, minleaf, maxleaf, maxlocal; 1343cd620004SJunchao Zhang const PetscInt *ilocal; 1344cd620004SJunchao Zhang signed char *rootdata, *leafdata, *leafmem; 1345ba2a7774SJunchao Zhang const PetscSFNode *iremote; 1346f659e5c7SJunchao Zhang PetscSFNode *new_iremote; 1347f659e5c7SJunchao Zhang MPI_Comm comm; 134895fce210SBarry Smith 134995fce210SBarry Smith PetscFunctionBegin; 135095fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 135129046d53SLisandro Dalcin PetscSFCheckGraphSet(sf, 1); 13524f572ea9SToby Isaac if (nselected) PetscAssertPointer(selected, 3); 13534f572ea9SToby Isaac PetscAssertPointer(esf, 4); 13540511a646SMatthew G. Knepley 13559566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 13569566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(PETSCSF_EmbedSF, sf, 0, 0, 0)); 13579566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)sf, &comm)); 13589566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sf, &nroots, &nleaves, &ilocal, &iremote)); 1359cd620004SJunchao Zhang 136076bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { /* Error out if selected[] has dups or out of range indices */ 1361cd620004SJunchao Zhang PetscBool dups; 13629566063dSJacob Faibussowitsch PetscCall(PetscCheckDupsInt(nselected, selected, &dups)); 136328b400f6SJacob Faibussowitsch PetscCheck(!dups, comm, PETSC_ERR_ARG_WRONG, "selected[] has dups"); 1364511e6246SStefano Zampini for (i = 0; i < nselected; i++) PetscCheck(selected[i] >= 0 && selected[i] < nroots, comm, PETSC_ERR_ARG_OUTOFRANGE, "selected root index %" PetscInt_FMT " is out of [0,%" PetscInt_FMT ")", selected[i], nroots); 1365cd620004SJunchao Zhang } 1366f659e5c7SJunchao Zhang 1367dbbe0bcdSBarry Smith if (sf->ops->CreateEmbeddedRootSF) PetscUseTypeMethod(sf, CreateEmbeddedRootSF, nselected, selected, esf); 1368dbbe0bcdSBarry Smith else { 1369cd620004SJunchao Zhang /* A generic version of creating embedded sf */ 13709566063dSJacob Faibussowitsch PetscCall(PetscSFGetLeafRange(sf, &minleaf, &maxleaf)); 1371cd620004SJunchao Zhang maxlocal = maxleaf - minleaf + 1; 13729566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(nroots, &rootdata, maxlocal, &leafmem)); 13738e3a54c0SPierre Jolivet leafdata = PetscSafePointerPlusOffset(leafmem, -minleaf); 1374cd620004SJunchao Zhang /* Tag selected roots and bcast to leaves */ 1375cd620004SJunchao Zhang for (i = 0; i < nselected; i++) rootdata[selected[i]] = 1; 13769566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPI_SIGNED_CHAR, rootdata, leafdata, MPI_REPLACE)); 13779566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPI_SIGNED_CHAR, rootdata, leafdata, MPI_REPLACE)); 1378ba2a7774SJunchao Zhang 1379cd620004SJunchao Zhang /* Build esf with leaves that are still connected */ 1380cd620004SJunchao Zhang esf_nleaves = 0; 1381cd620004SJunchao Zhang for (i = 0; i < nleaves; i++) { 1382cd620004SJunchao Zhang j = ilocal ? ilocal[i] : i; 1383cd620004SJunchao Zhang /* esf_nleaves += leafdata[j] should work in theory, but failed with SFWindow bugs 1384cd620004SJunchao Zhang with PetscSFBcast. See https://gitlab.com/petsc/petsc/issues/555 1385cd620004SJunchao Zhang */ 1386cd620004SJunchao Zhang esf_nleaves += (leafdata[j] ? 1 : 0); 1387cd620004SJunchao Zhang } 13889566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(esf_nleaves, &new_ilocal)); 13899566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(esf_nleaves, &new_iremote)); 1390cd620004SJunchao Zhang for (i = n = 0; i < nleaves; i++) { 1391cd620004SJunchao Zhang j = ilocal ? ilocal[i] : i; 1392cd620004SJunchao Zhang if (leafdata[j]) { 1393cd620004SJunchao Zhang new_ilocal[n] = j; 1394cd620004SJunchao Zhang new_iremote[n].rank = iremote[i].rank; 1395cd620004SJunchao Zhang new_iremote[n].index = iremote[i].index; 1396fc1ede2bSMatthew G. Knepley ++n; 139795fce210SBarry Smith } 139895fce210SBarry Smith } 13999566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, esf)); 14009566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(*esf)); 14019566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(*esf, nroots, esf_nleaves, new_ilocal, PETSC_OWN_POINTER, new_iremote, PETSC_OWN_POINTER)); 14029566063dSJacob Faibussowitsch PetscCall(PetscFree2(rootdata, leafmem)); 1403f659e5c7SJunchao Zhang } 14049566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(PETSCSF_EmbedSF, sf, 0, 0, 0)); 14053ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 140695fce210SBarry Smith } 140795fce210SBarry Smith 14082f5fb4c2SMatthew G. Knepley /*@C 140920662ed9SBarry Smith PetscSFCreateEmbeddedLeafSF - removes edges from all but the selected leaves of a `PetscSF`, does not remap indices 14102f5fb4c2SMatthew G. Knepley 14112f5fb4c2SMatthew G. Knepley Collective 14122f5fb4c2SMatthew G. Knepley 14134165533cSJose E. Roman Input Parameters: 14142f5fb4c2SMatthew G. Knepley + sf - original star forest 1415f659e5c7SJunchao Zhang . nselected - number of selected leaves on this process 1416f659e5c7SJunchao Zhang - selected - indices of the selected leaves on this process 14172f5fb4c2SMatthew G. Knepley 14184165533cSJose E. Roman Output Parameter: 14192f5fb4c2SMatthew G. Knepley . newsf - new star forest 14202f5fb4c2SMatthew G. Knepley 14212f5fb4c2SMatthew G. Knepley Level: advanced 14222f5fb4c2SMatthew G. Knepley 1423cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFCreateEmbeddedRootSF()`, `PetscSFSetGraph()`, `PetscSFGetGraph()` 14242f5fb4c2SMatthew G. Knepley @*/ 1425*cf84bf9eSBarry Smith PetscErrorCode PetscSFCreateEmbeddedLeafSF(PetscSF sf, PetscInt nselected, const PetscInt selected[], PetscSF *newsf) 1426d71ae5a4SJacob Faibussowitsch { 1427f659e5c7SJunchao Zhang const PetscSFNode *iremote; 1428f659e5c7SJunchao Zhang PetscSFNode *new_iremote; 1429f659e5c7SJunchao Zhang const PetscInt *ilocal; 1430f659e5c7SJunchao Zhang PetscInt i, nroots, *leaves, *new_ilocal; 1431f659e5c7SJunchao Zhang MPI_Comm comm; 14322f5fb4c2SMatthew G. Knepley 14332f5fb4c2SMatthew G. Knepley PetscFunctionBegin; 14342f5fb4c2SMatthew G. Knepley PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 143529046d53SLisandro Dalcin PetscSFCheckGraphSet(sf, 1); 14364f572ea9SToby Isaac if (nselected) PetscAssertPointer(selected, 3); 14374f572ea9SToby Isaac PetscAssertPointer(newsf, 4); 14382f5fb4c2SMatthew G. Knepley 1439f659e5c7SJunchao Zhang /* Uniq selected[] and put results in leaves[] */ 14409566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)sf, &comm)); 14419566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nselected, &leaves)); 14429566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(leaves, selected, nselected)); 14439566063dSJacob Faibussowitsch PetscCall(PetscSortedRemoveDupsInt(&nselected, leaves)); 144408401ef6SPierre Jolivet PetscCheck(!nselected || !(leaves[0] < 0 || leaves[nselected - 1] >= sf->nleaves), comm, PETSC_ERR_ARG_OUTOFRANGE, "Min/Max leaf indices %" PetscInt_FMT "/%" PetscInt_FMT " are not in [0,%" PetscInt_FMT ")", leaves[0], leaves[nselected - 1], sf->nleaves); 1445f659e5c7SJunchao Zhang 1446f659e5c7SJunchao Zhang /* Optimize the routine only when sf is setup and hence we can reuse sf's communication pattern */ 1447dbbe0bcdSBarry Smith if (sf->setupcalled && sf->ops->CreateEmbeddedLeafSF) PetscUseTypeMethod(sf, CreateEmbeddedLeafSF, nselected, leaves, newsf); 1448dbbe0bcdSBarry Smith else { 14499566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sf, &nroots, NULL, &ilocal, &iremote)); 14509566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nselected, &new_ilocal)); 14519566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nselected, &new_iremote)); 1452f659e5c7SJunchao Zhang for (i = 0; i < nselected; ++i) { 1453f659e5c7SJunchao Zhang const PetscInt l = leaves[i]; 1454f659e5c7SJunchao Zhang new_ilocal[i] = ilocal ? ilocal[l] : l; 1455f659e5c7SJunchao Zhang new_iremote[i].rank = iremote[l].rank; 1456f659e5c7SJunchao Zhang new_iremote[i].index = iremote[l].index; 14572f5fb4c2SMatthew G. Knepley } 14589566063dSJacob Faibussowitsch PetscCall(PetscSFDuplicate(sf, PETSCSF_DUPLICATE_CONFONLY, newsf)); 14599566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(*newsf, nroots, nselected, new_ilocal, PETSC_OWN_POINTER, new_iremote, PETSC_OWN_POINTER)); 1460f659e5c7SJunchao Zhang } 14619566063dSJacob Faibussowitsch PetscCall(PetscFree(leaves)); 14623ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 14632f5fb4c2SMatthew G. Knepley } 14642f5fb4c2SMatthew G. Knepley 146595fce210SBarry Smith /*@C 1466cab54364SBarry Smith PetscSFBcastBegin - begin pointwise broadcast with root value being reduced to leaf value, to be concluded with call to `PetscSFBcastEnd()` 14673482bfa8SJunchao Zhang 1468c3339decSBarry Smith Collective 14693482bfa8SJunchao Zhang 14704165533cSJose E. Roman Input Parameters: 14713482bfa8SJunchao Zhang + sf - star forest on which to communicate 14723482bfa8SJunchao Zhang . unit - data type associated with each node 14733482bfa8SJunchao Zhang . rootdata - buffer to broadcast 14743482bfa8SJunchao Zhang - op - operation to use for reduction 14753482bfa8SJunchao Zhang 14764165533cSJose E. Roman Output Parameter: 14773482bfa8SJunchao Zhang . leafdata - buffer to be reduced with values from each leaf's respective root 14783482bfa8SJunchao Zhang 14793482bfa8SJunchao Zhang Level: intermediate 14803482bfa8SJunchao Zhang 148120662ed9SBarry Smith Note: 148220662ed9SBarry Smith When PETSc is configured with device support, it will use its own mechanism to figure out whether the given data pointers 1483da81f932SPierre Jolivet are host pointers or device pointers, which may incur a noticeable cost. If you already knew the info, you should 1484cab54364SBarry Smith use `PetscSFBcastWithMemTypeBegin()` instead. 1485cab54364SBarry Smith 1486cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFBcastEnd()`, `PetscSFBcastWithMemTypeBegin()` 14873482bfa8SJunchao Zhang @*/ 1488d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFBcastBegin(PetscSF sf, MPI_Datatype unit, const void *rootdata, void *leafdata, MPI_Op op) 1489d71ae5a4SJacob Faibussowitsch { 1490eb02082bSJunchao Zhang PetscMemType rootmtype, leafmtype; 14913482bfa8SJunchao Zhang 14923482bfa8SJunchao Zhang PetscFunctionBegin; 14933482bfa8SJunchao Zhang PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 14949566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 14959566063dSJacob Faibussowitsch if (!sf->vscat.logging) PetscCall(PetscLogEventBegin(PETSCSF_BcastBegin, sf, 0, 0, 0)); 14969566063dSJacob Faibussowitsch PetscCall(PetscGetMemType(rootdata, &rootmtype)); 14979566063dSJacob Faibussowitsch PetscCall(PetscGetMemType(leafdata, &leafmtype)); 1498dbbe0bcdSBarry Smith PetscUseTypeMethod(sf, BcastBegin, unit, rootmtype, rootdata, leafmtype, leafdata, op); 14999566063dSJacob Faibussowitsch if (!sf->vscat.logging) PetscCall(PetscLogEventEnd(PETSCSF_BcastBegin, sf, 0, 0, 0)); 15003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 15013482bfa8SJunchao Zhang } 15023482bfa8SJunchao Zhang 15033482bfa8SJunchao Zhang /*@C 150420662ed9SBarry Smith PetscSFBcastWithMemTypeBegin - begin pointwise broadcast with root value being reduced to leaf value with explicit memory types, to be concluded with call 150520662ed9SBarry Smith to `PetscSFBcastEnd()` 1506d0295fc0SJunchao Zhang 1507c3339decSBarry Smith Collective 1508d0295fc0SJunchao Zhang 15094165533cSJose E. Roman Input Parameters: 1510d0295fc0SJunchao Zhang + sf - star forest on which to communicate 1511d0295fc0SJunchao Zhang . unit - data type associated with each node 1512d0295fc0SJunchao Zhang . rootmtype - memory type of rootdata 1513d0295fc0SJunchao Zhang . rootdata - buffer to broadcast 1514d0295fc0SJunchao Zhang . leafmtype - memory type of leafdata 1515d0295fc0SJunchao Zhang - op - operation to use for reduction 1516d0295fc0SJunchao Zhang 15174165533cSJose E. Roman Output Parameter: 1518d0295fc0SJunchao Zhang . leafdata - buffer to be reduced with values from each leaf's respective root 1519d0295fc0SJunchao Zhang 1520d0295fc0SJunchao Zhang Level: intermediate 1521d0295fc0SJunchao Zhang 1522cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFBcastEnd()`, `PetscSFBcastBegin()` 1523d0295fc0SJunchao Zhang @*/ 1524d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFBcastWithMemTypeBegin(PetscSF sf, MPI_Datatype unit, PetscMemType rootmtype, const void *rootdata, PetscMemType leafmtype, void *leafdata, MPI_Op op) 1525d71ae5a4SJacob Faibussowitsch { 1526d0295fc0SJunchao Zhang PetscFunctionBegin; 1527d0295fc0SJunchao Zhang PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 15289566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 15299566063dSJacob Faibussowitsch if (!sf->vscat.logging) PetscCall(PetscLogEventBegin(PETSCSF_BcastBegin, sf, 0, 0, 0)); 1530dbbe0bcdSBarry Smith PetscUseTypeMethod(sf, BcastBegin, unit, rootmtype, rootdata, leafmtype, leafdata, op); 15319566063dSJacob Faibussowitsch if (!sf->vscat.logging) PetscCall(PetscLogEventEnd(PETSCSF_BcastBegin, sf, 0, 0, 0)); 15323ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1533d0295fc0SJunchao Zhang } 1534d0295fc0SJunchao Zhang 1535d0295fc0SJunchao Zhang /*@C 153620662ed9SBarry Smith PetscSFBcastEnd - end a broadcast and reduce operation started with `PetscSFBcastBegin()` or `PetscSFBcastWithMemTypeBegin()` 15373482bfa8SJunchao Zhang 15383482bfa8SJunchao Zhang Collective 15393482bfa8SJunchao Zhang 15404165533cSJose E. Roman Input Parameters: 15413482bfa8SJunchao Zhang + sf - star forest 15423482bfa8SJunchao Zhang . unit - data type 15433482bfa8SJunchao Zhang . rootdata - buffer to broadcast 15443482bfa8SJunchao Zhang - op - operation to use for reduction 15453482bfa8SJunchao Zhang 15464165533cSJose E. Roman Output Parameter: 15473482bfa8SJunchao Zhang . leafdata - buffer to be reduced with values from each leaf's respective root 15483482bfa8SJunchao Zhang 15493482bfa8SJunchao Zhang Level: intermediate 15503482bfa8SJunchao Zhang 1551cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFSetGraph()`, `PetscSFReduceEnd()` 15523482bfa8SJunchao Zhang @*/ 1553d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFBcastEnd(PetscSF sf, MPI_Datatype unit, const void *rootdata, void *leafdata, MPI_Op op) 1554d71ae5a4SJacob Faibussowitsch { 15553482bfa8SJunchao Zhang PetscFunctionBegin; 15563482bfa8SJunchao Zhang PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 15579566063dSJacob Faibussowitsch if (!sf->vscat.logging) PetscCall(PetscLogEventBegin(PETSCSF_BcastEnd, sf, 0, 0, 0)); 1558dbbe0bcdSBarry Smith PetscUseTypeMethod(sf, BcastEnd, unit, rootdata, leafdata, op); 15599566063dSJacob Faibussowitsch if (!sf->vscat.logging) PetscCall(PetscLogEventEnd(PETSCSF_BcastEnd, sf, 0, 0, 0)); 15603ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 15613482bfa8SJunchao Zhang } 15623482bfa8SJunchao Zhang 15633482bfa8SJunchao Zhang /*@C 1564cab54364SBarry Smith PetscSFReduceBegin - begin reduction of leafdata into rootdata, to be completed with call to `PetscSFReduceEnd()` 156595fce210SBarry Smith 156695fce210SBarry Smith Collective 156795fce210SBarry Smith 15684165533cSJose E. Roman Input Parameters: 156995fce210SBarry Smith + sf - star forest 157095fce210SBarry Smith . unit - data type 157195fce210SBarry Smith . leafdata - values to reduce 157295fce210SBarry Smith - op - reduction operation 157395fce210SBarry Smith 15744165533cSJose E. Roman Output Parameter: 157595fce210SBarry Smith . rootdata - result of reduction of values from all leaves of each root 157695fce210SBarry Smith 157795fce210SBarry Smith Level: intermediate 157895fce210SBarry Smith 157920662ed9SBarry Smith Note: 158020662ed9SBarry Smith When PETSc is configured with device support, it will use its own mechanism to figure out whether the given data pointers 1581da81f932SPierre Jolivet are host pointers or device pointers, which may incur a noticeable cost. If you already knew the info, you should 1582cab54364SBarry Smith use `PetscSFReduceWithMemTypeBegin()` instead. 1583d0295fc0SJunchao Zhang 158420662ed9SBarry Smith .seealso: `PetscSF`, `PetscSFBcastBegin()`, `PetscSFReduceWithMemTypeBegin()`, `PetscSFReduceEnd()` 158595fce210SBarry Smith @*/ 1586d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFReduceBegin(PetscSF sf, MPI_Datatype unit, const void *leafdata, void *rootdata, MPI_Op op) 1587d71ae5a4SJacob Faibussowitsch { 1588eb02082bSJunchao Zhang PetscMemType rootmtype, leafmtype; 158995fce210SBarry Smith 159095fce210SBarry Smith PetscFunctionBegin; 159195fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 15929566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 15939566063dSJacob Faibussowitsch if (!sf->vscat.logging) PetscCall(PetscLogEventBegin(PETSCSF_ReduceBegin, sf, 0, 0, 0)); 15949566063dSJacob Faibussowitsch PetscCall(PetscGetMemType(rootdata, &rootmtype)); 15959566063dSJacob Faibussowitsch PetscCall(PetscGetMemType(leafdata, &leafmtype)); 1596f4f49eeaSPierre Jolivet PetscCall(sf->ops->ReduceBegin(sf, unit, leafmtype, leafdata, rootmtype, rootdata, op)); 15979566063dSJacob Faibussowitsch if (!sf->vscat.logging) PetscCall(PetscLogEventEnd(PETSCSF_ReduceBegin, sf, 0, 0, 0)); 15983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 159995fce210SBarry Smith } 160095fce210SBarry Smith 160195fce210SBarry Smith /*@C 1602cab54364SBarry Smith PetscSFReduceWithMemTypeBegin - begin reduction of leafdata into rootdata with explicit memory types, to be completed with call to `PetscSFReduceEnd()` 1603d0295fc0SJunchao Zhang 1604d0295fc0SJunchao Zhang Collective 1605d0295fc0SJunchao Zhang 16064165533cSJose E. Roman Input Parameters: 1607d0295fc0SJunchao Zhang + sf - star forest 1608d0295fc0SJunchao Zhang . unit - data type 1609d0295fc0SJunchao Zhang . leafmtype - memory type of leafdata 1610d0295fc0SJunchao Zhang . leafdata - values to reduce 1611d0295fc0SJunchao Zhang . rootmtype - memory type of rootdata 1612d0295fc0SJunchao Zhang - op - reduction operation 1613d0295fc0SJunchao Zhang 16144165533cSJose E. Roman Output Parameter: 1615d0295fc0SJunchao Zhang . rootdata - result of reduction of values from all leaves of each root 1616d0295fc0SJunchao Zhang 1617d0295fc0SJunchao Zhang Level: intermediate 1618d0295fc0SJunchao Zhang 161920662ed9SBarry Smith .seealso: `PetscSF`, `PetscSFBcastBegin()`, `PetscSFReduceBegin()`, `PetscSFReduceEnd()` 1620d0295fc0SJunchao Zhang @*/ 1621d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFReduceWithMemTypeBegin(PetscSF sf, MPI_Datatype unit, PetscMemType leafmtype, const void *leafdata, PetscMemType rootmtype, void *rootdata, MPI_Op op) 1622d71ae5a4SJacob Faibussowitsch { 1623d0295fc0SJunchao Zhang PetscFunctionBegin; 1624d0295fc0SJunchao Zhang PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 16259566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 16269566063dSJacob Faibussowitsch if (!sf->vscat.logging) PetscCall(PetscLogEventBegin(PETSCSF_ReduceBegin, sf, 0, 0, 0)); 1627f4f49eeaSPierre Jolivet PetscCall(sf->ops->ReduceBegin(sf, unit, leafmtype, leafdata, rootmtype, rootdata, op)); 16289566063dSJacob Faibussowitsch if (!sf->vscat.logging) PetscCall(PetscLogEventEnd(PETSCSF_ReduceBegin, sf, 0, 0, 0)); 16293ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1630d0295fc0SJunchao Zhang } 1631d0295fc0SJunchao Zhang 1632d0295fc0SJunchao Zhang /*@C 163320662ed9SBarry Smith PetscSFReduceEnd - end a reduction operation started with `PetscSFReduceBegin()` or `PetscSFReduceWithMemTypeBegin()` 163495fce210SBarry Smith 163595fce210SBarry Smith Collective 163695fce210SBarry Smith 16374165533cSJose E. Roman Input Parameters: 163895fce210SBarry Smith + sf - star forest 163995fce210SBarry Smith . unit - data type 164095fce210SBarry Smith . leafdata - values to reduce 164195fce210SBarry Smith - op - reduction operation 164295fce210SBarry Smith 16434165533cSJose E. Roman Output Parameter: 164495fce210SBarry Smith . rootdata - result of reduction of values from all leaves of each root 164595fce210SBarry Smith 164695fce210SBarry Smith Level: intermediate 164795fce210SBarry Smith 164820662ed9SBarry Smith .seealso: `PetscSF`, `PetscSFSetGraph()`, `PetscSFBcastEnd()`, `PetscSFReduceBegin()`, `PetscSFReduceWithMemTypeBegin()` 164995fce210SBarry Smith @*/ 1650d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFReduceEnd(PetscSF sf, MPI_Datatype unit, const void *leafdata, void *rootdata, MPI_Op op) 1651d71ae5a4SJacob Faibussowitsch { 165295fce210SBarry Smith PetscFunctionBegin; 165395fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 16549566063dSJacob Faibussowitsch if (!sf->vscat.logging) PetscCall(PetscLogEventBegin(PETSCSF_ReduceEnd, sf, 0, 0, 0)); 1655dbbe0bcdSBarry Smith PetscUseTypeMethod(sf, ReduceEnd, unit, leafdata, rootdata, op); 16569566063dSJacob Faibussowitsch if (!sf->vscat.logging) PetscCall(PetscLogEventEnd(PETSCSF_ReduceEnd, sf, 0, 0, 0)); 16573ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 165895fce210SBarry Smith } 165995fce210SBarry Smith 166095fce210SBarry Smith /*@C 1661cab54364SBarry Smith PetscSFFetchAndOpBegin - begin operation that fetches values from root and updates atomically by applying operation using my leaf value, 1662cab54364SBarry Smith to be completed with `PetscSFFetchAndOpEnd()` 1663a1729e3fSJunchao Zhang 1664a1729e3fSJunchao Zhang Collective 1665a1729e3fSJunchao Zhang 16664165533cSJose E. Roman Input Parameters: 1667a1729e3fSJunchao Zhang + sf - star forest 1668a1729e3fSJunchao Zhang . unit - data type 1669a1729e3fSJunchao Zhang . leafdata - leaf values to use in reduction 1670a1729e3fSJunchao Zhang - op - operation to use for reduction 1671a1729e3fSJunchao Zhang 16724165533cSJose E. Roman Output Parameters: 1673a1729e3fSJunchao Zhang + rootdata - root values to be updated, input state is seen by first process to perform an update 1674a1729e3fSJunchao Zhang - leafupdate - state at each leaf's respective root immediately prior to my atomic update 1675a1729e3fSJunchao Zhang 1676a1729e3fSJunchao Zhang Level: advanced 1677a1729e3fSJunchao Zhang 1678a1729e3fSJunchao Zhang Note: 1679a1729e3fSJunchao Zhang The update is only atomic at the granularity provided by the hardware. Different roots referenced by the same process 1680a1729e3fSJunchao Zhang might be updated in a different order. Furthermore, if a composite type is used for the unit datatype, atomicity is 1681a1729e3fSJunchao Zhang not guaranteed across the whole vertex. Therefore, this function is mostly only used with primitive types such as 1682a1729e3fSJunchao Zhang integers. 1683a1729e3fSJunchao Zhang 1684cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFComputeDegreeBegin()`, `PetscSFReduceBegin()`, `PetscSFSetGraph()` 1685a1729e3fSJunchao Zhang @*/ 1686d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFFetchAndOpBegin(PetscSF sf, MPI_Datatype unit, void *rootdata, const void *leafdata, void *leafupdate, MPI_Op op) 1687d71ae5a4SJacob Faibussowitsch { 1688eb02082bSJunchao Zhang PetscMemType rootmtype, leafmtype, leafupdatemtype; 1689a1729e3fSJunchao Zhang 1690a1729e3fSJunchao Zhang PetscFunctionBegin; 1691a1729e3fSJunchao Zhang PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 16929566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 16939566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(PETSCSF_FetchAndOpBegin, sf, 0, 0, 0)); 16949566063dSJacob Faibussowitsch PetscCall(PetscGetMemType(rootdata, &rootmtype)); 16959566063dSJacob Faibussowitsch PetscCall(PetscGetMemType(leafdata, &leafmtype)); 16969566063dSJacob Faibussowitsch PetscCall(PetscGetMemType(leafupdate, &leafupdatemtype)); 169708401ef6SPierre Jolivet PetscCheck(leafmtype == leafupdatemtype, PETSC_COMM_SELF, PETSC_ERR_SUP, "No support for leafdata and leafupdate in different memory types"); 1698dbbe0bcdSBarry Smith PetscUseTypeMethod(sf, FetchAndOpBegin, unit, rootmtype, rootdata, leafmtype, leafdata, leafupdate, op); 16999566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(PETSCSF_FetchAndOpBegin, sf, 0, 0, 0)); 17003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1701a1729e3fSJunchao Zhang } 1702a1729e3fSJunchao Zhang 1703a1729e3fSJunchao Zhang /*@C 1704cab54364SBarry Smith PetscSFFetchAndOpWithMemTypeBegin - begin operation with explicit memory types that fetches values from root and updates atomically by 1705cab54364SBarry Smith applying operation using my leaf value, to be completed with `PetscSFFetchAndOpEnd()` 1706d3b3e55cSJunchao Zhang 1707d3b3e55cSJunchao Zhang Collective 1708d3b3e55cSJunchao Zhang 1709d3b3e55cSJunchao Zhang Input Parameters: 1710d3b3e55cSJunchao Zhang + sf - star forest 1711d3b3e55cSJunchao Zhang . unit - data type 1712d3b3e55cSJunchao Zhang . rootmtype - memory type of rootdata 1713d3b3e55cSJunchao Zhang . leafmtype - memory type of leafdata 1714d3b3e55cSJunchao Zhang . leafdata - leaf values to use in reduction 1715d3b3e55cSJunchao Zhang . leafupdatemtype - memory type of leafupdate 1716d3b3e55cSJunchao Zhang - op - operation to use for reduction 1717d3b3e55cSJunchao Zhang 1718d3b3e55cSJunchao Zhang Output Parameters: 1719d3b3e55cSJunchao Zhang + rootdata - root values to be updated, input state is seen by first process to perform an update 1720d3b3e55cSJunchao Zhang - leafupdate - state at each leaf's respective root immediately prior to my atomic update 1721d3b3e55cSJunchao Zhang 1722d3b3e55cSJunchao Zhang Level: advanced 1723d3b3e55cSJunchao Zhang 1724cab54364SBarry Smith Note: 1725cab54364SBarry Smith See `PetscSFFetchAndOpBegin()` for more details. 1726d3b3e55cSJunchao Zhang 172720662ed9SBarry Smith .seealso: `PetscSF`, `PetscSFFetchAndOpBegin()`, `PetscSFComputeDegreeBegin()`, `PetscSFReduceBegin()`, `PetscSFSetGraph()`, `PetscSFFetchAndOpEnd()` 1728d3b3e55cSJunchao Zhang @*/ 1729d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFFetchAndOpWithMemTypeBegin(PetscSF sf, MPI_Datatype unit, PetscMemType rootmtype, void *rootdata, PetscMemType leafmtype, const void *leafdata, PetscMemType leafupdatemtype, void *leafupdate, MPI_Op op) 1730d71ae5a4SJacob Faibussowitsch { 1731d3b3e55cSJunchao Zhang PetscFunctionBegin; 1732d3b3e55cSJunchao Zhang PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 17339566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 17349566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(PETSCSF_FetchAndOpBegin, sf, 0, 0, 0)); 173508401ef6SPierre Jolivet PetscCheck(leafmtype == leafupdatemtype, PETSC_COMM_SELF, PETSC_ERR_SUP, "No support for leafdata and leafupdate in different memory types"); 1736dbbe0bcdSBarry Smith PetscUseTypeMethod(sf, FetchAndOpBegin, unit, rootmtype, rootdata, leafmtype, leafdata, leafupdate, op); 17379566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(PETSCSF_FetchAndOpBegin, sf, 0, 0, 0)); 17383ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1739d3b3e55cSJunchao Zhang } 1740d3b3e55cSJunchao Zhang 1741d3b3e55cSJunchao Zhang /*@C 174220662ed9SBarry Smith PetscSFFetchAndOpEnd - end operation started in matching call to `PetscSFFetchAndOpBegin()` or `PetscSFFetchAndOpWithMemTypeBegin()` 174320662ed9SBarry Smith to fetch values from roots and update atomically by applying operation using my leaf value 1744a1729e3fSJunchao Zhang 1745a1729e3fSJunchao Zhang Collective 1746a1729e3fSJunchao Zhang 17474165533cSJose E. Roman Input Parameters: 1748a1729e3fSJunchao Zhang + sf - star forest 1749a1729e3fSJunchao Zhang . unit - data type 1750a1729e3fSJunchao Zhang . leafdata - leaf values to use in reduction 1751a1729e3fSJunchao Zhang - op - operation to use for reduction 1752a1729e3fSJunchao Zhang 17534165533cSJose E. Roman Output Parameters: 1754a1729e3fSJunchao Zhang + rootdata - root values to be updated, input state is seen by first process to perform an update 1755a1729e3fSJunchao Zhang - leafupdate - state at each leaf's respective root immediately prior to my atomic update 1756a1729e3fSJunchao Zhang 1757a1729e3fSJunchao Zhang Level: advanced 1758a1729e3fSJunchao Zhang 175920662ed9SBarry Smith .seealso: `PetscSF`, `PetscSFComputeDegreeEnd()`, `PetscSFReduceEnd()`, `PetscSFSetGraph()`, `PetscSFFetchAndOpBegin()`, `PetscSFFetchAndOpWithMemTypeBegin()` 1760a1729e3fSJunchao Zhang @*/ 1761d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFFetchAndOpEnd(PetscSF sf, MPI_Datatype unit, void *rootdata, const void *leafdata, void *leafupdate, MPI_Op op) 1762d71ae5a4SJacob Faibussowitsch { 1763a1729e3fSJunchao Zhang PetscFunctionBegin; 1764a1729e3fSJunchao Zhang PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 17659566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(PETSCSF_FetchAndOpEnd, sf, 0, 0, 0)); 1766dbbe0bcdSBarry Smith PetscUseTypeMethod(sf, FetchAndOpEnd, unit, rootdata, leafdata, leafupdate, op); 17679566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(PETSCSF_FetchAndOpEnd, sf, 0, 0, 0)); 17683ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1769a1729e3fSJunchao Zhang } 1770a1729e3fSJunchao Zhang 1771a1729e3fSJunchao Zhang /*@C 1772cab54364SBarry Smith PetscSFComputeDegreeBegin - begin computation of degree for each root vertex, to be completed with `PetscSFComputeDegreeEnd()` 177395fce210SBarry Smith 177495fce210SBarry Smith Collective 177595fce210SBarry Smith 17764165533cSJose E. Roman Input Parameter: 177795fce210SBarry Smith . sf - star forest 177895fce210SBarry Smith 17794165533cSJose E. Roman Output Parameter: 178095fce210SBarry Smith . degree - degree of each root vertex 178195fce210SBarry Smith 178295fce210SBarry Smith Level: advanced 178395fce210SBarry Smith 1784cab54364SBarry Smith Note: 178520662ed9SBarry Smith The returned array is owned by `PetscSF` and automatically freed by `PetscSFDestroy()`. Hence there is no need to call `PetscFree()` on it. 1786ffe67aa5SVáclav Hapla 1787cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFGatherBegin()`, `PetscSFComputeDegreeEnd()` 178895fce210SBarry Smith @*/ 17896497c311SBarry Smith PetscErrorCode PetscSFComputeDegreeBegin(PetscSF sf, const PetscInt *degree[]) 1790d71ae5a4SJacob Faibussowitsch { 179195fce210SBarry Smith PetscFunctionBegin; 179295fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 179395fce210SBarry Smith PetscSFCheckGraphSet(sf, 1); 17944f572ea9SToby Isaac PetscAssertPointer(degree, 2); 1795803bd9e8SMatthew G. Knepley if (!sf->degreeknown) { 17965b0d146aSStefano Zampini PetscInt i, nroots = sf->nroots, maxlocal; 179728b400f6SJacob Faibussowitsch PetscCheck(!sf->degree, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Calls to PetscSFComputeDegreeBegin() cannot be nested."); 17985b0d146aSStefano Zampini maxlocal = sf->maxleaf - sf->minleaf + 1; 17999566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nroots, &sf->degree)); 18009566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(PetscMax(maxlocal, 1), &sf->degreetmp)); /* allocate at least one entry, see check in PetscSFComputeDegreeEnd() */ 180129046d53SLisandro Dalcin for (i = 0; i < nroots; i++) sf->degree[i] = 0; 18029837ea96SMatthew G. Knepley for (i = 0; i < maxlocal; i++) sf->degreetmp[i] = 1; 18039566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sf, MPIU_INT, sf->degreetmp - sf->minleaf, sf->degree, MPI_SUM)); 180495fce210SBarry Smith } 180595fce210SBarry Smith *degree = NULL; 18063ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 180795fce210SBarry Smith } 180895fce210SBarry Smith 180995fce210SBarry Smith /*@C 1810cab54364SBarry Smith PetscSFComputeDegreeEnd - complete computation of degree for each root vertex, started with `PetscSFComputeDegreeBegin()` 181195fce210SBarry Smith 181295fce210SBarry Smith Collective 181395fce210SBarry Smith 18144165533cSJose E. Roman Input Parameter: 181595fce210SBarry Smith . sf - star forest 181695fce210SBarry Smith 18174165533cSJose E. Roman Output Parameter: 181895fce210SBarry Smith . degree - degree of each root vertex 181995fce210SBarry Smith 182095fce210SBarry Smith Level: developer 182195fce210SBarry Smith 1822cab54364SBarry Smith Note: 182320662ed9SBarry Smith The returned array is owned by `PetscSF` and automatically freed by `PetscSFDestroy()`. Hence there is no need to call `PetscFree()` on it. 1824ffe67aa5SVáclav Hapla 1825cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFGatherBegin()`, `PetscSFComputeDegreeBegin()` 182695fce210SBarry Smith @*/ 18279c9354e5SBarry Smith PetscErrorCode PetscSFComputeDegreeEnd(PetscSF sf, const PetscInt *degree[]) 1828d71ae5a4SJacob Faibussowitsch { 182995fce210SBarry Smith PetscFunctionBegin; 183095fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 183195fce210SBarry Smith PetscSFCheckGraphSet(sf, 1); 18324f572ea9SToby Isaac PetscAssertPointer(degree, 2); 183395fce210SBarry Smith if (!sf->degreeknown) { 183428b400f6SJacob Faibussowitsch PetscCheck(sf->degreetmp, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Must call PetscSFComputeDegreeBegin() before PetscSFComputeDegreeEnd()"); 18359566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf, MPIU_INT, sf->degreetmp - sf->minleaf, sf->degree, MPI_SUM)); 18369566063dSJacob Faibussowitsch PetscCall(PetscFree(sf->degreetmp)); 183795fce210SBarry Smith sf->degreeknown = PETSC_TRUE; 183895fce210SBarry Smith } 183995fce210SBarry Smith *degree = sf->degree; 18403ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 184195fce210SBarry Smith } 184295fce210SBarry Smith 1843673100f5SVaclav Hapla /*@C 184420662ed9SBarry Smith PetscSFComputeMultiRootOriginalNumbering - Returns original numbering of multi-roots (roots of multi-`PetscSF` returned by `PetscSFGetMultiSF()`). 184566dfcd1aSVaclav Hapla Each multi-root is assigned index of the corresponding original root. 1846673100f5SVaclav Hapla 1847673100f5SVaclav Hapla Collective 1848673100f5SVaclav Hapla 18494165533cSJose E. Roman Input Parameters: 1850673100f5SVaclav Hapla + sf - star forest 1851cab54364SBarry Smith - degree - degree of each root vertex, computed with `PetscSFComputeDegreeBegin()`/`PetscSFComputeDegreeEnd()` 1852673100f5SVaclav Hapla 18534165533cSJose E. Roman Output Parameters: 185420662ed9SBarry Smith + nMultiRoots - (optional) number of multi-roots (roots of multi-`PetscSF`) 185520662ed9SBarry Smith - multiRootsOrigNumbering - original indices of multi-roots; length of this array is `nMultiRoots` 1856673100f5SVaclav Hapla 1857673100f5SVaclav Hapla Level: developer 1858673100f5SVaclav Hapla 1859cab54364SBarry Smith Note: 186020662ed9SBarry Smith The returned array `multiRootsOrigNumbering` is newly allocated and should be destroyed with `PetscFree()` when no longer needed. 1861ffe67aa5SVáclav Hapla 1862cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFComputeDegreeBegin()`, `PetscSFComputeDegreeEnd()`, `PetscSFGetMultiSF()` 1863673100f5SVaclav Hapla @*/ 1864d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFComputeMultiRootOriginalNumbering(PetscSF sf, const PetscInt degree[], PetscInt *nMultiRoots, PetscInt *multiRootsOrigNumbering[]) 1865d71ae5a4SJacob Faibussowitsch { 1866673100f5SVaclav Hapla PetscSF msf; 186763bfac88SBarry Smith PetscInt k = 0, nroots, nmroots; 1868673100f5SVaclav Hapla 1869673100f5SVaclav Hapla PetscFunctionBegin; 1870673100f5SVaclav Hapla PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 18719566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sf, &nroots, NULL, NULL, NULL)); 18724f572ea9SToby Isaac if (nroots) PetscAssertPointer(degree, 2); 18734f572ea9SToby Isaac if (nMultiRoots) PetscAssertPointer(nMultiRoots, 3); 18744f572ea9SToby Isaac PetscAssertPointer(multiRootsOrigNumbering, 4); 18759566063dSJacob Faibussowitsch PetscCall(PetscSFGetMultiSF(sf, &msf)); 18769566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(msf, &nmroots, NULL, NULL, NULL)); 18779566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nmroots, multiRootsOrigNumbering)); 187863bfac88SBarry Smith for (PetscInt i = 0; i < nroots; i++) { 1879673100f5SVaclav Hapla if (!degree[i]) continue; 188063bfac88SBarry Smith for (PetscInt j = 0; j < degree[i]; j++, k++) (*multiRootsOrigNumbering)[k] = i; 1881673100f5SVaclav Hapla } 188208401ef6SPierre Jolivet PetscCheck(k == nmroots, PETSC_COMM_SELF, PETSC_ERR_PLIB, "sanity check fail"); 188366dfcd1aSVaclav Hapla if (nMultiRoots) *nMultiRoots = nmroots; 18843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 1885673100f5SVaclav Hapla } 1886673100f5SVaclav Hapla 188795fce210SBarry Smith /*@C 1888cab54364SBarry Smith PetscSFGatherBegin - begin pointwise gather of all leaves into multi-roots, to be completed with `PetscSFGatherEnd()` 188995fce210SBarry Smith 189095fce210SBarry Smith Collective 189195fce210SBarry Smith 18924165533cSJose E. Roman Input Parameters: 189395fce210SBarry Smith + sf - star forest 189495fce210SBarry Smith . unit - data type 189595fce210SBarry Smith - leafdata - leaf data to gather to roots 189695fce210SBarry Smith 18974165533cSJose E. Roman Output Parameter: 189895fce210SBarry Smith . multirootdata - root buffer to gather into, amount of space per root is equal to its degree 189995fce210SBarry Smith 190095fce210SBarry Smith Level: intermediate 190195fce210SBarry Smith 1902cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFComputeDegreeBegin()`, `PetscSFScatterBegin()` 190395fce210SBarry Smith @*/ 1904d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFGatherBegin(PetscSF sf, MPI_Datatype unit, const void *leafdata, void *multirootdata) 1905d71ae5a4SJacob Faibussowitsch { 1906a5526d50SJunchao Zhang PetscSF multi = NULL; 190795fce210SBarry Smith 190895fce210SBarry Smith PetscFunctionBegin; 190995fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 19109566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 19119566063dSJacob Faibussowitsch PetscCall(PetscSFGetMultiSF(sf, &multi)); 19129566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(multi, unit, leafdata, multirootdata, MPI_REPLACE)); 19133ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 191495fce210SBarry Smith } 191595fce210SBarry Smith 191695fce210SBarry Smith /*@C 1917cab54364SBarry Smith PetscSFGatherEnd - ends pointwise gather operation that was started with `PetscSFGatherBegin()` 191895fce210SBarry Smith 191995fce210SBarry Smith Collective 192095fce210SBarry Smith 19214165533cSJose E. Roman Input Parameters: 192295fce210SBarry Smith + sf - star forest 192395fce210SBarry Smith . unit - data type 192495fce210SBarry Smith - leafdata - leaf data to gather to roots 192595fce210SBarry Smith 19264165533cSJose E. Roman Output Parameter: 192795fce210SBarry Smith . multirootdata - root buffer to gather into, amount of space per root is equal to its degree 192895fce210SBarry Smith 192995fce210SBarry Smith Level: intermediate 193095fce210SBarry Smith 1931cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFComputeDegreeEnd()`, `PetscSFScatterEnd()` 193295fce210SBarry Smith @*/ 1933d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFGatherEnd(PetscSF sf, MPI_Datatype unit, const void *leafdata, void *multirootdata) 1934d71ae5a4SJacob Faibussowitsch { 1935a5526d50SJunchao Zhang PetscSF multi = NULL; 193695fce210SBarry Smith 193795fce210SBarry Smith PetscFunctionBegin; 193895fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 19399566063dSJacob Faibussowitsch PetscCall(PetscSFGetMultiSF(sf, &multi)); 19409566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(multi, unit, leafdata, multirootdata, MPI_REPLACE)); 19413ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 194295fce210SBarry Smith } 194395fce210SBarry Smith 194495fce210SBarry Smith /*@C 1945cab54364SBarry Smith PetscSFScatterBegin - begin pointwise scatter operation from multi-roots to leaves, to be completed with `PetscSFScatterEnd()` 194695fce210SBarry Smith 194795fce210SBarry Smith Collective 194895fce210SBarry Smith 19494165533cSJose E. Roman Input Parameters: 195095fce210SBarry Smith + sf - star forest 195195fce210SBarry Smith . unit - data type 195295fce210SBarry Smith - multirootdata - root buffer to send to each leaf, one unit of data per leaf 195395fce210SBarry Smith 19544165533cSJose E. Roman Output Parameter: 195595fce210SBarry Smith . leafdata - leaf data to be update with personal data from each respective root 195695fce210SBarry Smith 195795fce210SBarry Smith Level: intermediate 195895fce210SBarry Smith 195920662ed9SBarry Smith .seealso: `PetscSF`, `PetscSFComputeDegreeBegin()`, `PetscSFScatterEnd()` 196095fce210SBarry Smith @*/ 1961d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFScatterBegin(PetscSF sf, MPI_Datatype unit, const void *multirootdata, void *leafdata) 1962d71ae5a4SJacob Faibussowitsch { 1963a5526d50SJunchao Zhang PetscSF multi = NULL; 196495fce210SBarry Smith 196595fce210SBarry Smith PetscFunctionBegin; 196695fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 19679566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 19689566063dSJacob Faibussowitsch PetscCall(PetscSFGetMultiSF(sf, &multi)); 19699566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(multi, unit, multirootdata, leafdata, MPI_REPLACE)); 19703ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 197195fce210SBarry Smith } 197295fce210SBarry Smith 197395fce210SBarry Smith /*@C 1974cab54364SBarry Smith PetscSFScatterEnd - ends pointwise scatter operation that was started with `PetscSFScatterBegin()` 197595fce210SBarry Smith 197695fce210SBarry Smith Collective 197795fce210SBarry Smith 19784165533cSJose E. Roman Input Parameters: 197995fce210SBarry Smith + sf - star forest 198095fce210SBarry Smith . unit - data type 198195fce210SBarry Smith - multirootdata - root buffer to send to each leaf, one unit of data per leaf 198295fce210SBarry Smith 19834165533cSJose E. Roman Output Parameter: 198495fce210SBarry Smith . leafdata - leaf data to be update with personal data from each respective root 198595fce210SBarry Smith 198695fce210SBarry Smith Level: intermediate 198795fce210SBarry Smith 198820662ed9SBarry Smith .seealso: `PetscSF`, `PetscSFComputeDegreeEnd()`, `PetscSFScatterBegin()` 198995fce210SBarry Smith @*/ 1990d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFScatterEnd(PetscSF sf, MPI_Datatype unit, const void *multirootdata, void *leafdata) 1991d71ae5a4SJacob Faibussowitsch { 1992a5526d50SJunchao Zhang PetscSF multi = NULL; 199395fce210SBarry Smith 199495fce210SBarry Smith PetscFunctionBegin; 199595fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 19969566063dSJacob Faibussowitsch PetscCall(PetscSFGetMultiSF(sf, &multi)); 19979566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(multi, unit, multirootdata, leafdata, MPI_REPLACE)); 19983ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 199995fce210SBarry Smith } 2000a7b3aa13SAta Mesgarnejad 2001d71ae5a4SJacob Faibussowitsch static PetscErrorCode PetscSFCheckLeavesUnique_Private(PetscSF sf) 2002d71ae5a4SJacob Faibussowitsch { 2003a072220fSLawrence Mitchell PetscInt i, n, nleaves; 2004a072220fSLawrence Mitchell const PetscInt *ilocal = NULL; 2005a072220fSLawrence Mitchell PetscHSetI seen; 2006a072220fSLawrence Mitchell 2007a072220fSLawrence Mitchell PetscFunctionBegin; 2008b458e8f1SJose E. Roman if (PetscDefined(USE_DEBUG)) { 20099566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sf, NULL, &nleaves, &ilocal, NULL)); 20109566063dSJacob Faibussowitsch PetscCall(PetscHSetICreate(&seen)); 2011a072220fSLawrence Mitchell for (i = 0; i < nleaves; i++) { 2012a072220fSLawrence Mitchell const PetscInt leaf = ilocal ? ilocal[i] : i; 20139566063dSJacob Faibussowitsch PetscCall(PetscHSetIAdd(seen, leaf)); 2014a072220fSLawrence Mitchell } 20159566063dSJacob Faibussowitsch PetscCall(PetscHSetIGetSize(seen, &n)); 201608401ef6SPierre Jolivet PetscCheck(n == nleaves, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Provided leaves have repeated values: all leaves must be unique"); 20179566063dSJacob Faibussowitsch PetscCall(PetscHSetIDestroy(&seen)); 2018b458e8f1SJose E. Roman } 20193ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2020a072220fSLawrence Mitchell } 202154729392SStefano Zampini 2022a7b3aa13SAta Mesgarnejad /*@ 2023cab54364SBarry Smith PetscSFCompose - Compose a new `PetscSF` by putting the second `PetscSF` under the first one in a top (roots) down (leaves) view 2024a7b3aa13SAta Mesgarnejad 2025a7b3aa13SAta Mesgarnejad Input Parameters: 2026cab54364SBarry Smith + sfA - The first `PetscSF` 2027cab54364SBarry Smith - sfB - The second `PetscSF` 2028a7b3aa13SAta Mesgarnejad 20292fe279fdSBarry Smith Output Parameter: 2030cab54364SBarry Smith . sfBA - The composite `PetscSF` 2031a7b3aa13SAta Mesgarnejad 2032a7b3aa13SAta Mesgarnejad Level: developer 2033a7b3aa13SAta Mesgarnejad 2034a072220fSLawrence Mitchell Notes: 2035cab54364SBarry Smith Currently, the two `PetscSF`s must be defined on congruent communicators and they must be true star 203654729392SStefano Zampini forests, i.e. the same leaf is not connected with different roots. 203754729392SStefano Zampini 203820662ed9SBarry Smith `sfA`'s leaf space and `sfB`'s root space might be partially overlapped. The composition builds 203920662ed9SBarry Smith a graph with `sfA`'s roots and `sfB`'s leaves only when there is a path between them. Unconnected 204020662ed9SBarry Smith nodes (roots or leaves) are not in `sfBA`. Doing a `PetscSFBcastBegin()`/`PetscSFBcastEnd()` on the new `PetscSF` is equivalent to doing a 204120662ed9SBarry Smith `PetscSFBcastBegin()`/`PetscSFBcastEnd()` on `sfA`, then a `PetscSFBcastBegin()`/`PetscSFBcastEnd()` on `sfB`, on connected nodes. 2042a072220fSLawrence Mitchell 2043db781477SPatrick Sanan .seealso: `PetscSF`, `PetscSFComposeInverse()`, `PetscSFGetGraph()`, `PetscSFSetGraph()` 2044a7b3aa13SAta Mesgarnejad @*/ 2045d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFCompose(PetscSF sfA, PetscSF sfB, PetscSF *sfBA) 2046d71ae5a4SJacob Faibussowitsch { 2047a7b3aa13SAta Mesgarnejad const PetscSFNode *remotePointsA, *remotePointsB; 2048d41018fbSJunchao Zhang PetscSFNode *remotePointsBA = NULL, *reorderedRemotePointsA = NULL, *leafdataB; 204954729392SStefano Zampini const PetscInt *localPointsA, *localPointsB; 205054729392SStefano Zampini PetscInt *localPointsBA; 205154729392SStefano Zampini PetscInt i, numRootsA, numLeavesA, numRootsB, numLeavesB, minleaf, maxleaf, numLeavesBA; 205254729392SStefano Zampini PetscBool denseB; 2053a7b3aa13SAta Mesgarnejad 2054a7b3aa13SAta Mesgarnejad PetscFunctionBegin; 2055a7b3aa13SAta Mesgarnejad PetscValidHeaderSpecific(sfA, PETSCSF_CLASSID, 1); 205629046d53SLisandro Dalcin PetscSFCheckGraphSet(sfA, 1); 205729046d53SLisandro Dalcin PetscValidHeaderSpecific(sfB, PETSCSF_CLASSID, 2); 205829046d53SLisandro Dalcin PetscSFCheckGraphSet(sfB, 2); 205954729392SStefano Zampini PetscCheckSameComm(sfA, 1, sfB, 2); 20604f572ea9SToby Isaac PetscAssertPointer(sfBA, 3); 20619566063dSJacob Faibussowitsch PetscCall(PetscSFCheckLeavesUnique_Private(sfA)); 20629566063dSJacob Faibussowitsch PetscCall(PetscSFCheckLeavesUnique_Private(sfB)); 206354729392SStefano Zampini 20649566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfA, &numRootsA, &numLeavesA, &localPointsA, &remotePointsA)); 20659566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfB, &numRootsB, &numLeavesB, &localPointsB, &remotePointsB)); 206620662ed9SBarry Smith /* Make sure that PetscSFBcast{Begin, End}(sfB, ...) works with root data of size 206720662ed9SBarry Smith numRootsB; otherwise, garbage will be broadcasted. 206820662ed9SBarry Smith Example (comm size = 1): 206920662ed9SBarry Smith sfA: 0 <- (0, 0) 207020662ed9SBarry Smith sfB: 100 <- (0, 0) 207120662ed9SBarry Smith 101 <- (0, 1) 207220662ed9SBarry Smith Here, we have remotePointsA = [(0, 0)], but for remotePointsA to be a valid tartget 207320662ed9SBarry Smith of sfB, it has to be recasted as [(0, 0), (-1, -1)] so that points 100 and 101 would 207420662ed9SBarry Smith receive (0, 0) and (-1, -1), respectively, when PetscSFBcast(sfB, ...) is called on 207520662ed9SBarry Smith remotePointsA; if not recasted, point 101 would receive a garbage value. */ 20769566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numRootsB, &reorderedRemotePointsA)); 207754729392SStefano Zampini for (i = 0; i < numRootsB; i++) { 207854729392SStefano Zampini reorderedRemotePointsA[i].rank = -1; 207954729392SStefano Zampini reorderedRemotePointsA[i].index = -1; 208054729392SStefano Zampini } 208154729392SStefano Zampini for (i = 0; i < numLeavesA; i++) { 20820ea77edaSksagiyam PetscInt localp = localPointsA ? localPointsA[i] : i; 20830ea77edaSksagiyam 20840ea77edaSksagiyam if (localp >= numRootsB) continue; 20850ea77edaSksagiyam reorderedRemotePointsA[localp] = remotePointsA[i]; 208654729392SStefano Zampini } 2087d41018fbSJunchao Zhang remotePointsA = reorderedRemotePointsA; 20889566063dSJacob Faibussowitsch PetscCall(PetscSFGetLeafRange(sfB, &minleaf, &maxleaf)); 20899566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(maxleaf - minleaf + 1, &leafdataB)); 20900ea77edaSksagiyam for (i = 0; i < maxleaf - minleaf + 1; i++) { 20910ea77edaSksagiyam leafdataB[i].rank = -1; 20920ea77edaSksagiyam leafdataB[i].index = -1; 20930ea77edaSksagiyam } 20946497c311SBarry Smith PetscCall(PetscSFBcastBegin(sfB, MPIU_SF_NODE, remotePointsA, PetscSafePointerPlusOffset(leafdataB, -minleaf), MPI_REPLACE)); 20956497c311SBarry Smith PetscCall(PetscSFBcastEnd(sfB, MPIU_SF_NODE, remotePointsA, PetscSafePointerPlusOffset(leafdataB, -minleaf), MPI_REPLACE)); 20969566063dSJacob Faibussowitsch PetscCall(PetscFree(reorderedRemotePointsA)); 2097d41018fbSJunchao Zhang 209854729392SStefano Zampini denseB = (PetscBool)!localPointsB; 209954729392SStefano Zampini for (i = 0, numLeavesBA = 0; i < numLeavesB; i++) { 210054729392SStefano Zampini if (leafdataB[localPointsB ? localPointsB[i] - minleaf : i].rank == -1) denseB = PETSC_FALSE; 210154729392SStefano Zampini else numLeavesBA++; 210254729392SStefano Zampini } 210354729392SStefano Zampini if (denseB) { 2104d41018fbSJunchao Zhang localPointsBA = NULL; 2105d41018fbSJunchao Zhang remotePointsBA = leafdataB; 2106d41018fbSJunchao Zhang } else { 21079566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numLeavesBA, &localPointsBA)); 21089566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numLeavesBA, &remotePointsBA)); 210954729392SStefano Zampini for (i = 0, numLeavesBA = 0; i < numLeavesB; i++) { 211054729392SStefano Zampini const PetscInt l = localPointsB ? localPointsB[i] : i; 211154729392SStefano Zampini 211254729392SStefano Zampini if (leafdataB[l - minleaf].rank == -1) continue; 211354729392SStefano Zampini remotePointsBA[numLeavesBA] = leafdataB[l - minleaf]; 211454729392SStefano Zampini localPointsBA[numLeavesBA] = l; 211554729392SStefano Zampini numLeavesBA++; 211654729392SStefano Zampini } 21179566063dSJacob Faibussowitsch PetscCall(PetscFree(leafdataB)); 2118d41018fbSJunchao Zhang } 21199566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)sfA), sfBA)); 21209566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(*sfBA)); 21219566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(*sfBA, numRootsA, numLeavesBA, localPointsBA, PETSC_OWN_POINTER, remotePointsBA, PETSC_OWN_POINTER)); 21223ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2123a7b3aa13SAta Mesgarnejad } 21241c6ba672SJunchao Zhang 212504c0ada0SJunchao Zhang /*@ 2126cab54364SBarry Smith PetscSFComposeInverse - Compose a new `PetscSF` by putting the inverse of the second `PetscSF` under the first one 212704c0ada0SJunchao Zhang 212804c0ada0SJunchao Zhang Input Parameters: 2129cab54364SBarry Smith + sfA - The first `PetscSF` 2130cab54364SBarry Smith - sfB - The second `PetscSF` 213104c0ada0SJunchao Zhang 21322fe279fdSBarry Smith Output Parameter: 2133cab54364SBarry Smith . sfBA - The composite `PetscSF`. 213404c0ada0SJunchao Zhang 213504c0ada0SJunchao Zhang Level: developer 213604c0ada0SJunchao Zhang 213754729392SStefano Zampini Notes: 213820662ed9SBarry Smith Currently, the two `PetscSF`s must be defined on congruent communicators and they must be true star 213954729392SStefano Zampini forests, i.e. the same leaf is not connected with different roots. Even more, all roots of the 214020662ed9SBarry Smith second `PetscSF` must have a degree of 1, i.e., no roots have more than one leaf connected. 214154729392SStefano Zampini 214220662ed9SBarry Smith `sfA`'s leaf space and `sfB`'s leaf space might be partially overlapped. The composition builds 214320662ed9SBarry Smith a graph with `sfA`'s roots and `sfB`'s roots only when there is a path between them. Unconnected 214420662ed9SBarry Smith roots are not in `sfBA`. Doing a `PetscSFBcastBegin()`/`PetscSFBcastEnd()` on the new `PetscSF` is equivalent to doing a `PetscSFBcastBegin()`/`PetscSFBcastEnd()` 214520662ed9SBarry Smith on `sfA`, then 214620662ed9SBarry Smith a `PetscSFReduceBegin()`/`PetscSFReduceEnd()` on `sfB`, on connected roots. 214754729392SStefano Zampini 2148db781477SPatrick Sanan .seealso: `PetscSF`, `PetscSFCompose()`, `PetscSFGetGraph()`, `PetscSFSetGraph()`, `PetscSFCreateInverseSF()` 214904c0ada0SJunchao Zhang @*/ 2150d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFComposeInverse(PetscSF sfA, PetscSF sfB, PetscSF *sfBA) 2151d71ae5a4SJacob Faibussowitsch { 215204c0ada0SJunchao Zhang const PetscSFNode *remotePointsA, *remotePointsB; 215304c0ada0SJunchao Zhang PetscSFNode *remotePointsBA; 215404c0ada0SJunchao Zhang const PetscInt *localPointsA, *localPointsB; 215554729392SStefano Zampini PetscSFNode *reorderedRemotePointsA = NULL; 215654729392SStefano Zampini PetscInt i, numRootsA, numLeavesA, numLeavesBA, numRootsB, numLeavesB, minleaf, maxleaf, *localPointsBA; 21575b0d146aSStefano Zampini MPI_Op op; 21585b0d146aSStefano Zampini #if defined(PETSC_USE_64BIT_INDICES) 21595b0d146aSStefano Zampini PetscBool iswin; 21605b0d146aSStefano Zampini #endif 216104c0ada0SJunchao Zhang 216204c0ada0SJunchao Zhang PetscFunctionBegin; 216304c0ada0SJunchao Zhang PetscValidHeaderSpecific(sfA, PETSCSF_CLASSID, 1); 216404c0ada0SJunchao Zhang PetscSFCheckGraphSet(sfA, 1); 216504c0ada0SJunchao Zhang PetscValidHeaderSpecific(sfB, PETSCSF_CLASSID, 2); 216604c0ada0SJunchao Zhang PetscSFCheckGraphSet(sfB, 2); 216754729392SStefano Zampini PetscCheckSameComm(sfA, 1, sfB, 2); 21684f572ea9SToby Isaac PetscAssertPointer(sfBA, 3); 21699566063dSJacob Faibussowitsch PetscCall(PetscSFCheckLeavesUnique_Private(sfA)); 21709566063dSJacob Faibussowitsch PetscCall(PetscSFCheckLeavesUnique_Private(sfB)); 217154729392SStefano Zampini 21729566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfA, &numRootsA, &numLeavesA, &localPointsA, &remotePointsA)); 21739566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfB, &numRootsB, &numLeavesB, &localPointsB, &remotePointsB)); 21745b0d146aSStefano Zampini 21755b0d146aSStefano Zampini /* TODO: Check roots of sfB have degree of 1 */ 21765b0d146aSStefano Zampini /* Once we implement it, we can replace the MPI_MAXLOC 217783df288dSJunchao Zhang with MPI_REPLACE. In that case, MPI_MAXLOC and MPI_REPLACE have the same effect. 21785b0d146aSStefano Zampini We use MPI_MAXLOC only to have a deterministic output from this routine if 21795b0d146aSStefano Zampini the root condition is not meet. 21805b0d146aSStefano Zampini */ 21815b0d146aSStefano Zampini op = MPI_MAXLOC; 21825b0d146aSStefano Zampini #if defined(PETSC_USE_64BIT_INDICES) 21835b0d146aSStefano Zampini /* we accept a non-deterministic output (if any) with PETSCSFWINDOW, since MPI_MAXLOC cannot operate on MPIU_2INT with MPI_Accumulate */ 21849566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)sfB, PETSCSFWINDOW, &iswin)); 218583df288dSJunchao Zhang if (iswin) op = MPI_REPLACE; 21865b0d146aSStefano Zampini #endif 21875b0d146aSStefano Zampini 21889566063dSJacob Faibussowitsch PetscCall(PetscSFGetLeafRange(sfB, &minleaf, &maxleaf)); 21899566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(maxleaf - minleaf + 1, &reorderedRemotePointsA)); 219054729392SStefano Zampini for (i = 0; i < maxleaf - minleaf + 1; i++) { 219154729392SStefano Zampini reorderedRemotePointsA[i].rank = -1; 219254729392SStefano Zampini reorderedRemotePointsA[i].index = -1; 219354729392SStefano Zampini } 219454729392SStefano Zampini if (localPointsA) { 219554729392SStefano Zampini for (i = 0; i < numLeavesA; i++) { 219654729392SStefano Zampini if (localPointsA[i] > maxleaf || localPointsA[i] < minleaf) continue; 219754729392SStefano Zampini reorderedRemotePointsA[localPointsA[i] - minleaf] = remotePointsA[i]; 219854729392SStefano Zampini } 219954729392SStefano Zampini } else { 220054729392SStefano Zampini for (i = 0; i < numLeavesA; i++) { 220154729392SStefano Zampini if (i > maxleaf || i < minleaf) continue; 220254729392SStefano Zampini reorderedRemotePointsA[i - minleaf] = remotePointsA[i]; 220354729392SStefano Zampini } 220454729392SStefano Zampini } 220554729392SStefano Zampini 22069566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numRootsB, &localPointsBA)); 22079566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numRootsB, &remotePointsBA)); 220854729392SStefano Zampini for (i = 0; i < numRootsB; i++) { 220954729392SStefano Zampini remotePointsBA[i].rank = -1; 221054729392SStefano Zampini remotePointsBA[i].index = -1; 221154729392SStefano Zampini } 221254729392SStefano Zampini 22136497c311SBarry Smith PetscCall(PetscSFReduceBegin(sfB, MPIU_SF_NODE, PetscSafePointerPlusOffset(reorderedRemotePointsA, -minleaf), remotePointsBA, op)); 22146497c311SBarry Smith PetscCall(PetscSFReduceEnd(sfB, MPIU_SF_NODE, PetscSafePointerPlusOffset(reorderedRemotePointsA, -minleaf), remotePointsBA, op)); 22159566063dSJacob Faibussowitsch PetscCall(PetscFree(reorderedRemotePointsA)); 221654729392SStefano Zampini for (i = 0, numLeavesBA = 0; i < numRootsB; i++) { 221754729392SStefano Zampini if (remotePointsBA[i].rank == -1) continue; 221854729392SStefano Zampini remotePointsBA[numLeavesBA].rank = remotePointsBA[i].rank; 221954729392SStefano Zampini remotePointsBA[numLeavesBA].index = remotePointsBA[i].index; 222054729392SStefano Zampini localPointsBA[numLeavesBA] = i; 222154729392SStefano Zampini numLeavesBA++; 222254729392SStefano Zampini } 22239566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)sfA), sfBA)); 22249566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(*sfBA)); 22259566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(*sfBA, numRootsA, numLeavesBA, localPointsBA, PETSC_OWN_POINTER, remotePointsBA, PETSC_OWN_POINTER)); 22263ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 222704c0ada0SJunchao Zhang } 222804c0ada0SJunchao Zhang 22291c6ba672SJunchao Zhang /* 2230cab54364SBarry Smith PetscSFCreateLocalSF_Private - Creates a local `PetscSF` that only has intra-process edges of the global `PetscSF` 22311c6ba672SJunchao Zhang 22322fe279fdSBarry Smith Input Parameter: 2233cab54364SBarry Smith . sf - The global `PetscSF` 22341c6ba672SJunchao Zhang 22352fe279fdSBarry Smith Output Parameter: 2236cab54364SBarry Smith . out - The local `PetscSF` 2237cab54364SBarry Smith 2238cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFCreate()` 22391c6ba672SJunchao Zhang */ 2240d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFCreateLocalSF_Private(PetscSF sf, PetscSF *out) 2241d71ae5a4SJacob Faibussowitsch { 22421c6ba672SJunchao Zhang MPI_Comm comm; 22431c6ba672SJunchao Zhang PetscMPIInt myrank; 22441c6ba672SJunchao Zhang const PetscInt *ilocal; 22451c6ba672SJunchao Zhang const PetscSFNode *iremote; 22461c6ba672SJunchao Zhang PetscInt i, j, nroots, nleaves, lnleaves, *lilocal; 22471c6ba672SJunchao Zhang PetscSFNode *liremote; 22481c6ba672SJunchao Zhang PetscSF lsf; 22491c6ba672SJunchao Zhang 22501c6ba672SJunchao Zhang PetscFunctionBegin; 22511c6ba672SJunchao Zhang PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 2252dbbe0bcdSBarry Smith if (sf->ops->CreateLocalSF) PetscUseTypeMethod(sf, CreateLocalSF, out); 2253dbbe0bcdSBarry Smith else { 2254835f2295SStefano Zampini PetscMPIInt irank; 2255835f2295SStefano Zampini 22561c6ba672SJunchao Zhang /* Could use PetscSFCreateEmbeddedLeafSF, but since we know the comm is PETSC_COMM_SELF, we can make it fast */ 22579566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)sf, &comm)); 22589566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &myrank)); 22591c6ba672SJunchao Zhang 22601c6ba672SJunchao Zhang /* Find out local edges and build a local SF */ 22619566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sf, &nroots, &nleaves, &ilocal, &iremote)); 22629371c9d4SSatish Balay for (i = lnleaves = 0; i < nleaves; i++) { 2263835f2295SStefano Zampini PetscCall(PetscMPIIntCast(iremote[i].rank, &irank)); 2264835f2295SStefano Zampini if (irank == myrank) lnleaves++; 22659371c9d4SSatish Balay } 22669566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(lnleaves, &lilocal)); 22679566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(lnleaves, &liremote)); 22681c6ba672SJunchao Zhang 22691c6ba672SJunchao Zhang for (i = j = 0; i < nleaves; i++) { 2270835f2295SStefano Zampini PetscCall(PetscMPIIntCast(iremote[i].rank, &irank)); 2271835f2295SStefano Zampini if (irank == myrank) { 22721c6ba672SJunchao Zhang lilocal[j] = ilocal ? ilocal[i] : i; /* ilocal=NULL for contiguous storage */ 22731c6ba672SJunchao Zhang liremote[j].rank = 0; /* rank in PETSC_COMM_SELF */ 22741c6ba672SJunchao Zhang liremote[j].index = iremote[i].index; 22751c6ba672SJunchao Zhang j++; 22761c6ba672SJunchao Zhang } 22771c6ba672SJunchao Zhang } 22789566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PETSC_COMM_SELF, &lsf)); 22799566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(lsf)); 22809566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(lsf, nroots, lnleaves, lilocal, PETSC_OWN_POINTER, liremote, PETSC_OWN_POINTER)); 22819566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(lsf)); 22821c6ba672SJunchao Zhang *out = lsf; 22831c6ba672SJunchao Zhang } 22843ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 22851c6ba672SJunchao Zhang } 2286dd5b3ca6SJunchao Zhang 2287dd5b3ca6SJunchao Zhang /* Similar to PetscSFBcast, but only Bcast to leaves on rank 0 */ 2288d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFBcastToZero_Private(PetscSF sf, MPI_Datatype unit, const void *rootdata, void *leafdata) 2289d71ae5a4SJacob Faibussowitsch { 2290eb02082bSJunchao Zhang PetscMemType rootmtype, leafmtype; 2291dd5b3ca6SJunchao Zhang 2292dd5b3ca6SJunchao Zhang PetscFunctionBegin; 2293dd5b3ca6SJunchao Zhang PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 22949566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 22959566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(PETSCSF_BcastBegin, sf, 0, 0, 0)); 22969566063dSJacob Faibussowitsch PetscCall(PetscGetMemType(rootdata, &rootmtype)); 22979566063dSJacob Faibussowitsch PetscCall(PetscGetMemType(leafdata, &leafmtype)); 2298dbbe0bcdSBarry Smith PetscUseTypeMethod(sf, BcastToZero, unit, rootmtype, rootdata, leafmtype, leafdata); 22999566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(PETSCSF_BcastBegin, sf, 0, 0, 0)); 23003ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2301dd5b3ca6SJunchao Zhang } 2302dd5b3ca6SJunchao Zhang 2303157edd7aSVaclav Hapla /*@ 2304cab54364SBarry Smith PetscSFConcatenate - concatenate multiple `PetscSF` into one 2305157edd7aSVaclav Hapla 2306157edd7aSVaclav Hapla Input Parameters: 2307157edd7aSVaclav Hapla + comm - the communicator 2308cab54364SBarry Smith . nsfs - the number of input `PetscSF` 2309cab54364SBarry Smith . sfs - the array of input `PetscSF` 23101f40158dSVaclav Hapla . rootMode - the root mode specifying how roots are handled 231120662ed9SBarry Smith - leafOffsets - the array of local leaf offsets, one for each input `PetscSF`, or `NULL` for contiguous storage 2312157edd7aSVaclav Hapla 23132fe279fdSBarry Smith Output Parameter: 2314cab54364SBarry Smith . newsf - The resulting `PetscSF` 2315157edd7aSVaclav Hapla 23161f40158dSVaclav Hapla Level: advanced 2317157edd7aSVaclav Hapla 2318157edd7aSVaclav Hapla Notes: 231920662ed9SBarry Smith The communicator of all `PetscSF`s in `sfs` must be comm. 2320157edd7aSVaclav Hapla 232120662ed9SBarry Smith Leaves are always concatenated locally, keeping them ordered by the input `PetscSF` index and original local order. 232220662ed9SBarry Smith 232320662ed9SBarry Smith The offsets in `leafOffsets` are added to the original leaf indices. 232420662ed9SBarry Smith 232520662ed9SBarry Smith If all input SFs use contiguous leaf storage (`ilocal` = `NULL`), `leafOffsets` can be passed as `NULL` as well. 232620662ed9SBarry Smith In this case, `NULL` is also passed as `ilocal` to the resulting `PetscSF`. 232720662ed9SBarry Smith 232820662ed9SBarry Smith If any input `PetscSF` has non-null `ilocal`, `leafOffsets` is needed to distinguish leaves from different input `PetscSF`s. 2329157edd7aSVaclav Hapla In this case, user is responsible to provide correct offsets so that the resulting leaves are unique (otherwise an error occurs). 2330157edd7aSVaclav Hapla 233120662ed9SBarry Smith All root modes retain the essential connectivity condition. 233220662ed9SBarry Smith If two leaves of the same input `PetscSF` are connected (sharing the same root), they are also connected in the output `PetscSF`. 233320662ed9SBarry Smith Parameter `rootMode` controls how the input root spaces are combined. 233420662ed9SBarry Smith For `PETSCSF_CONCATENATE_ROOTMODE_SHARED`, the root space is considered the same for each input `PetscSF` (checked in debug mode) 233520662ed9SBarry Smith and is also the same in the output `PetscSF`. 23361f40158dSVaclav Hapla For `PETSCSF_CONCATENATE_ROOTMODE_LOCAL` and `PETSCSF_CONCATENATE_ROOTMODE_GLOBAL`, the input root spaces are taken as separate and joined. 23371f40158dSVaclav Hapla `PETSCSF_CONCATENATE_ROOTMODE_LOCAL` joins the root spaces locally; 233820662ed9SBarry Smith roots of sfs[0], sfs[1], sfs[2], ... are joined on each rank separately, ordered by input `PetscSF` and original local index, and renumbered contiguously. 23391f40158dSVaclav Hapla `PETSCSF_CONCATENATE_ROOTMODE_GLOBAL` joins the root spaces globally; 23401593df67SStefano Zampini roots of sfs[0], sfs[1], sfs[2], ... are joined globally, ordered by input `PetscSF` index and original global index, and renumbered contiguously; 23411f40158dSVaclav Hapla the original root ranks are ignored. 23421f40158dSVaclav Hapla For both `PETSCSF_CONCATENATE_ROOTMODE_LOCAL` and `PETSCSF_CONCATENATE_ROOTMODE_GLOBAL`, 234320662ed9SBarry Smith the output `PetscSF`'s root layout is such that the local number of roots is a sum of the input `PetscSF`'s local numbers of roots on each rank 234420662ed9SBarry Smith to keep the load balancing. 234520662ed9SBarry Smith However, for `PETSCSF_CONCATENATE_ROOTMODE_GLOBAL`, roots can move to different ranks. 23461f40158dSVaclav Hapla 23471f40158dSVaclav Hapla Example: 23481f40158dSVaclav Hapla We can use src/vec/is/sf/tests/ex18.c to compare the root modes. By running 234920662ed9SBarry Smith .vb 235020662ed9SBarry Smith make -C $PETSC_DIR/src/vec/is/sf/tests ex18 235120662ed9SBarry Smith for m in {local,global,shared}; do 235220662ed9SBarry Smith mpirun -n 2 $PETSC_DIR/src/vec/is/sf/tests/ex18 -nsfs 2 -n 2 -root_mode $m -sf_view 235320662ed9SBarry Smith done 235420662ed9SBarry Smith .ve 235520662ed9SBarry Smith we generate two identical `PetscSF`s sf_0 and sf_1, 235620662ed9SBarry Smith .vb 235720662ed9SBarry Smith PetscSF Object: sf_0 2 MPI processes 235820662ed9SBarry Smith type: basic 235920662ed9SBarry Smith rank #leaves #roots 236020662ed9SBarry Smith [ 0] 4 2 236120662ed9SBarry Smith [ 1] 4 2 236220662ed9SBarry Smith leaves roots roots in global numbering 236320662ed9SBarry Smith ( 0, 0) <- ( 0, 0) = 0 236420662ed9SBarry Smith ( 0, 1) <- ( 0, 1) = 1 236520662ed9SBarry Smith ( 0, 2) <- ( 1, 0) = 2 236620662ed9SBarry Smith ( 0, 3) <- ( 1, 1) = 3 236720662ed9SBarry Smith ( 1, 0) <- ( 0, 0) = 0 236820662ed9SBarry Smith ( 1, 1) <- ( 0, 1) = 1 236920662ed9SBarry Smith ( 1, 2) <- ( 1, 0) = 2 237020662ed9SBarry Smith ( 1, 3) <- ( 1, 1) = 3 237120662ed9SBarry Smith .ve 2372e33f79d8SJacob Faibussowitsch and pass them to `PetscSFConcatenate()` along with different choices of `rootMode`, yielding different result_sf\: 237320662ed9SBarry Smith .vb 237420662ed9SBarry Smith rootMode = local: 237520662ed9SBarry Smith PetscSF Object: result_sf 2 MPI processes 237620662ed9SBarry Smith type: basic 237720662ed9SBarry Smith rank #leaves #roots 237820662ed9SBarry Smith [ 0] 8 4 237920662ed9SBarry Smith [ 1] 8 4 238020662ed9SBarry Smith leaves roots roots in global numbering 238120662ed9SBarry Smith ( 0, 0) <- ( 0, 0) = 0 238220662ed9SBarry Smith ( 0, 1) <- ( 0, 1) = 1 238320662ed9SBarry Smith ( 0, 2) <- ( 1, 0) = 4 238420662ed9SBarry Smith ( 0, 3) <- ( 1, 1) = 5 238520662ed9SBarry Smith ( 0, 4) <- ( 0, 2) = 2 238620662ed9SBarry Smith ( 0, 5) <- ( 0, 3) = 3 238720662ed9SBarry Smith ( 0, 6) <- ( 1, 2) = 6 238820662ed9SBarry Smith ( 0, 7) <- ( 1, 3) = 7 238920662ed9SBarry Smith ( 1, 0) <- ( 0, 0) = 0 239020662ed9SBarry Smith ( 1, 1) <- ( 0, 1) = 1 239120662ed9SBarry Smith ( 1, 2) <- ( 1, 0) = 4 239220662ed9SBarry Smith ( 1, 3) <- ( 1, 1) = 5 239320662ed9SBarry Smith ( 1, 4) <- ( 0, 2) = 2 239420662ed9SBarry Smith ( 1, 5) <- ( 0, 3) = 3 239520662ed9SBarry Smith ( 1, 6) <- ( 1, 2) = 6 239620662ed9SBarry Smith ( 1, 7) <- ( 1, 3) = 7 239720662ed9SBarry Smith 239820662ed9SBarry Smith rootMode = global: 239920662ed9SBarry Smith PetscSF Object: result_sf 2 MPI processes 240020662ed9SBarry Smith type: basic 240120662ed9SBarry Smith rank #leaves #roots 240220662ed9SBarry Smith [ 0] 8 4 240320662ed9SBarry Smith [ 1] 8 4 240420662ed9SBarry Smith leaves roots roots in global numbering 240520662ed9SBarry Smith ( 0, 0) <- ( 0, 0) = 0 240620662ed9SBarry Smith ( 0, 1) <- ( 0, 1) = 1 240720662ed9SBarry Smith ( 0, 2) <- ( 0, 2) = 2 240820662ed9SBarry Smith ( 0, 3) <- ( 0, 3) = 3 240920662ed9SBarry Smith ( 0, 4) <- ( 1, 0) = 4 241020662ed9SBarry Smith ( 0, 5) <- ( 1, 1) = 5 241120662ed9SBarry Smith ( 0, 6) <- ( 1, 2) = 6 241220662ed9SBarry Smith ( 0, 7) <- ( 1, 3) = 7 241320662ed9SBarry Smith ( 1, 0) <- ( 0, 0) = 0 241420662ed9SBarry Smith ( 1, 1) <- ( 0, 1) = 1 241520662ed9SBarry Smith ( 1, 2) <- ( 0, 2) = 2 241620662ed9SBarry Smith ( 1, 3) <- ( 0, 3) = 3 241720662ed9SBarry Smith ( 1, 4) <- ( 1, 0) = 4 241820662ed9SBarry Smith ( 1, 5) <- ( 1, 1) = 5 241920662ed9SBarry Smith ( 1, 6) <- ( 1, 2) = 6 242020662ed9SBarry Smith ( 1, 7) <- ( 1, 3) = 7 242120662ed9SBarry Smith 242220662ed9SBarry Smith rootMode = shared: 242320662ed9SBarry Smith PetscSF Object: result_sf 2 MPI processes 242420662ed9SBarry Smith type: basic 242520662ed9SBarry Smith rank #leaves #roots 242620662ed9SBarry Smith [ 0] 8 2 242720662ed9SBarry Smith [ 1] 8 2 242820662ed9SBarry Smith leaves roots roots in global numbering 242920662ed9SBarry Smith ( 0, 0) <- ( 0, 0) = 0 243020662ed9SBarry Smith ( 0, 1) <- ( 0, 1) = 1 243120662ed9SBarry Smith ( 0, 2) <- ( 1, 0) = 2 243220662ed9SBarry Smith ( 0, 3) <- ( 1, 1) = 3 243320662ed9SBarry Smith ( 0, 4) <- ( 0, 0) = 0 243420662ed9SBarry Smith ( 0, 5) <- ( 0, 1) = 1 243520662ed9SBarry Smith ( 0, 6) <- ( 1, 0) = 2 243620662ed9SBarry Smith ( 0, 7) <- ( 1, 1) = 3 243720662ed9SBarry Smith ( 1, 0) <- ( 0, 0) = 0 243820662ed9SBarry Smith ( 1, 1) <- ( 0, 1) = 1 243920662ed9SBarry Smith ( 1, 2) <- ( 1, 0) = 2 244020662ed9SBarry Smith ( 1, 3) <- ( 1, 1) = 3 244120662ed9SBarry Smith ( 1, 4) <- ( 0, 0) = 0 244220662ed9SBarry Smith ( 1, 5) <- ( 0, 1) = 1 244320662ed9SBarry Smith ( 1, 6) <- ( 1, 0) = 2 244420662ed9SBarry Smith ( 1, 7) <- ( 1, 1) = 3 244520662ed9SBarry Smith .ve 24461f40158dSVaclav Hapla 24471f40158dSVaclav Hapla .seealso: `PetscSF`, `PetscSFCompose()`, `PetscSFGetGraph()`, `PetscSFSetGraph()`, `PetscSFConcatenateRootMode` 2448157edd7aSVaclav Hapla @*/ 24491f40158dSVaclav Hapla PetscErrorCode PetscSFConcatenate(MPI_Comm comm, PetscInt nsfs, PetscSF sfs[], PetscSFConcatenateRootMode rootMode, PetscInt leafOffsets[], PetscSF *newsf) 2450d71ae5a4SJacob Faibussowitsch { 2451157edd7aSVaclav Hapla PetscInt i, s, nLeaves, nRoots; 2452157edd7aSVaclav Hapla PetscInt *leafArrayOffsets; 2453157edd7aSVaclav Hapla PetscInt *ilocal_new; 2454157edd7aSVaclav Hapla PetscSFNode *iremote_new; 2455157edd7aSVaclav Hapla PetscBool all_ilocal_null = PETSC_FALSE; 24561f40158dSVaclav Hapla PetscLayout glayout = NULL; 24571f40158dSVaclav Hapla PetscInt *gremote = NULL; 24581f40158dSVaclav Hapla PetscMPIInt rank, size; 2459157edd7aSVaclav Hapla 2460157edd7aSVaclav Hapla PetscFunctionBegin; 246112f479c1SVaclav Hapla if (PetscDefined(USE_DEBUG)) { 2462157edd7aSVaclav Hapla PetscSF dummy; /* just to have a PetscObject on comm for input validation */ 2463157edd7aSVaclav Hapla 24649566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &dummy)); 2465157edd7aSVaclav Hapla PetscValidLogicalCollectiveInt(dummy, nsfs, 2); 24664f572ea9SToby Isaac PetscAssertPointer(sfs, 3); 2467157edd7aSVaclav Hapla for (i = 0; i < nsfs; i++) { 2468157edd7aSVaclav Hapla PetscValidHeaderSpecific(sfs[i], PETSCSF_CLASSID, 3); 2469157edd7aSVaclav Hapla PetscCheckSameComm(dummy, 1, sfs[i], 3); 2470157edd7aSVaclav Hapla } 24711f40158dSVaclav Hapla PetscValidLogicalCollectiveEnum(dummy, rootMode, 4); 24724f572ea9SToby Isaac if (leafOffsets) PetscAssertPointer(leafOffsets, 5); 24734f572ea9SToby Isaac PetscAssertPointer(newsf, 6); 24749566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&dummy)); 2475157edd7aSVaclav Hapla } 2476157edd7aSVaclav Hapla if (!nsfs) { 24779566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, newsf)); 24789566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(*newsf, 0, 0, NULL, PETSC_OWN_POINTER, NULL, PETSC_OWN_POINTER)); 24793ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2480157edd7aSVaclav Hapla } 24819566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 24821f40158dSVaclav Hapla PetscCallMPI(MPI_Comm_size(comm, &size)); 2483157edd7aSVaclav Hapla 24841f40158dSVaclav Hapla /* Calculate leaf array offsets */ 24859566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nsfs + 1, &leafArrayOffsets)); 2486157edd7aSVaclav Hapla leafArrayOffsets[0] = 0; 2487157edd7aSVaclav Hapla for (s = 0; s < nsfs; s++) { 2488157edd7aSVaclav Hapla PetscInt nl; 2489157edd7aSVaclav Hapla 24909566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfs[s], NULL, &nl, NULL, NULL)); 2491157edd7aSVaclav Hapla leafArrayOffsets[s + 1] = leafArrayOffsets[s] + nl; 2492157edd7aSVaclav Hapla } 2493157edd7aSVaclav Hapla nLeaves = leafArrayOffsets[nsfs]; 2494157edd7aSVaclav Hapla 24951f40158dSVaclav Hapla /* Calculate number of roots */ 24961f40158dSVaclav Hapla switch (rootMode) { 24971f40158dSVaclav Hapla case PETSCSF_CONCATENATE_ROOTMODE_SHARED: { 24981f40158dSVaclav Hapla PetscCall(PetscSFGetGraph(sfs[0], &nRoots, NULL, NULL, NULL)); 24991f40158dSVaclav Hapla if (PetscDefined(USE_DEBUG)) { 25001f40158dSVaclav Hapla for (s = 1; s < nsfs; s++) { 25011f40158dSVaclav Hapla PetscInt nr; 25021f40158dSVaclav Hapla 25031f40158dSVaclav Hapla PetscCall(PetscSFGetGraph(sfs[s], &nr, NULL, NULL, NULL)); 25041f40158dSVaclav Hapla PetscCheck(nr == nRoots, comm, PETSC_ERR_ARG_SIZ, "rootMode = %s but sfs[%" PetscInt_FMT "] has a different number of roots (%" PetscInt_FMT ") than sfs[0] (%" PetscInt_FMT ")", PetscSFConcatenateRootModes[rootMode], s, nr, nRoots); 25051f40158dSVaclav Hapla } 25061f40158dSVaclav Hapla } 25071f40158dSVaclav Hapla } break; 25081f40158dSVaclav Hapla case PETSCSF_CONCATENATE_ROOTMODE_GLOBAL: { 25091f40158dSVaclav Hapla /* Calculate also global layout in this case */ 25101f40158dSVaclav Hapla PetscInt *nls; 25111f40158dSVaclav Hapla PetscLayout *lts; 25121f40158dSVaclav Hapla PetscInt **inds; 25131f40158dSVaclav Hapla PetscInt j; 25141f40158dSVaclav Hapla PetscInt rootOffset = 0; 25151f40158dSVaclav Hapla 25161f40158dSVaclav Hapla PetscCall(PetscCalloc3(nsfs, <s, nsfs, &nls, nsfs, &inds)); 25171f40158dSVaclav Hapla PetscCall(PetscLayoutCreate(comm, &glayout)); 25181f40158dSVaclav Hapla glayout->bs = 1; 25191f40158dSVaclav Hapla glayout->n = 0; 25201f40158dSVaclav Hapla glayout->N = 0; 25211f40158dSVaclav Hapla for (s = 0; s < nsfs; s++) { 25221f40158dSVaclav Hapla PetscCall(PetscSFGetGraphLayout(sfs[s], <s[s], &nls[s], NULL, &inds[s])); 25231f40158dSVaclav Hapla glayout->n += lts[s]->n; 25241f40158dSVaclav Hapla glayout->N += lts[s]->N; 25251f40158dSVaclav Hapla } 25261f40158dSVaclav Hapla PetscCall(PetscLayoutSetUp(glayout)); 25271f40158dSVaclav Hapla PetscCall(PetscMalloc1(nLeaves, &gremote)); 25281f40158dSVaclav Hapla for (s = 0, j = 0; s < nsfs; s++) { 25291f40158dSVaclav Hapla for (i = 0; i < nls[s]; i++, j++) gremote[j] = inds[s][i] + rootOffset; 25301f40158dSVaclav Hapla rootOffset += lts[s]->N; 25311f40158dSVaclav Hapla PetscCall(PetscLayoutDestroy(<s[s])); 25321f40158dSVaclav Hapla PetscCall(PetscFree(inds[s])); 25331f40158dSVaclav Hapla } 25341f40158dSVaclav Hapla PetscCall(PetscFree3(lts, nls, inds)); 25351f40158dSVaclav Hapla nRoots = glayout->N; 25361f40158dSVaclav Hapla } break; 25371f40158dSVaclav Hapla case PETSCSF_CONCATENATE_ROOTMODE_LOCAL: 25381f40158dSVaclav Hapla /* nRoots calculated later in this case */ 25391f40158dSVaclav Hapla break; 25401f40158dSVaclav Hapla default: 25411f40158dSVaclav Hapla SETERRQ(comm, PETSC_ERR_ARG_WRONG, "Invalid PetscSFConcatenateRootMode %d", rootMode); 25421f40158dSVaclav Hapla } 25431f40158dSVaclav Hapla 2544157edd7aSVaclav Hapla if (!leafOffsets) { 2545157edd7aSVaclav Hapla all_ilocal_null = PETSC_TRUE; 2546157edd7aSVaclav Hapla for (s = 0; s < nsfs; s++) { 2547157edd7aSVaclav Hapla const PetscInt *ilocal; 2548157edd7aSVaclav Hapla 25499566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfs[s], NULL, NULL, &ilocal, NULL)); 2550157edd7aSVaclav Hapla if (ilocal) { 2551157edd7aSVaclav Hapla all_ilocal_null = PETSC_FALSE; 2552157edd7aSVaclav Hapla break; 2553157edd7aSVaclav Hapla } 2554157edd7aSVaclav Hapla } 2555157edd7aSVaclav Hapla PetscCheck(all_ilocal_null, PETSC_COMM_SELF, PETSC_ERR_ARG_NULL, "leafOffsets can be passed as NULL only if all SFs have ilocal = NULL"); 2556157edd7aSVaclav Hapla } 2557157edd7aSVaclav Hapla 2558157edd7aSVaclav Hapla /* Renumber and concatenate local leaves */ 2559157edd7aSVaclav Hapla ilocal_new = NULL; 2560157edd7aSVaclav Hapla if (!all_ilocal_null) { 25619566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nLeaves, &ilocal_new)); 2562157edd7aSVaclav Hapla for (i = 0; i < nLeaves; i++) ilocal_new[i] = -1; 2563157edd7aSVaclav Hapla for (s = 0; s < nsfs; s++) { 2564157edd7aSVaclav Hapla const PetscInt *ilocal; 25658e3a54c0SPierre Jolivet PetscInt *ilocal_l = PetscSafePointerPlusOffset(ilocal_new, leafArrayOffsets[s]); 2566157edd7aSVaclav Hapla PetscInt i, nleaves_l; 2567157edd7aSVaclav Hapla 25689566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfs[s], NULL, &nleaves_l, &ilocal, NULL)); 2569157edd7aSVaclav Hapla for (i = 0; i < nleaves_l; i++) ilocal_l[i] = (ilocal ? ilocal[i] : i) + leafOffsets[s]; 2570157edd7aSVaclav Hapla } 2571157edd7aSVaclav Hapla } 2572157edd7aSVaclav Hapla 2573157edd7aSVaclav Hapla /* Renumber and concatenate remote roots */ 25741f40158dSVaclav Hapla if (rootMode == PETSCSF_CONCATENATE_ROOTMODE_LOCAL || rootMode == PETSCSF_CONCATENATE_ROOTMODE_SHARED) { 25751f40158dSVaclav Hapla PetscInt rootOffset = 0; 25761f40158dSVaclav Hapla 25779566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nLeaves, &iremote_new)); 2578157edd7aSVaclav Hapla for (i = 0; i < nLeaves; i++) { 2579157edd7aSVaclav Hapla iremote_new[i].rank = -1; 2580157edd7aSVaclav Hapla iremote_new[i].index = -1; 2581157edd7aSVaclav Hapla } 2582157edd7aSVaclav Hapla for (s = 0; s < nsfs; s++) { 2583157edd7aSVaclav Hapla PetscInt i, nl, nr; 2584157edd7aSVaclav Hapla PetscSF tmp_sf; 2585157edd7aSVaclav Hapla const PetscSFNode *iremote; 2586157edd7aSVaclav Hapla PetscSFNode *tmp_rootdata; 25878e3a54c0SPierre Jolivet PetscSFNode *tmp_leafdata = PetscSafePointerPlusOffset(iremote_new, leafArrayOffsets[s]); 2588157edd7aSVaclav Hapla 25899566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfs[s], &nr, &nl, NULL, &iremote)); 25909566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &tmp_sf)); 2591157edd7aSVaclav Hapla /* create helper SF with contiguous leaves */ 25929566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(tmp_sf, nr, nl, NULL, PETSC_USE_POINTER, (PetscSFNode *)iremote, PETSC_COPY_VALUES)); 25939566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(tmp_sf)); 25949566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nr, &tmp_rootdata)); 25951f40158dSVaclav Hapla if (rootMode == PETSCSF_CONCATENATE_ROOTMODE_LOCAL) { 2596157edd7aSVaclav Hapla for (i = 0; i < nr; i++) { 25971f40158dSVaclav Hapla tmp_rootdata[i].index = i + rootOffset; 25986497c311SBarry Smith tmp_rootdata[i].rank = rank; 2599157edd7aSVaclav Hapla } 26001f40158dSVaclav Hapla rootOffset += nr; 26011f40158dSVaclav Hapla } else { 26021f40158dSVaclav Hapla for (i = 0; i < nr; i++) { 26031f40158dSVaclav Hapla tmp_rootdata[i].index = i; 26046497c311SBarry Smith tmp_rootdata[i].rank = rank; 26051f40158dSVaclav Hapla } 26061f40158dSVaclav Hapla } 26076497c311SBarry Smith PetscCall(PetscSFBcastBegin(tmp_sf, MPIU_SF_NODE, tmp_rootdata, tmp_leafdata, MPI_REPLACE)); 26086497c311SBarry Smith PetscCall(PetscSFBcastEnd(tmp_sf, MPIU_SF_NODE, tmp_rootdata, tmp_leafdata, MPI_REPLACE)); 26099566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&tmp_sf)); 26109566063dSJacob Faibussowitsch PetscCall(PetscFree(tmp_rootdata)); 2611157edd7aSVaclav Hapla } 2612aa624791SPierre Jolivet if (rootMode == PETSCSF_CONCATENATE_ROOTMODE_LOCAL) nRoots = rootOffset; // else nRoots already calculated above 2613157edd7aSVaclav Hapla 2614157edd7aSVaclav Hapla /* Build the new SF */ 26159566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, newsf)); 26169566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(*newsf, nRoots, nLeaves, ilocal_new, PETSC_OWN_POINTER, iremote_new, PETSC_OWN_POINTER)); 26171f40158dSVaclav Hapla } else { 26181f40158dSVaclav Hapla /* Build the new SF */ 26191f40158dSVaclav Hapla PetscCall(PetscSFCreate(comm, newsf)); 26201f40158dSVaclav Hapla PetscCall(PetscSFSetGraphLayout(*newsf, glayout, nLeaves, ilocal_new, PETSC_OWN_POINTER, gremote)); 26211f40158dSVaclav Hapla } 26229566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(*newsf)); 26231f40158dSVaclav Hapla PetscCall(PetscSFViewFromOptions(*newsf, NULL, "-sf_concat_view")); 26241f40158dSVaclav Hapla PetscCall(PetscLayoutDestroy(&glayout)); 26251f40158dSVaclav Hapla PetscCall(PetscFree(gremote)); 26269566063dSJacob Faibussowitsch PetscCall(PetscFree(leafArrayOffsets)); 26273ba16761SJacob Faibussowitsch PetscFunctionReturn(PETSC_SUCCESS); 2628157edd7aSVaclav Hapla } 26298e54d7e8SToby Isaac 26308e54d7e8SToby Isaac /*@ 26318e54d7e8SToby Isaac PetscSFRegisterPersistent - Register root and leaf data as memory regions that will be used for repeated PetscSF communications. 26328e54d7e8SToby Isaac 26338e54d7e8SToby Isaac Collective 26348e54d7e8SToby Isaac 26358e54d7e8SToby Isaac Input Parameters: 26368e54d7e8SToby Isaac + sf - star forest 26378e54d7e8SToby Isaac . unit - the data type contained within the root and leaf data 2638d7c1f440SPierre Jolivet . rootdata - root data that will be used for multiple PetscSF communications 2639d7c1f440SPierre Jolivet - leafdata - leaf data that will be used for multiple PetscSF communications 26408e54d7e8SToby Isaac 26418e54d7e8SToby Isaac Level: advanced 26428e54d7e8SToby Isaac 26438e54d7e8SToby Isaac Notes: 26448e54d7e8SToby Isaac Implementations of `PetscSF` can make optimizations 26458e54d7e8SToby Isaac for repeated communication using the same memory regions, but these optimizations 26468e54d7e8SToby Isaac can be unsound if `rootdata` or `leafdata` is deallocated and the `PetscSF` is not informed. 26478e54d7e8SToby Isaac The intended pattern is 26488e54d7e8SToby Isaac 26498e54d7e8SToby Isaac .vb 26508e54d7e8SToby Isaac PetscMalloc2(nroots, &rootdata, nleaves, &leafdata); 26518e54d7e8SToby Isaac 26528e54d7e8SToby Isaac PetscSFRegisterPersistent(sf, unit, rootdata, leafdata); 26538e54d7e8SToby Isaac // repeated use of rootdata and leafdata will now be optimized 26548e54d7e8SToby Isaac 26558e54d7e8SToby Isaac PetscSFBcastBegin(sf, unit, rootdata, leafdata, MPI_REPLACE); 26568e54d7e8SToby Isaac PetscSFBcastEnd(sf, unit, rootdata, leafdata, MPI_REPLACE); 26578e54d7e8SToby Isaac // ... 26588e54d7e8SToby Isaac PetscSFReduceBegin(sf, unit, leafdata, rootdata, MPI_SUM); 26598e54d7e8SToby Isaac PetscSFReduceEnd(sf, unit, leafdata, rootdata, MPI_SUM); 26608e54d7e8SToby Isaac // ... (other communications) 26618e54d7e8SToby Isaac 26628e54d7e8SToby Isaac // rootdata and leafdata must be deregistered before freeing 26638e54d7e8SToby Isaac // skipping this can lead to undefined behavior including 26648e54d7e8SToby Isaac // deadlocks 26658e54d7e8SToby Isaac PetscSFDeregisterPersistent(sf, unit, rootdata, leafdata); 26668e54d7e8SToby Isaac 26678e54d7e8SToby Isaac // it is now safe to free rootdata and leafdata 26688e54d7e8SToby Isaac PetscFree2(rootdata, leafdata); 26698e54d7e8SToby Isaac .ve 26708e54d7e8SToby Isaac 26718e54d7e8SToby Isaac If you do not register `rootdata` and `leafdata` it will not cause an error, 26728e54d7e8SToby Isaac but optimizations that reduce the setup time for each communication cannot be 26738e54d7e8SToby Isaac made. Currently, the only implementation of `PetscSF` that benefits from 26748e54d7e8SToby Isaac `PetscSFRegisterPersistent()` is `PETSCSFWINDOW`. For the default 26758e54d7e8SToby Isaac `PETSCSFBASIC` there is no benefit to using `PetscSFRegisterPersistent()`. 26768e54d7e8SToby Isaac 26778e54d7e8SToby Isaac .seealso: `PetscSF`, `PETSCSFWINDOW`, `PetscSFDeregisterPersistent()` 26788e54d7e8SToby Isaac @*/ 26798e54d7e8SToby Isaac PetscErrorCode PetscSFRegisterPersistent(PetscSF sf, MPI_Datatype unit, const void *rootdata, const void *leafdata) 26808e54d7e8SToby Isaac { 26818e54d7e8SToby Isaac PetscFunctionBegin; 26828e54d7e8SToby Isaac PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 26838e54d7e8SToby Isaac PetscTryMethod(sf, "PetscSFRegisterPersistent_C", (PetscSF, MPI_Datatype, const void *, const void *), (sf, unit, rootdata, leafdata)); 26848e54d7e8SToby Isaac PetscFunctionReturn(PETSC_SUCCESS); 26858e54d7e8SToby Isaac } 26868e54d7e8SToby Isaac 26878e54d7e8SToby Isaac /*@ 26888e54d7e8SToby Isaac PetscSFDeregisterPersistent - Signal that repeated usage of root and leaf data for PetscSF communication has concluded. 26898e54d7e8SToby Isaac 26908e54d7e8SToby Isaac Collective 26918e54d7e8SToby Isaac 26928e54d7e8SToby Isaac Input Parameters: 26938e54d7e8SToby Isaac + sf - star forest 26948e54d7e8SToby Isaac . unit - the data type contained within the root and leaf data 26958e54d7e8SToby Isaac . rootdata - root data that was previously registered with `PetscSFRegisterPersistent()` 26968e54d7e8SToby Isaac - leafdata - leaf data that was previously registered with `PetscSFRegisterPersistent()` 26978e54d7e8SToby Isaac 26988e54d7e8SToby Isaac Level: advanced 26998e54d7e8SToby Isaac 27008e54d7e8SToby Isaac Note: 27018e54d7e8SToby Isaac See `PetscSFRegisterPersistent()` for when/how to use this function. 27028e54d7e8SToby Isaac 27038e54d7e8SToby Isaac .seealso: `PetscSF`, `PETSCSFWINDOW`, `PetscSFRegisterPersistent()` 27048e54d7e8SToby Isaac @*/ 27058e54d7e8SToby Isaac PetscErrorCode PetscSFDeregisterPersistent(PetscSF sf, MPI_Datatype unit, const void *rootdata, const void *leafdata) 27068e54d7e8SToby Isaac { 27078e54d7e8SToby Isaac PetscFunctionBegin; 27088e54d7e8SToby Isaac PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 27098e54d7e8SToby Isaac PetscTryMethod(sf, "PetscSFDeregisterPersistent_C", (PetscSF, MPI_Datatype, const void *, const void *), (sf, unit, rootdata, leafdata)); 27108e54d7e8SToby Isaac PetscFunctionReturn(PETSC_SUCCESS); 27118e54d7e8SToby Isaac } 2712e1187f0dSToby Isaac 2713e1187f0dSToby Isaac PETSC_INTERN PetscErrorCode PetscSFGetDatatypeSize_Internal(MPI_Comm comm, MPI_Datatype unit, MPI_Aint *size) 2714e1187f0dSToby Isaac { 2715e1187f0dSToby Isaac MPI_Aint lb, lb_true, bytes, bytes_true; 2716e1187f0dSToby Isaac 2717e1187f0dSToby Isaac PetscFunctionBegin; 2718e1187f0dSToby Isaac PetscCallMPI(MPI_Type_get_extent(unit, &lb, &bytes)); 2719e1187f0dSToby Isaac PetscCallMPI(MPI_Type_get_true_extent(unit, &lb_true, &bytes_true)); 2720e1187f0dSToby Isaac PetscCheck(lb == 0 && lb_true == 0, comm, PETSC_ERR_SUP, "No support for unit type with nonzero lower bound, write petsc-maint@mcs.anl.gov if you want this feature"); 2721e1187f0dSToby Isaac *size = bytes; 2722e1187f0dSToby Isaac PetscFunctionReturn(PETSC_SUCCESS); 2723e1187f0dSToby Isaac } 2724