1af0996ceSBarry Smith #include <petsc/private/sfimpl.h> /*I "petscsf.h" I*/ 295fce210SBarry Smith #include <petscctable.h> 395fce210SBarry Smith 495fce210SBarry Smith #if defined(PETSC_USE_DEBUG) 595fce210SBarry Smith # define PetscSFCheckGraphSet(sf,arg) do { \ 695fce210SBarry Smith if (PetscUnlikely(!(sf)->graphset)) \ 795fce210SBarry Smith SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Must call PetscSFSetGraph() on argument %D \"%s\" before %s()",(arg),#sf,PETSC_FUNCTION_NAME); \ 895fce210SBarry Smith } while (0) 995fce210SBarry Smith #else 1095fce210SBarry Smith # define PetscSFCheckGraphSet(sf,arg) do {} while (0) 1195fce210SBarry Smith #endif 1295fce210SBarry Smith 1395fce210SBarry Smith const char *const PetscSFDuplicateOptions[] = {"CONFONLY","RANKS","GRAPH","PetscSFDuplicateOption","PETSCSF_DUPLICATE_",0}; 1495fce210SBarry Smith 158af6ec1cSBarry Smith /*@ 1695fce210SBarry Smith PetscSFCreate - create a star forest communication context 1795fce210SBarry Smith 18*d083f849SBarry Smith Collective 1995fce210SBarry Smith 2095fce210SBarry Smith Input Arguments: 2195fce210SBarry Smith . comm - communicator on which the star forest will operate 2295fce210SBarry Smith 2395fce210SBarry Smith Output Arguments: 2495fce210SBarry Smith . sf - new star forest context 2595fce210SBarry Smith 2695fce210SBarry Smith Level: intermediate 2795fce210SBarry Smith 2895fce210SBarry Smith .seealso: PetscSFSetGraph(), PetscSFDestroy() 2995fce210SBarry Smith @*/ 3095fce210SBarry Smith PetscErrorCode PetscSFCreate(MPI_Comm comm,PetscSF *sf) 3195fce210SBarry Smith { 3295fce210SBarry Smith PetscErrorCode ierr; 3395fce210SBarry Smith PetscSF b; 3495fce210SBarry Smith 3595fce210SBarry Smith PetscFunctionBegin; 3695fce210SBarry Smith PetscValidPointer(sf,2); 37607a6623SBarry Smith ierr = PetscSFInitializePackage();CHKERRQ(ierr); 3895fce210SBarry Smith 3973107ff1SLisandro Dalcin ierr = PetscHeaderCreate(b,PETSCSF_CLASSID,"PetscSF","Star Forest","PetscSF",comm,PetscSFDestroy,PetscSFView);CHKERRQ(ierr); 4095fce210SBarry Smith 4195fce210SBarry Smith b->nroots = -1; 4295fce210SBarry Smith b->nleaves = -1; 4329046d53SLisandro Dalcin b->minleaf = PETSC_MAX_INT; 4429046d53SLisandro Dalcin b->maxleaf = PETSC_MIN_INT; 4595fce210SBarry Smith b->nranks = -1; 4695fce210SBarry Smith b->rankorder = PETSC_TRUE; 4795fce210SBarry Smith b->ingroup = MPI_GROUP_NULL; 4895fce210SBarry Smith b->outgroup = MPI_GROUP_NULL; 4995fce210SBarry Smith b->graphset = PETSC_FALSE; 5095fce210SBarry Smith 5195fce210SBarry Smith *sf = b; 5295fce210SBarry Smith PetscFunctionReturn(0); 5395fce210SBarry Smith } 5495fce210SBarry Smith 5529046d53SLisandro Dalcin /*@ 5695fce210SBarry Smith PetscSFReset - Reset a star forest so that different sizes or neighbors can be used 5795fce210SBarry Smith 5895fce210SBarry Smith Collective 5995fce210SBarry Smith 6095fce210SBarry Smith Input Arguments: 6195fce210SBarry Smith . sf - star forest 6295fce210SBarry Smith 6395fce210SBarry Smith Level: advanced 6495fce210SBarry Smith 6595fce210SBarry Smith .seealso: PetscSFCreate(), PetscSFSetGraph(), PetscSFDestroy() 6695fce210SBarry Smith @*/ 6795fce210SBarry Smith PetscErrorCode PetscSFReset(PetscSF sf) 6895fce210SBarry Smith { 6995fce210SBarry Smith PetscErrorCode ierr; 7095fce210SBarry Smith 7195fce210SBarry Smith PetscFunctionBegin; 7295fce210SBarry Smith PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 7379715d56SJed Brown if (sf->ops->Reset) {ierr = (*sf->ops->Reset)(sf);CHKERRQ(ierr);} 7429046d53SLisandro Dalcin sf->nroots = -1; 7529046d53SLisandro Dalcin sf->nleaves = -1; 7629046d53SLisandro Dalcin sf->minleaf = PETSC_MAX_INT; 7729046d53SLisandro Dalcin sf->maxleaf = PETSC_MIN_INT; 7895fce210SBarry Smith sf->mine = NULL; 7995fce210SBarry Smith sf->remote = NULL; 8029046d53SLisandro Dalcin sf->graphset = PETSC_FALSE; 8129046d53SLisandro Dalcin ierr = PetscFree(sf->mine_alloc);CHKERRQ(ierr); 8295fce210SBarry Smith ierr = PetscFree(sf->remote_alloc);CHKERRQ(ierr); 8321c688dcSJed Brown sf->nranks = -1; 8429046d53SLisandro Dalcin ierr = PetscFree4(sf->ranks,sf->roffset,sf->rmine,sf->rremote);CHKERRQ(ierr); 8529046d53SLisandro Dalcin sf->degreeknown = PETSC_FALSE; 8695fce210SBarry Smith ierr = PetscFree(sf->degree);CHKERRQ(ierr); 8795fce210SBarry Smith if (sf->ingroup != MPI_GROUP_NULL) {ierr = MPI_Group_free(&sf->ingroup);CHKERRQ(ierr);} 8895fce210SBarry Smith if (sf->outgroup != MPI_GROUP_NULL) {ierr = MPI_Group_free(&sf->outgroup);CHKERRQ(ierr);} 8995fce210SBarry Smith ierr = PetscSFDestroy(&sf->multi);CHKERRQ(ierr); 9095fce210SBarry Smith sf->setupcalled = PETSC_FALSE; 9195fce210SBarry Smith PetscFunctionReturn(0); 9295fce210SBarry Smith } 9395fce210SBarry Smith 9495fce210SBarry Smith /*@C 9529046d53SLisandro Dalcin PetscSFSetType - Set the PetscSF communication implementation 9695fce210SBarry Smith 9795fce210SBarry Smith Collective on PetscSF 9895fce210SBarry Smith 9995fce210SBarry Smith Input Parameters: 10095fce210SBarry Smith + sf - the PetscSF context 10195fce210SBarry Smith - type - a known method 10295fce210SBarry Smith 10395fce210SBarry Smith Options Database Key: 10495fce210SBarry Smith . -sf_type <type> - Sets the method; use -help for a list 10595fce210SBarry Smith of available methods (for instance, window, pt2pt, neighbor) 10695fce210SBarry Smith 10795fce210SBarry Smith Notes: 10895fce210SBarry Smith See "include/petscsf.h" for available methods (for instance) 10995fce210SBarry Smith + PETSCSFWINDOW - MPI-2/3 one-sided 11095fce210SBarry Smith - PETSCSFBASIC - basic implementation using MPI-1 two-sided 11195fce210SBarry Smith 11295fce210SBarry Smith Level: intermediate 11395fce210SBarry Smith 11495fce210SBarry Smith .seealso: PetscSFType, PetscSFCreate() 11595fce210SBarry Smith @*/ 11695fce210SBarry Smith PetscErrorCode PetscSFSetType(PetscSF sf,PetscSFType type) 11795fce210SBarry Smith { 11895fce210SBarry Smith PetscErrorCode ierr,(*r)(PetscSF); 11995fce210SBarry Smith PetscBool match; 12095fce210SBarry Smith 12195fce210SBarry Smith PetscFunctionBegin; 12295fce210SBarry Smith PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 12395fce210SBarry Smith PetscValidCharPointer(type,2); 12495fce210SBarry Smith 12595fce210SBarry Smith ierr = PetscObjectTypeCompare((PetscObject)sf,type,&match);CHKERRQ(ierr); 12695fce210SBarry Smith if (match) PetscFunctionReturn(0); 12795fce210SBarry Smith 128adc40e5bSBarry Smith ierr = PetscFunctionListFind(PetscSFList,type,&r);CHKERRQ(ierr); 12995fce210SBarry Smith if (!r) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_UNKNOWN_TYPE,"Unable to find requested PetscSF type %s",type); 13029046d53SLisandro Dalcin /* Destroy the previous PetscSF implementation context */ 13129046d53SLisandro Dalcin if (sf->ops->Destroy) {ierr = (*(sf)->ops->Destroy)(sf);CHKERRQ(ierr);} 13295fce210SBarry Smith ierr = PetscMemzero(sf->ops,sizeof(*sf->ops));CHKERRQ(ierr); 13395fce210SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)sf,type);CHKERRQ(ierr); 13495fce210SBarry Smith ierr = (*r)(sf);CHKERRQ(ierr); 13595fce210SBarry Smith PetscFunctionReturn(0); 13695fce210SBarry Smith } 13795fce210SBarry Smith 13829046d53SLisandro Dalcin /*@C 13929046d53SLisandro Dalcin PetscSFGetType - Get the PetscSF communication implementation 14029046d53SLisandro Dalcin 14129046d53SLisandro Dalcin Not Collective 14229046d53SLisandro Dalcin 14329046d53SLisandro Dalcin Input Parameter: 14429046d53SLisandro Dalcin . sf - the PetscSF context 14529046d53SLisandro Dalcin 14629046d53SLisandro Dalcin Output Parameter: 14729046d53SLisandro Dalcin . type - the PetscSF type name 14829046d53SLisandro Dalcin 14929046d53SLisandro Dalcin Level: intermediate 15029046d53SLisandro Dalcin 15129046d53SLisandro Dalcin .seealso: PetscSFSetType(), PetscSFCreate() 15229046d53SLisandro Dalcin @*/ 15329046d53SLisandro Dalcin PetscErrorCode PetscSFGetType(PetscSF sf, PetscSFType *type) 15429046d53SLisandro Dalcin { 15529046d53SLisandro Dalcin PetscFunctionBegin; 15629046d53SLisandro Dalcin PetscValidHeaderSpecific(sf, PETSCSF_CLASSID,1); 15729046d53SLisandro Dalcin PetscValidPointer(type,2); 15829046d53SLisandro Dalcin *type = ((PetscObject)sf)->type_name; 15929046d53SLisandro Dalcin PetscFunctionReturn(0); 16029046d53SLisandro Dalcin } 16129046d53SLisandro Dalcin 162d36d33e4SMatthew G. Knepley /*@ 16395fce210SBarry Smith PetscSFDestroy - destroy star forest 16495fce210SBarry Smith 16595fce210SBarry Smith Collective 16695fce210SBarry Smith 16795fce210SBarry Smith Input Arguments: 16895fce210SBarry Smith . sf - address of star forest 16995fce210SBarry Smith 17095fce210SBarry Smith Level: intermediate 17195fce210SBarry Smith 17295fce210SBarry Smith .seealso: PetscSFCreate(), PetscSFReset() 17395fce210SBarry Smith @*/ 17495fce210SBarry Smith PetscErrorCode PetscSFDestroy(PetscSF *sf) 17595fce210SBarry Smith { 17695fce210SBarry Smith PetscErrorCode ierr; 17795fce210SBarry Smith 17895fce210SBarry Smith PetscFunctionBegin; 17995fce210SBarry Smith if (!*sf) PetscFunctionReturn(0); 18095fce210SBarry Smith PetscValidHeaderSpecific((*sf),PETSCSF_CLASSID,1); 18129046d53SLisandro Dalcin if (--((PetscObject)(*sf))->refct > 0) {*sf = NULL; PetscFunctionReturn(0);} 18295fce210SBarry Smith ierr = PetscSFReset(*sf);CHKERRQ(ierr); 18395fce210SBarry Smith if ((*sf)->ops->Destroy) {ierr = (*(*sf)->ops->Destroy)(*sf);CHKERRQ(ierr);} 18495fce210SBarry Smith ierr = PetscHeaderDestroy(sf);CHKERRQ(ierr); 18595fce210SBarry Smith PetscFunctionReturn(0); 18695fce210SBarry Smith } 18795fce210SBarry Smith 18895fce210SBarry Smith /*@ 18995fce210SBarry Smith PetscSFSetUp - set up communication structures 19095fce210SBarry Smith 19195fce210SBarry Smith Collective 19295fce210SBarry Smith 19395fce210SBarry Smith Input Arguments: 19495fce210SBarry Smith . sf - star forest communication object 19595fce210SBarry Smith 19695fce210SBarry Smith Level: beginner 19795fce210SBarry Smith 19895fce210SBarry Smith .seealso: PetscSFSetFromOptions(), PetscSFSetType() 19995fce210SBarry Smith @*/ 20095fce210SBarry Smith PetscErrorCode PetscSFSetUp(PetscSF sf) 20195fce210SBarry Smith { 20295fce210SBarry Smith PetscErrorCode ierr; 20395fce210SBarry Smith 20495fce210SBarry Smith PetscFunctionBegin; 20529046d53SLisandro Dalcin PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 20629046d53SLisandro Dalcin PetscSFCheckGraphSet(sf,1); 20795fce210SBarry Smith if (sf->setupcalled) PetscFunctionReturn(0); 20895fce210SBarry Smith if (!((PetscObject)sf)->type_name) {ierr = PetscSFSetType(sf,PETSCSFBASIC);CHKERRQ(ierr);} 20929046d53SLisandro Dalcin ierr = PetscLogEventBegin(PETSCSF_SetUp,sf,0,0,0);CHKERRQ(ierr); 21095fce210SBarry Smith if (sf->ops->SetUp) {ierr = (*sf->ops->SetUp)(sf);CHKERRQ(ierr);} 21129046d53SLisandro Dalcin ierr = PetscLogEventEnd(PETSCSF_SetUp,sf,0,0,0);CHKERRQ(ierr); 21295fce210SBarry Smith sf->setupcalled = PETSC_TRUE; 21395fce210SBarry Smith PetscFunctionReturn(0); 21495fce210SBarry Smith } 21595fce210SBarry Smith 2168af6ec1cSBarry Smith /*@ 21795fce210SBarry Smith PetscSFSetFromOptions - set PetscSF options using the options database 21895fce210SBarry Smith 21995fce210SBarry Smith Logically Collective 22095fce210SBarry Smith 22195fce210SBarry Smith Input Arguments: 22295fce210SBarry Smith . sf - star forest 22395fce210SBarry Smith 22495fce210SBarry Smith Options Database Keys: 22560263706SJed Brown + -sf_type - implementation type, see PetscSFSetType() 22660263706SJed Brown - -sf_rank_order - sort composite points for gathers and scatters in rank order, gathers are non-deterministic otherwise 22795fce210SBarry Smith 22895fce210SBarry Smith Level: intermediate 22995fce210SBarry Smith 23095fce210SBarry Smith .seealso: PetscSFWindowSetSyncType() 23195fce210SBarry Smith @*/ 23295fce210SBarry Smith PetscErrorCode PetscSFSetFromOptions(PetscSF sf) 23395fce210SBarry Smith { 23495fce210SBarry Smith PetscSFType deft; 23595fce210SBarry Smith char type[256]; 23695fce210SBarry Smith PetscErrorCode ierr; 23795fce210SBarry Smith PetscBool flg; 23895fce210SBarry Smith 23995fce210SBarry Smith PetscFunctionBegin; 24095fce210SBarry Smith PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 24195fce210SBarry Smith ierr = PetscObjectOptionsBegin((PetscObject)sf);CHKERRQ(ierr); 24295fce210SBarry Smith deft = ((PetscObject)sf)->type_name ? ((PetscObject)sf)->type_name : PETSCSFBASIC; 24329046d53SLisandro Dalcin ierr = PetscOptionsFList("-sf_type","PetscSF implementation type","PetscSFSetType",PetscSFList,deft,type,sizeof(type),&flg);CHKERRQ(ierr); 24495fce210SBarry Smith ierr = PetscSFSetType(sf,flg ? type : deft);CHKERRQ(ierr); 24595fce210SBarry Smith ierr = PetscOptionsBool("-sf_rank_order","sort composite points for gathers and scatters in rank order, gathers are non-deterministic otherwise","PetscSFSetRankOrder",sf->rankorder,&sf->rankorder,NULL);CHKERRQ(ierr); 246e55864a3SBarry Smith if (sf->ops->SetFromOptions) {ierr = (*sf->ops->SetFromOptions)(PetscOptionsObject,sf);CHKERRQ(ierr);} 24795fce210SBarry Smith ierr = PetscOptionsEnd();CHKERRQ(ierr); 24895fce210SBarry Smith PetscFunctionReturn(0); 24995fce210SBarry Smith } 25095fce210SBarry Smith 25129046d53SLisandro Dalcin /*@ 25295fce210SBarry Smith PetscSFSetRankOrder - sort multi-points for gathers and scatters by rank order 25395fce210SBarry Smith 25495fce210SBarry Smith Logically Collective 25595fce210SBarry Smith 25695fce210SBarry Smith Input Arguments: 25795fce210SBarry Smith + sf - star forest 25895fce210SBarry Smith - flg - PETSC_TRUE to sort, PETSC_FALSE to skip sorting (lower setup cost, but non-deterministic) 25995fce210SBarry Smith 26095fce210SBarry Smith Level: advanced 26195fce210SBarry Smith 26295fce210SBarry Smith .seealso: PetscSFGatherBegin(), PetscSFScatterBegin() 26395fce210SBarry Smith @*/ 26495fce210SBarry Smith PetscErrorCode PetscSFSetRankOrder(PetscSF sf,PetscBool flg) 26595fce210SBarry Smith { 26695fce210SBarry Smith 26795fce210SBarry Smith PetscFunctionBegin; 26895fce210SBarry Smith PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 26995fce210SBarry Smith PetscValidLogicalCollectiveBool(sf,flg,2); 27095fce210SBarry Smith if (sf->multi) SETERRQ(PetscObjectComm((PetscObject)sf),PETSC_ERR_ARG_WRONGSTATE,"Rank ordering must be set before first call to PetscSFGatherBegin() or PetscSFScatterBegin()"); 27195fce210SBarry Smith sf->rankorder = flg; 27295fce210SBarry Smith PetscFunctionReturn(0); 27395fce210SBarry Smith } 27495fce210SBarry Smith 2758af6ec1cSBarry Smith /*@ 27695fce210SBarry Smith PetscSFSetGraph - Set a parallel star forest 27795fce210SBarry Smith 27895fce210SBarry Smith Collective 27995fce210SBarry Smith 28095fce210SBarry Smith Input Arguments: 28195fce210SBarry Smith + sf - star forest 28295fce210SBarry Smith . nroots - number of root vertices on the current process (these are possible targets for other process to attach leaves) 28395fce210SBarry Smith . nleaves - number of leaf vertices on the current process, each of these references a root on any process 28495fce210SBarry Smith . ilocal - locations of leaves in leafdata buffers, pass NULL for contiguous storage 28595fce210SBarry Smith . localmode - copy mode for ilocal 28695fce210SBarry Smith . iremote - remote locations of root vertices for each leaf on the current process 28795fce210SBarry Smith - remotemode - copy mode for iremote 28895fce210SBarry Smith 28995fce210SBarry Smith Level: intermediate 29095fce210SBarry Smith 29195452b02SPatrick Sanan Notes: 29295452b02SPatrick Sanan In Fortran you must use PETSC_COPY_VALUES for localmode and remotemode 29338ab3f8aSBarry Smith 2942ad1e87fSLisandro Dalcin Developers Note: Local indices which are the identity permutation in the range [0,nleaves) are discarded as they 2952ad1e87fSLisandro Dalcin encode contiguous storage. In such case, if localmode is PETSC_OWN_POINTER, the memory is deallocated as it is not 2962ad1e87fSLisandro Dalcin needed 2972ad1e87fSLisandro Dalcin 29895fce210SBarry Smith .seealso: PetscSFCreate(), PetscSFView(), PetscSFGetGraph() 29995fce210SBarry Smith @*/ 30095fce210SBarry Smith PetscErrorCode PetscSFSetGraph(PetscSF sf,PetscInt nroots,PetscInt nleaves,const PetscInt *ilocal,PetscCopyMode localmode,const PetscSFNode *iremote,PetscCopyMode remotemode) 30195fce210SBarry Smith { 30295fce210SBarry Smith PetscErrorCode ierr; 30395fce210SBarry Smith 30495fce210SBarry Smith PetscFunctionBegin; 30595fce210SBarry Smith PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 30629046d53SLisandro Dalcin if (nleaves > 0 && ilocal) PetscValidIntPointer(ilocal,4); 30729046d53SLisandro Dalcin if (nleaves > 0) PetscValidPointer(iremote,6); 30829046d53SLisandro Dalcin if (nroots < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"nroots %D, cannot be negative",nroots); 30995fce210SBarry Smith if (nleaves < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"nleaves %D, cannot be negative",nleaves); 31029046d53SLisandro Dalcin 31195fce210SBarry Smith ierr = PetscSFReset(sf);CHKERRQ(ierr); 31229046d53SLisandro Dalcin ierr = PetscLogEventBegin(PETSCSF_SetGraph,sf,0,0,0);CHKERRQ(ierr); 31329046d53SLisandro Dalcin 31495fce210SBarry Smith sf->nroots = nroots; 31595fce210SBarry Smith sf->nleaves = nleaves; 31629046d53SLisandro Dalcin 31729046d53SLisandro Dalcin if (nleaves && ilocal) { 31821c688dcSJed Brown PetscInt i; 31929046d53SLisandro Dalcin PetscInt minleaf = PETSC_MAX_INT; 32029046d53SLisandro Dalcin PetscInt maxleaf = PETSC_MIN_INT; 3212ad1e87fSLisandro Dalcin int contiguous = 1; 32229046d53SLisandro Dalcin for (i=0; i<nleaves; i++) { 32329046d53SLisandro Dalcin minleaf = PetscMin(minleaf,ilocal[i]); 32429046d53SLisandro Dalcin maxleaf = PetscMax(maxleaf,ilocal[i]); 3252ad1e87fSLisandro Dalcin contiguous &= (ilocal[i] == i); 32629046d53SLisandro Dalcin } 32729046d53SLisandro Dalcin sf->minleaf = minleaf; 32829046d53SLisandro Dalcin sf->maxleaf = maxleaf; 3292ad1e87fSLisandro Dalcin if (contiguous) { 3302ad1e87fSLisandro Dalcin if (localmode == PETSC_OWN_POINTER) { 3312ad1e87fSLisandro Dalcin ierr = PetscFree(ilocal);CHKERRQ(ierr); 3322ad1e87fSLisandro Dalcin } 3332ad1e87fSLisandro Dalcin ilocal = NULL; 3342ad1e87fSLisandro Dalcin } 33529046d53SLisandro Dalcin } else { 33629046d53SLisandro Dalcin sf->minleaf = 0; 33729046d53SLisandro Dalcin sf->maxleaf = nleaves - 1; 33829046d53SLisandro Dalcin } 33929046d53SLisandro Dalcin 34029046d53SLisandro Dalcin if (ilocal) { 34195fce210SBarry Smith switch (localmode) { 34295fce210SBarry Smith case PETSC_COPY_VALUES: 343785e854fSJed Brown ierr = PetscMalloc1(nleaves,&sf->mine_alloc);CHKERRQ(ierr); 34429046d53SLisandro Dalcin ierr = PetscMemcpy(sf->mine_alloc,ilocal,nleaves*sizeof(*ilocal));CHKERRQ(ierr); 34595fce210SBarry Smith sf->mine = sf->mine_alloc; 34695fce210SBarry Smith break; 34795fce210SBarry Smith case PETSC_OWN_POINTER: 34895fce210SBarry Smith sf->mine_alloc = (PetscInt*)ilocal; 34995fce210SBarry Smith sf->mine = sf->mine_alloc; 35095fce210SBarry Smith break; 35195fce210SBarry Smith case PETSC_USE_POINTER: 35229046d53SLisandro Dalcin sf->mine_alloc = NULL; 35395fce210SBarry Smith sf->mine = (PetscInt*)ilocal; 35495fce210SBarry Smith break; 35595fce210SBarry Smith default: SETERRQ(PetscObjectComm((PetscObject)sf),PETSC_ERR_ARG_OUTOFRANGE,"Unknown localmode"); 35695fce210SBarry Smith } 35795fce210SBarry Smith } 35829046d53SLisandro Dalcin 35995fce210SBarry Smith switch (remotemode) { 36095fce210SBarry Smith case PETSC_COPY_VALUES: 361785e854fSJed Brown ierr = PetscMalloc1(nleaves,&sf->remote_alloc);CHKERRQ(ierr); 36229046d53SLisandro Dalcin ierr = PetscMemcpy(sf->remote_alloc,iremote,nleaves*sizeof(*iremote));CHKERRQ(ierr); 36395fce210SBarry Smith sf->remote = sf->remote_alloc; 36495fce210SBarry Smith break; 36595fce210SBarry Smith case PETSC_OWN_POINTER: 36695fce210SBarry Smith sf->remote_alloc = (PetscSFNode*)iremote; 36795fce210SBarry Smith sf->remote = sf->remote_alloc; 36895fce210SBarry Smith break; 36995fce210SBarry Smith case PETSC_USE_POINTER: 37029046d53SLisandro Dalcin sf->remote_alloc = NULL; 37195fce210SBarry Smith sf->remote = (PetscSFNode*)iremote; 37295fce210SBarry Smith break; 37395fce210SBarry Smith default: SETERRQ(PetscObjectComm((PetscObject)sf),PETSC_ERR_ARG_OUTOFRANGE,"Unknown remotemode"); 37495fce210SBarry Smith } 37595fce210SBarry Smith 376563ffbabSMatthew G. Knepley ierr = PetscLogEventEnd(PETSCSF_SetGraph,sf,0,0,0);CHKERRQ(ierr); 37729046d53SLisandro Dalcin sf->graphset = PETSC_TRUE; 37895fce210SBarry Smith PetscFunctionReturn(0); 37995fce210SBarry Smith } 38095fce210SBarry Smith 38129046d53SLisandro Dalcin /*@ 38295fce210SBarry Smith PetscSFCreateInverseSF - given a PetscSF in which all vertices have degree 1, creates the inverse map 38395fce210SBarry Smith 38495fce210SBarry Smith Collective 38595fce210SBarry Smith 38695fce210SBarry Smith Input Arguments: 38795fce210SBarry Smith . sf - star forest to invert 38895fce210SBarry Smith 38995fce210SBarry Smith Output Arguments: 39095fce210SBarry Smith . isf - inverse of sf 39195fce210SBarry Smith 39295fce210SBarry Smith Level: advanced 39395fce210SBarry Smith 39495fce210SBarry Smith Notes: 39595fce210SBarry Smith All roots must have degree 1. 39695fce210SBarry Smith 39795fce210SBarry Smith The local space may be a permutation, but cannot be sparse. 39895fce210SBarry Smith 39995fce210SBarry Smith .seealso: PetscSFSetGraph() 40095fce210SBarry Smith @*/ 40195fce210SBarry Smith PetscErrorCode PetscSFCreateInverseSF(PetscSF sf,PetscSF *isf) 40295fce210SBarry Smith { 40395fce210SBarry Smith PetscErrorCode ierr; 40495fce210SBarry Smith PetscMPIInt rank; 40595fce210SBarry Smith PetscInt i,nroots,nleaves,maxlocal,count,*newilocal; 40695fce210SBarry Smith const PetscInt *ilocal; 40795fce210SBarry Smith PetscSFNode *roots,*leaves; 40895fce210SBarry Smith 40995fce210SBarry Smith PetscFunctionBegin; 41029046d53SLisandro Dalcin PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 41129046d53SLisandro Dalcin PetscSFCheckGraphSet(sf,1); 41229046d53SLisandro Dalcin PetscValidPointer(isf,2); 41329046d53SLisandro Dalcin 41495fce210SBarry Smith ierr = PetscSFGetGraph(sf,&nroots,&nleaves,&ilocal,NULL);CHKERRQ(ierr); 41529046d53SLisandro Dalcin maxlocal = sf->maxleaf+1; /* TODO: We should use PetscSFGetLeafRange() */ 41629046d53SLisandro Dalcin 41729046d53SLisandro Dalcin ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)sf),&rank);CHKERRQ(ierr); 418ae9aee6dSMatthew G. Knepley ierr = PetscMalloc2(nroots,&roots,maxlocal,&leaves);CHKERRQ(ierr); 419ae9aee6dSMatthew G. Knepley for (i=0; i<maxlocal; i++) { 42095fce210SBarry Smith leaves[i].rank = rank; 42195fce210SBarry Smith leaves[i].index = i; 42295fce210SBarry Smith } 42395fce210SBarry Smith for (i=0; i <nroots; i++) { 42495fce210SBarry Smith roots[i].rank = -1; 42595fce210SBarry Smith roots[i].index = -1; 42695fce210SBarry Smith } 4278bfbc91cSJed Brown ierr = PetscSFReduceBegin(sf,MPIU_2INT,leaves,roots,MPIU_REPLACE);CHKERRQ(ierr); 4288bfbc91cSJed Brown ierr = PetscSFReduceEnd(sf,MPIU_2INT,leaves,roots,MPIU_REPLACE);CHKERRQ(ierr); 42995fce210SBarry Smith 43095fce210SBarry Smith /* Check whether our leaves are sparse */ 43195fce210SBarry Smith for (i=0,count=0; i<nroots; i++) if (roots[i].rank >= 0) count++; 43295fce210SBarry Smith if (count == nroots) newilocal = NULL; 43395fce210SBarry Smith else { /* Index for sparse leaves and compact "roots" array (which is to become our leaves). */ 434785e854fSJed Brown ierr = PetscMalloc1(count,&newilocal);CHKERRQ(ierr); 43595fce210SBarry Smith for (i=0,count=0; i<nroots; i++) { 43695fce210SBarry Smith if (roots[i].rank >= 0) { 43795fce210SBarry Smith newilocal[count] = i; 43895fce210SBarry Smith roots[count].rank = roots[i].rank; 43995fce210SBarry Smith roots[count].index = roots[i].index; 44095fce210SBarry Smith count++; 44195fce210SBarry Smith } 44295fce210SBarry Smith } 44395fce210SBarry Smith } 44495fce210SBarry Smith 44595fce210SBarry Smith ierr = PetscSFDuplicate(sf,PETSCSF_DUPLICATE_CONFONLY,isf);CHKERRQ(ierr); 44695fce210SBarry Smith ierr = PetscSFSetGraph(*isf,maxlocal,count,newilocal,PETSC_OWN_POINTER,roots,PETSC_COPY_VALUES);CHKERRQ(ierr); 44795fce210SBarry Smith ierr = PetscFree2(roots,leaves);CHKERRQ(ierr); 44895fce210SBarry Smith PetscFunctionReturn(0); 44995fce210SBarry Smith } 45095fce210SBarry Smith 45195fce210SBarry Smith /*@ 45295fce210SBarry Smith PetscSFDuplicate - duplicate a PetscSF, optionally preserving rank connectivity and graph 45395fce210SBarry Smith 45495fce210SBarry Smith Collective 45595fce210SBarry Smith 45695fce210SBarry Smith Input Arguments: 45795fce210SBarry Smith + sf - communication object to duplicate 45895fce210SBarry Smith - opt - PETSCSF_DUPLICATE_CONFONLY, PETSCSF_DUPLICATE_RANKS, or PETSCSF_DUPLICATE_GRAPH (see PetscSFDuplicateOption) 45995fce210SBarry Smith 46095fce210SBarry Smith Output Arguments: 46195fce210SBarry Smith . newsf - new communication object 46295fce210SBarry Smith 46395fce210SBarry Smith Level: beginner 46495fce210SBarry Smith 46595fce210SBarry Smith .seealso: PetscSFCreate(), PetscSFSetType(), PetscSFSetGraph() 46695fce210SBarry Smith @*/ 46795fce210SBarry Smith PetscErrorCode PetscSFDuplicate(PetscSF sf,PetscSFDuplicateOption opt,PetscSF *newsf) 46895fce210SBarry Smith { 46929046d53SLisandro Dalcin PetscSFType type; 47095fce210SBarry Smith PetscErrorCode ierr; 47195fce210SBarry Smith 47295fce210SBarry Smith PetscFunctionBegin; 47329046d53SLisandro Dalcin PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 47429046d53SLisandro Dalcin PetscValidLogicalCollectiveEnum(sf,opt,2); 47529046d53SLisandro Dalcin PetscValidPointer(newsf,3); 47695fce210SBarry Smith ierr = PetscSFCreate(PetscObjectComm((PetscObject)sf),newsf);CHKERRQ(ierr); 47729046d53SLisandro Dalcin ierr = PetscSFGetType(sf,&type);CHKERRQ(ierr); 47829046d53SLisandro Dalcin if (type) {ierr = PetscSFSetType(*newsf,type);CHKERRQ(ierr);} 47995fce210SBarry Smith if (opt == PETSCSF_DUPLICATE_GRAPH) { 48095fce210SBarry Smith PetscInt nroots,nleaves; 48195fce210SBarry Smith const PetscInt *ilocal; 48295fce210SBarry Smith const PetscSFNode *iremote; 48329046d53SLisandro Dalcin PetscSFCheckGraphSet(sf,1); 48495fce210SBarry Smith ierr = PetscSFGetGraph(sf,&nroots,&nleaves,&ilocal,&iremote);CHKERRQ(ierr); 48595fce210SBarry Smith ierr = PetscSFSetGraph(*newsf,nroots,nleaves,ilocal,PETSC_COPY_VALUES,iremote,PETSC_COPY_VALUES);CHKERRQ(ierr); 48695fce210SBarry Smith } 48729046d53SLisandro Dalcin if (sf->ops->Duplicate) {ierr = (*sf->ops->Duplicate)(sf,opt,*newsf);CHKERRQ(ierr);} 48895fce210SBarry Smith PetscFunctionReturn(0); 48995fce210SBarry Smith } 49095fce210SBarry Smith 49195fce210SBarry Smith /*@C 49295fce210SBarry Smith PetscSFGetGraph - Get the graph specifying a parallel star forest 49395fce210SBarry Smith 49495fce210SBarry Smith Not Collective 49595fce210SBarry Smith 49695fce210SBarry Smith Input Arguments: 49795fce210SBarry Smith . sf - star forest 49895fce210SBarry Smith 49995fce210SBarry Smith Output Arguments: 50095fce210SBarry Smith + nroots - number of root vertices on the current process (these are possible targets for other process to attach leaves) 50195fce210SBarry Smith . nleaves - number of leaf vertices on the current process, each of these references a root on any process 50295fce210SBarry Smith . ilocal - locations of leaves in leafdata buffers 50395fce210SBarry Smith - iremote - remote locations of root vertices for each leaf on the current process 50495fce210SBarry Smith 505373e0d91SLisandro Dalcin Notes: 506373e0d91SLisandro Dalcin We are not currently requiring that the graph is set, thus returning nroots=-1 if it has not been set yet 507373e0d91SLisandro Dalcin 50895fce210SBarry Smith Level: intermediate 50995fce210SBarry Smith 51095fce210SBarry Smith .seealso: PetscSFCreate(), PetscSFView(), PetscSFSetGraph() 51195fce210SBarry Smith @*/ 51295fce210SBarry Smith PetscErrorCode PetscSFGetGraph(PetscSF sf,PetscInt *nroots,PetscInt *nleaves,const PetscInt **ilocal,const PetscSFNode **iremote) 51395fce210SBarry Smith { 51495fce210SBarry Smith 51595fce210SBarry Smith PetscFunctionBegin; 51695fce210SBarry Smith PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 51795fce210SBarry Smith if (nroots) *nroots = sf->nroots; 51895fce210SBarry Smith if (nleaves) *nleaves = sf->nleaves; 51995fce210SBarry Smith if (ilocal) *ilocal = sf->mine; 52095fce210SBarry Smith if (iremote) *iremote = sf->remote; 52195fce210SBarry Smith PetscFunctionReturn(0); 52295fce210SBarry Smith } 52395fce210SBarry Smith 52429046d53SLisandro Dalcin /*@ 52595fce210SBarry Smith PetscSFGetLeafRange - Get the active leaf ranges 52695fce210SBarry Smith 52795fce210SBarry Smith Not Collective 52895fce210SBarry Smith 52995fce210SBarry Smith Input Arguments: 53095fce210SBarry Smith . sf - star forest 53195fce210SBarry Smith 53295fce210SBarry Smith Output Arguments: 53395fce210SBarry Smith + minleaf - minimum active leaf on this process 53495fce210SBarry Smith - maxleaf - maximum active leaf on this process 53595fce210SBarry Smith 53695fce210SBarry Smith Level: developer 53795fce210SBarry Smith 53895fce210SBarry Smith .seealso: PetscSFCreate(), PetscSFView(), PetscSFSetGraph(), PetscSFGetGraph() 53995fce210SBarry Smith @*/ 54095fce210SBarry Smith PetscErrorCode PetscSFGetLeafRange(PetscSF sf,PetscInt *minleaf,PetscInt *maxleaf) 54195fce210SBarry Smith { 54295fce210SBarry Smith 54395fce210SBarry Smith PetscFunctionBegin; 54495fce210SBarry Smith PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 54529046d53SLisandro Dalcin PetscSFCheckGraphSet(sf,1); 54695fce210SBarry Smith if (minleaf) *minleaf = sf->minleaf; 54795fce210SBarry Smith if (maxleaf) *maxleaf = sf->maxleaf; 54895fce210SBarry Smith PetscFunctionReturn(0); 54995fce210SBarry Smith } 55095fce210SBarry Smith 55195fce210SBarry Smith /*@C 55295fce210SBarry Smith PetscSFView - view a star forest 55395fce210SBarry Smith 55495fce210SBarry Smith Collective 55595fce210SBarry Smith 55695fce210SBarry Smith Input Arguments: 55795fce210SBarry Smith + sf - star forest 55895fce210SBarry Smith - viewer - viewer to display graph, for example PETSC_VIEWER_STDOUT_WORLD 55995fce210SBarry Smith 56095fce210SBarry Smith Level: beginner 56195fce210SBarry Smith 56295fce210SBarry Smith .seealso: PetscSFCreate(), PetscSFSetGraph() 56395fce210SBarry Smith @*/ 56495fce210SBarry Smith PetscErrorCode PetscSFView(PetscSF sf,PetscViewer viewer) 56595fce210SBarry Smith { 56695fce210SBarry Smith PetscErrorCode ierr; 56795fce210SBarry Smith PetscBool iascii; 56895fce210SBarry Smith PetscViewerFormat format; 56995fce210SBarry Smith 57095fce210SBarry Smith PetscFunctionBegin; 57195fce210SBarry Smith PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 57295fce210SBarry Smith if (!viewer) {ierr = PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject)sf),&viewer);CHKERRQ(ierr);} 57395fce210SBarry Smith PetscValidHeaderSpecific(viewer,PETSC_VIEWER_CLASSID,2); 57495fce210SBarry Smith PetscCheckSameComm(sf,1,viewer,2); 57580153354SVaclav Hapla if (sf->graphset) {ierr = PetscSFSetUp(sf);CHKERRQ(ierr);} 57695fce210SBarry Smith ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 57795fce210SBarry Smith if (iascii) { 57895fce210SBarry Smith PetscMPIInt rank; 57981bfa7aaSJed Brown PetscInt ii,i,j; 58095fce210SBarry Smith 581dae58748SBarry Smith ierr = PetscObjectPrintClassNamePrefixType((PetscObject)sf,viewer);CHKERRQ(ierr); 58295fce210SBarry Smith ierr = PetscViewerASCIIPushTab(viewer);CHKERRQ(ierr); 58395fce210SBarry Smith if (sf->ops->View) {ierr = (*sf->ops->View)(sf,viewer);CHKERRQ(ierr);} 58480153354SVaclav Hapla if (!sf->graphset) { 58580153354SVaclav Hapla ierr = PetscViewerASCIIPrintf(viewer,"PetscSFSetGraph() has not been called yet\n");CHKERRQ(ierr); 58680153354SVaclav Hapla ierr = PetscViewerASCIIPopTab(viewer);CHKERRQ(ierr); 58780153354SVaclav Hapla PetscFunctionReturn(0); 58880153354SVaclav Hapla } 58995fce210SBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)sf),&rank);CHKERRQ(ierr); 5901575c14dSBarry Smith ierr = PetscViewerASCIIPushSynchronized(viewer);CHKERRQ(ierr); 59195fce210SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Number of roots=%D, leaves=%D, remote ranks=%D\n",rank,sf->nroots,sf->nleaves,sf->nranks);CHKERRQ(ierr); 59295fce210SBarry Smith for (i=0; i<sf->nleaves; i++) { 59395fce210SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] %D <- (%D,%D)\n",rank,sf->mine ? sf->mine[i] : i,sf->remote[i].rank,sf->remote[i].index);CHKERRQ(ierr); 59495fce210SBarry Smith } 59595fce210SBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 59695fce210SBarry Smith ierr = PetscViewerGetFormat(viewer,&format);CHKERRQ(ierr); 59795fce210SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 59881bfa7aaSJed Brown PetscMPIInt *tmpranks,*perm; 59981bfa7aaSJed Brown ierr = PetscMalloc2(sf->nranks,&tmpranks,sf->nranks,&perm);CHKERRQ(ierr); 60081bfa7aaSJed Brown ierr = PetscMemcpy(tmpranks,sf->ranks,sf->nranks*sizeof(tmpranks[0]));CHKERRQ(ierr); 60181bfa7aaSJed Brown for (i=0; i<sf->nranks; i++) perm[i] = i; 60281bfa7aaSJed Brown ierr = PetscSortMPIIntWithArray(sf->nranks,tmpranks,perm);CHKERRQ(ierr); 60395fce210SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] Roots referenced by my leaves, by rank\n",rank);CHKERRQ(ierr); 60481bfa7aaSJed Brown for (ii=0; ii<sf->nranks; ii++) { 60581bfa7aaSJed Brown i = perm[ii]; 6067904a332SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] %d: %D edges\n",rank,sf->ranks[i],sf->roffset[i+1]-sf->roffset[i]);CHKERRQ(ierr); 60795fce210SBarry Smith for (j=sf->roffset[i]; j<sf->roffset[i+1]; j++) { 60895fce210SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] %D <- %D\n",rank,sf->rmine[j],sf->rremote[j]);CHKERRQ(ierr); 60995fce210SBarry Smith } 61095fce210SBarry Smith } 61181bfa7aaSJed Brown ierr = PetscFree2(tmpranks,perm);CHKERRQ(ierr); 61295fce210SBarry Smith } 61395fce210SBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 6141575c14dSBarry Smith ierr = PetscViewerASCIIPopSynchronized(viewer);CHKERRQ(ierr); 61595fce210SBarry Smith ierr = PetscViewerASCIIPopTab(viewer);CHKERRQ(ierr); 61695fce210SBarry Smith } 61795fce210SBarry Smith PetscFunctionReturn(0); 61895fce210SBarry Smith } 61995fce210SBarry Smith 62095fce210SBarry Smith /*@C 62195fce210SBarry Smith PetscSFGetRanks - Get ranks and number of vertices referenced by leaves on this process 62295fce210SBarry Smith 62395fce210SBarry Smith Not Collective 62495fce210SBarry Smith 62595fce210SBarry Smith Input Arguments: 62695fce210SBarry Smith . sf - star forest 62795fce210SBarry Smith 62895fce210SBarry Smith Output Arguments: 62995fce210SBarry Smith + nranks - number of ranks referenced by local part 63095fce210SBarry Smith . ranks - array of ranks 63195fce210SBarry Smith . roffset - offset in rmine/rremote for each rank (length nranks+1) 63295fce210SBarry Smith . rmine - concatenated array holding local indices referencing each remote rank 63395fce210SBarry Smith - rremote - concatenated array holding remote indices referenced for each remote rank 63495fce210SBarry Smith 63595fce210SBarry Smith Level: developer 63695fce210SBarry Smith 63795fce210SBarry Smith .seealso: PetscSFSetGraph() 63895fce210SBarry Smith @*/ 63995fce210SBarry Smith PetscErrorCode PetscSFGetRanks(PetscSF sf,PetscInt *nranks,const PetscMPIInt **ranks,const PetscInt **roffset,const PetscInt **rmine,const PetscInt **rremote) 64095fce210SBarry Smith { 64195fce210SBarry Smith 64295fce210SBarry Smith PetscFunctionBegin; 64395fce210SBarry Smith PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 64429046d53SLisandro Dalcin if (!sf->setupcalled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Must call PetscSFSetUp() before obtaining ranks"); 64595fce210SBarry Smith if (nranks) *nranks = sf->nranks; 64695fce210SBarry Smith if (ranks) *ranks = sf->ranks; 64795fce210SBarry Smith if (roffset) *roffset = sf->roffset; 64895fce210SBarry Smith if (rmine) *rmine = sf->rmine; 64995fce210SBarry Smith if (rremote) *rremote = sf->rremote; 65095fce210SBarry Smith PetscFunctionReturn(0); 65195fce210SBarry Smith } 65295fce210SBarry Smith 6538750ddebSJunchao Zhang /*@C 6548750ddebSJunchao Zhang PetscSFGetLeafRanks - Get leaf ranks referencing roots on this process 6558750ddebSJunchao Zhang 6568750ddebSJunchao Zhang Not Collective 6578750ddebSJunchao Zhang 6588750ddebSJunchao Zhang Input Arguments: 6598750ddebSJunchao Zhang . sf - star forest 6608750ddebSJunchao Zhang 6618750ddebSJunchao Zhang Output Arguments: 6628750ddebSJunchao Zhang + niranks - number of leaf ranks referencing roots on this process 6638750ddebSJunchao Zhang . iranks - array of ranks 6648750ddebSJunchao Zhang . ioffset - offset in irootloc for each rank (length niranks+1) 6658750ddebSJunchao Zhang - irootloc - concatenated array holding local indices of roots referenced by each leaf rank 6668750ddebSJunchao Zhang 6678750ddebSJunchao Zhang Level: developer 6688750ddebSJunchao Zhang 6698750ddebSJunchao Zhang .seealso: PetscSFGetRanks() 6708750ddebSJunchao Zhang @*/ 6718750ddebSJunchao Zhang PetscErrorCode PetscSFGetLeafRanks(PetscSF sf,PetscInt *niranks,const PetscMPIInt **iranks,const PetscInt **ioffset,const PetscInt **irootloc) 6728750ddebSJunchao Zhang { 6738750ddebSJunchao Zhang PetscErrorCode ierr; 6748750ddebSJunchao Zhang 6758750ddebSJunchao Zhang PetscFunctionBegin; 6768750ddebSJunchao Zhang PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 6778750ddebSJunchao Zhang if (!sf->setupcalled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Must call PetscSFSetUp() before obtaining ranks"); 6788750ddebSJunchao Zhang if (sf->ops->GetLeafRanks) { 6798750ddebSJunchao Zhang ierr = (sf->ops->GetLeafRanks)(sf,niranks,iranks,ioffset,irootloc);CHKERRQ(ierr); 6808750ddebSJunchao Zhang } else { 6818750ddebSJunchao Zhang PetscSFType type; 6828750ddebSJunchao Zhang ierr = PetscSFGetType(sf,&type);CHKERRQ(ierr); 6838750ddebSJunchao Zhang SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"PetscSFGetLeafRanks() is not supported on this StarForest type: %s", type); 6848750ddebSJunchao Zhang } 6858750ddebSJunchao Zhang PetscFunctionReturn(0); 6868750ddebSJunchao Zhang } 6878750ddebSJunchao Zhang 688b5a8e515SJed Brown static PetscBool InList(PetscMPIInt needle,PetscMPIInt n,const PetscMPIInt *list) { 689b5a8e515SJed Brown PetscInt i; 690b5a8e515SJed Brown for (i=0; i<n; i++) { 691b5a8e515SJed Brown if (needle == list[i]) return PETSC_TRUE; 692b5a8e515SJed Brown } 693b5a8e515SJed Brown return PETSC_FALSE; 694b5a8e515SJed Brown } 695b5a8e515SJed Brown 69695fce210SBarry Smith /*@C 69721c688dcSJed Brown PetscSFSetUpRanks - Set up data structures associated with ranks; this is for internal use by PetscSF implementations. 69821c688dcSJed Brown 69921c688dcSJed Brown Collective 70021c688dcSJed Brown 70121c688dcSJed Brown Input Arguments: 702b5a8e515SJed Brown + sf - PetscSF to set up; PetscSFSetGraph() must have been called 703b5a8e515SJed Brown - dgroup - MPI_Group of ranks to be distinguished (e.g., for self or shared memory exchange) 70421c688dcSJed Brown 70521c688dcSJed Brown Level: developer 70621c688dcSJed Brown 70721c688dcSJed Brown .seealso: PetscSFGetRanks() 70821c688dcSJed Brown @*/ 709b5a8e515SJed Brown PetscErrorCode PetscSFSetUpRanks(PetscSF sf,MPI_Group dgroup) 71021c688dcSJed Brown { 71121c688dcSJed Brown PetscErrorCode ierr; 71221c688dcSJed Brown PetscTable table; 71321c688dcSJed Brown PetscTablePosition pos; 714b5a8e515SJed Brown PetscMPIInt size,groupsize,*groupranks; 715247e8311SStefano Zampini PetscInt *rcount,*ranks; 716247e8311SStefano Zampini PetscInt i, irank = -1,orank = -1; 71721c688dcSJed Brown 71821c688dcSJed Brown PetscFunctionBegin; 71921c688dcSJed Brown PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 72029046d53SLisandro Dalcin PetscSFCheckGraphSet(sf,1); 72121c688dcSJed Brown ierr = MPI_Comm_size(PetscObjectComm((PetscObject)sf),&size);CHKERRQ(ierr); 72221c688dcSJed Brown ierr = PetscTableCreate(10,size,&table);CHKERRQ(ierr); 72321c688dcSJed Brown for (i=0; i<sf->nleaves; i++) { 72421c688dcSJed Brown /* Log 1-based rank */ 72521c688dcSJed Brown ierr = PetscTableAdd(table,sf->remote[i].rank+1,1,ADD_VALUES);CHKERRQ(ierr); 72621c688dcSJed Brown } 72721c688dcSJed Brown ierr = PetscTableGetCount(table,&sf->nranks);CHKERRQ(ierr); 72821c688dcSJed Brown ierr = PetscMalloc4(sf->nranks,&sf->ranks,sf->nranks+1,&sf->roffset,sf->nleaves,&sf->rmine,sf->nleaves,&sf->rremote);CHKERRQ(ierr); 72921c688dcSJed Brown ierr = PetscMalloc2(sf->nranks,&rcount,sf->nranks,&ranks);CHKERRQ(ierr); 73021c688dcSJed Brown ierr = PetscTableGetHeadPosition(table,&pos);CHKERRQ(ierr); 73121c688dcSJed Brown for (i=0; i<sf->nranks; i++) { 73221c688dcSJed Brown ierr = PetscTableGetNext(table,&pos,&ranks[i],&rcount[i]);CHKERRQ(ierr); 73321c688dcSJed Brown ranks[i]--; /* Convert back to 0-based */ 73421c688dcSJed Brown } 73521c688dcSJed Brown ierr = PetscTableDestroy(&table);CHKERRQ(ierr); 736b5a8e515SJed Brown 737b5a8e515SJed Brown /* We expect that dgroup is reliably "small" while nranks could be large */ 738b5a8e515SJed Brown { 7397fb8a5e4SKarl Rupp MPI_Group group = MPI_GROUP_NULL; 740b5a8e515SJed Brown PetscMPIInt *dgroupranks; 741b5a8e515SJed Brown ierr = MPI_Comm_group(PetscObjectComm((PetscObject)sf),&group);CHKERRQ(ierr); 742b5a8e515SJed Brown ierr = MPI_Group_size(dgroup,&groupsize);CHKERRQ(ierr); 743b5a8e515SJed Brown ierr = PetscMalloc1(groupsize,&dgroupranks);CHKERRQ(ierr); 744b5a8e515SJed Brown ierr = PetscMalloc1(groupsize,&groupranks);CHKERRQ(ierr); 745b5a8e515SJed Brown for (i=0; i<groupsize; i++) dgroupranks[i] = i; 746f3fc9a17SJed Brown if (groupsize) {ierr = MPI_Group_translate_ranks(dgroup,groupsize,dgroupranks,group,groupranks);CHKERRQ(ierr);} 747b5a8e515SJed Brown ierr = MPI_Group_free(&group);CHKERRQ(ierr); 748b5a8e515SJed Brown ierr = PetscFree(dgroupranks);CHKERRQ(ierr); 749b5a8e515SJed Brown } 750b5a8e515SJed Brown 751b5a8e515SJed Brown /* Partition ranks[] into distinguished (first sf->ndranks) followed by non-distinguished */ 752b5a8e515SJed Brown for (sf->ndranks=0,i=sf->nranks; sf->ndranks<i; ) { 753b5a8e515SJed Brown for (i--; sf->ndranks<i; i--) { /* Scan i backward looking for distinguished rank */ 754b5a8e515SJed Brown if (InList(ranks[i],groupsize,groupranks)) break; 755b5a8e515SJed Brown } 756b5a8e515SJed Brown for ( ; sf->ndranks<=i; sf->ndranks++) { /* Scan sf->ndranks forward looking for non-distinguished rank */ 757b5a8e515SJed Brown if (!InList(ranks[sf->ndranks],groupsize,groupranks)) break; 758b5a8e515SJed Brown } 759b5a8e515SJed Brown if (sf->ndranks < i) { /* Swap ranks[sf->ndranks] with ranks[i] */ 760b5a8e515SJed Brown PetscInt tmprank,tmpcount; 761247e8311SStefano Zampini 762b5a8e515SJed Brown tmprank = ranks[i]; 763b5a8e515SJed Brown tmpcount = rcount[i]; 764b5a8e515SJed Brown ranks[i] = ranks[sf->ndranks]; 765b5a8e515SJed Brown rcount[i] = rcount[sf->ndranks]; 766b5a8e515SJed Brown ranks[sf->ndranks] = tmprank; 767b5a8e515SJed Brown rcount[sf->ndranks] = tmpcount; 768b5a8e515SJed Brown sf->ndranks++; 769b5a8e515SJed Brown } 770b5a8e515SJed Brown } 771b5a8e515SJed Brown ierr = PetscFree(groupranks);CHKERRQ(ierr); 772b5a8e515SJed Brown ierr = PetscSortIntWithArray(sf->ndranks,ranks,rcount);CHKERRQ(ierr); 773b5a8e515SJed Brown ierr = PetscSortIntWithArray(sf->nranks-sf->ndranks,ranks+sf->ndranks,rcount+sf->ndranks);CHKERRQ(ierr); 77421c688dcSJed Brown sf->roffset[0] = 0; 77521c688dcSJed Brown for (i=0; i<sf->nranks; i++) { 77621c688dcSJed Brown ierr = PetscMPIIntCast(ranks[i],sf->ranks+i);CHKERRQ(ierr); 77721c688dcSJed Brown sf->roffset[i+1] = sf->roffset[i] + rcount[i]; 77821c688dcSJed Brown rcount[i] = 0; 77921c688dcSJed Brown } 780247e8311SStefano Zampini for (i=0, irank = -1, orank = -1; i<sf->nleaves; i++) { 781247e8311SStefano Zampini /* short circuit */ 782247e8311SStefano Zampini if (orank != sf->remote[i].rank) { 78321c688dcSJed Brown /* Search for index of iremote[i].rank in sf->ranks */ 784b5a8e515SJed Brown ierr = PetscFindMPIInt(sf->remote[i].rank,sf->ndranks,sf->ranks,&irank);CHKERRQ(ierr); 785b5a8e515SJed Brown if (irank < 0) { 786b5a8e515SJed Brown ierr = PetscFindMPIInt(sf->remote[i].rank,sf->nranks-sf->ndranks,sf->ranks+sf->ndranks,&irank);CHKERRQ(ierr); 787b5a8e515SJed Brown if (irank >= 0) irank += sf->ndranks; 78821c688dcSJed Brown } 789247e8311SStefano Zampini orank = sf->remote[i].rank; 790247e8311SStefano Zampini } 791b5a8e515SJed Brown if (irank < 0) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Could not find rank %D in array",sf->remote[i].rank); 79221c688dcSJed Brown sf->rmine[sf->roffset[irank] + rcount[irank]] = sf->mine ? sf->mine[i] : i; 79321c688dcSJed Brown sf->rremote[sf->roffset[irank] + rcount[irank]] = sf->remote[i].index; 79421c688dcSJed Brown rcount[irank]++; 79521c688dcSJed Brown } 79621c688dcSJed Brown ierr = PetscFree2(rcount,ranks);CHKERRQ(ierr); 79721c688dcSJed Brown PetscFunctionReturn(0); 79821c688dcSJed Brown } 79921c688dcSJed Brown 80021c688dcSJed Brown /*@C 80195fce210SBarry Smith PetscSFGetGroups - gets incoming and outgoing process groups 80295fce210SBarry Smith 80395fce210SBarry Smith Collective 80495fce210SBarry Smith 80595fce210SBarry Smith Input Argument: 80695fce210SBarry Smith . sf - star forest 80795fce210SBarry Smith 80895fce210SBarry Smith Output Arguments: 80995fce210SBarry Smith + incoming - group of origin processes for incoming edges (leaves that reference my roots) 81095fce210SBarry Smith - outgoing - group of destination processes for outgoing edges (roots that I reference) 81195fce210SBarry Smith 81295fce210SBarry Smith Level: developer 81395fce210SBarry Smith 81495fce210SBarry Smith .seealso: PetscSFGetWindow(), PetscSFRestoreWindow() 81595fce210SBarry Smith @*/ 81695fce210SBarry Smith PetscErrorCode PetscSFGetGroups(PetscSF sf,MPI_Group *incoming,MPI_Group *outgoing) 81795fce210SBarry Smith { 81895fce210SBarry Smith PetscErrorCode ierr; 8197fb8a5e4SKarl Rupp MPI_Group group = MPI_GROUP_NULL; 82095fce210SBarry Smith 82195fce210SBarry Smith PetscFunctionBegin; 82229046d53SLisandro Dalcin if (!sf->setupcalled) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONGSTATE,"Must call PetscSFSetUp() before obtaining groups"); 82395fce210SBarry Smith if (sf->ingroup == MPI_GROUP_NULL) { 82495fce210SBarry Smith PetscInt i; 82595fce210SBarry Smith const PetscInt *indegree; 82695fce210SBarry Smith PetscMPIInt rank,*outranks,*inranks; 82795fce210SBarry Smith PetscSFNode *remote; 82895fce210SBarry Smith PetscSF bgcount; 82995fce210SBarry Smith 83095fce210SBarry Smith /* Compute the number of incoming ranks */ 831785e854fSJed Brown ierr = PetscMalloc1(sf->nranks,&remote);CHKERRQ(ierr); 83295fce210SBarry Smith for (i=0; i<sf->nranks; i++) { 83395fce210SBarry Smith remote[i].rank = sf->ranks[i]; 83495fce210SBarry Smith remote[i].index = 0; 83595fce210SBarry Smith } 83695fce210SBarry Smith ierr = PetscSFDuplicate(sf,PETSCSF_DUPLICATE_CONFONLY,&bgcount);CHKERRQ(ierr); 83795fce210SBarry Smith ierr = PetscSFSetGraph(bgcount,1,sf->nranks,NULL,PETSC_COPY_VALUES,remote,PETSC_OWN_POINTER);CHKERRQ(ierr); 83895fce210SBarry Smith ierr = PetscSFComputeDegreeBegin(bgcount,&indegree);CHKERRQ(ierr); 83995fce210SBarry Smith ierr = PetscSFComputeDegreeEnd(bgcount,&indegree);CHKERRQ(ierr); 84095fce210SBarry Smith 84195fce210SBarry Smith /* Enumerate the incoming ranks */ 842dcca6d9dSJed Brown ierr = PetscMalloc2(indegree[0],&inranks,sf->nranks,&outranks);CHKERRQ(ierr); 84395fce210SBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)sf),&rank);CHKERRQ(ierr); 84495fce210SBarry Smith for (i=0; i<sf->nranks; i++) outranks[i] = rank; 84595fce210SBarry Smith ierr = PetscSFGatherBegin(bgcount,MPI_INT,outranks,inranks);CHKERRQ(ierr); 84695fce210SBarry Smith ierr = PetscSFGatherEnd(bgcount,MPI_INT,outranks,inranks);CHKERRQ(ierr); 84795fce210SBarry Smith ierr = MPI_Comm_group(PetscObjectComm((PetscObject)sf),&group);CHKERRQ(ierr); 84895fce210SBarry Smith ierr = MPI_Group_incl(group,indegree[0],inranks,&sf->ingroup);CHKERRQ(ierr); 84995fce210SBarry Smith ierr = MPI_Group_free(&group);CHKERRQ(ierr); 85095fce210SBarry Smith ierr = PetscFree2(inranks,outranks);CHKERRQ(ierr); 85195fce210SBarry Smith ierr = PetscSFDestroy(&bgcount);CHKERRQ(ierr); 85295fce210SBarry Smith } 85395fce210SBarry Smith *incoming = sf->ingroup; 85495fce210SBarry Smith 85595fce210SBarry Smith if (sf->outgroup == MPI_GROUP_NULL) { 85695fce210SBarry Smith ierr = MPI_Comm_group(PetscObjectComm((PetscObject)sf),&group);CHKERRQ(ierr); 85795fce210SBarry Smith ierr = MPI_Group_incl(group,sf->nranks,sf->ranks,&sf->outgroup);CHKERRQ(ierr); 85895fce210SBarry Smith ierr = MPI_Group_free(&group);CHKERRQ(ierr); 85995fce210SBarry Smith } 86095fce210SBarry Smith *outgoing = sf->outgroup; 86195fce210SBarry Smith PetscFunctionReturn(0); 86295fce210SBarry Smith } 86395fce210SBarry Smith 86429046d53SLisandro Dalcin /*@ 86595fce210SBarry Smith PetscSFGetMultiSF - gets the inner SF implemeting gathers and scatters 86695fce210SBarry Smith 86795fce210SBarry Smith Collective 86895fce210SBarry Smith 86995fce210SBarry Smith Input Argument: 87095fce210SBarry Smith . sf - star forest that may contain roots with 0 or with more than 1 vertex 87195fce210SBarry Smith 87295fce210SBarry Smith Output Arguments: 87395fce210SBarry Smith . multi - star forest with split roots, such that each root has degree exactly 1 87495fce210SBarry Smith 87595fce210SBarry Smith Level: developer 87695fce210SBarry Smith 87795fce210SBarry Smith Notes: 87895fce210SBarry Smith 87995fce210SBarry Smith In most cases, users should use PetscSFGatherBegin() and PetscSFScatterBegin() instead of manipulating multi 88095fce210SBarry Smith directly. Since multi satisfies the stronger condition that each entry in the global space has exactly one incoming 88195fce210SBarry Smith edge, it is a candidate for future optimization that might involve its removal. 88295fce210SBarry Smith 883673100f5SVaclav Hapla .seealso: PetscSFSetGraph(), PetscSFGatherBegin(), PetscSFScatterBegin(), PetscSFComputeMultiRootOriginalNumbering() 88495fce210SBarry Smith @*/ 88595fce210SBarry Smith PetscErrorCode PetscSFGetMultiSF(PetscSF sf,PetscSF *multi) 88695fce210SBarry Smith { 88795fce210SBarry Smith PetscErrorCode ierr; 88895fce210SBarry Smith 88995fce210SBarry Smith PetscFunctionBegin; 89095fce210SBarry Smith PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 89195fce210SBarry Smith PetscValidPointer(multi,2); 89295fce210SBarry Smith if (sf->nroots < 0) { /* Graph has not been set yet; why do we need this? */ 89395fce210SBarry Smith ierr = PetscSFDuplicate(sf,PETSCSF_DUPLICATE_RANKS,&sf->multi);CHKERRQ(ierr); 89495fce210SBarry Smith *multi = sf->multi; 89595fce210SBarry Smith PetscFunctionReturn(0); 89695fce210SBarry Smith } 89795fce210SBarry Smith if (!sf->multi) { 89895fce210SBarry Smith const PetscInt *indegree; 8999837ea96SMatthew G. Knepley PetscInt i,*inoffset,*outones,*outoffset,maxlocal; 90095fce210SBarry Smith PetscSFNode *remote; 90129046d53SLisandro Dalcin maxlocal = sf->maxleaf+1; /* TODO: We should use PetscSFGetLeafRange() */ 90295fce210SBarry Smith ierr = PetscSFComputeDegreeBegin(sf,&indegree);CHKERRQ(ierr); 90395fce210SBarry Smith ierr = PetscSFComputeDegreeEnd(sf,&indegree);CHKERRQ(ierr); 9049837ea96SMatthew G. Knepley ierr = PetscMalloc3(sf->nroots+1,&inoffset,maxlocal,&outones,maxlocal,&outoffset);CHKERRQ(ierr); 90595fce210SBarry Smith inoffset[0] = 0; 90695fce210SBarry Smith for (i=0; i<sf->nroots; i++) inoffset[i+1] = inoffset[i] + indegree[i]; 9079837ea96SMatthew G. Knepley for (i=0; i<maxlocal; i++) outones[i] = 1; 908dbd2ff41SBarry Smith ierr = PetscSFFetchAndOpBegin(sf,MPIU_INT,inoffset,outones,outoffset,MPI_SUM);CHKERRQ(ierr); 909dbd2ff41SBarry Smith ierr = PetscSFFetchAndOpEnd(sf,MPIU_INT,inoffset,outones,outoffset,MPI_SUM);CHKERRQ(ierr); 91095fce210SBarry Smith for (i=0; i<sf->nroots; i++) inoffset[i] -= indegree[i]; /* Undo the increment */ 91195fce210SBarry Smith #if 0 91295fce210SBarry Smith #if defined(PETSC_USE_DEBUG) /* Check that the expected number of increments occurred */ 91395fce210SBarry Smith for (i=0; i<sf->nroots; i++) { 91495fce210SBarry Smith if (inoffset[i] + indegree[i] != inoffset[i+1]) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"Incorrect result after PetscSFFetchAndOp"); 91595fce210SBarry Smith } 91695fce210SBarry Smith #endif 91795fce210SBarry Smith #endif 918785e854fSJed Brown ierr = PetscMalloc1(sf->nleaves,&remote);CHKERRQ(ierr); 91995fce210SBarry Smith for (i=0; i<sf->nleaves; i++) { 92095fce210SBarry Smith remote[i].rank = sf->remote[i].rank; 92138e7336fSToby Isaac remote[i].index = outoffset[sf->mine ? sf->mine[i] : i]; 92295fce210SBarry Smith } 92395fce210SBarry Smith ierr = PetscSFDuplicate(sf,PETSCSF_DUPLICATE_RANKS,&sf->multi);CHKERRQ(ierr); 92401365b40SToby Isaac ierr = PetscSFSetGraph(sf->multi,inoffset[sf->nroots],sf->nleaves,sf->mine,PETSC_COPY_VALUES,remote,PETSC_OWN_POINTER);CHKERRQ(ierr); 92595fce210SBarry Smith if (sf->rankorder) { /* Sort the ranks */ 92695fce210SBarry Smith PetscMPIInt rank; 92795fce210SBarry Smith PetscInt *inranks,*newoffset,*outranks,*newoutoffset,*tmpoffset,maxdegree; 92895fce210SBarry Smith PetscSFNode *newremote; 92995fce210SBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)sf),&rank);CHKERRQ(ierr); 93095fce210SBarry Smith for (i=0,maxdegree=0; i<sf->nroots; i++) maxdegree = PetscMax(maxdegree,indegree[i]); 9319837ea96SMatthew G. Knepley ierr = PetscMalloc5(sf->multi->nroots,&inranks,sf->multi->nroots,&newoffset,maxlocal,&outranks,maxlocal,&newoutoffset,maxdegree,&tmpoffset);CHKERRQ(ierr); 9329837ea96SMatthew G. Knepley for (i=0; i<maxlocal; i++) outranks[i] = rank; 9338bfbc91cSJed Brown ierr = PetscSFReduceBegin(sf->multi,MPIU_INT,outranks,inranks,MPIU_REPLACE);CHKERRQ(ierr); 9348bfbc91cSJed Brown ierr = PetscSFReduceEnd(sf->multi,MPIU_INT,outranks,inranks,MPIU_REPLACE);CHKERRQ(ierr); 93595fce210SBarry Smith /* Sort the incoming ranks at each vertex, build the inverse map */ 93695fce210SBarry Smith for (i=0; i<sf->nroots; i++) { 93795fce210SBarry Smith PetscInt j; 93895fce210SBarry Smith for (j=0; j<indegree[i]; j++) tmpoffset[j] = j; 93995fce210SBarry Smith ierr = PetscSortIntWithArray(indegree[i],inranks+inoffset[i],tmpoffset);CHKERRQ(ierr); 94095fce210SBarry Smith for (j=0; j<indegree[i]; j++) newoffset[inoffset[i] + tmpoffset[j]] = inoffset[i] + j; 94195fce210SBarry Smith } 94295fce210SBarry Smith ierr = PetscSFBcastBegin(sf->multi,MPIU_INT,newoffset,newoutoffset);CHKERRQ(ierr); 94395fce210SBarry Smith ierr = PetscSFBcastEnd(sf->multi,MPIU_INT,newoffset,newoutoffset);CHKERRQ(ierr); 944785e854fSJed Brown ierr = PetscMalloc1(sf->nleaves,&newremote);CHKERRQ(ierr); 94595fce210SBarry Smith for (i=0; i<sf->nleaves; i++) { 94695fce210SBarry Smith newremote[i].rank = sf->remote[i].rank; 94701365b40SToby Isaac newremote[i].index = newoutoffset[sf->mine ? sf->mine[i] : i]; 94895fce210SBarry Smith } 94901365b40SToby Isaac ierr = PetscSFSetGraph(sf->multi,inoffset[sf->nroots],sf->nleaves,sf->mine,PETSC_COPY_VALUES,newremote,PETSC_OWN_POINTER);CHKERRQ(ierr); 95095fce210SBarry Smith ierr = PetscFree5(inranks,newoffset,outranks,newoutoffset,tmpoffset);CHKERRQ(ierr); 95195fce210SBarry Smith } 95295fce210SBarry Smith ierr = PetscFree3(inoffset,outones,outoffset);CHKERRQ(ierr); 95395fce210SBarry Smith } 95495fce210SBarry Smith *multi = sf->multi; 95595fce210SBarry Smith PetscFunctionReturn(0); 95695fce210SBarry Smith } 95795fce210SBarry Smith 95895fce210SBarry Smith /*@C 95995fce210SBarry Smith PetscSFCreateEmbeddedSF - removes edges from all but the selected roots, does not remap indices 96095fce210SBarry Smith 96195fce210SBarry Smith Collective 96295fce210SBarry Smith 96395fce210SBarry Smith Input Arguments: 96495fce210SBarry Smith + sf - original star forest 965ba2a7774SJunchao Zhang . nselected - number of selected roots on this process 966ba2a7774SJunchao Zhang - selected - indices of the selected roots on this process 96795fce210SBarry Smith 96895fce210SBarry Smith Output Arguments: 96995fce210SBarry Smith . newsf - new star forest 97095fce210SBarry Smith 97195fce210SBarry Smith Level: advanced 97295fce210SBarry Smith 97395fce210SBarry Smith Note: 97495fce210SBarry Smith To use the new PetscSF, it may be necessary to know the indices of the leaves that are still participating. This can 97595fce210SBarry Smith be done by calling PetscSFGetGraph(). 97695fce210SBarry Smith 97795fce210SBarry Smith .seealso: PetscSFSetGraph(), PetscSFGetGraph() 97895fce210SBarry Smith @*/ 979ba2a7774SJunchao Zhang PetscErrorCode PetscSFCreateEmbeddedSF(PetscSF sf,PetscInt nselected,const PetscInt *selected,PetscSF *newsf) 98095fce210SBarry Smith { 981ba2a7774SJunchao Zhang PetscInt *rootdata,*leafdata,*new_ilocal; 982ba2a7774SJunchao Zhang PetscSFNode *new_iremote; 983ba2a7774SJunchao Zhang const PetscInt *ilocal; 984ba2a7774SJunchao Zhang const PetscSFNode *iremote; 985ba2a7774SJunchao Zhang PetscInt nleaves,nroots,n,i,new_nleaves = 0; 986ba2a7774SJunchao Zhang PetscSF tmpsf; 9870511a646SMatthew G. Knepley PetscErrorCode ierr; 98895fce210SBarry Smith 98995fce210SBarry Smith PetscFunctionBegin; 99095fce210SBarry Smith PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 99129046d53SLisandro Dalcin PetscSFCheckGraphSet(sf,1); 992ba2a7774SJunchao Zhang if (nselected) PetscValidPointer(selected,3); 99395fce210SBarry Smith PetscValidPointer(newsf,4); 994524e35f8SStefano Zampini ierr = PetscLogEventBegin(PETSCSF_EmbedSF,sf,0,0,0);CHKERRQ(ierr); 9950511a646SMatthew G. Knepley 996ba2a7774SJunchao Zhang /* Find out which leaves (not leaf data items) are still connected to roots in the embedded sf */ 997ba2a7774SJunchao Zhang ierr = PetscSFGetGraph(sf,&nroots,&nleaves,&ilocal,&iremote);CHKERRQ(ierr); 998ba2a7774SJunchao Zhang ierr = PetscSFDuplicate(sf,PETSCSF_DUPLICATE_RANKS,&tmpsf);CHKERRQ(ierr); 999ba2a7774SJunchao Zhang ierr = PetscSFSetGraph(tmpsf,nroots,nleaves,NULL/*contiguous*/,PETSC_USE_POINTER,iremote,PETSC_USE_POINTER);CHKERRQ(ierr); 1000ba2a7774SJunchao Zhang ierr = PetscCalloc2(nroots,&rootdata,nleaves,&leafdata);CHKERRQ(ierr); 1001ba2a7774SJunchao Zhang for (i=0; i<nselected; ++i) { 100246fbb50bSJunchao Zhang if (selected[i] < 0 || selected[i] >= nroots) SETERRQ2(PetscObjectComm((PetscObject)sf),PETSC_ERR_ARG_OUTOFRANGE,"Root index %D is not in [0,%D)",selected[i],nroots); 1003ba2a7774SJunchao Zhang rootdata[selected[i]] = 1; 1004ba2a7774SJunchao Zhang } 1005ba2a7774SJunchao Zhang 1006ba2a7774SJunchao Zhang ierr = PetscSFBcastBegin(tmpsf,MPIU_INT,rootdata,leafdata);CHKERRQ(ierr); 1007ba2a7774SJunchao Zhang ierr = PetscSFBcastEnd(tmpsf,MPIU_INT,rootdata,leafdata);CHKERRQ(ierr); 1008ba2a7774SJunchao Zhang ierr = PetscSFDestroy(&tmpsf);CHKERRQ(ierr); 1009ba2a7774SJunchao Zhang 1010ba2a7774SJunchao Zhang /* Build newsf with leaves that are still connected */ 1011ba2a7774SJunchao Zhang for (i = 0; i < nleaves; ++i) new_nleaves += leafdata[i]; 1012ba2a7774SJunchao Zhang ierr = PetscMalloc1(new_nleaves,&new_ilocal);CHKERRQ(ierr); 1013ba2a7774SJunchao Zhang ierr = PetscMalloc1(new_nleaves,&new_iremote);CHKERRQ(ierr); 1014ba2a7774SJunchao Zhang for (i = 0, n = 0; i < nleaves; ++i) { 1015ba2a7774SJunchao Zhang if (leafdata[i]) { 1016ba2a7774SJunchao Zhang new_ilocal[n] = sf->mine ? sf->mine[i] : i; 1017ba2a7774SJunchao Zhang new_iremote[n].rank = sf->remote[i].rank; 1018ba2a7774SJunchao Zhang new_iremote[n].index = sf->remote[i].index; 1019fc1ede2bSMatthew G. Knepley ++n; 102095fce210SBarry Smith } 102195fce210SBarry Smith } 102241bb73faSSatish Balay if (n != new_nleaves) SETERRQ2(PETSC_COMM_SELF,PETSC_ERR_PLIB,"There is a size mismatch in the SF embedding, %D != %D",n,new_nleaves); 1023ba2a7774SJunchao Zhang ierr = PetscSFDuplicate(sf,PETSCSF_DUPLICATE_CONFONLY,newsf);CHKERRQ(ierr); 1024ba2a7774SJunchao Zhang ierr = PetscSFSetGraph(*newsf,nroots,new_nleaves,new_ilocal,PETSC_OWN_POINTER,new_iremote,PETSC_OWN_POINTER);CHKERRQ(ierr); 102595fce210SBarry Smith ierr = PetscFree2(rootdata,leafdata);CHKERRQ(ierr); 1026524e35f8SStefano Zampini ierr = PetscSFSetUp(*newsf);CHKERRQ(ierr); 1027524e35f8SStefano Zampini ierr = PetscLogEventEnd(PETSCSF_EmbedSF,sf,0,0,0);CHKERRQ(ierr); 102895fce210SBarry Smith PetscFunctionReturn(0); 102995fce210SBarry Smith } 103095fce210SBarry Smith 10312f5fb4c2SMatthew G. Knepley /*@C 10322f5fb4c2SMatthew G. Knepley PetscSFCreateEmbeddedLeafSF - removes edges from all but the selected leaves, does not remap indices 10332f5fb4c2SMatthew G. Knepley 10342f5fb4c2SMatthew G. Knepley Collective 10352f5fb4c2SMatthew G. Knepley 10362f5fb4c2SMatthew G. Knepley Input Arguments: 10372f5fb4c2SMatthew G. Knepley + sf - original star forest 10382f5fb4c2SMatthew G. Knepley . nleaves - number of leaves to select on this process 10392f5fb4c2SMatthew G. Knepley - selected - selected leaves on this process 10402f5fb4c2SMatthew G. Knepley 10412f5fb4c2SMatthew G. Knepley Output Arguments: 10422f5fb4c2SMatthew G. Knepley . newsf - new star forest 10432f5fb4c2SMatthew G. Knepley 10442f5fb4c2SMatthew G. Knepley Level: advanced 10452f5fb4c2SMatthew G. Knepley 10462f5fb4c2SMatthew G. Knepley .seealso: PetscSFCreateEmbeddedSF(), PetscSFSetGraph(), PetscSFGetGraph() 10472f5fb4c2SMatthew G. Knepley @*/ 10482f5fb4c2SMatthew G. Knepley PetscErrorCode PetscSFCreateEmbeddedLeafSF(PetscSF sf, PetscInt nleaves, const PetscInt *selected, PetscSF *newsf) 10492f5fb4c2SMatthew G. Knepley { 10502f5fb4c2SMatthew G. Knepley PetscSFNode *iremote; 10512f5fb4c2SMatthew G. Knepley PetscInt *ilocal; 10522f5fb4c2SMatthew G. Knepley PetscInt i; 10532f5fb4c2SMatthew G. Knepley PetscErrorCode ierr; 10542f5fb4c2SMatthew G. Knepley 10552f5fb4c2SMatthew G. Knepley PetscFunctionBegin; 10562f5fb4c2SMatthew G. Knepley PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 105729046d53SLisandro Dalcin PetscSFCheckGraphSet(sf, 1); 10582f5fb4c2SMatthew G. Knepley if (nleaves) PetscValidPointer(selected, 3); 10592f5fb4c2SMatthew G. Knepley PetscValidPointer(newsf, 4); 10602f5fb4c2SMatthew G. Knepley ierr = PetscMalloc1(nleaves, &ilocal);CHKERRQ(ierr); 10612f5fb4c2SMatthew G. Knepley ierr = PetscMalloc1(nleaves, &iremote);CHKERRQ(ierr); 10622f5fb4c2SMatthew G. Knepley for (i = 0; i < nleaves; ++i) { 10632f5fb4c2SMatthew G. Knepley const PetscInt l = selected[i]; 10642f5fb4c2SMatthew G. Knepley 10652f5fb4c2SMatthew G. Knepley ilocal[i] = sf->mine ? sf->mine[l] : l; 10662f5fb4c2SMatthew G. Knepley iremote[i].rank = sf->remote[l].rank; 10672f5fb4c2SMatthew G. Knepley iremote[i].index = sf->remote[l].index; 10682f5fb4c2SMatthew G. Knepley } 10692f5fb4c2SMatthew G. Knepley ierr = PetscSFDuplicate(sf, PETSCSF_DUPLICATE_RANKS, newsf);CHKERRQ(ierr); 10702f5fb4c2SMatthew G. Knepley ierr = PetscSFSetGraph(*newsf, sf->nroots, nleaves, ilocal, PETSC_OWN_POINTER, iremote, PETSC_OWN_POINTER);CHKERRQ(ierr); 10712f5fb4c2SMatthew G. Knepley PetscFunctionReturn(0); 10722f5fb4c2SMatthew G. Knepley } 10732f5fb4c2SMatthew G. Knepley 107495fce210SBarry Smith /*@C 107595fce210SBarry Smith PetscSFBcastBegin - begin pointwise broadcast to be concluded with call to PetscSFBcastEnd() 107695fce210SBarry Smith 107795fce210SBarry Smith Collective on PetscSF 107895fce210SBarry Smith 107995fce210SBarry Smith Input Arguments: 108095fce210SBarry Smith + sf - star forest on which to communicate 108195fce210SBarry Smith . unit - data type associated with each node 108295fce210SBarry Smith - rootdata - buffer to broadcast 108395fce210SBarry Smith 108495fce210SBarry Smith Output Arguments: 108595fce210SBarry Smith . leafdata - buffer to update with values from each leaf's respective root 108695fce210SBarry Smith 108795fce210SBarry Smith Level: intermediate 108895fce210SBarry Smith 108995fce210SBarry Smith .seealso: PetscSFCreate(), PetscSFSetGraph(), PetscSFView(), PetscSFBcastEnd(), PetscSFReduceBegin() 109095fce210SBarry Smith @*/ 109195fce210SBarry Smith PetscErrorCode PetscSFBcastBegin(PetscSF sf,MPI_Datatype unit,const void *rootdata,void *leafdata) 109295fce210SBarry Smith { 109395fce210SBarry Smith PetscErrorCode ierr; 109495fce210SBarry Smith 109595fce210SBarry Smith PetscFunctionBegin; 109695fce210SBarry Smith PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 109795fce210SBarry Smith ierr = PetscSFSetUp(sf);CHKERRQ(ierr); 109829046d53SLisandro Dalcin ierr = PetscLogEventBegin(PETSCSF_BcastBegin,sf,0,0,0);CHKERRQ(ierr); 109995fce210SBarry Smith ierr = (*sf->ops->BcastBegin)(sf,unit,rootdata,leafdata);CHKERRQ(ierr); 1100563ffbabSMatthew G. Knepley ierr = PetscLogEventEnd(PETSCSF_BcastBegin,sf,0,0,0);CHKERRQ(ierr); 110195fce210SBarry Smith PetscFunctionReturn(0); 110295fce210SBarry Smith } 110395fce210SBarry Smith 110495fce210SBarry Smith /*@C 110595fce210SBarry Smith PetscSFBcastEnd - end a broadcast operation started with PetscSFBcastBegin() 110695fce210SBarry Smith 110795fce210SBarry Smith Collective 110895fce210SBarry Smith 110995fce210SBarry Smith Input Arguments: 111095fce210SBarry Smith + sf - star forest 111195fce210SBarry Smith . unit - data type 111295fce210SBarry Smith - rootdata - buffer to broadcast 111395fce210SBarry Smith 111495fce210SBarry Smith Output Arguments: 111595fce210SBarry Smith . leafdata - buffer to update with values from each leaf's respective root 111695fce210SBarry Smith 111795fce210SBarry Smith Level: intermediate 111895fce210SBarry Smith 111995fce210SBarry Smith .seealso: PetscSFSetGraph(), PetscSFReduceEnd() 112095fce210SBarry Smith @*/ 112195fce210SBarry Smith PetscErrorCode PetscSFBcastEnd(PetscSF sf,MPI_Datatype unit,const void *rootdata,void *leafdata) 112295fce210SBarry Smith { 112395fce210SBarry Smith PetscErrorCode ierr; 112495fce210SBarry Smith 112595fce210SBarry Smith PetscFunctionBegin; 112695fce210SBarry Smith PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 112795fce210SBarry Smith ierr = PetscSFSetUp(sf);CHKERRQ(ierr); 112829046d53SLisandro Dalcin ierr = PetscLogEventBegin(PETSCSF_BcastEnd,sf,0,0,0);CHKERRQ(ierr); 112995fce210SBarry Smith ierr = (*sf->ops->BcastEnd)(sf,unit,rootdata,leafdata);CHKERRQ(ierr); 1130563ffbabSMatthew G. Knepley ierr = PetscLogEventEnd(PETSCSF_BcastEnd,sf,0,0,0);CHKERRQ(ierr); 113195fce210SBarry Smith PetscFunctionReturn(0); 113295fce210SBarry Smith } 113395fce210SBarry Smith 113495fce210SBarry Smith /*@C 11353482bfa8SJunchao Zhang PetscSFBcastAndOpBegin - begin pointwise broadcast with root value being reduced to leaf value, to be concluded with call to PetscSFBcastAndOpEnd() 11363482bfa8SJunchao Zhang 11373482bfa8SJunchao Zhang Collective on PetscSF 11383482bfa8SJunchao Zhang 11393482bfa8SJunchao Zhang Input Arguments: 11403482bfa8SJunchao Zhang + sf - star forest on which to communicate 11413482bfa8SJunchao Zhang . unit - data type associated with each node 11423482bfa8SJunchao Zhang . rootdata - buffer to broadcast 11433482bfa8SJunchao Zhang - op - operation to use for reduction 11443482bfa8SJunchao Zhang 11453482bfa8SJunchao Zhang Output Arguments: 11463482bfa8SJunchao Zhang . leafdata - buffer to be reduced with values from each leaf's respective root 11473482bfa8SJunchao Zhang 11483482bfa8SJunchao Zhang Level: intermediate 11493482bfa8SJunchao Zhang 11503482bfa8SJunchao Zhang .seealso: PetscSFBcastAndOpEnd(), PetscSFBcastBegin(), PetscSFBcastEnd() 11513482bfa8SJunchao Zhang @*/ 11523482bfa8SJunchao Zhang PetscErrorCode PetscSFBcastAndOpBegin(PetscSF sf,MPI_Datatype unit,const void *rootdata,void *leafdata,MPI_Op op) 11533482bfa8SJunchao Zhang { 11543482bfa8SJunchao Zhang PetscErrorCode ierr; 11553482bfa8SJunchao Zhang 11563482bfa8SJunchao Zhang PetscFunctionBegin; 11573482bfa8SJunchao Zhang PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 11583482bfa8SJunchao Zhang ierr = PetscSFSetUp(sf);CHKERRQ(ierr); 11593482bfa8SJunchao Zhang ierr = PetscLogEventBegin(PETSCSF_BcastAndOpBegin,sf,0,0,0);CHKERRQ(ierr); 11603482bfa8SJunchao Zhang ierr = (*sf->ops->BcastAndOpBegin)(sf,unit,rootdata,leafdata,op);CHKERRQ(ierr); 11613482bfa8SJunchao Zhang ierr = PetscLogEventEnd(PETSCSF_BcastAndOpBegin,sf,0,0,0);CHKERRQ(ierr); 11623482bfa8SJunchao Zhang PetscFunctionReturn(0); 11633482bfa8SJunchao Zhang } 11643482bfa8SJunchao Zhang 11653482bfa8SJunchao Zhang /*@C 11663482bfa8SJunchao Zhang PetscSFBcastAndOpEnd - end a broadcast & reduce operation started with PetscSFBcastAndOpBegin() 11673482bfa8SJunchao Zhang 11683482bfa8SJunchao Zhang Collective 11693482bfa8SJunchao Zhang 11703482bfa8SJunchao Zhang Input Arguments: 11713482bfa8SJunchao Zhang + sf - star forest 11723482bfa8SJunchao Zhang . unit - data type 11733482bfa8SJunchao Zhang . rootdata - buffer to broadcast 11743482bfa8SJunchao Zhang - op - operation to use for reduction 11753482bfa8SJunchao Zhang 11763482bfa8SJunchao Zhang Output Arguments: 11773482bfa8SJunchao Zhang . leafdata - buffer to be reduced with values from each leaf's respective root 11783482bfa8SJunchao Zhang 11793482bfa8SJunchao Zhang Level: intermediate 11803482bfa8SJunchao Zhang 11813482bfa8SJunchao Zhang .seealso: PetscSFSetGraph(), PetscSFReduceEnd() 11823482bfa8SJunchao Zhang @*/ 11833482bfa8SJunchao Zhang PetscErrorCode PetscSFBcastAndOpEnd(PetscSF sf,MPI_Datatype unit,const void *rootdata,void *leafdata,MPI_Op op) 11843482bfa8SJunchao Zhang { 11853482bfa8SJunchao Zhang PetscErrorCode ierr; 11863482bfa8SJunchao Zhang 11873482bfa8SJunchao Zhang PetscFunctionBegin; 11883482bfa8SJunchao Zhang PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 11893482bfa8SJunchao Zhang ierr = PetscSFSetUp(sf);CHKERRQ(ierr); 11903482bfa8SJunchao Zhang ierr = PetscLogEventBegin(PETSCSF_BcastAndOpEnd,sf,0,0,0);CHKERRQ(ierr); 11913482bfa8SJunchao Zhang ierr = (*sf->ops->BcastAndOpEnd)(sf,unit,rootdata,leafdata,op);CHKERRQ(ierr); 11923482bfa8SJunchao Zhang ierr = PetscLogEventEnd(PETSCSF_BcastAndOpEnd,sf,0,0,0);CHKERRQ(ierr); 11933482bfa8SJunchao Zhang PetscFunctionReturn(0); 11943482bfa8SJunchao Zhang } 11953482bfa8SJunchao Zhang 11963482bfa8SJunchao Zhang /*@C 119795fce210SBarry Smith PetscSFReduceBegin - begin reduction of leafdata into rootdata, to be completed with call to PetscSFReduceEnd() 119895fce210SBarry Smith 119995fce210SBarry Smith Collective 120095fce210SBarry Smith 120195fce210SBarry Smith Input Arguments: 120295fce210SBarry Smith + sf - star forest 120395fce210SBarry Smith . unit - data type 120495fce210SBarry Smith . leafdata - values to reduce 120595fce210SBarry Smith - op - reduction operation 120695fce210SBarry Smith 120795fce210SBarry Smith Output Arguments: 120895fce210SBarry Smith . rootdata - result of reduction of values from all leaves of each root 120995fce210SBarry Smith 121095fce210SBarry Smith Level: intermediate 121195fce210SBarry Smith 121295fce210SBarry Smith .seealso: PetscSFBcastBegin() 121395fce210SBarry Smith @*/ 121495fce210SBarry Smith PetscErrorCode PetscSFReduceBegin(PetscSF sf,MPI_Datatype unit,const void *leafdata,void *rootdata,MPI_Op op) 121595fce210SBarry Smith { 121695fce210SBarry Smith PetscErrorCode ierr; 121795fce210SBarry Smith 121895fce210SBarry Smith PetscFunctionBegin; 121995fce210SBarry Smith PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 122095fce210SBarry Smith ierr = PetscSFSetUp(sf);CHKERRQ(ierr); 122129046d53SLisandro Dalcin ierr = PetscLogEventBegin(PETSCSF_ReduceBegin,sf,0,0,0);CHKERRQ(ierr); 122295fce210SBarry Smith ierr = (sf->ops->ReduceBegin)(sf,unit,leafdata,rootdata,op);CHKERRQ(ierr); 1223563ffbabSMatthew G. Knepley ierr = PetscLogEventEnd(PETSCSF_ReduceBegin,sf,0,0,0);CHKERRQ(ierr); 122495fce210SBarry Smith PetscFunctionReturn(0); 122595fce210SBarry Smith } 122695fce210SBarry Smith 122795fce210SBarry Smith /*@C 122895fce210SBarry Smith PetscSFReduceEnd - end a reduction operation started with PetscSFReduceBegin() 122995fce210SBarry Smith 123095fce210SBarry Smith Collective 123195fce210SBarry Smith 123295fce210SBarry Smith Input Arguments: 123395fce210SBarry Smith + sf - star forest 123495fce210SBarry Smith . unit - data type 123595fce210SBarry Smith . leafdata - values to reduce 123695fce210SBarry Smith - op - reduction operation 123795fce210SBarry Smith 123895fce210SBarry Smith Output Arguments: 123995fce210SBarry Smith . rootdata - result of reduction of values from all leaves of each root 124095fce210SBarry Smith 124195fce210SBarry Smith Level: intermediate 124295fce210SBarry Smith 124395fce210SBarry Smith .seealso: PetscSFSetGraph(), PetscSFBcastEnd() 124495fce210SBarry Smith @*/ 124595fce210SBarry Smith PetscErrorCode PetscSFReduceEnd(PetscSF sf,MPI_Datatype unit,const void *leafdata,void *rootdata,MPI_Op op) 124695fce210SBarry Smith { 124795fce210SBarry Smith PetscErrorCode ierr; 124895fce210SBarry Smith 124995fce210SBarry Smith PetscFunctionBegin; 125095fce210SBarry Smith PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 125195fce210SBarry Smith ierr = PetscSFSetUp(sf);CHKERRQ(ierr); 125229046d53SLisandro Dalcin ierr = PetscLogEventBegin(PETSCSF_ReduceEnd,sf,0,0,0);CHKERRQ(ierr); 125395fce210SBarry Smith ierr = (*sf->ops->ReduceEnd)(sf,unit,leafdata,rootdata,op);CHKERRQ(ierr); 1254563ffbabSMatthew G. Knepley ierr = PetscLogEventEnd(PETSCSF_ReduceEnd,sf,0,0,0);CHKERRQ(ierr); 125595fce210SBarry Smith PetscFunctionReturn(0); 125695fce210SBarry Smith } 125795fce210SBarry Smith 125895fce210SBarry Smith /*@C 125995fce210SBarry Smith PetscSFComputeDegreeBegin - begin computation of degree for each root vertex, to be completed with PetscSFComputeDegreeEnd() 126095fce210SBarry Smith 126195fce210SBarry Smith Collective 126295fce210SBarry Smith 126395fce210SBarry Smith Input Arguments: 126495fce210SBarry Smith . sf - star forest 126595fce210SBarry Smith 126695fce210SBarry Smith Output Arguments: 126795fce210SBarry Smith . degree - degree of each root vertex 126895fce210SBarry Smith 126995fce210SBarry Smith Level: advanced 127095fce210SBarry Smith 1271ffe67aa5SVáclav Hapla Notes: 1272ffe67aa5SVáclav Hapla The returned array is owned by PetscSF and automatically freed by PetscSFDestroy(). Hence no need to call PetscFree() on it. 1273ffe67aa5SVáclav Hapla 127495fce210SBarry Smith .seealso: PetscSFGatherBegin() 127595fce210SBarry Smith @*/ 127695fce210SBarry Smith PetscErrorCode PetscSFComputeDegreeBegin(PetscSF sf,const PetscInt **degree) 127795fce210SBarry Smith { 127895fce210SBarry Smith PetscErrorCode ierr; 127995fce210SBarry Smith 128095fce210SBarry Smith PetscFunctionBegin; 128195fce210SBarry Smith PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 128295fce210SBarry Smith PetscSFCheckGraphSet(sf,1); 128395fce210SBarry Smith PetscValidPointer(degree,2); 1284803bd9e8SMatthew G. Knepley if (!sf->degreeknown) { 128529046d53SLisandro Dalcin PetscInt i, nroots = sf->nroots, maxlocal = sf->maxleaf+1; /* TODO: We should use PetscSFGetLeafRange() */ 1286803bd9e8SMatthew G. Knepley if (sf->degree) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Calls to PetscSFComputeDegreeBegin() cannot be nested."); 128729046d53SLisandro Dalcin ierr = PetscMalloc1(nroots,&sf->degree);CHKERRQ(ierr); 128829046d53SLisandro Dalcin ierr = PetscMalloc1(PetscMax(maxlocal,1),&sf->degreetmp);CHKERRQ(ierr); /* allocate at least one entry, see check in PetscSFComputeDegreeEnd() */ 128929046d53SLisandro Dalcin for (i=0; i<nroots; i++) sf->degree[i] = 0; 12909837ea96SMatthew G. Knepley for (i=0; i<maxlocal; i++) sf->degreetmp[i] = 1; 1291dbd2ff41SBarry Smith ierr = PetscSFReduceBegin(sf,MPIU_INT,sf->degreetmp,sf->degree,MPI_SUM);CHKERRQ(ierr); 129295fce210SBarry Smith } 129395fce210SBarry Smith *degree = NULL; 129495fce210SBarry Smith PetscFunctionReturn(0); 129595fce210SBarry Smith } 129695fce210SBarry Smith 129795fce210SBarry Smith /*@C 129895fce210SBarry Smith PetscSFComputeDegreeEnd - complete computation of degree for each root vertex, started with PetscSFComputeDegreeBegin() 129995fce210SBarry Smith 130095fce210SBarry Smith Collective 130195fce210SBarry Smith 130295fce210SBarry Smith Input Arguments: 130395fce210SBarry Smith . sf - star forest 130495fce210SBarry Smith 130595fce210SBarry Smith Output Arguments: 130695fce210SBarry Smith . degree - degree of each root vertex 130795fce210SBarry Smith 130895fce210SBarry Smith Level: developer 130995fce210SBarry Smith 1310ffe67aa5SVáclav Hapla Notes: 1311ffe67aa5SVáclav Hapla The returned array is owned by PetscSF and automatically freed by PetscSFDestroy(). Hence no need to call PetscFree() on it. 1312ffe67aa5SVáclav Hapla 131395fce210SBarry Smith .seealso: 131495fce210SBarry Smith @*/ 131595fce210SBarry Smith PetscErrorCode PetscSFComputeDegreeEnd(PetscSF sf,const PetscInt **degree) 131695fce210SBarry Smith { 131795fce210SBarry Smith PetscErrorCode ierr; 131895fce210SBarry Smith 131995fce210SBarry Smith PetscFunctionBegin; 132095fce210SBarry Smith PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 132195fce210SBarry Smith PetscSFCheckGraphSet(sf,1); 132229046d53SLisandro Dalcin PetscValidPointer(degree,2); 132395fce210SBarry Smith if (!sf->degreeknown) { 132429046d53SLisandro Dalcin if (!sf->degreetmp) SETERRQ(PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Must call PetscSFComputeDegreeBegin() before PetscSFComputeDegreeEnd()"); 1325dbd2ff41SBarry Smith ierr = PetscSFReduceEnd(sf,MPIU_INT,sf->degreetmp,sf->degree,MPI_SUM);CHKERRQ(ierr); 132695fce210SBarry Smith ierr = PetscFree(sf->degreetmp);CHKERRQ(ierr); 132795fce210SBarry Smith sf->degreeknown = PETSC_TRUE; 132895fce210SBarry Smith } 132995fce210SBarry Smith *degree = sf->degree; 133095fce210SBarry Smith PetscFunctionReturn(0); 133195fce210SBarry Smith } 133295fce210SBarry Smith 1333673100f5SVaclav Hapla 1334673100f5SVaclav Hapla /*@C 133566dfcd1aSVaclav Hapla PetscSFComputeMultiRootOriginalNumbering - Returns original numbering of multi-roots (roots of multi-SF returned by PetscSFGetMultiSF()). 133666dfcd1aSVaclav Hapla Each multi-root is assigned index of the corresponding original root. 1337673100f5SVaclav Hapla 1338673100f5SVaclav Hapla Collective 1339673100f5SVaclav Hapla 1340673100f5SVaclav Hapla Input Arguments: 1341673100f5SVaclav Hapla + sf - star forest 1342673100f5SVaclav Hapla - degree - degree of each root vertex, computed with PetscSFComputeDegreeBegin()/PetscSFComputeDegreeEnd() 1343673100f5SVaclav Hapla 1344673100f5SVaclav Hapla Output Arguments: 134566dfcd1aSVaclav Hapla + nMultiRoots - (optional) number of multi-roots (roots of multi-SF) 134666dfcd1aSVaclav Hapla - multiRootsOrigNumbering - original indices of multi-roots; length of this array is nMultiRoots 1347673100f5SVaclav Hapla 1348673100f5SVaclav Hapla Level: developer 1349673100f5SVaclav Hapla 1350ffe67aa5SVáclav Hapla Notes: 1351ffe67aa5SVáclav Hapla The returned array multiRootsOrigNumbering is newly allocated and should be destroyed with PetscFree() when no longer needed. 1352ffe67aa5SVáclav Hapla 1353673100f5SVaclav Hapla .seealso: PetscSFComputeDegreeBegin(), PetscSFComputeDegreeEnd(), PetscSFGetMultiSF() 1354673100f5SVaclav Hapla @*/ 135566dfcd1aSVaclav Hapla PetscErrorCode PetscSFComputeMultiRootOriginalNumbering(PetscSF sf, const PetscInt degree[], PetscInt *nMultiRoots, PetscInt *multiRootsOrigNumbering[]) 1356673100f5SVaclav Hapla { 1357673100f5SVaclav Hapla PetscSF msf; 1358673100f5SVaclav Hapla PetscInt i, j, k, nroots, nmroots; 1359673100f5SVaclav Hapla PetscErrorCode ierr; 1360673100f5SVaclav Hapla 1361673100f5SVaclav Hapla PetscFunctionBegin; 1362673100f5SVaclav Hapla PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 1363673100f5SVaclav Hapla ierr = PetscSFGetGraph(sf, &nroots, NULL, NULL, NULL);CHKERRQ(ierr); 136429328920SVaclav Hapla if (nroots) PetscValidIntPointer(degree,2); 136566dfcd1aSVaclav Hapla if (nMultiRoots) PetscValidIntPointer(nMultiRoots,3); 136666dfcd1aSVaclav Hapla PetscValidPointer(multiRootsOrigNumbering,4); 1367673100f5SVaclav Hapla ierr = PetscSFGetMultiSF(sf,&msf);CHKERRQ(ierr); 1368673100f5SVaclav Hapla ierr = PetscSFGetGraph(msf, &nmroots, NULL, NULL, NULL);CHKERRQ(ierr); 136966dfcd1aSVaclav Hapla ierr = PetscMalloc1(nmroots, multiRootsOrigNumbering);CHKERRQ(ierr); 1370673100f5SVaclav Hapla for (i=0,j=0,k=0; i<nroots; i++) { 1371673100f5SVaclav Hapla if (!degree[i]) continue; 1372673100f5SVaclav Hapla for (j=0; j<degree[i]; j++,k++) { 137366dfcd1aSVaclav Hapla (*multiRootsOrigNumbering)[k] = i; 1374673100f5SVaclav Hapla } 1375673100f5SVaclav Hapla } 1376673100f5SVaclav Hapla #if defined(PETSC_USE_DEBUG) 1377673100f5SVaclav Hapla if (PetscUnlikely(k != nmroots)) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_PLIB,"sanity check fail"); 1378673100f5SVaclav Hapla #endif 137966dfcd1aSVaclav Hapla if (nMultiRoots) *nMultiRoots = nmroots; 1380673100f5SVaclav Hapla PetscFunctionReturn(0); 1381673100f5SVaclav Hapla } 1382673100f5SVaclav Hapla 138395fce210SBarry Smith /*@C 138495fce210SBarry Smith PetscSFFetchAndOpBegin - begin operation that fetches values from root and updates atomically by applying operation using my leaf value, to be completed with PetscSFFetchAndOpEnd() 138595fce210SBarry Smith 138695fce210SBarry Smith Collective 138795fce210SBarry Smith 138895fce210SBarry Smith Input Arguments: 138995fce210SBarry Smith + sf - star forest 139095fce210SBarry Smith . unit - data type 139195fce210SBarry Smith . leafdata - leaf values to use in reduction 139295fce210SBarry Smith - op - operation to use for reduction 139395fce210SBarry Smith 139495fce210SBarry Smith Output Arguments: 139595fce210SBarry Smith + rootdata - root values to be updated, input state is seen by first process to perform an update 139695fce210SBarry Smith - leafupdate - state at each leaf's respective root immediately prior to my atomic update 139795fce210SBarry Smith 139895fce210SBarry Smith Level: advanced 139995fce210SBarry Smith 140095fce210SBarry Smith Note: 140195fce210SBarry Smith The update is only atomic at the granularity provided by the hardware. Different roots referenced by the same process 140295fce210SBarry Smith might be updated in a different order. Furthermore, if a composite type is used for the unit datatype, atomicity is 140395fce210SBarry Smith not guaranteed across the whole vertex. Therefore, this function is mostly only used with primitive types such as 140495fce210SBarry Smith integers. 140595fce210SBarry Smith 140695fce210SBarry Smith .seealso: PetscSFComputeDegreeBegin(), PetscSFReduceBegin(), PetscSFSetGraph() 140795fce210SBarry Smith @*/ 140895fce210SBarry Smith PetscErrorCode PetscSFFetchAndOpBegin(PetscSF sf,MPI_Datatype unit,void *rootdata,const void *leafdata,void *leafupdate,MPI_Op op) 140995fce210SBarry Smith { 141095fce210SBarry Smith PetscErrorCode ierr; 141195fce210SBarry Smith 141295fce210SBarry Smith PetscFunctionBegin; 141395fce210SBarry Smith PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 141495fce210SBarry Smith ierr = PetscSFSetUp(sf);CHKERRQ(ierr); 141529046d53SLisandro Dalcin ierr = PetscLogEventBegin(PETSCSF_FetchAndOpBegin,sf,0,0,0);CHKERRQ(ierr); 141695fce210SBarry Smith ierr = (*sf->ops->FetchAndOpBegin)(sf,unit,rootdata,leafdata,leafupdate,op);CHKERRQ(ierr); 1417563ffbabSMatthew G. Knepley ierr = PetscLogEventEnd(PETSCSF_FetchAndOpBegin,sf,0,0,0);CHKERRQ(ierr); 141895fce210SBarry Smith PetscFunctionReturn(0); 141995fce210SBarry Smith } 142095fce210SBarry Smith 142195fce210SBarry Smith /*@C 142295fce210SBarry Smith PetscSFFetchAndOpEnd - end operation started in matching call to PetscSFFetchAndOpBegin() to fetch values from roots and update atomically by applying operation using my leaf value 142395fce210SBarry Smith 142495fce210SBarry Smith Collective 142595fce210SBarry Smith 142695fce210SBarry Smith Input Arguments: 142795fce210SBarry Smith + sf - star forest 142895fce210SBarry Smith . unit - data type 142995fce210SBarry Smith . leafdata - leaf values to use in reduction 143095fce210SBarry Smith - op - operation to use for reduction 143195fce210SBarry Smith 143295fce210SBarry Smith Output Arguments: 143395fce210SBarry Smith + rootdata - root values to be updated, input state is seen by first process to perform an update 143495fce210SBarry Smith - leafupdate - state at each leaf's respective root immediately prior to my atomic update 143595fce210SBarry Smith 143695fce210SBarry Smith Level: advanced 143795fce210SBarry Smith 143895fce210SBarry Smith .seealso: PetscSFComputeDegreeEnd(), PetscSFReduceEnd(), PetscSFSetGraph() 143995fce210SBarry Smith @*/ 144095fce210SBarry Smith PetscErrorCode PetscSFFetchAndOpEnd(PetscSF sf,MPI_Datatype unit,void *rootdata,const void *leafdata,void *leafupdate,MPI_Op op) 144195fce210SBarry Smith { 144295fce210SBarry Smith PetscErrorCode ierr; 144395fce210SBarry Smith 144495fce210SBarry Smith PetscFunctionBegin; 144595fce210SBarry Smith PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 144695fce210SBarry Smith ierr = PetscSFSetUp(sf);CHKERRQ(ierr); 144729046d53SLisandro Dalcin ierr = PetscLogEventBegin(PETSCSF_FetchAndOpEnd,sf,0,0,0);CHKERRQ(ierr); 144895fce210SBarry Smith ierr = (*sf->ops->FetchAndOpEnd)(sf,unit,rootdata,leafdata,leafupdate,op);CHKERRQ(ierr); 1449563ffbabSMatthew G. Knepley ierr = PetscLogEventEnd(PETSCSF_FetchAndOpEnd,sf,0,0,0);CHKERRQ(ierr); 145095fce210SBarry Smith PetscFunctionReturn(0); 145195fce210SBarry Smith } 145295fce210SBarry Smith 145395fce210SBarry Smith /*@C 145495fce210SBarry Smith PetscSFGatherBegin - begin pointwise gather of all leaves into multi-roots, to be completed with PetscSFGatherEnd() 145595fce210SBarry Smith 145695fce210SBarry Smith Collective 145795fce210SBarry Smith 145895fce210SBarry Smith Input Arguments: 145995fce210SBarry Smith + sf - star forest 146095fce210SBarry Smith . unit - data type 146195fce210SBarry Smith - leafdata - leaf data to gather to roots 146295fce210SBarry Smith 146395fce210SBarry Smith Output Argument: 146495fce210SBarry Smith . multirootdata - root buffer to gather into, amount of space per root is equal to its degree 146595fce210SBarry Smith 146695fce210SBarry Smith Level: intermediate 146795fce210SBarry Smith 146895fce210SBarry Smith .seealso: PetscSFComputeDegreeBegin(), PetscSFScatterBegin() 146995fce210SBarry Smith @*/ 147095fce210SBarry Smith PetscErrorCode PetscSFGatherBegin(PetscSF sf,MPI_Datatype unit,const void *leafdata,void *multirootdata) 147195fce210SBarry Smith { 147295fce210SBarry Smith PetscErrorCode ierr; 147395fce210SBarry Smith PetscSF multi; 147495fce210SBarry Smith 147595fce210SBarry Smith PetscFunctionBegin; 147695fce210SBarry Smith PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 147729046d53SLisandro Dalcin ierr = PetscSFSetUp(sf);CHKERRQ(ierr); 147895fce210SBarry Smith ierr = PetscSFGetMultiSF(sf,&multi);CHKERRQ(ierr); 14798bfbc91cSJed Brown ierr = PetscSFReduceBegin(multi,unit,leafdata,multirootdata,MPIU_REPLACE);CHKERRQ(ierr); 148095fce210SBarry Smith PetscFunctionReturn(0); 148195fce210SBarry Smith } 148295fce210SBarry Smith 148395fce210SBarry Smith /*@C 148495fce210SBarry Smith PetscSFGatherEnd - ends pointwise gather operation that was started with PetscSFGatherBegin() 148595fce210SBarry Smith 148695fce210SBarry Smith Collective 148795fce210SBarry Smith 148895fce210SBarry Smith Input Arguments: 148995fce210SBarry Smith + sf - star forest 149095fce210SBarry Smith . unit - data type 149195fce210SBarry Smith - leafdata - leaf data to gather to roots 149295fce210SBarry Smith 149395fce210SBarry Smith Output Argument: 149495fce210SBarry Smith . multirootdata - root buffer to gather into, amount of space per root is equal to its degree 149595fce210SBarry Smith 149695fce210SBarry Smith Level: intermediate 149795fce210SBarry Smith 149895fce210SBarry Smith .seealso: PetscSFComputeDegreeEnd(), PetscSFScatterEnd() 149995fce210SBarry Smith @*/ 150095fce210SBarry Smith PetscErrorCode PetscSFGatherEnd(PetscSF sf,MPI_Datatype unit,const void *leafdata,void *multirootdata) 150195fce210SBarry Smith { 150295fce210SBarry Smith PetscErrorCode ierr; 150395fce210SBarry Smith PetscSF multi; 150495fce210SBarry Smith 150595fce210SBarry Smith PetscFunctionBegin; 150695fce210SBarry Smith PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 150795fce210SBarry Smith ierr = PetscSFSetUp(sf);CHKERRQ(ierr); 150895fce210SBarry Smith ierr = PetscSFGetMultiSF(sf,&multi);CHKERRQ(ierr); 15098bfbc91cSJed Brown ierr = PetscSFReduceEnd(multi,unit,leafdata,multirootdata,MPIU_REPLACE);CHKERRQ(ierr); 151095fce210SBarry Smith PetscFunctionReturn(0); 151195fce210SBarry Smith } 151295fce210SBarry Smith 151395fce210SBarry Smith /*@C 151495fce210SBarry Smith PetscSFScatterBegin - begin pointwise scatter operation from multi-roots to leaves, to be completed with PetscSFScatterEnd() 151595fce210SBarry Smith 151695fce210SBarry Smith Collective 151795fce210SBarry Smith 151895fce210SBarry Smith Input Arguments: 151995fce210SBarry Smith + sf - star forest 152095fce210SBarry Smith . unit - data type 152195fce210SBarry Smith - multirootdata - root buffer to send to each leaf, one unit of data per leaf 152295fce210SBarry Smith 152395fce210SBarry Smith Output Argument: 152495fce210SBarry Smith . leafdata - leaf data to be update with personal data from each respective root 152595fce210SBarry Smith 152695fce210SBarry Smith Level: intermediate 152795fce210SBarry Smith 152895fce210SBarry Smith .seealso: PetscSFComputeDegreeBegin(), PetscSFScatterBegin() 152995fce210SBarry Smith @*/ 153095fce210SBarry Smith PetscErrorCode PetscSFScatterBegin(PetscSF sf,MPI_Datatype unit,const void *multirootdata,void *leafdata) 153195fce210SBarry Smith { 153295fce210SBarry Smith PetscErrorCode ierr; 153395fce210SBarry Smith PetscSF multi; 153495fce210SBarry Smith 153595fce210SBarry Smith PetscFunctionBegin; 153695fce210SBarry Smith PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 153795fce210SBarry Smith ierr = PetscSFSetUp(sf);CHKERRQ(ierr); 153895fce210SBarry Smith ierr = PetscSFGetMultiSF(sf,&multi);CHKERRQ(ierr); 153995fce210SBarry Smith ierr = PetscSFBcastBegin(multi,unit,multirootdata,leafdata);CHKERRQ(ierr); 154095fce210SBarry Smith PetscFunctionReturn(0); 154195fce210SBarry Smith } 154295fce210SBarry Smith 154395fce210SBarry Smith /*@C 154495fce210SBarry Smith PetscSFScatterEnd - ends pointwise scatter operation that was started with PetscSFScatterBegin() 154595fce210SBarry Smith 154695fce210SBarry Smith Collective 154795fce210SBarry Smith 154895fce210SBarry Smith Input Arguments: 154995fce210SBarry Smith + sf - star forest 155095fce210SBarry Smith . unit - data type 155195fce210SBarry Smith - multirootdata - root buffer to send to each leaf, one unit of data per leaf 155295fce210SBarry Smith 155395fce210SBarry Smith Output Argument: 155495fce210SBarry Smith . leafdata - leaf data to be update with personal data from each respective root 155595fce210SBarry Smith 155695fce210SBarry Smith Level: intermediate 155795fce210SBarry Smith 155895fce210SBarry Smith .seealso: PetscSFComputeDegreeEnd(), PetscSFScatterEnd() 155995fce210SBarry Smith @*/ 156095fce210SBarry Smith PetscErrorCode PetscSFScatterEnd(PetscSF sf,MPI_Datatype unit,const void *multirootdata,void *leafdata) 156195fce210SBarry Smith { 156295fce210SBarry Smith PetscErrorCode ierr; 156395fce210SBarry Smith PetscSF multi; 156495fce210SBarry Smith 156595fce210SBarry Smith PetscFunctionBegin; 156695fce210SBarry Smith PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 156795fce210SBarry Smith ierr = PetscSFSetUp(sf);CHKERRQ(ierr); 156895fce210SBarry Smith ierr = PetscSFGetMultiSF(sf,&multi);CHKERRQ(ierr); 156995fce210SBarry Smith ierr = PetscSFBcastEnd(multi,unit,multirootdata,leafdata);CHKERRQ(ierr); 157095fce210SBarry Smith PetscFunctionReturn(0); 157195fce210SBarry Smith } 1572a7b3aa13SAta Mesgarnejad 1573a7b3aa13SAta Mesgarnejad /*@ 1574a7b3aa13SAta Mesgarnejad PetscSFCompose - Compose a new PetscSF equivalent to action to PetscSFs 1575a7b3aa13SAta Mesgarnejad 1576a7b3aa13SAta Mesgarnejad Input Parameters: 1577a7b3aa13SAta Mesgarnejad + sfA - The first PetscSF 1578a7b3aa13SAta Mesgarnejad - sfB - The second PetscSF 1579a7b3aa13SAta Mesgarnejad 1580a7b3aa13SAta Mesgarnejad Output Parameters: 1581a7b3aa13SAta Mesgarnejad . sfBA - equvalent PetscSF for applying A then B 1582a7b3aa13SAta Mesgarnejad 1583a7b3aa13SAta Mesgarnejad Level: developer 1584a7b3aa13SAta Mesgarnejad 1585a7b3aa13SAta Mesgarnejad .seealso: PetscSF, PetscSFGetGraph(), PetscSFSetGraph() 1586a7b3aa13SAta Mesgarnejad @*/ 1587a7b3aa13SAta Mesgarnejad PetscErrorCode PetscSFCompose(PetscSF sfA, PetscSF sfB, PetscSF *sfBA) 1588a7b3aa13SAta Mesgarnejad { 1589a7b3aa13SAta Mesgarnejad MPI_Comm comm; 1590a7b3aa13SAta Mesgarnejad const PetscSFNode *remotePointsA, *remotePointsB; 1591a7b3aa13SAta Mesgarnejad PetscSFNode *remotePointsBA; 1592a7b3aa13SAta Mesgarnejad const PetscInt *localPointsA, *localPointsB; 1593a7b3aa13SAta Mesgarnejad PetscInt numRootsA, numLeavesA, numRootsB, numLeavesB; 1594a7b3aa13SAta Mesgarnejad PetscErrorCode ierr; 1595a7b3aa13SAta Mesgarnejad 1596a7b3aa13SAta Mesgarnejad PetscFunctionBegin; 1597a7b3aa13SAta Mesgarnejad PetscValidHeaderSpecific(sfA, PETSCSF_CLASSID, 1); 159829046d53SLisandro Dalcin PetscSFCheckGraphSet(sfA, 1); 159929046d53SLisandro Dalcin PetscValidHeaderSpecific(sfB, PETSCSF_CLASSID, 2); 160029046d53SLisandro Dalcin PetscSFCheckGraphSet(sfB, 2); 160129046d53SLisandro Dalcin PetscValidPointer(sfBA, 3); 1602a7b3aa13SAta Mesgarnejad ierr = PetscObjectGetComm((PetscObject) sfA, &comm);CHKERRQ(ierr); 1603a7b3aa13SAta Mesgarnejad ierr = PetscSFGetGraph(sfA, &numRootsA, &numLeavesA, &localPointsA, &remotePointsA);CHKERRQ(ierr); 1604a7b3aa13SAta Mesgarnejad ierr = PetscSFGetGraph(sfB, &numRootsB, &numLeavesB, &localPointsB, &remotePointsB);CHKERRQ(ierr); 1605a7b3aa13SAta Mesgarnejad ierr = PetscMalloc1(numLeavesB, &remotePointsBA);CHKERRQ(ierr); 1606a7b3aa13SAta Mesgarnejad ierr = PetscSFBcastBegin(sfB, MPIU_2INT, remotePointsA, remotePointsBA);CHKERRQ(ierr); 1607a7b3aa13SAta Mesgarnejad ierr = PetscSFBcastEnd(sfB, MPIU_2INT, remotePointsA, remotePointsBA);CHKERRQ(ierr); 1608a7b3aa13SAta Mesgarnejad ierr = PetscSFCreate(comm, sfBA);CHKERRQ(ierr); 1609a7b3aa13SAta Mesgarnejad ierr = PetscSFSetGraph(*sfBA, numRootsA, numLeavesB, localPointsB, PETSC_COPY_VALUES, remotePointsBA, PETSC_OWN_POINTER);CHKERRQ(ierr); 1610a7b3aa13SAta Mesgarnejad PetscFunctionReturn(0); 1611a7b3aa13SAta Mesgarnejad } 1612