1af0996ceSBarry Smith #include <petsc/private/sfimpl.h> /*I "petscsf.h" I*/ 2c4e6a40aSLawrence Mitchell #include <petsc/private/hashseti.h> 353dd6d7dSJunchao Zhang #include <petsc/private/viewerimpl.h> 495fce210SBarry Smith #include <petscctable.h> 595fce210SBarry Smith 67fd2d3dbSJunchao Zhang #if defined(PETSC_HAVE_CUDA) 77fd2d3dbSJunchao Zhang #include <cuda_runtime.h> 87fd2d3dbSJunchao Zhang #endif 97fd2d3dbSJunchao Zhang 107fd2d3dbSJunchao Zhang #if defined(PETSC_HAVE_HIP) 117fd2d3dbSJunchao Zhang #include <hip/hip_runtime.h> 127fd2d3dbSJunchao Zhang #endif 137fd2d3dbSJunchao Zhang 142abc8c78SJacob Faibussowitsch #if defined(PETSC_CLANG_STATIC_ANALYZER) 152abc8c78SJacob Faibussowitsch void PetscSFCheckGraphSet(PetscSF, int); 162abc8c78SJacob Faibussowitsch #else 1795fce210SBarry Smith #if defined(PETSC_USE_DEBUG) 187a46b595SBarry Smith #define PetscSFCheckGraphSet(sf, arg) PetscCheck((sf)->graphset, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Must call PetscSFSetGraph() or PetscSFSetGraphWithPattern() on argument %d \"%s\" before %s()", (arg), #sf, PETSC_FUNCTION_NAME); 1995fce210SBarry Smith #else 209371c9d4SSatish Balay #define PetscSFCheckGraphSet(sf, arg) \ 219371c9d4SSatish Balay do { \ 229371c9d4SSatish Balay } while (0) 2395fce210SBarry Smith #endif 242abc8c78SJacob Faibussowitsch #endif 2595fce210SBarry Smith 264c8fdceaSLisandro Dalcin const char *const PetscSFDuplicateOptions[] = {"CONFONLY", "RANKS", "GRAPH", "PetscSFDuplicateOption", "PETSCSF_DUPLICATE_", NULL}; 2795fce210SBarry Smith 288af6ec1cSBarry Smith /*@ 2995fce210SBarry Smith PetscSFCreate - create a star forest communication context 3095fce210SBarry Smith 31d083f849SBarry Smith Collective 3295fce210SBarry Smith 334165533cSJose E. Roman Input Parameter: 3495fce210SBarry Smith . comm - communicator on which the star forest will operate 3595fce210SBarry Smith 364165533cSJose E. Roman Output Parameter: 3795fce210SBarry Smith . sf - new star forest context 3895fce210SBarry Smith 39dd5b3ca6SJunchao Zhang Options Database Keys: 40cab54364SBarry Smith . -sf_type type - value of type may be 41cab54364SBarry Smith .vb 42cab54364SBarry Smith basic -Use MPI persistent Isend/Irecv for communication (Default) 43cab54364SBarry Smith window -Use MPI-3 one-sided window for communication 44cab54364SBarry Smith neighbor -Use MPI-3 neighborhood collectives for communication 45cab54364SBarry Smith .ve 46dd5b3ca6SJunchao Zhang 4795fce210SBarry Smith Level: intermediate 4895fce210SBarry Smith 49cab54364SBarry Smith Note: 50cab54364SBarry Smith When one knows the communication graph is one of the predefined graph, such as `MPI_Alltoall()`, `MPI_Allgatherv()`, 51cab54364SBarry Smith `MPI_Gatherv()`, one can create a `PetscSF` and then set its graph with `PetscSFSetGraphWithPattern()`. These special 52cab54364SBarry Smith `SF`s are optimized and they have better performance than general `SF`s. 53dd5b3ca6SJunchao Zhang 54cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFSetGraph()`, `PetscSFSetGraphWithPattern()`, `PetscSFDestroy()` 5595fce210SBarry Smith @*/ 56d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFCreate(MPI_Comm comm, PetscSF *sf) 57d71ae5a4SJacob Faibussowitsch { 5895fce210SBarry Smith PetscSF b; 5995fce210SBarry Smith 6095fce210SBarry Smith PetscFunctionBegin; 6195fce210SBarry Smith PetscValidPointer(sf, 2); 629566063dSJacob Faibussowitsch PetscCall(PetscSFInitializePackage()); 6395fce210SBarry Smith 649566063dSJacob Faibussowitsch PetscCall(PetscHeaderCreate(b, PETSCSF_CLASSID, "PetscSF", "Star Forest", "PetscSF", comm, PetscSFDestroy, PetscSFView)); 6595fce210SBarry Smith 6695fce210SBarry Smith b->nroots = -1; 6795fce210SBarry Smith b->nleaves = -1; 6829046d53SLisandro Dalcin b->minleaf = PETSC_MAX_INT; 6929046d53SLisandro Dalcin b->maxleaf = PETSC_MIN_INT; 7095fce210SBarry Smith b->nranks = -1; 7195fce210SBarry Smith b->rankorder = PETSC_TRUE; 7295fce210SBarry Smith b->ingroup = MPI_GROUP_NULL; 7395fce210SBarry Smith b->outgroup = MPI_GROUP_NULL; 7495fce210SBarry Smith b->graphset = PETSC_FALSE; 7520c24465SJunchao Zhang #if defined(PETSC_HAVE_DEVICE) 7620c24465SJunchao Zhang b->use_gpu_aware_mpi = use_gpu_aware_mpi; 7720c24465SJunchao Zhang b->use_stream_aware_mpi = PETSC_FALSE; 7871438e86SJunchao Zhang b->unknown_input_stream = PETSC_FALSE; 7927f636e8SJunchao Zhang #if defined(PETSC_HAVE_KOKKOS) /* Prefer kokkos over cuda*/ 8020c24465SJunchao Zhang b->backend = PETSCSF_BACKEND_KOKKOS; 8127f636e8SJunchao Zhang #elif defined(PETSC_HAVE_CUDA) 8227f636e8SJunchao Zhang b->backend = PETSCSF_BACKEND_CUDA; 8359af0bd3SScott Kruger #elif defined(PETSC_HAVE_HIP) 8459af0bd3SScott Kruger b->backend = PETSCSF_BACKEND_HIP; 8520c24465SJunchao Zhang #endif 8671438e86SJunchao Zhang 8771438e86SJunchao Zhang #if defined(PETSC_HAVE_NVSHMEM) 8871438e86SJunchao Zhang b->use_nvshmem = PETSC_FALSE; /* Default is not to try NVSHMEM */ 8971438e86SJunchao Zhang b->use_nvshmem_get = PETSC_FALSE; /* Default is to use nvshmem_put based protocol */ 909566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetBool(NULL, NULL, "-use_nvshmem", &b->use_nvshmem, NULL)); 919566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetBool(NULL, NULL, "-use_nvshmem_get", &b->use_nvshmem_get, NULL)); 9271438e86SJunchao Zhang #endif 9320c24465SJunchao Zhang #endif 9460c22052SBarry Smith b->vscat.from_n = -1; 9560c22052SBarry Smith b->vscat.to_n = -1; 9660c22052SBarry Smith b->vscat.unit = MPIU_SCALAR; 9795fce210SBarry Smith *sf = b; 9895fce210SBarry Smith PetscFunctionReturn(0); 9995fce210SBarry Smith } 10095fce210SBarry Smith 10129046d53SLisandro Dalcin /*@ 10295fce210SBarry Smith PetscSFReset - Reset a star forest so that different sizes or neighbors can be used 10395fce210SBarry Smith 10495fce210SBarry Smith Collective 10595fce210SBarry Smith 1064165533cSJose E. Roman Input Parameter: 10795fce210SBarry Smith . sf - star forest 10895fce210SBarry Smith 10995fce210SBarry Smith Level: advanced 11095fce210SBarry Smith 111cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFCreate()`, `PetscSFSetGraph()`, `PetscSFDestroy()` 11295fce210SBarry Smith @*/ 113d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFReset(PetscSF sf) 114d71ae5a4SJacob Faibussowitsch { 11595fce210SBarry Smith PetscFunctionBegin; 11695fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 117dbbe0bcdSBarry Smith PetscTryTypeMethod(sf, Reset); 11829046d53SLisandro Dalcin sf->nroots = -1; 11929046d53SLisandro Dalcin sf->nleaves = -1; 12029046d53SLisandro Dalcin sf->minleaf = PETSC_MAX_INT; 12129046d53SLisandro Dalcin sf->maxleaf = PETSC_MIN_INT; 12295fce210SBarry Smith sf->mine = NULL; 12395fce210SBarry Smith sf->remote = NULL; 12429046d53SLisandro Dalcin sf->graphset = PETSC_FALSE; 1259566063dSJacob Faibussowitsch PetscCall(PetscFree(sf->mine_alloc)); 1269566063dSJacob Faibussowitsch PetscCall(PetscFree(sf->remote_alloc)); 12721c688dcSJed Brown sf->nranks = -1; 1289566063dSJacob Faibussowitsch PetscCall(PetscFree4(sf->ranks, sf->roffset, sf->rmine, sf->rremote)); 12929046d53SLisandro Dalcin sf->degreeknown = PETSC_FALSE; 1309566063dSJacob Faibussowitsch PetscCall(PetscFree(sf->degree)); 1319566063dSJacob Faibussowitsch if (sf->ingroup != MPI_GROUP_NULL) PetscCallMPI(MPI_Group_free(&sf->ingroup)); 1329566063dSJacob Faibussowitsch if (sf->outgroup != MPI_GROUP_NULL) PetscCallMPI(MPI_Group_free(&sf->outgroup)); 133013b3241SStefano Zampini if (sf->multi) sf->multi->multi = NULL; 1349566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf->multi)); 1359566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&sf->map)); 13671438e86SJunchao Zhang 13771438e86SJunchao Zhang #if defined(PETSC_HAVE_DEVICE) 1389566063dSJacob Faibussowitsch for (PetscInt i = 0; i < 2; i++) PetscCall(PetscSFFree(sf, PETSC_MEMTYPE_DEVICE, sf->rmine_d[i])); 13971438e86SJunchao Zhang #endif 14071438e86SJunchao Zhang 14195fce210SBarry Smith sf->setupcalled = PETSC_FALSE; 14295fce210SBarry Smith PetscFunctionReturn(0); 14395fce210SBarry Smith } 14495fce210SBarry Smith 14595fce210SBarry Smith /*@C 146cab54364SBarry Smith PetscSFSetType - Set the `PetscSF` communication implementation 14795fce210SBarry Smith 148cab54364SBarry Smith Collective on sf 14995fce210SBarry Smith 15095fce210SBarry Smith Input Parameters: 151cab54364SBarry Smith + sf - the `PetscSF` context 15295fce210SBarry Smith - type - a known method 153cab54364SBarry Smith .vb 154cab54364SBarry Smith PETSCSFWINDOW - MPI-2/3 one-sided 155cab54364SBarry Smith PETSCSFBASIC - basic implementation using MPI-1 two-sided 156cab54364SBarry Smith .ve 15795fce210SBarry Smith 15895fce210SBarry Smith Options Database Key: 159cab54364SBarry Smith . -sf_type <type> - Sets the method; for example basic or window use -help for a list of available methods (for instance, window, basic, neighbor) 160cab54364SBarry Smith 161cab54364SBarry Smith Level: intermediate 16295fce210SBarry Smith 16395fce210SBarry Smith Notes: 16495fce210SBarry Smith See "include/petscsf.h" for available methods (for instance) 16595fce210SBarry Smith 166db781477SPatrick Sanan .seealso: `PetscSFType`, `PetscSFCreate()` 16795fce210SBarry Smith @*/ 168d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFSetType(PetscSF sf, PetscSFType type) 169d71ae5a4SJacob Faibussowitsch { 17095fce210SBarry Smith PetscBool match; 1715f80ce2aSJacob Faibussowitsch PetscErrorCode (*r)(PetscSF); 17295fce210SBarry Smith 17395fce210SBarry Smith PetscFunctionBegin; 17495fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 17595fce210SBarry Smith PetscValidCharPointer(type, 2); 17695fce210SBarry Smith 1779566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)sf, type, &match)); 17895fce210SBarry Smith if (match) PetscFunctionReturn(0); 17995fce210SBarry Smith 1809566063dSJacob Faibussowitsch PetscCall(PetscFunctionListFind(PetscSFList, type, &r)); 18128b400f6SJacob Faibussowitsch PetscCheck(r, PETSC_COMM_SELF, PETSC_ERR_ARG_UNKNOWN_TYPE, "Unable to find requested PetscSF type %s", type); 18229046d53SLisandro Dalcin /* Destroy the previous PetscSF implementation context */ 183dbbe0bcdSBarry Smith PetscTryTypeMethod(sf, Destroy); 1849566063dSJacob Faibussowitsch PetscCall(PetscMemzero(sf->ops, sizeof(*sf->ops))); 1859566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)sf, type)); 1869566063dSJacob Faibussowitsch PetscCall((*r)(sf)); 18795fce210SBarry Smith PetscFunctionReturn(0); 18895fce210SBarry Smith } 18995fce210SBarry Smith 19029046d53SLisandro Dalcin /*@C 191cab54364SBarry Smith PetscSFGetType - Get the `PetscSF` communication implementation 19229046d53SLisandro Dalcin 19329046d53SLisandro Dalcin Not Collective 19429046d53SLisandro Dalcin 19529046d53SLisandro Dalcin Input Parameter: 196cab54364SBarry Smith . sf - the `PetscSF` context 19729046d53SLisandro Dalcin 19829046d53SLisandro Dalcin Output Parameter: 199cab54364SBarry Smith . type - the `PetscSF` type name 20029046d53SLisandro Dalcin 20129046d53SLisandro Dalcin Level: intermediate 20229046d53SLisandro Dalcin 203cab54364SBarry Smith .seealso: `PetscSFType`, `PetscSFSetType()`, `PetscSFCreate()` 20429046d53SLisandro Dalcin @*/ 205d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFGetType(PetscSF sf, PetscSFType *type) 206d71ae5a4SJacob Faibussowitsch { 20729046d53SLisandro Dalcin PetscFunctionBegin; 20829046d53SLisandro Dalcin PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 20929046d53SLisandro Dalcin PetscValidPointer(type, 2); 21029046d53SLisandro Dalcin *type = ((PetscObject)sf)->type_name; 21129046d53SLisandro Dalcin PetscFunctionReturn(0); 21229046d53SLisandro Dalcin } 21329046d53SLisandro Dalcin 2141fb7b255SJunchao Zhang /*@C 21595fce210SBarry Smith PetscSFDestroy - destroy star forest 21695fce210SBarry Smith 21795fce210SBarry Smith Collective 21895fce210SBarry Smith 2194165533cSJose E. Roman Input Parameter: 22095fce210SBarry Smith . sf - address of star forest 22195fce210SBarry Smith 22295fce210SBarry Smith Level: intermediate 22395fce210SBarry Smith 224cab54364SBarry Smith .seealso: `PetscSFType`, `PetscSFCreate()`, `PetscSFReset()` 22595fce210SBarry Smith @*/ 226d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFDestroy(PetscSF *sf) 227d71ae5a4SJacob Faibussowitsch { 22895fce210SBarry Smith PetscFunctionBegin; 22995fce210SBarry Smith if (!*sf) PetscFunctionReturn(0); 23095fce210SBarry Smith PetscValidHeaderSpecific((*sf), PETSCSF_CLASSID, 1); 2319371c9d4SSatish Balay if (--((PetscObject)(*sf))->refct > 0) { 2329371c9d4SSatish Balay *sf = NULL; 2339371c9d4SSatish Balay PetscFunctionReturn(0); 2349371c9d4SSatish Balay } 2359566063dSJacob Faibussowitsch PetscCall(PetscSFReset(*sf)); 236dbbe0bcdSBarry Smith PetscTryTypeMethod((*sf), Destroy); 2379566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&(*sf)->vscat.lsf)); 2389566063dSJacob Faibussowitsch if ((*sf)->vscat.bs > 1) PetscCallMPI(MPI_Type_free(&(*sf)->vscat.unit)); 2399566063dSJacob Faibussowitsch PetscCall(PetscHeaderDestroy(sf)); 24095fce210SBarry Smith PetscFunctionReturn(0); 24195fce210SBarry Smith } 24295fce210SBarry Smith 243d71ae5a4SJacob Faibussowitsch static PetscErrorCode PetscSFCheckGraphValid_Private(PetscSF sf) 244d71ae5a4SJacob Faibussowitsch { 245c4e6a40aSLawrence Mitchell PetscInt i, nleaves; 246c4e6a40aSLawrence Mitchell PetscMPIInt size; 247c4e6a40aSLawrence Mitchell const PetscInt *ilocal; 248c4e6a40aSLawrence Mitchell const PetscSFNode *iremote; 249c4e6a40aSLawrence Mitchell 250c4e6a40aSLawrence Mitchell PetscFunctionBegin; 25176bd3646SJed Brown if (!sf->graphset || !PetscDefined(USE_DEBUG)) PetscFunctionReturn(0); 2529566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sf, NULL, &nleaves, &ilocal, &iremote)); 2539566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)sf), &size)); 254c4e6a40aSLawrence Mitchell for (i = 0; i < nleaves; i++) { 255c4e6a40aSLawrence Mitchell const PetscInt rank = iremote[i].rank; 256c4e6a40aSLawrence Mitchell const PetscInt remote = iremote[i].index; 257c4e6a40aSLawrence Mitchell const PetscInt leaf = ilocal ? ilocal[i] : i; 258c9cc58a2SBarry Smith PetscCheck(rank >= 0 && rank < size, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Provided rank (%" PetscInt_FMT ") for remote %" PetscInt_FMT " is invalid, should be in [0, %d)", rank, i, size); 25908401ef6SPierre Jolivet PetscCheck(remote >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Provided index (%" PetscInt_FMT ") for remote %" PetscInt_FMT " is invalid, should be >= 0", remote, i); 26008401ef6SPierre Jolivet PetscCheck(leaf >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Provided location (%" PetscInt_FMT ") for leaf %" PetscInt_FMT " is invalid, should be >= 0", leaf, i); 261c4e6a40aSLawrence Mitchell } 262c4e6a40aSLawrence Mitchell PetscFunctionReturn(0); 263c4e6a40aSLawrence Mitchell } 264c4e6a40aSLawrence Mitchell 26595fce210SBarry Smith /*@ 26695fce210SBarry Smith PetscSFSetUp - set up communication structures 26795fce210SBarry Smith 26895fce210SBarry Smith Collective 26995fce210SBarry Smith 2704165533cSJose E. Roman Input Parameter: 27195fce210SBarry Smith . sf - star forest communication object 27295fce210SBarry Smith 27395fce210SBarry Smith Level: beginner 27495fce210SBarry Smith 275cab54364SBarry Smith .seealso: `PetscSFType`, `PetscSFSetFromOptions()`, `PetscSFSetType()` 27695fce210SBarry Smith @*/ 277d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFSetUp(PetscSF sf) 278d71ae5a4SJacob Faibussowitsch { 27995fce210SBarry Smith PetscFunctionBegin; 28029046d53SLisandro Dalcin PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 28129046d53SLisandro Dalcin PetscSFCheckGraphSet(sf, 1); 28295fce210SBarry Smith if (sf->setupcalled) PetscFunctionReturn(0); 2839566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(PETSCSF_SetUp, sf, 0, 0, 0)); 2849566063dSJacob Faibussowitsch PetscCall(PetscSFCheckGraphValid_Private(sf)); 2859566063dSJacob Faibussowitsch if (!((PetscObject)sf)->type_name) PetscCall(PetscSFSetType(sf, PETSCSFBASIC)); /* Zero all sf->ops */ 286dbbe0bcdSBarry Smith PetscTryTypeMethod(sf, SetUp); 28720c24465SJunchao Zhang #if defined(PETSC_HAVE_CUDA) 28820c24465SJunchao Zhang if (sf->backend == PETSCSF_BACKEND_CUDA) { 28971438e86SJunchao Zhang sf->ops->Malloc = PetscSFMalloc_CUDA; 29071438e86SJunchao Zhang sf->ops->Free = PetscSFFree_CUDA; 29120c24465SJunchao Zhang } 29220c24465SJunchao Zhang #endif 29359af0bd3SScott Kruger #if defined(PETSC_HAVE_HIP) 29459af0bd3SScott Kruger if (sf->backend == PETSCSF_BACKEND_HIP) { 29559af0bd3SScott Kruger sf->ops->Malloc = PetscSFMalloc_HIP; 29659af0bd3SScott Kruger sf->ops->Free = PetscSFFree_HIP; 29759af0bd3SScott Kruger } 29859af0bd3SScott Kruger #endif 29920c24465SJunchao Zhang 30059af0bd3SScott Kruger # 30120c24465SJunchao Zhang #if defined(PETSC_HAVE_KOKKOS) 30220c24465SJunchao Zhang if (sf->backend == PETSCSF_BACKEND_KOKKOS) { 30320c24465SJunchao Zhang sf->ops->Malloc = PetscSFMalloc_Kokkos; 30420c24465SJunchao Zhang sf->ops->Free = PetscSFFree_Kokkos; 30520c24465SJunchao Zhang } 30620c24465SJunchao Zhang #endif 3079566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(PETSCSF_SetUp, sf, 0, 0, 0)); 30895fce210SBarry Smith sf->setupcalled = PETSC_TRUE; 30995fce210SBarry Smith PetscFunctionReturn(0); 31095fce210SBarry Smith } 31195fce210SBarry Smith 3128af6ec1cSBarry Smith /*@ 313cab54364SBarry Smith PetscSFSetFromOptions - set `PetscSF` options using the options database 31495fce210SBarry Smith 31595fce210SBarry Smith Logically Collective 31695fce210SBarry Smith 3174165533cSJose E. Roman Input Parameter: 31895fce210SBarry Smith . sf - star forest 31995fce210SBarry Smith 32095fce210SBarry Smith Options Database Keys: 32160263706SJed Brown + -sf_type - implementation type, see PetscSFSetType() 32251ccb202SJunchao Zhang . -sf_rank_order - sort composite points for gathers and scatters in rank order, gathers are non-deterministic otherwise 323b85e67b7SJunchao Zhang . -sf_use_default_stream - Assume callers of SF computed the input root/leafdata with the default cuda stream. SF will also 324c2a741eeSJunchao Zhang use the default stream to process data. Therefore, no stream synchronization is needed between SF and its caller (default: true). 325c06a8e02SRichard Tran Mills If true, this option only works with -use_gpu_aware_mpi 1. 32620c24465SJunchao Zhang . -sf_use_stream_aware_mpi - Assume the underlying MPI is cuda-stream aware and SF won't sync streams for send/recv buffers passed to MPI (default: false). 327c06a8e02SRichard Tran Mills If true, this option only works with -use_gpu_aware_mpi 1. 32895fce210SBarry Smith 32959af0bd3SScott Kruger - -sf_backend cuda | hip | kokkos -Select the device backend SF uses. Currently SF has these backends: cuda, hip and Kokkos. 33059af0bd3SScott Kruger On CUDA (HIP) devices, one can choose cuda (hip) or kokkos with the default being kokkos. On other devices, 33120c24465SJunchao Zhang the only available is kokkos. 33220c24465SJunchao Zhang 33395fce210SBarry Smith Level: intermediate 334cab54364SBarry Smith 335cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFCreate()`, `PetscSFSetType()` 33695fce210SBarry Smith @*/ 337d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFSetFromOptions(PetscSF sf) 338d71ae5a4SJacob Faibussowitsch { 33995fce210SBarry Smith PetscSFType deft; 34095fce210SBarry Smith char type[256]; 34195fce210SBarry Smith PetscBool flg; 34295fce210SBarry Smith 34395fce210SBarry Smith PetscFunctionBegin; 34495fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 345d0609cedSBarry Smith PetscObjectOptionsBegin((PetscObject)sf); 34695fce210SBarry Smith deft = ((PetscObject)sf)->type_name ? ((PetscObject)sf)->type_name : PETSCSFBASIC; 3479566063dSJacob Faibussowitsch PetscCall(PetscOptionsFList("-sf_type", "PetscSF implementation type", "PetscSFSetType", PetscSFList, deft, type, sizeof(type), &flg)); 3489566063dSJacob Faibussowitsch PetscCall(PetscSFSetType(sf, flg ? type : deft)); 3499566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-sf_rank_order", "sort composite points for gathers and scatters in rank order, gathers are non-deterministic otherwise", "PetscSFSetRankOrder", sf->rankorder, &sf->rankorder, NULL)); 3507fd2d3dbSJunchao Zhang #if defined(PETSC_HAVE_DEVICE) 35120c24465SJunchao Zhang { 35220c24465SJunchao Zhang char backendstr[32] = {0}; 35359af0bd3SScott Kruger PetscBool isCuda = PETSC_FALSE, isHip = PETSC_FALSE, isKokkos = PETSC_FALSE, set; 35420c24465SJunchao Zhang /* Change the defaults set in PetscSFCreate() with command line options */ 355*d5b43468SJose E. Roman PetscCall(PetscOptionsBool("-sf_unknown_input_stream", "SF root/leafdata is computed on arbitrary streams unknown to SF", "PetscSFSetFromOptions", sf->unknown_input_stream, &sf->unknown_input_stream, NULL)); 3569566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-sf_use_stream_aware_mpi", "Assume the underlying MPI is cuda-stream aware", "PetscSFSetFromOptions", sf->use_stream_aware_mpi, &sf->use_stream_aware_mpi, NULL)); 3579566063dSJacob Faibussowitsch PetscCall(PetscOptionsString("-sf_backend", "Select the device backend SF uses", "PetscSFSetFromOptions", NULL, backendstr, sizeof(backendstr), &set)); 3589566063dSJacob Faibussowitsch PetscCall(PetscStrcasecmp("cuda", backendstr, &isCuda)); 3599566063dSJacob Faibussowitsch PetscCall(PetscStrcasecmp("kokkos", backendstr, &isKokkos)); 3609566063dSJacob Faibussowitsch PetscCall(PetscStrcasecmp("hip", backendstr, &isHip)); 36159af0bd3SScott Kruger #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) 36220c24465SJunchao Zhang if (isCuda) sf->backend = PETSCSF_BACKEND_CUDA; 36320c24465SJunchao Zhang else if (isKokkos) sf->backend = PETSCSF_BACKEND_KOKKOS; 36459af0bd3SScott Kruger else if (isHip) sf->backend = PETSCSF_BACKEND_HIP; 36528b400f6SJacob Faibussowitsch else PetscCheck(!set, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "-sf_backend %s is not supported. You may choose cuda, hip or kokkos (if installed)", backendstr); 36620c24465SJunchao Zhang #elif defined(PETSC_HAVE_KOKKOS) 36708401ef6SPierre Jolivet PetscCheck(!set || isKokkos, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "-sf_backend %s is not supported. You can only choose kokkos", backendstr); 36820c24465SJunchao Zhang #endif 36920c24465SJunchao Zhang } 370c2a741eeSJunchao Zhang #endif 371dbbe0bcdSBarry Smith PetscTryTypeMethod(sf, SetFromOptions, PetscOptionsObject); 372d0609cedSBarry Smith PetscOptionsEnd(); 37395fce210SBarry Smith PetscFunctionReturn(0); 37495fce210SBarry Smith } 37595fce210SBarry Smith 37629046d53SLisandro Dalcin /*@ 37795fce210SBarry Smith PetscSFSetRankOrder - sort multi-points for gathers and scatters by rank order 37895fce210SBarry Smith 37995fce210SBarry Smith Logically Collective 38095fce210SBarry Smith 3814165533cSJose E. Roman Input Parameters: 38295fce210SBarry Smith + sf - star forest 383cab54364SBarry Smith - flg - `PETSC_TRUE` to sort, `PETSC_FALSE` to skip sorting (lower setup cost, but non-deterministic) 38495fce210SBarry Smith 38595fce210SBarry Smith Level: advanced 38695fce210SBarry Smith 387cab54364SBarry Smith .seealso: `PetscSFType`, `PetscSFGatherBegin()`, `PetscSFScatterBegin()` 38895fce210SBarry Smith @*/ 389d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFSetRankOrder(PetscSF sf, PetscBool flg) 390d71ae5a4SJacob Faibussowitsch { 39195fce210SBarry Smith PetscFunctionBegin; 39295fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 39395fce210SBarry Smith PetscValidLogicalCollectiveBool(sf, flg, 2); 39428b400f6SJacob Faibussowitsch PetscCheck(!sf->multi, PetscObjectComm((PetscObject)sf), PETSC_ERR_ARG_WRONGSTATE, "Rank ordering must be set before first call to PetscSFGatherBegin() or PetscSFScatterBegin()"); 39595fce210SBarry Smith sf->rankorder = flg; 39695fce210SBarry Smith PetscFunctionReturn(0); 39795fce210SBarry Smith } 39895fce210SBarry Smith 3998dbb0df6SBarry Smith /*@C 40095fce210SBarry Smith PetscSFSetGraph - Set a parallel star forest 40195fce210SBarry Smith 40295fce210SBarry Smith Collective 40395fce210SBarry Smith 4044165533cSJose E. Roman Input Parameters: 40595fce210SBarry Smith + sf - star forest 40695fce210SBarry Smith . nroots - number of root vertices on the current process (these are possible targets for other process to attach leaves) 40795fce210SBarry Smith . nleaves - number of leaf vertices on the current process, each of these references a root on any process 408c4e6a40aSLawrence Mitchell . ilocal - locations of leaves in leafdata buffers, pass NULL for contiguous storage (locations must be >= 0, enforced 409c4e6a40aSLawrence Mitchell during setup in debug mode) 41095fce210SBarry Smith . localmode - copy mode for ilocal 411c4e6a40aSLawrence Mitchell . iremote - remote locations of root vertices for each leaf on the current process (locations must be >= 0, enforced 412c4e6a40aSLawrence Mitchell during setup in debug mode) 41395fce210SBarry Smith - remotemode - copy mode for iremote 41495fce210SBarry Smith 41595fce210SBarry Smith Level: intermediate 41695fce210SBarry Smith 41795452b02SPatrick Sanan Notes: 418db2b9530SVaclav Hapla Leaf indices in ilocal must be unique, otherwise an error occurs. 41938ab3f8aSBarry Smith 420db2b9530SVaclav Hapla Input arrays ilocal and iremote follow the PetscCopyMode semantics. 421cab54364SBarry Smith In particular, if localmode/remotemode is `PETSC_OWN_POINTER` or `PETSC_USE_POINTER`, 422db2b9530SVaclav Hapla PETSc might modify the respective array; 423cab54364SBarry Smith if `PETSC_USE_POINTER`, the user must delete the array after PetscSFDestroy(). 424cab54364SBarry Smith Only if `PETSC_COPY_VALUES` is used, the respective array is guaranteed to stay intact and a const array can be passed (but a cast to non-const is needed). 425db2b9530SVaclav Hapla 426cab54364SBarry Smith Fortran Note: 427db2b9530SVaclav Hapla In Fortran you must use PETSC_COPY_VALUES for localmode and remotemode. 428c4e6a40aSLawrence Mitchell 429cab54364SBarry Smith Developer Note: 430db2b9530SVaclav Hapla We sort leaves to check for duplicates and contiguousness and to find minleaf/maxleaf. 431db2b9530SVaclav Hapla This also allows to compare leaf sets of two SFs easily. 43272bf8598SVaclav Hapla 433cab54364SBarry Smith .seealso: `PetscSFType`, `PetscSFCreate()`, `PetscSFView()`, `PetscSFGetGraph()` 43495fce210SBarry Smith @*/ 435d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFSetGraph(PetscSF sf, PetscInt nroots, PetscInt nleaves, PetscInt *ilocal, PetscCopyMode localmode, PetscSFNode *iremote, PetscCopyMode remotemode) 436d71ae5a4SJacob Faibussowitsch { 437db2b9530SVaclav Hapla PetscBool unique, contiguous; 43895fce210SBarry Smith 43995fce210SBarry Smith PetscFunctionBegin; 44095fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 44129046d53SLisandro Dalcin if (nleaves > 0 && ilocal) PetscValidIntPointer(ilocal, 4); 44229046d53SLisandro Dalcin if (nleaves > 0) PetscValidPointer(iremote, 6); 44308401ef6SPierre Jolivet PetscCheck(nroots >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "nroots %" PetscInt_FMT ", cannot be negative", nroots); 44408401ef6SPierre Jolivet PetscCheck(nleaves >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "nleaves %" PetscInt_FMT ", cannot be negative", nleaves); 4458da24d32SBarry Smith /* enums may be handled as unsigned by some compilers, NVHPC for example, the int cast 4468da24d32SBarry Smith * below is to prevent NVHPC from warning about meaningless comparison of unsigned with zero */ 4478da24d32SBarry Smith PetscCheck((int)localmode >= PETSC_COPY_VALUES && localmode <= PETSC_USE_POINTER, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Wrong localmode %d", localmode); 4488da24d32SBarry Smith PetscCheck((int)remotemode >= PETSC_COPY_VALUES && remotemode <= PETSC_USE_POINTER, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Wrong remotemode %d", remotemode); 44929046d53SLisandro Dalcin 4502a67d2daSStefano Zampini if (sf->nroots >= 0) { /* Reset only if graph already set */ 4519566063dSJacob Faibussowitsch PetscCall(PetscSFReset(sf)); 4522a67d2daSStefano Zampini } 4532a67d2daSStefano Zampini 4549566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(PETSCSF_SetGraph, sf, 0, 0, 0)); 45529046d53SLisandro Dalcin 45695fce210SBarry Smith sf->nroots = nroots; 45795fce210SBarry Smith sf->nleaves = nleaves; 45829046d53SLisandro Dalcin 459db2b9530SVaclav Hapla if (localmode == PETSC_COPY_VALUES && ilocal) { 460db2b9530SVaclav Hapla PetscInt *tlocal = NULL; 461db2b9530SVaclav Hapla 4629566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nleaves, &tlocal)); 4639566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(tlocal, ilocal, nleaves)); 464db2b9530SVaclav Hapla ilocal = tlocal; 465db2b9530SVaclav Hapla } 466db2b9530SVaclav Hapla if (remotemode == PETSC_COPY_VALUES) { 467db2b9530SVaclav Hapla PetscSFNode *tremote = NULL; 468db2b9530SVaclav Hapla 4699566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nleaves, &tremote)); 4709566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(tremote, iremote, nleaves)); 471db2b9530SVaclav Hapla iremote = tremote; 472db2b9530SVaclav Hapla } 473db2b9530SVaclav Hapla 47429046d53SLisandro Dalcin if (nleaves && ilocal) { 475db2b9530SVaclav Hapla PetscSFNode work; 476db2b9530SVaclav Hapla 4779566063dSJacob Faibussowitsch PetscCall(PetscSortIntWithDataArray(nleaves, ilocal, iremote, sizeof(PetscSFNode), &work)); 4789566063dSJacob Faibussowitsch PetscCall(PetscSortedCheckDupsInt(nleaves, ilocal, &unique)); 479db2b9530SVaclav Hapla unique = PetscNot(unique); 480db2b9530SVaclav Hapla PetscCheck(sf->allow_multi_leaves || unique, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Input ilocal has duplicate entries which is not allowed for this PetscSF"); 481db2b9530SVaclav Hapla sf->minleaf = ilocal[0]; 482db2b9530SVaclav Hapla sf->maxleaf = ilocal[nleaves - 1]; 483db2b9530SVaclav Hapla contiguous = (PetscBool)(unique && ilocal[0] == 0 && ilocal[nleaves - 1] == nleaves - 1); 48429046d53SLisandro Dalcin } else { 48529046d53SLisandro Dalcin sf->minleaf = 0; 48629046d53SLisandro Dalcin sf->maxleaf = nleaves - 1; 487db2b9530SVaclav Hapla unique = PETSC_TRUE; 488db2b9530SVaclav Hapla contiguous = PETSC_TRUE; 48929046d53SLisandro Dalcin } 49029046d53SLisandro Dalcin 491db2b9530SVaclav Hapla if (contiguous) { 492db2b9530SVaclav Hapla if (localmode == PETSC_USE_POINTER) { 493db2b9530SVaclav Hapla ilocal = NULL; 494db2b9530SVaclav Hapla } else { 4959566063dSJacob Faibussowitsch PetscCall(PetscFree(ilocal)); 496db2b9530SVaclav Hapla } 497db2b9530SVaclav Hapla } 498db2b9530SVaclav Hapla sf->mine = ilocal; 499db2b9530SVaclav Hapla if (localmode == PETSC_USE_POINTER) { 50029046d53SLisandro Dalcin sf->mine_alloc = NULL; 501db2b9530SVaclav Hapla } else { 502db2b9530SVaclav Hapla sf->mine_alloc = ilocal; 50395fce210SBarry Smith } 504db2b9530SVaclav Hapla sf->remote = iremote; 505db2b9530SVaclav Hapla if (remotemode == PETSC_USE_POINTER) { 50629046d53SLisandro Dalcin sf->remote_alloc = NULL; 507db2b9530SVaclav Hapla } else { 508db2b9530SVaclav Hapla sf->remote_alloc = iremote; 50995fce210SBarry Smith } 5109566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(PETSCSF_SetGraph, sf, 0, 0, 0)); 51129046d53SLisandro Dalcin sf->graphset = PETSC_TRUE; 51295fce210SBarry Smith PetscFunctionReturn(0); 51395fce210SBarry Smith } 51495fce210SBarry Smith 51529046d53SLisandro Dalcin /*@ 516cab54364SBarry Smith PetscSFSetGraphWithPattern - Sets the graph of a `PetscSF` with a specific pattern 517dd5b3ca6SJunchao Zhang 518dd5b3ca6SJunchao Zhang Collective 519dd5b3ca6SJunchao Zhang 520dd5b3ca6SJunchao Zhang Input Parameters: 521cab54364SBarry Smith + sf - The `PetscSF` 522cab54364SBarry Smith . map - Layout of roots over all processes (insignificant when pattern is `PETSCSF_PATTERN_ALLTOALL`) 523cab54364SBarry Smith - pattern - One of `PETSCSF_PATTERN_ALLGATHER`, `PETSCSF_PATTERN_GATHER`, `PETSCSF_PATTERN_ALLTOALL` 524cab54364SBarry Smith 525cab54364SBarry Smith Level: intermediate 526dd5b3ca6SJunchao Zhang 527dd5b3ca6SJunchao Zhang Notes: 528cab54364SBarry Smith It is easier to explain `PetscSFPattern` using vectors. Suppose we have an MPI vector x and its layout is map. 529dd5b3ca6SJunchao Zhang n and N are local and global sizes of x respectively. 530dd5b3ca6SJunchao Zhang 531cab54364SBarry Smith With `PETSCSF_PATTERN_ALLGATHER`, the routine creates a graph that if one does Bcast on it, it will copy x to 532dd5b3ca6SJunchao Zhang sequential vectors y on all ranks. 533dd5b3ca6SJunchao Zhang 534cab54364SBarry Smith With `PETSCSF_PATTERN_GATHER`, the routine creates a graph that if one does Bcast on it, it will copy x to a 535dd5b3ca6SJunchao Zhang sequential vector y on rank 0. 536dd5b3ca6SJunchao Zhang 537dd5b3ca6SJunchao Zhang In above cases, entries of x are roots and entries of y are leaves. 538dd5b3ca6SJunchao Zhang 539cab54364SBarry Smith With `PETSCSF_PATTERN_ALLTOALL`, map is insignificant. Suppose NP is size of sf's communicator. The routine 540dd5b3ca6SJunchao Zhang creates a graph that every rank has NP leaves and NP roots. On rank i, its leaf j is connected to root i 541cab54364SBarry Smith of rank j. Here 0 <=i,j<NP. It is a kind of `MPI_Alltoall()` with sendcount/recvcount being 1. Note that it does 542dd5b3ca6SJunchao Zhang not mean one can not send multiple items. One just needs to create a new MPI datatype for the mulptiple data 543cab54364SBarry Smith items with `MPI_Type_contiguous` and use that as the <unit> argument in SF routines. 544dd5b3ca6SJunchao Zhang 545dd5b3ca6SJunchao Zhang In this case, roots and leaves are symmetric. 546dd5b3ca6SJunchao Zhang 547cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFCreate()`, `PetscSFView()`, `PetscSFGetGraph()` 548dd5b3ca6SJunchao Zhang @*/ 549d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFSetGraphWithPattern(PetscSF sf, PetscLayout map, PetscSFPattern pattern) 550d71ae5a4SJacob Faibussowitsch { 551dd5b3ca6SJunchao Zhang MPI_Comm comm; 552dd5b3ca6SJunchao Zhang PetscInt n, N, res[2]; 553dd5b3ca6SJunchao Zhang PetscMPIInt rank, size; 554dd5b3ca6SJunchao Zhang PetscSFType type; 555dd5b3ca6SJunchao Zhang 556dd5b3ca6SJunchao Zhang PetscFunctionBegin; 5572abc8c78SJacob Faibussowitsch PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 5582abc8c78SJacob Faibussowitsch if (pattern != PETSCSF_PATTERN_ALLTOALL) PetscValidPointer(map, 2); 5599566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)sf, &comm)); 5602c71b3e2SJacob Faibussowitsch PetscCheck(pattern >= PETSCSF_PATTERN_ALLGATHER && pattern <= PETSCSF_PATTERN_ALLTOALL, comm, PETSC_ERR_ARG_OUTOFRANGE, "Unsupported PetscSFPattern %d", pattern); 5619566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 5629566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 563dd5b3ca6SJunchao Zhang 564dd5b3ca6SJunchao Zhang if (pattern == PETSCSF_PATTERN_ALLTOALL) { 565dd5b3ca6SJunchao Zhang type = PETSCSFALLTOALL; 5669566063dSJacob Faibussowitsch PetscCall(PetscLayoutCreate(comm, &sf->map)); 5679566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetLocalSize(sf->map, size)); 5689566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetSize(sf->map, ((PetscInt)size) * size)); 5699566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(sf->map)); 570dd5b3ca6SJunchao Zhang } else { 5719566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetLocalSize(map, &n)); 5729566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetSize(map, &N)); 573dd5b3ca6SJunchao Zhang res[0] = n; 574dd5b3ca6SJunchao Zhang res[1] = -n; 575dd5b3ca6SJunchao Zhang /* Check if n are same over all ranks so that we can optimize it */ 5761c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(MPI_IN_PLACE, res, 2, MPIU_INT, MPI_MAX, comm)); 577dd5b3ca6SJunchao Zhang if (res[0] == -res[1]) { /* same n */ 578dd5b3ca6SJunchao Zhang type = (pattern == PETSCSF_PATTERN_ALLGATHER) ? PETSCSFALLGATHER : PETSCSFGATHER; 579dd5b3ca6SJunchao Zhang } else { 580dd5b3ca6SJunchao Zhang type = (pattern == PETSCSF_PATTERN_ALLGATHER) ? PETSCSFALLGATHERV : PETSCSFGATHERV; 581dd5b3ca6SJunchao Zhang } 5829566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(map, &sf->map)); 583dd5b3ca6SJunchao Zhang } 5849566063dSJacob Faibussowitsch PetscCall(PetscSFSetType(sf, type)); 585dd5b3ca6SJunchao Zhang 586dd5b3ca6SJunchao Zhang sf->pattern = pattern; 587dd5b3ca6SJunchao Zhang sf->mine = NULL; /* Contiguous */ 588dd5b3ca6SJunchao Zhang 589dd5b3ca6SJunchao Zhang /* Set nleaves, nroots here in case user calls PetscSFGetGraph, which is legal to call even before PetscSFSetUp is called. 590dd5b3ca6SJunchao Zhang Also set other easy stuff. 591dd5b3ca6SJunchao Zhang */ 592dd5b3ca6SJunchao Zhang if (pattern == PETSCSF_PATTERN_ALLGATHER) { 593dd5b3ca6SJunchao Zhang sf->nleaves = N; 594dd5b3ca6SJunchao Zhang sf->nroots = n; 595dd5b3ca6SJunchao Zhang sf->nranks = size; 596dd5b3ca6SJunchao Zhang sf->minleaf = 0; 597dd5b3ca6SJunchao Zhang sf->maxleaf = N - 1; 598dd5b3ca6SJunchao Zhang } else if (pattern == PETSCSF_PATTERN_GATHER) { 599dd5b3ca6SJunchao Zhang sf->nleaves = rank ? 0 : N; 600dd5b3ca6SJunchao Zhang sf->nroots = n; 601dd5b3ca6SJunchao Zhang sf->nranks = rank ? 0 : size; 602dd5b3ca6SJunchao Zhang sf->minleaf = 0; 603dd5b3ca6SJunchao Zhang sf->maxleaf = rank ? -1 : N - 1; 604dd5b3ca6SJunchao Zhang } else if (pattern == PETSCSF_PATTERN_ALLTOALL) { 605dd5b3ca6SJunchao Zhang sf->nleaves = size; 606dd5b3ca6SJunchao Zhang sf->nroots = size; 607dd5b3ca6SJunchao Zhang sf->nranks = size; 608dd5b3ca6SJunchao Zhang sf->minleaf = 0; 609dd5b3ca6SJunchao Zhang sf->maxleaf = size - 1; 610dd5b3ca6SJunchao Zhang } 611dd5b3ca6SJunchao Zhang sf->ndranks = 0; /* We do not need to separate out distinguished ranks for patterned graphs to improve communication performance */ 612dd5b3ca6SJunchao Zhang sf->graphset = PETSC_TRUE; 613dd5b3ca6SJunchao Zhang PetscFunctionReturn(0); 614dd5b3ca6SJunchao Zhang } 615dd5b3ca6SJunchao Zhang 616dd5b3ca6SJunchao Zhang /*@ 617cab54364SBarry Smith PetscSFCreateInverseSF - given a `PetscSF` in which all vertices have degree 1, creates the inverse map 61895fce210SBarry Smith 61995fce210SBarry Smith Collective 62095fce210SBarry Smith 6214165533cSJose E. Roman Input Parameter: 62295fce210SBarry Smith . sf - star forest to invert 62395fce210SBarry Smith 6244165533cSJose E. Roman Output Parameter: 62595fce210SBarry Smith . isf - inverse of sf 6264165533cSJose E. Roman 62795fce210SBarry Smith Level: advanced 62895fce210SBarry Smith 62995fce210SBarry Smith Notes: 63095fce210SBarry Smith All roots must have degree 1. 63195fce210SBarry Smith 63295fce210SBarry Smith The local space may be a permutation, but cannot be sparse. 63395fce210SBarry Smith 634cab54364SBarry Smith .seealso: `PetscSFType`, `PetscSFSetGraph()` 63595fce210SBarry Smith @*/ 636d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFCreateInverseSF(PetscSF sf, PetscSF *isf) 637d71ae5a4SJacob Faibussowitsch { 63895fce210SBarry Smith PetscMPIInt rank; 63995fce210SBarry Smith PetscInt i, nroots, nleaves, maxlocal, count, *newilocal; 64095fce210SBarry Smith const PetscInt *ilocal; 64195fce210SBarry Smith PetscSFNode *roots, *leaves; 64295fce210SBarry Smith 64395fce210SBarry Smith PetscFunctionBegin; 64429046d53SLisandro Dalcin PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 64529046d53SLisandro Dalcin PetscSFCheckGraphSet(sf, 1); 64629046d53SLisandro Dalcin PetscValidPointer(isf, 2); 64729046d53SLisandro Dalcin 6489566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sf, &nroots, &nleaves, &ilocal, NULL)); 64929046d53SLisandro Dalcin maxlocal = sf->maxleaf + 1; /* TODO: We should use PetscSFGetLeafRange() */ 65029046d53SLisandro Dalcin 6519566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)sf), &rank)); 6529566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(nroots, &roots, maxlocal, &leaves)); 653ae9aee6dSMatthew G. Knepley for (i = 0; i < maxlocal; i++) { 65495fce210SBarry Smith leaves[i].rank = rank; 65595fce210SBarry Smith leaves[i].index = i; 65695fce210SBarry Smith } 65795fce210SBarry Smith for (i = 0; i < nroots; i++) { 65895fce210SBarry Smith roots[i].rank = -1; 65995fce210SBarry Smith roots[i].index = -1; 66095fce210SBarry Smith } 6619566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sf, MPIU_2INT, leaves, roots, MPI_REPLACE)); 6629566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf, MPIU_2INT, leaves, roots, MPI_REPLACE)); 66395fce210SBarry Smith 66495fce210SBarry Smith /* Check whether our leaves are sparse */ 6659371c9d4SSatish Balay for (i = 0, count = 0; i < nroots; i++) 6669371c9d4SSatish Balay if (roots[i].rank >= 0) count++; 66795fce210SBarry Smith if (count == nroots) newilocal = NULL; 6689371c9d4SSatish Balay else { /* Index for sparse leaves and compact "roots" array (which is to become our leaves). */ PetscCall(PetscMalloc1(count, &newilocal)); 66995fce210SBarry Smith for (i = 0, count = 0; i < nroots; i++) { 67095fce210SBarry Smith if (roots[i].rank >= 0) { 67195fce210SBarry Smith newilocal[count] = i; 67295fce210SBarry Smith roots[count].rank = roots[i].rank; 67395fce210SBarry Smith roots[count].index = roots[i].index; 67495fce210SBarry Smith count++; 67595fce210SBarry Smith } 67695fce210SBarry Smith } 67795fce210SBarry Smith } 67895fce210SBarry Smith 6799566063dSJacob Faibussowitsch PetscCall(PetscSFDuplicate(sf, PETSCSF_DUPLICATE_CONFONLY, isf)); 6809566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(*isf, maxlocal, count, newilocal, PETSC_OWN_POINTER, roots, PETSC_COPY_VALUES)); 6819566063dSJacob Faibussowitsch PetscCall(PetscFree2(roots, leaves)); 68295fce210SBarry Smith PetscFunctionReturn(0); 68395fce210SBarry Smith } 68495fce210SBarry Smith 68595fce210SBarry Smith /*@ 686cab54364SBarry Smith PetscSFDuplicate - duplicate a `PetscSF`, optionally preserving rank connectivity and graph 68795fce210SBarry Smith 68895fce210SBarry Smith Collective 68995fce210SBarry Smith 6904165533cSJose E. Roman Input Parameters: 69195fce210SBarry Smith + sf - communication object to duplicate 692cab54364SBarry Smith - opt - `PETSCSF_DUPLICATE_CONFONLY`, `PETSCSF_DUPLICATE_RANKS`, or `PETSCSF_DUPLICATE_GRAPH` (see `PetscSFDuplicateOption`) 69395fce210SBarry Smith 6944165533cSJose E. Roman Output Parameter: 69595fce210SBarry Smith . newsf - new communication object 69695fce210SBarry Smith 69795fce210SBarry Smith Level: beginner 69895fce210SBarry Smith 699cab54364SBarry Smith .seealso: `PetscSFType`, `PetscSFCreate()`, `PetscSFSetType()`, `PetscSFSetGraph()` 70095fce210SBarry Smith @*/ 701d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFDuplicate(PetscSF sf, PetscSFDuplicateOption opt, PetscSF *newsf) 702d71ae5a4SJacob Faibussowitsch { 70329046d53SLisandro Dalcin PetscSFType type; 70497929ea7SJunchao Zhang MPI_Datatype dtype = MPIU_SCALAR; 70595fce210SBarry Smith 70695fce210SBarry Smith PetscFunctionBegin; 70729046d53SLisandro Dalcin PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 70829046d53SLisandro Dalcin PetscValidLogicalCollectiveEnum(sf, opt, 2); 70929046d53SLisandro Dalcin PetscValidPointer(newsf, 3); 7109566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)sf), newsf)); 7119566063dSJacob Faibussowitsch PetscCall(PetscSFGetType(sf, &type)); 7129566063dSJacob Faibussowitsch if (type) PetscCall(PetscSFSetType(*newsf, type)); 71354a24607SJunchao Zhang (*newsf)->allow_multi_leaves = sf->allow_multi_leaves; /* Dup this flag ealier since PetscSFSetGraph() below checks on this flag */ 71495fce210SBarry Smith if (opt == PETSCSF_DUPLICATE_GRAPH) { 715dd5b3ca6SJunchao Zhang PetscSFCheckGraphSet(sf, 1); 716dd5b3ca6SJunchao Zhang if (sf->pattern == PETSCSF_PATTERN_GENERAL) { 71795fce210SBarry Smith PetscInt nroots, nleaves; 71895fce210SBarry Smith const PetscInt *ilocal; 71995fce210SBarry Smith const PetscSFNode *iremote; 7209566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sf, &nroots, &nleaves, &ilocal, &iremote)); 7219566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(*newsf, nroots, nleaves, (PetscInt *)ilocal, PETSC_COPY_VALUES, (PetscSFNode *)iremote, PETSC_COPY_VALUES)); 722dd5b3ca6SJunchao Zhang } else { 7239566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphWithPattern(*newsf, sf->map, sf->pattern)); 724dd5b3ca6SJunchao Zhang } 72595fce210SBarry Smith } 72697929ea7SJunchao Zhang /* Since oldtype is committed, so is newtype, according to MPI */ 7279566063dSJacob Faibussowitsch if (sf->vscat.bs > 1) PetscCallMPI(MPI_Type_dup(sf->vscat.unit, &dtype)); 72897929ea7SJunchao Zhang (*newsf)->vscat.bs = sf->vscat.bs; 72997929ea7SJunchao Zhang (*newsf)->vscat.unit = dtype; 73097929ea7SJunchao Zhang (*newsf)->vscat.to_n = sf->vscat.to_n; 73197929ea7SJunchao Zhang (*newsf)->vscat.from_n = sf->vscat.from_n; 73297929ea7SJunchao Zhang /* Do not copy lsf. Build it on demand since it is rarely used */ 73397929ea7SJunchao Zhang 73420c24465SJunchao Zhang #if defined(PETSC_HAVE_DEVICE) 73520c24465SJunchao Zhang (*newsf)->backend = sf->backend; 73671438e86SJunchao Zhang (*newsf)->unknown_input_stream = sf->unknown_input_stream; 73720c24465SJunchao Zhang (*newsf)->use_gpu_aware_mpi = sf->use_gpu_aware_mpi; 73820c24465SJunchao Zhang (*newsf)->use_stream_aware_mpi = sf->use_stream_aware_mpi; 73920c24465SJunchao Zhang #endif 740dbbe0bcdSBarry Smith PetscTryTypeMethod(sf, Duplicate, opt, *newsf); 74120c24465SJunchao Zhang /* Don't do PetscSFSetUp() since the new sf's graph might have not been set. */ 74295fce210SBarry Smith PetscFunctionReturn(0); 74395fce210SBarry Smith } 74495fce210SBarry Smith 74595fce210SBarry Smith /*@C 74695fce210SBarry Smith PetscSFGetGraph - Get the graph specifying a parallel star forest 74795fce210SBarry Smith 74895fce210SBarry Smith Not Collective 74995fce210SBarry Smith 7504165533cSJose E. Roman Input Parameter: 75195fce210SBarry Smith . sf - star forest 75295fce210SBarry Smith 7534165533cSJose E. Roman Output Parameters: 75495fce210SBarry Smith + nroots - number of root vertices on the current process (these are possible targets for other process to attach leaves) 75595fce210SBarry Smith . nleaves - number of leaf vertices on the current process, each of these references a root on any process 756bc6585dcSJunchao Zhang . ilocal - locations of leaves in leafdata buffers (if returned value is NULL, it means leaves are in contiguous storage) 75795fce210SBarry Smith - iremote - remote locations of root vertices for each leaf on the current process 75895fce210SBarry Smith 759cab54364SBarry Smith Level: intermediate 760cab54364SBarry Smith 761373e0d91SLisandro Dalcin Notes: 762373e0d91SLisandro Dalcin We are not currently requiring that the graph is set, thus returning nroots=-1 if it has not been set yet 763373e0d91SLisandro Dalcin 764cab54364SBarry Smith The returned ilocal/iremote might contain values in different order than the input ones in `PetscSFSetGraph()`, 765db2b9530SVaclav Hapla see its manpage for details. 766db2b9530SVaclav Hapla 7678dbb0df6SBarry Smith Fortran Notes: 7688dbb0df6SBarry Smith The returned iremote array is a copy and must be deallocated after use. Consequently, if you 769cab54364SBarry Smith want to update the graph, you must call `PetscSFSetGraph()` after modifying the iremote array. 7708dbb0df6SBarry Smith 7718dbb0df6SBarry Smith To check for a NULL ilocal use 7728dbb0df6SBarry Smith $ if (loc(ilocal) == loc(PETSC_NULL_INTEGER)) then 773ca797d7aSLawrence Mitchell 774cab54364SBarry Smith .seealso: `PetscSFType`, `PetscSFCreate()`, `PetscSFView()`, `PetscSFSetGraph()` 77595fce210SBarry Smith @*/ 776d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFGetGraph(PetscSF sf, PetscInt *nroots, PetscInt *nleaves, const PetscInt **ilocal, const PetscSFNode **iremote) 777d71ae5a4SJacob Faibussowitsch { 77895fce210SBarry Smith PetscFunctionBegin; 77995fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 780b8dee149SJunchao Zhang if (sf->ops->GetGraph) { 7819566063dSJacob Faibussowitsch PetscCall((sf->ops->GetGraph)(sf, nroots, nleaves, ilocal, iremote)); 782b8dee149SJunchao Zhang } else { 78395fce210SBarry Smith if (nroots) *nroots = sf->nroots; 78495fce210SBarry Smith if (nleaves) *nleaves = sf->nleaves; 78595fce210SBarry Smith if (ilocal) *ilocal = sf->mine; 78695fce210SBarry Smith if (iremote) *iremote = sf->remote; 787b8dee149SJunchao Zhang } 78895fce210SBarry Smith PetscFunctionReturn(0); 78995fce210SBarry Smith } 79095fce210SBarry Smith 79129046d53SLisandro Dalcin /*@ 79295fce210SBarry Smith PetscSFGetLeafRange - Get the active leaf ranges 79395fce210SBarry Smith 79495fce210SBarry Smith Not Collective 79595fce210SBarry Smith 7964165533cSJose E. Roman Input Parameter: 79795fce210SBarry Smith . sf - star forest 79895fce210SBarry Smith 7994165533cSJose E. Roman Output Parameters: 800dd5b3ca6SJunchao Zhang + minleaf - minimum active leaf on this process. Return 0 if there are no leaves. 801dd5b3ca6SJunchao Zhang - maxleaf - maximum active leaf on this process. Return -1 if there are no leaves. 80295fce210SBarry Smith 80395fce210SBarry Smith Level: developer 80495fce210SBarry Smith 805cab54364SBarry Smith .seealso: `PetscSFType`, `PetscSFCreate()`, `PetscSFView()`, `PetscSFSetGraph()`, `PetscSFGetGraph()` 80695fce210SBarry Smith @*/ 807d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFGetLeafRange(PetscSF sf, PetscInt *minleaf, PetscInt *maxleaf) 808d71ae5a4SJacob Faibussowitsch { 80995fce210SBarry Smith PetscFunctionBegin; 81095fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 81129046d53SLisandro Dalcin PetscSFCheckGraphSet(sf, 1); 81295fce210SBarry Smith if (minleaf) *minleaf = sf->minleaf; 81395fce210SBarry Smith if (maxleaf) *maxleaf = sf->maxleaf; 81495fce210SBarry Smith PetscFunctionReturn(0); 81595fce210SBarry Smith } 81695fce210SBarry Smith 81795fce210SBarry Smith /*@C 818cab54364SBarry Smith PetscSFViewFromOptions - View a `PetscSF` based on arguments in the options database 819fe2efc57SMark 820cab54364SBarry Smith Collective on A 821fe2efc57SMark 822fe2efc57SMark Input Parameters: 823fe2efc57SMark + A - the star forest 824cab54364SBarry Smith . obj - Optional object that provides the prefix for the option names 825736c3998SJose E. Roman - name - command line option 826fe2efc57SMark 827fe2efc57SMark Level: intermediate 828cab54364SBarry Smith 829db781477SPatrick Sanan .seealso: `PetscSF`, `PetscSFView`, `PetscObjectViewFromOptions()`, `PetscSFCreate()` 830fe2efc57SMark @*/ 831d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFViewFromOptions(PetscSF A, PetscObject obj, const char name[]) 832d71ae5a4SJacob Faibussowitsch { 833fe2efc57SMark PetscFunctionBegin; 834fe2efc57SMark PetscValidHeaderSpecific(A, PETSCSF_CLASSID, 1); 8359566063dSJacob Faibussowitsch PetscCall(PetscObjectViewFromOptions((PetscObject)A, obj, name)); 836fe2efc57SMark PetscFunctionReturn(0); 837fe2efc57SMark } 838fe2efc57SMark 839fe2efc57SMark /*@C 84095fce210SBarry Smith PetscSFView - view a star forest 84195fce210SBarry Smith 84295fce210SBarry Smith Collective 84395fce210SBarry Smith 8444165533cSJose E. Roman Input Parameters: 84595fce210SBarry Smith + sf - star forest 846cab54364SBarry Smith - viewer - viewer to display graph, for example `PETSC_VIEWER_STDOUT_WORLD` 84795fce210SBarry Smith 84895fce210SBarry Smith Level: beginner 84995fce210SBarry Smith 850cab54364SBarry Smith .seealso: `PetscSF`, `PetscViewer`, `PetscSFCreate()`, `PetscSFSetGraph()` 85195fce210SBarry Smith @*/ 852d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFView(PetscSF sf, PetscViewer viewer) 853d71ae5a4SJacob Faibussowitsch { 85495fce210SBarry Smith PetscBool iascii; 85595fce210SBarry Smith PetscViewerFormat format; 85695fce210SBarry Smith 85795fce210SBarry Smith PetscFunctionBegin; 85895fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 8599566063dSJacob Faibussowitsch if (!viewer) PetscCall(PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject)sf), &viewer)); 86095fce210SBarry Smith PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 86195fce210SBarry Smith PetscCheckSameComm(sf, 1, viewer, 2); 8629566063dSJacob Faibussowitsch if (sf->graphset) PetscCall(PetscSFSetUp(sf)); 8639566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 86453dd6d7dSJunchao Zhang if (iascii && viewer->format != PETSC_VIEWER_ASCII_MATLAB) { 86595fce210SBarry Smith PetscMPIInt rank; 86681bfa7aaSJed Brown PetscInt ii, i, j; 86795fce210SBarry Smith 8689566063dSJacob Faibussowitsch PetscCall(PetscObjectPrintClassNamePrefixType((PetscObject)sf, viewer)); 8699566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushTab(viewer)); 870dd5b3ca6SJunchao Zhang if (sf->pattern == PETSCSF_PATTERN_GENERAL) { 87180153354SVaclav Hapla if (!sf->graphset) { 8729566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "PetscSFSetGraph() has not been called yet\n")); 8739566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopTab(viewer)); 87480153354SVaclav Hapla PetscFunctionReturn(0); 87580153354SVaclav Hapla } 8769566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)sf), &rank)); 8779566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 8789566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Number of roots=%" PetscInt_FMT ", leaves=%" PetscInt_FMT ", remote ranks=%" PetscInt_FMT "\n", rank, sf->nroots, sf->nleaves, sf->nranks)); 87948a46eb9SPierre Jolivet for (i = 0; i < sf->nleaves; i++) PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] %" PetscInt_FMT " <- (%" PetscInt_FMT ",%" PetscInt_FMT ")\n", rank, sf->mine ? sf->mine[i] : i, sf->remote[i].rank, sf->remote[i].index)); 8809566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 8819566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 88295fce210SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 88381bfa7aaSJed Brown PetscMPIInt *tmpranks, *perm; 8849566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(sf->nranks, &tmpranks, sf->nranks, &perm)); 8859566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(tmpranks, sf->ranks, sf->nranks)); 88681bfa7aaSJed Brown for (i = 0; i < sf->nranks; i++) perm[i] = i; 8879566063dSJacob Faibussowitsch PetscCall(PetscSortMPIIntWithArray(sf->nranks, tmpranks, perm)); 8889566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Roots referenced by my leaves, by rank\n", rank)); 88981bfa7aaSJed Brown for (ii = 0; ii < sf->nranks; ii++) { 89081bfa7aaSJed Brown i = perm[ii]; 8919566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] %d: %" PetscInt_FMT " edges\n", rank, sf->ranks[i], sf->roffset[i + 1] - sf->roffset[i])); 89248a46eb9SPierre Jolivet for (j = sf->roffset[i]; j < sf->roffset[i + 1]; j++) PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] %" PetscInt_FMT " <- %" PetscInt_FMT "\n", rank, sf->rmine[j], sf->rremote[j])); 89395fce210SBarry Smith } 8949566063dSJacob Faibussowitsch PetscCall(PetscFree2(tmpranks, perm)); 89595fce210SBarry Smith } 8969566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 8979566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 898dd5b3ca6SJunchao Zhang } 8999566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopTab(viewer)); 90095fce210SBarry Smith } 901dbbe0bcdSBarry Smith PetscTryTypeMethod(sf, View, viewer); 90295fce210SBarry Smith PetscFunctionReturn(0); 90395fce210SBarry Smith } 90495fce210SBarry Smith 90595fce210SBarry Smith /*@C 906dec1416fSJunchao Zhang PetscSFGetRootRanks - Get root ranks and number of vertices referenced by leaves on this process 90795fce210SBarry Smith 90895fce210SBarry Smith Not Collective 90995fce210SBarry Smith 9104165533cSJose E. Roman Input Parameter: 91195fce210SBarry Smith . sf - star forest 91295fce210SBarry Smith 9134165533cSJose E. Roman Output Parameters: 91495fce210SBarry Smith + nranks - number of ranks referenced by local part 91595fce210SBarry Smith . ranks - array of ranks 91695fce210SBarry Smith . roffset - offset in rmine/rremote for each rank (length nranks+1) 91795fce210SBarry Smith . rmine - concatenated array holding local indices referencing each remote rank 91895fce210SBarry Smith - rremote - concatenated array holding remote indices referenced for each remote rank 91995fce210SBarry Smith 92095fce210SBarry Smith Level: developer 92195fce210SBarry Smith 922cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFGetLeafRanks()` 92395fce210SBarry Smith @*/ 924d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFGetRootRanks(PetscSF sf, PetscInt *nranks, const PetscMPIInt **ranks, const PetscInt **roffset, const PetscInt **rmine, const PetscInt **rremote) 925d71ae5a4SJacob Faibussowitsch { 92695fce210SBarry Smith PetscFunctionBegin; 92795fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 92828b400f6SJacob Faibussowitsch PetscCheck(sf->setupcalled, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Must call PetscSFSetUp() before obtaining ranks"); 929dec1416fSJunchao Zhang if (sf->ops->GetRootRanks) { 9309566063dSJacob Faibussowitsch PetscCall((sf->ops->GetRootRanks)(sf, nranks, ranks, roffset, rmine, rremote)); 931dec1416fSJunchao Zhang } else { 932dec1416fSJunchao Zhang /* The generic implementation */ 93395fce210SBarry Smith if (nranks) *nranks = sf->nranks; 93495fce210SBarry Smith if (ranks) *ranks = sf->ranks; 93595fce210SBarry Smith if (roffset) *roffset = sf->roffset; 93695fce210SBarry Smith if (rmine) *rmine = sf->rmine; 93795fce210SBarry Smith if (rremote) *rremote = sf->rremote; 938dec1416fSJunchao Zhang } 93995fce210SBarry Smith PetscFunctionReturn(0); 94095fce210SBarry Smith } 94195fce210SBarry Smith 9428750ddebSJunchao Zhang /*@C 9438750ddebSJunchao Zhang PetscSFGetLeafRanks - Get leaf ranks referencing roots on this process 9448750ddebSJunchao Zhang 9458750ddebSJunchao Zhang Not Collective 9468750ddebSJunchao Zhang 9474165533cSJose E. Roman Input Parameter: 9488750ddebSJunchao Zhang . sf - star forest 9498750ddebSJunchao Zhang 9504165533cSJose E. Roman Output Parameters: 9518750ddebSJunchao Zhang + niranks - number of leaf ranks referencing roots on this process 9528750ddebSJunchao Zhang . iranks - array of ranks 9538750ddebSJunchao Zhang . ioffset - offset in irootloc for each rank (length niranks+1) 9548750ddebSJunchao Zhang - irootloc - concatenated array holding local indices of roots referenced by each leaf rank 9558750ddebSJunchao Zhang 9568750ddebSJunchao Zhang Level: developer 9578750ddebSJunchao Zhang 958cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFGetRootRanks()` 9598750ddebSJunchao Zhang @*/ 960d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFGetLeafRanks(PetscSF sf, PetscInt *niranks, const PetscMPIInt **iranks, const PetscInt **ioffset, const PetscInt **irootloc) 961d71ae5a4SJacob Faibussowitsch { 9628750ddebSJunchao Zhang PetscFunctionBegin; 9638750ddebSJunchao Zhang PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 96428b400f6SJacob Faibussowitsch PetscCheck(sf->setupcalled, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Must call PetscSFSetUp() before obtaining ranks"); 9658750ddebSJunchao Zhang if (sf->ops->GetLeafRanks) { 9669566063dSJacob Faibussowitsch PetscCall((sf->ops->GetLeafRanks)(sf, niranks, iranks, ioffset, irootloc)); 9678750ddebSJunchao Zhang } else { 9688750ddebSJunchao Zhang PetscSFType type; 9699566063dSJacob Faibussowitsch PetscCall(PetscSFGetType(sf, &type)); 97098921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "PetscSFGetLeafRanks() is not supported on this StarForest type: %s", type); 9718750ddebSJunchao Zhang } 9728750ddebSJunchao Zhang PetscFunctionReturn(0); 9738750ddebSJunchao Zhang } 9748750ddebSJunchao Zhang 975d71ae5a4SJacob Faibussowitsch static PetscBool InList(PetscMPIInt needle, PetscMPIInt n, const PetscMPIInt *list) 976d71ae5a4SJacob Faibussowitsch { 977b5a8e515SJed Brown PetscInt i; 978b5a8e515SJed Brown for (i = 0; i < n; i++) { 979b5a8e515SJed Brown if (needle == list[i]) return PETSC_TRUE; 980b5a8e515SJed Brown } 981b5a8e515SJed Brown return PETSC_FALSE; 982b5a8e515SJed Brown } 983b5a8e515SJed Brown 98495fce210SBarry Smith /*@C 985cab54364SBarry Smith PetscSFSetUpRanks - Set up data structures associated with ranks; this is for internal use by `PetscSF` implementations. 98621c688dcSJed Brown 98721c688dcSJed Brown Collective 98821c688dcSJed Brown 9894165533cSJose E. Roman Input Parameters: 990cab54364SBarry Smith + sf - `PetscSF` to set up; `PetscSFSetGraph()` must have been called 991cab54364SBarry Smith - dgroup - `MPI_Group` of ranks to be distinguished (e.g., for self or shared memory exchange) 99221c688dcSJed Brown 99321c688dcSJed Brown Level: developer 99421c688dcSJed Brown 995cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFGetRootRanks()` 99621c688dcSJed Brown @*/ 997d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFSetUpRanks(PetscSF sf, MPI_Group dgroup) 998d71ae5a4SJacob Faibussowitsch { 99921c688dcSJed Brown PetscTable table; 100021c688dcSJed Brown PetscTablePosition pos; 1001b5a8e515SJed Brown PetscMPIInt size, groupsize, *groupranks; 1002247e8311SStefano Zampini PetscInt *rcount, *ranks; 1003247e8311SStefano Zampini PetscInt i, irank = -1, orank = -1; 100421c688dcSJed Brown 100521c688dcSJed Brown PetscFunctionBegin; 100621c688dcSJed Brown PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 100729046d53SLisandro Dalcin PetscSFCheckGraphSet(sf, 1); 10089566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)sf), &size)); 10099566063dSJacob Faibussowitsch PetscCall(PetscTableCreate(10, size, &table)); 101021c688dcSJed Brown for (i = 0; i < sf->nleaves; i++) { 101121c688dcSJed Brown /* Log 1-based rank */ 10129566063dSJacob Faibussowitsch PetscCall(PetscTableAdd(table, sf->remote[i].rank + 1, 1, ADD_VALUES)); 101321c688dcSJed Brown } 10149566063dSJacob Faibussowitsch PetscCall(PetscTableGetCount(table, &sf->nranks)); 10159566063dSJacob Faibussowitsch PetscCall(PetscMalloc4(sf->nranks, &sf->ranks, sf->nranks + 1, &sf->roffset, sf->nleaves, &sf->rmine, sf->nleaves, &sf->rremote)); 10169566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(sf->nranks, &rcount, sf->nranks, &ranks)); 10179566063dSJacob Faibussowitsch PetscCall(PetscTableGetHeadPosition(table, &pos)); 101821c688dcSJed Brown for (i = 0; i < sf->nranks; i++) { 10199566063dSJacob Faibussowitsch PetscCall(PetscTableGetNext(table, &pos, &ranks[i], &rcount[i])); 102021c688dcSJed Brown ranks[i]--; /* Convert back to 0-based */ 102121c688dcSJed Brown } 10229566063dSJacob Faibussowitsch PetscCall(PetscTableDestroy(&table)); 1023b5a8e515SJed Brown 1024b5a8e515SJed Brown /* We expect that dgroup is reliably "small" while nranks could be large */ 1025b5a8e515SJed Brown { 10267fb8a5e4SKarl Rupp MPI_Group group = MPI_GROUP_NULL; 1027b5a8e515SJed Brown PetscMPIInt *dgroupranks; 10289566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_group(PetscObjectComm((PetscObject)sf), &group)); 10299566063dSJacob Faibussowitsch PetscCallMPI(MPI_Group_size(dgroup, &groupsize)); 10309566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(groupsize, &dgroupranks)); 10319566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(groupsize, &groupranks)); 1032b5a8e515SJed Brown for (i = 0; i < groupsize; i++) dgroupranks[i] = i; 10339566063dSJacob Faibussowitsch if (groupsize) PetscCallMPI(MPI_Group_translate_ranks(dgroup, groupsize, dgroupranks, group, groupranks)); 10349566063dSJacob Faibussowitsch PetscCallMPI(MPI_Group_free(&group)); 10359566063dSJacob Faibussowitsch PetscCall(PetscFree(dgroupranks)); 1036b5a8e515SJed Brown } 1037b5a8e515SJed Brown 1038b5a8e515SJed Brown /* Partition ranks[] into distinguished (first sf->ndranks) followed by non-distinguished */ 1039b5a8e515SJed Brown for (sf->ndranks = 0, i = sf->nranks; sf->ndranks < i;) { 1040b5a8e515SJed Brown for (i--; sf->ndranks < i; i--) { /* Scan i backward looking for distinguished rank */ 1041b5a8e515SJed Brown if (InList(ranks[i], groupsize, groupranks)) break; 1042b5a8e515SJed Brown } 1043b5a8e515SJed Brown for (; sf->ndranks <= i; sf->ndranks++) { /* Scan sf->ndranks forward looking for non-distinguished rank */ 1044b5a8e515SJed Brown if (!InList(ranks[sf->ndranks], groupsize, groupranks)) break; 1045b5a8e515SJed Brown } 1046b5a8e515SJed Brown if (sf->ndranks < i) { /* Swap ranks[sf->ndranks] with ranks[i] */ 1047b5a8e515SJed Brown PetscInt tmprank, tmpcount; 1048247e8311SStefano Zampini 1049b5a8e515SJed Brown tmprank = ranks[i]; 1050b5a8e515SJed Brown tmpcount = rcount[i]; 1051b5a8e515SJed Brown ranks[i] = ranks[sf->ndranks]; 1052b5a8e515SJed Brown rcount[i] = rcount[sf->ndranks]; 1053b5a8e515SJed Brown ranks[sf->ndranks] = tmprank; 1054b5a8e515SJed Brown rcount[sf->ndranks] = tmpcount; 1055b5a8e515SJed Brown sf->ndranks++; 1056b5a8e515SJed Brown } 1057b5a8e515SJed Brown } 10589566063dSJacob Faibussowitsch PetscCall(PetscFree(groupranks)); 10599566063dSJacob Faibussowitsch PetscCall(PetscSortIntWithArray(sf->ndranks, ranks, rcount)); 10609566063dSJacob Faibussowitsch PetscCall(PetscSortIntWithArray(sf->nranks - sf->ndranks, ranks + sf->ndranks, rcount + sf->ndranks)); 106121c688dcSJed Brown sf->roffset[0] = 0; 106221c688dcSJed Brown for (i = 0; i < sf->nranks; i++) { 10639566063dSJacob Faibussowitsch PetscCall(PetscMPIIntCast(ranks[i], sf->ranks + i)); 106421c688dcSJed Brown sf->roffset[i + 1] = sf->roffset[i] + rcount[i]; 106521c688dcSJed Brown rcount[i] = 0; 106621c688dcSJed Brown } 1067247e8311SStefano Zampini for (i = 0, irank = -1, orank = -1; i < sf->nleaves; i++) { 1068247e8311SStefano Zampini /* short circuit */ 1069247e8311SStefano Zampini if (orank != sf->remote[i].rank) { 107021c688dcSJed Brown /* Search for index of iremote[i].rank in sf->ranks */ 10719566063dSJacob Faibussowitsch PetscCall(PetscFindMPIInt(sf->remote[i].rank, sf->ndranks, sf->ranks, &irank)); 1072b5a8e515SJed Brown if (irank < 0) { 10739566063dSJacob Faibussowitsch PetscCall(PetscFindMPIInt(sf->remote[i].rank, sf->nranks - sf->ndranks, sf->ranks + sf->ndranks, &irank)); 1074b5a8e515SJed Brown if (irank >= 0) irank += sf->ndranks; 107521c688dcSJed Brown } 1076247e8311SStefano Zampini orank = sf->remote[i].rank; 1077247e8311SStefano Zampini } 107808401ef6SPierre Jolivet PetscCheck(irank >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Could not find rank %" PetscInt_FMT " in array", sf->remote[i].rank); 107921c688dcSJed Brown sf->rmine[sf->roffset[irank] + rcount[irank]] = sf->mine ? sf->mine[i] : i; 108021c688dcSJed Brown sf->rremote[sf->roffset[irank] + rcount[irank]] = sf->remote[i].index; 108121c688dcSJed Brown rcount[irank]++; 108221c688dcSJed Brown } 10839566063dSJacob Faibussowitsch PetscCall(PetscFree2(rcount, ranks)); 108421c688dcSJed Brown PetscFunctionReturn(0); 108521c688dcSJed Brown } 108621c688dcSJed Brown 108721c688dcSJed Brown /*@C 108895fce210SBarry Smith PetscSFGetGroups - gets incoming and outgoing process groups 108995fce210SBarry Smith 109095fce210SBarry Smith Collective 109195fce210SBarry Smith 10924165533cSJose E. Roman Input Parameter: 109395fce210SBarry Smith . sf - star forest 109495fce210SBarry Smith 10954165533cSJose E. Roman Output Parameters: 109695fce210SBarry Smith + incoming - group of origin processes for incoming edges (leaves that reference my roots) 109795fce210SBarry Smith - outgoing - group of destination processes for outgoing edges (roots that I reference) 109895fce210SBarry Smith 109995fce210SBarry Smith Level: developer 110095fce210SBarry Smith 1101cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFGetWindow()`, `PetscSFRestoreWindow()` 110295fce210SBarry Smith @*/ 1103d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFGetGroups(PetscSF sf, MPI_Group *incoming, MPI_Group *outgoing) 1104d71ae5a4SJacob Faibussowitsch { 11057fb8a5e4SKarl Rupp MPI_Group group = MPI_GROUP_NULL; 110695fce210SBarry Smith 110795fce210SBarry Smith PetscFunctionBegin; 110808401ef6SPierre Jolivet PetscCheck(sf->nranks >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Must call PetscSFSetUpRanks() before obtaining groups"); 110995fce210SBarry Smith if (sf->ingroup == MPI_GROUP_NULL) { 111095fce210SBarry Smith PetscInt i; 111195fce210SBarry Smith const PetscInt *indegree; 111295fce210SBarry Smith PetscMPIInt rank, *outranks, *inranks; 111395fce210SBarry Smith PetscSFNode *remote; 111495fce210SBarry Smith PetscSF bgcount; 111595fce210SBarry Smith 111695fce210SBarry Smith /* Compute the number of incoming ranks */ 11179566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(sf->nranks, &remote)); 111895fce210SBarry Smith for (i = 0; i < sf->nranks; i++) { 111995fce210SBarry Smith remote[i].rank = sf->ranks[i]; 112095fce210SBarry Smith remote[i].index = 0; 112195fce210SBarry Smith } 11229566063dSJacob Faibussowitsch PetscCall(PetscSFDuplicate(sf, PETSCSF_DUPLICATE_CONFONLY, &bgcount)); 11239566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(bgcount, 1, sf->nranks, NULL, PETSC_COPY_VALUES, remote, PETSC_OWN_POINTER)); 11249566063dSJacob Faibussowitsch PetscCall(PetscSFComputeDegreeBegin(bgcount, &indegree)); 11259566063dSJacob Faibussowitsch PetscCall(PetscSFComputeDegreeEnd(bgcount, &indegree)); 112695fce210SBarry Smith /* Enumerate the incoming ranks */ 11279566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(indegree[0], &inranks, sf->nranks, &outranks)); 11289566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)sf), &rank)); 112995fce210SBarry Smith for (i = 0; i < sf->nranks; i++) outranks[i] = rank; 11309566063dSJacob Faibussowitsch PetscCall(PetscSFGatherBegin(bgcount, MPI_INT, outranks, inranks)); 11319566063dSJacob Faibussowitsch PetscCall(PetscSFGatherEnd(bgcount, MPI_INT, outranks, inranks)); 11329566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_group(PetscObjectComm((PetscObject)sf), &group)); 11339566063dSJacob Faibussowitsch PetscCallMPI(MPI_Group_incl(group, indegree[0], inranks, &sf->ingroup)); 11349566063dSJacob Faibussowitsch PetscCallMPI(MPI_Group_free(&group)); 11359566063dSJacob Faibussowitsch PetscCall(PetscFree2(inranks, outranks)); 11369566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&bgcount)); 113795fce210SBarry Smith } 113895fce210SBarry Smith *incoming = sf->ingroup; 113995fce210SBarry Smith 114095fce210SBarry Smith if (sf->outgroup == MPI_GROUP_NULL) { 11419566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_group(PetscObjectComm((PetscObject)sf), &group)); 11429566063dSJacob Faibussowitsch PetscCallMPI(MPI_Group_incl(group, sf->nranks, sf->ranks, &sf->outgroup)); 11439566063dSJacob Faibussowitsch PetscCallMPI(MPI_Group_free(&group)); 114495fce210SBarry Smith } 114595fce210SBarry Smith *outgoing = sf->outgroup; 114695fce210SBarry Smith PetscFunctionReturn(0); 114795fce210SBarry Smith } 114895fce210SBarry Smith 114929046d53SLisandro Dalcin /*@ 1150cab54364SBarry Smith PetscSFGetMultiSF - gets the inner `PetscSF` implementing gathers and scatters 115195fce210SBarry Smith 115295fce210SBarry Smith Collective 115395fce210SBarry Smith 11544165533cSJose E. Roman Input Parameter: 115595fce210SBarry Smith . sf - star forest that may contain roots with 0 or with more than 1 vertex 115695fce210SBarry Smith 11574165533cSJose E. Roman Output Parameter: 115895fce210SBarry Smith . multi - star forest with split roots, such that each root has degree exactly 1 115995fce210SBarry Smith 116095fce210SBarry Smith Level: developer 116195fce210SBarry Smith 1162cab54364SBarry Smith Note: 1163cab54364SBarry Smith In most cases, users should use `PetscSFGatherBegin()` and `PetscSFScatterBegin()` instead of manipulating multi 116495fce210SBarry Smith directly. Since multi satisfies the stronger condition that each entry in the global space has exactly one incoming 116595fce210SBarry Smith edge, it is a candidate for future optimization that might involve its removal. 116695fce210SBarry Smith 1167cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFSetGraph()`, `PetscSFGatherBegin()`, `PetscSFScatterBegin()`, `PetscSFComputeMultiRootOriginalNumbering()` 116895fce210SBarry Smith @*/ 1169d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFGetMultiSF(PetscSF sf, PetscSF *multi) 1170d71ae5a4SJacob Faibussowitsch { 117195fce210SBarry Smith PetscFunctionBegin; 117295fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 117395fce210SBarry Smith PetscValidPointer(multi, 2); 117495fce210SBarry Smith if (sf->nroots < 0) { /* Graph has not been set yet; why do we need this? */ 11759566063dSJacob Faibussowitsch PetscCall(PetscSFDuplicate(sf, PETSCSF_DUPLICATE_RANKS, &sf->multi)); 117695fce210SBarry Smith *multi = sf->multi; 1177013b3241SStefano Zampini sf->multi->multi = sf->multi; 117895fce210SBarry Smith PetscFunctionReturn(0); 117995fce210SBarry Smith } 118095fce210SBarry Smith if (!sf->multi) { 118195fce210SBarry Smith const PetscInt *indegree; 11829837ea96SMatthew G. Knepley PetscInt i, *inoffset, *outones, *outoffset, maxlocal; 118395fce210SBarry Smith PetscSFNode *remote; 118429046d53SLisandro Dalcin maxlocal = sf->maxleaf + 1; /* TODO: We should use PetscSFGetLeafRange() */ 11859566063dSJacob Faibussowitsch PetscCall(PetscSFComputeDegreeBegin(sf, &indegree)); 11869566063dSJacob Faibussowitsch PetscCall(PetscSFComputeDegreeEnd(sf, &indegree)); 11879566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(sf->nroots + 1, &inoffset, maxlocal, &outones, maxlocal, &outoffset)); 118895fce210SBarry Smith inoffset[0] = 0; 118995fce210SBarry Smith for (i = 0; i < sf->nroots; i++) inoffset[i + 1] = inoffset[i] + indegree[i]; 11909837ea96SMatthew G. Knepley for (i = 0; i < maxlocal; i++) outones[i] = 1; 11919566063dSJacob Faibussowitsch PetscCall(PetscSFFetchAndOpBegin(sf, MPIU_INT, inoffset, outones, outoffset, MPI_SUM)); 11929566063dSJacob Faibussowitsch PetscCall(PetscSFFetchAndOpEnd(sf, MPIU_INT, inoffset, outones, outoffset, MPI_SUM)); 119395fce210SBarry Smith for (i = 0; i < sf->nroots; i++) inoffset[i] -= indegree[i]; /* Undo the increment */ 119476bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { /* Check that the expected number of increments occurred */ 1195ad540459SPierre Jolivet for (i = 0; i < sf->nroots; i++) PetscCheck(inoffset[i] + indegree[i] == inoffset[i + 1], PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect result after PetscSFFetchAndOp"); 119676bd3646SJed Brown } 11979566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(sf->nleaves, &remote)); 119895fce210SBarry Smith for (i = 0; i < sf->nleaves; i++) { 119995fce210SBarry Smith remote[i].rank = sf->remote[i].rank; 120038e7336fSToby Isaac remote[i].index = outoffset[sf->mine ? sf->mine[i] : i]; 120195fce210SBarry Smith } 12029566063dSJacob Faibussowitsch PetscCall(PetscSFDuplicate(sf, PETSCSF_DUPLICATE_RANKS, &sf->multi)); 1203013b3241SStefano Zampini sf->multi->multi = sf->multi; 12049566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf->multi, inoffset[sf->nroots], sf->nleaves, sf->mine, PETSC_COPY_VALUES, remote, PETSC_OWN_POINTER)); 120595fce210SBarry Smith if (sf->rankorder) { /* Sort the ranks */ 120695fce210SBarry Smith PetscMPIInt rank; 120795fce210SBarry Smith PetscInt *inranks, *newoffset, *outranks, *newoutoffset, *tmpoffset, maxdegree; 120895fce210SBarry Smith PetscSFNode *newremote; 12099566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)sf), &rank)); 121095fce210SBarry Smith for (i = 0, maxdegree = 0; i < sf->nroots; i++) maxdegree = PetscMax(maxdegree, indegree[i]); 12119566063dSJacob Faibussowitsch PetscCall(PetscMalloc5(sf->multi->nroots, &inranks, sf->multi->nroots, &newoffset, maxlocal, &outranks, maxlocal, &newoutoffset, maxdegree, &tmpoffset)); 12129837ea96SMatthew G. Knepley for (i = 0; i < maxlocal; i++) outranks[i] = rank; 12139566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sf->multi, MPIU_INT, outranks, inranks, MPI_REPLACE)); 12149566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf->multi, MPIU_INT, outranks, inranks, MPI_REPLACE)); 121595fce210SBarry Smith /* Sort the incoming ranks at each vertex, build the inverse map */ 121695fce210SBarry Smith for (i = 0; i < sf->nroots; i++) { 121795fce210SBarry Smith PetscInt j; 121895fce210SBarry Smith for (j = 0; j < indegree[i]; j++) tmpoffset[j] = j; 12199566063dSJacob Faibussowitsch PetscCall(PetscSortIntWithArray(indegree[i], inranks + inoffset[i], tmpoffset)); 122095fce210SBarry Smith for (j = 0; j < indegree[i]; j++) newoffset[inoffset[i] + tmpoffset[j]] = inoffset[i] + j; 122195fce210SBarry Smith } 12229566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf->multi, MPIU_INT, newoffset, newoutoffset, MPI_REPLACE)); 12239566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf->multi, MPIU_INT, newoffset, newoutoffset, MPI_REPLACE)); 12249566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(sf->nleaves, &newremote)); 122595fce210SBarry Smith for (i = 0; i < sf->nleaves; i++) { 122695fce210SBarry Smith newremote[i].rank = sf->remote[i].rank; 122701365b40SToby Isaac newremote[i].index = newoutoffset[sf->mine ? sf->mine[i] : i]; 122895fce210SBarry Smith } 12299566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf->multi, inoffset[sf->nroots], sf->nleaves, sf->mine, PETSC_COPY_VALUES, newremote, PETSC_OWN_POINTER)); 12309566063dSJacob Faibussowitsch PetscCall(PetscFree5(inranks, newoffset, outranks, newoutoffset, tmpoffset)); 123195fce210SBarry Smith } 12329566063dSJacob Faibussowitsch PetscCall(PetscFree3(inoffset, outones, outoffset)); 123395fce210SBarry Smith } 123495fce210SBarry Smith *multi = sf->multi; 123595fce210SBarry Smith PetscFunctionReturn(0); 123695fce210SBarry Smith } 123795fce210SBarry Smith 123895fce210SBarry Smith /*@C 123972502a1fSJunchao Zhang PetscSFCreateEmbeddedRootSF - removes edges from all but the selected roots, does not remap indices 124095fce210SBarry Smith 124195fce210SBarry Smith Collective 124295fce210SBarry Smith 12434165533cSJose E. Roman Input Parameters: 124495fce210SBarry Smith + sf - original star forest 1245ba2a7774SJunchao Zhang . nselected - number of selected roots on this process 1246ba2a7774SJunchao Zhang - selected - indices of the selected roots on this process 124795fce210SBarry Smith 12484165533cSJose E. Roman Output Parameter: 1249cd620004SJunchao Zhang . esf - new star forest 125095fce210SBarry Smith 125195fce210SBarry Smith Level: advanced 125295fce210SBarry Smith 125395fce210SBarry Smith Note: 1254cab54364SBarry Smith To use the new `PetscSF`, it may be necessary to know the indices of the leaves that are still participating. This can 125595fce210SBarry Smith be done by calling PetscSFGetGraph(). 125695fce210SBarry Smith 1257cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFSetGraph()`, `PetscSFGetGraph()` 125895fce210SBarry Smith @*/ 1259d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFCreateEmbeddedRootSF(PetscSF sf, PetscInt nselected, const PetscInt *selected, PetscSF *esf) 1260d71ae5a4SJacob Faibussowitsch { 1261cd620004SJunchao Zhang PetscInt i, j, n, nroots, nleaves, esf_nleaves, *new_ilocal, minleaf, maxleaf, maxlocal; 1262cd620004SJunchao Zhang const PetscInt *ilocal; 1263cd620004SJunchao Zhang signed char *rootdata, *leafdata, *leafmem; 1264ba2a7774SJunchao Zhang const PetscSFNode *iremote; 1265f659e5c7SJunchao Zhang PetscSFNode *new_iremote; 1266f659e5c7SJunchao Zhang MPI_Comm comm; 126795fce210SBarry Smith 126895fce210SBarry Smith PetscFunctionBegin; 126995fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 127029046d53SLisandro Dalcin PetscSFCheckGraphSet(sf, 1); 1271dadcf809SJacob Faibussowitsch if (nselected) PetscValidIntPointer(selected, 3); 1272cd620004SJunchao Zhang PetscValidPointer(esf, 4); 12730511a646SMatthew G. Knepley 12749566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 12759566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(PETSCSF_EmbedSF, sf, 0, 0, 0)); 12769566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)sf, &comm)); 12779566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sf, &nroots, &nleaves, &ilocal, &iremote)); 1278cd620004SJunchao Zhang 127976bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { /* Error out if selected[] has dups or out of range indices */ 1280cd620004SJunchao Zhang PetscBool dups; 12819566063dSJacob Faibussowitsch PetscCall(PetscCheckDupsInt(nselected, selected, &dups)); 128228b400f6SJacob Faibussowitsch PetscCheck(!dups, comm, PETSC_ERR_ARG_WRONG, "selected[] has dups"); 12839371c9d4SSatish Balay for (i = 0; i < nselected; i++) PetscCheck(selected[i] >= 0 && selected[i] < nroots, comm, PETSC_ERR_ARG_OUTOFRANGE, "selected root indice %" PetscInt_FMT " is out of [0,%" PetscInt_FMT ")", selected[i], nroots); 1284cd620004SJunchao Zhang } 1285f659e5c7SJunchao Zhang 1286dbbe0bcdSBarry Smith if (sf->ops->CreateEmbeddedRootSF) PetscUseTypeMethod(sf, CreateEmbeddedRootSF, nselected, selected, esf); 1287dbbe0bcdSBarry Smith else { 1288cd620004SJunchao Zhang /* A generic version of creating embedded sf */ 12899566063dSJacob Faibussowitsch PetscCall(PetscSFGetLeafRange(sf, &minleaf, &maxleaf)); 1290cd620004SJunchao Zhang maxlocal = maxleaf - minleaf + 1; 12919566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(nroots, &rootdata, maxlocal, &leafmem)); 1292cd620004SJunchao Zhang leafdata = leafmem - minleaf; 1293cd620004SJunchao Zhang /* Tag selected roots and bcast to leaves */ 1294cd620004SJunchao Zhang for (i = 0; i < nselected; i++) rootdata[selected[i]] = 1; 12959566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPI_SIGNED_CHAR, rootdata, leafdata, MPI_REPLACE)); 12969566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPI_SIGNED_CHAR, rootdata, leafdata, MPI_REPLACE)); 1297ba2a7774SJunchao Zhang 1298cd620004SJunchao Zhang /* Build esf with leaves that are still connected */ 1299cd620004SJunchao Zhang esf_nleaves = 0; 1300cd620004SJunchao Zhang for (i = 0; i < nleaves; i++) { 1301cd620004SJunchao Zhang j = ilocal ? ilocal[i] : i; 1302cd620004SJunchao Zhang /* esf_nleaves += leafdata[j] should work in theory, but failed with SFWindow bugs 1303cd620004SJunchao Zhang with PetscSFBcast. See https://gitlab.com/petsc/petsc/issues/555 1304cd620004SJunchao Zhang */ 1305cd620004SJunchao Zhang esf_nleaves += (leafdata[j] ? 1 : 0); 1306cd620004SJunchao Zhang } 13079566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(esf_nleaves, &new_ilocal)); 13089566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(esf_nleaves, &new_iremote)); 1309cd620004SJunchao Zhang for (i = n = 0; i < nleaves; i++) { 1310cd620004SJunchao Zhang j = ilocal ? ilocal[i] : i; 1311cd620004SJunchao Zhang if (leafdata[j]) { 1312cd620004SJunchao Zhang new_ilocal[n] = j; 1313cd620004SJunchao Zhang new_iremote[n].rank = iremote[i].rank; 1314cd620004SJunchao Zhang new_iremote[n].index = iremote[i].index; 1315fc1ede2bSMatthew G. Knepley ++n; 131695fce210SBarry Smith } 131795fce210SBarry Smith } 13189566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, esf)); 13199566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(*esf)); 13209566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(*esf, nroots, esf_nleaves, new_ilocal, PETSC_OWN_POINTER, new_iremote, PETSC_OWN_POINTER)); 13219566063dSJacob Faibussowitsch PetscCall(PetscFree2(rootdata, leafmem)); 1322f659e5c7SJunchao Zhang } 13239566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(PETSCSF_EmbedSF, sf, 0, 0, 0)); 132495fce210SBarry Smith PetscFunctionReturn(0); 132595fce210SBarry Smith } 132695fce210SBarry Smith 13272f5fb4c2SMatthew G. Knepley /*@C 13282f5fb4c2SMatthew G. Knepley PetscSFCreateEmbeddedLeafSF - removes edges from all but the selected leaves, does not remap indices 13292f5fb4c2SMatthew G. Knepley 13302f5fb4c2SMatthew G. Knepley Collective 13312f5fb4c2SMatthew G. Knepley 13324165533cSJose E. Roman Input Parameters: 13332f5fb4c2SMatthew G. Knepley + sf - original star forest 1334f659e5c7SJunchao Zhang . nselected - number of selected leaves on this process 1335f659e5c7SJunchao Zhang - selected - indices of the selected leaves on this process 13362f5fb4c2SMatthew G. Knepley 13374165533cSJose E. Roman Output Parameter: 13382f5fb4c2SMatthew G. Knepley . newsf - new star forest 13392f5fb4c2SMatthew G. Knepley 13402f5fb4c2SMatthew G. Knepley Level: advanced 13412f5fb4c2SMatthew G. Knepley 1342cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFCreateEmbeddedRootSF()`, `PetscSFSetGraph()`, `PetscSFGetGraph()` 13432f5fb4c2SMatthew G. Knepley @*/ 1344d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFCreateEmbeddedLeafSF(PetscSF sf, PetscInt nselected, const PetscInt *selected, PetscSF *newsf) 1345d71ae5a4SJacob Faibussowitsch { 1346f659e5c7SJunchao Zhang const PetscSFNode *iremote; 1347f659e5c7SJunchao Zhang PetscSFNode *new_iremote; 1348f659e5c7SJunchao Zhang const PetscInt *ilocal; 1349f659e5c7SJunchao Zhang PetscInt i, nroots, *leaves, *new_ilocal; 1350f659e5c7SJunchao Zhang MPI_Comm comm; 13512f5fb4c2SMatthew G. Knepley 13522f5fb4c2SMatthew G. Knepley PetscFunctionBegin; 13532f5fb4c2SMatthew G. Knepley PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 135429046d53SLisandro Dalcin PetscSFCheckGraphSet(sf, 1); 1355dadcf809SJacob Faibussowitsch if (nselected) PetscValidIntPointer(selected, 3); 13562f5fb4c2SMatthew G. Knepley PetscValidPointer(newsf, 4); 13572f5fb4c2SMatthew G. Knepley 1358f659e5c7SJunchao Zhang /* Uniq selected[] and put results in leaves[] */ 13599566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)sf, &comm)); 13609566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nselected, &leaves)); 13619566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(leaves, selected, nselected)); 13629566063dSJacob Faibussowitsch PetscCall(PetscSortedRemoveDupsInt(&nselected, leaves)); 136308401ef6SPierre Jolivet PetscCheck(!nselected || !(leaves[0] < 0 || leaves[nselected - 1] >= sf->nleaves), comm, PETSC_ERR_ARG_OUTOFRANGE, "Min/Max leaf indices %" PetscInt_FMT "/%" PetscInt_FMT " are not in [0,%" PetscInt_FMT ")", leaves[0], leaves[nselected - 1], sf->nleaves); 1364f659e5c7SJunchao Zhang 1365f659e5c7SJunchao Zhang /* Optimize the routine only when sf is setup and hence we can reuse sf's communication pattern */ 1366dbbe0bcdSBarry Smith if (sf->setupcalled && sf->ops->CreateEmbeddedLeafSF) PetscUseTypeMethod(sf, CreateEmbeddedLeafSF, nselected, leaves, newsf); 1367dbbe0bcdSBarry Smith else { 13689566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sf, &nroots, NULL, &ilocal, &iremote)); 13699566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nselected, &new_ilocal)); 13709566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nselected, &new_iremote)); 1371f659e5c7SJunchao Zhang for (i = 0; i < nselected; ++i) { 1372f659e5c7SJunchao Zhang const PetscInt l = leaves[i]; 1373f659e5c7SJunchao Zhang new_ilocal[i] = ilocal ? ilocal[l] : l; 1374f659e5c7SJunchao Zhang new_iremote[i].rank = iremote[l].rank; 1375f659e5c7SJunchao Zhang new_iremote[i].index = iremote[l].index; 13762f5fb4c2SMatthew G. Knepley } 13779566063dSJacob Faibussowitsch PetscCall(PetscSFDuplicate(sf, PETSCSF_DUPLICATE_CONFONLY, newsf)); 13789566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(*newsf, nroots, nselected, new_ilocal, PETSC_OWN_POINTER, new_iremote, PETSC_OWN_POINTER)); 1379f659e5c7SJunchao Zhang } 13809566063dSJacob Faibussowitsch PetscCall(PetscFree(leaves)); 13812f5fb4c2SMatthew G. Knepley PetscFunctionReturn(0); 13822f5fb4c2SMatthew G. Knepley } 13832f5fb4c2SMatthew G. Knepley 138495fce210SBarry Smith /*@C 1385cab54364SBarry Smith PetscSFBcastBegin - begin pointwise broadcast with root value being reduced to leaf value, to be concluded with call to `PetscSFBcastEnd()` 13863482bfa8SJunchao Zhang 1387cab54364SBarry Smith Collective on sf 13883482bfa8SJunchao Zhang 13894165533cSJose E. Roman Input Parameters: 13903482bfa8SJunchao Zhang + sf - star forest on which to communicate 13913482bfa8SJunchao Zhang . unit - data type associated with each node 13923482bfa8SJunchao Zhang . rootdata - buffer to broadcast 13933482bfa8SJunchao Zhang - op - operation to use for reduction 13943482bfa8SJunchao Zhang 13954165533cSJose E. Roman Output Parameter: 13963482bfa8SJunchao Zhang . leafdata - buffer to be reduced with values from each leaf's respective root 13973482bfa8SJunchao Zhang 13983482bfa8SJunchao Zhang Level: intermediate 13993482bfa8SJunchao Zhang 1400d0295fc0SJunchao Zhang Notes: 1401d0295fc0SJunchao Zhang When petsc is configured with device support, it will use its own mechanism to figure out whether the given data pointers 1402d0295fc0SJunchao Zhang are host pointers or device pointers, which may incur a noticable cost. If you already knew the info, you should 1403cab54364SBarry Smith use `PetscSFBcastWithMemTypeBegin()` instead. 1404cab54364SBarry Smith 1405cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFBcastEnd()`, `PetscSFBcastWithMemTypeBegin()` 14063482bfa8SJunchao Zhang @*/ 1407d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFBcastBegin(PetscSF sf, MPI_Datatype unit, const void *rootdata, void *leafdata, MPI_Op op) 1408d71ae5a4SJacob Faibussowitsch { 1409eb02082bSJunchao Zhang PetscMemType rootmtype, leafmtype; 14103482bfa8SJunchao Zhang 14113482bfa8SJunchao Zhang PetscFunctionBegin; 14123482bfa8SJunchao Zhang PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 14139566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 14149566063dSJacob Faibussowitsch if (!sf->vscat.logging) PetscCall(PetscLogEventBegin(PETSCSF_BcastBegin, sf, 0, 0, 0)); 14159566063dSJacob Faibussowitsch PetscCall(PetscGetMemType(rootdata, &rootmtype)); 14169566063dSJacob Faibussowitsch PetscCall(PetscGetMemType(leafdata, &leafmtype)); 1417dbbe0bcdSBarry Smith PetscUseTypeMethod(sf, BcastBegin, unit, rootmtype, rootdata, leafmtype, leafdata, op); 14189566063dSJacob Faibussowitsch if (!sf->vscat.logging) PetscCall(PetscLogEventEnd(PETSCSF_BcastBegin, sf, 0, 0, 0)); 14193482bfa8SJunchao Zhang PetscFunctionReturn(0); 14203482bfa8SJunchao Zhang } 14213482bfa8SJunchao Zhang 14223482bfa8SJunchao Zhang /*@C 1423cab54364SBarry Smith PetscSFBcastWithMemTypeBegin - begin pointwise broadcast with root value being reduced to leaf value with explicit memory types, to be concluded with call to `PetscSFBcastEnd()` 1424d0295fc0SJunchao Zhang 1425cab54364SBarry Smith Collective on sf 1426d0295fc0SJunchao Zhang 14274165533cSJose E. Roman Input Parameters: 1428d0295fc0SJunchao Zhang + sf - star forest on which to communicate 1429d0295fc0SJunchao Zhang . unit - data type associated with each node 1430d0295fc0SJunchao Zhang . rootmtype - memory type of rootdata 1431d0295fc0SJunchao Zhang . rootdata - buffer to broadcast 1432d0295fc0SJunchao Zhang . leafmtype - memory type of leafdata 1433d0295fc0SJunchao Zhang - op - operation to use for reduction 1434d0295fc0SJunchao Zhang 14354165533cSJose E. Roman Output Parameter: 1436d0295fc0SJunchao Zhang . leafdata - buffer to be reduced with values from each leaf's respective root 1437d0295fc0SJunchao Zhang 1438d0295fc0SJunchao Zhang Level: intermediate 1439d0295fc0SJunchao Zhang 1440cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFBcastEnd()`, `PetscSFBcastBegin()` 1441d0295fc0SJunchao Zhang @*/ 1442d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFBcastWithMemTypeBegin(PetscSF sf, MPI_Datatype unit, PetscMemType rootmtype, const void *rootdata, PetscMemType leafmtype, void *leafdata, MPI_Op op) 1443d71ae5a4SJacob Faibussowitsch { 1444d0295fc0SJunchao Zhang PetscFunctionBegin; 1445d0295fc0SJunchao Zhang PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 14469566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 14479566063dSJacob Faibussowitsch if (!sf->vscat.logging) PetscCall(PetscLogEventBegin(PETSCSF_BcastBegin, sf, 0, 0, 0)); 1448dbbe0bcdSBarry Smith PetscUseTypeMethod(sf, BcastBegin, unit, rootmtype, rootdata, leafmtype, leafdata, op); 14499566063dSJacob Faibussowitsch if (!sf->vscat.logging) PetscCall(PetscLogEventEnd(PETSCSF_BcastBegin, sf, 0, 0, 0)); 1450d0295fc0SJunchao Zhang PetscFunctionReturn(0); 1451d0295fc0SJunchao Zhang } 1452d0295fc0SJunchao Zhang 1453d0295fc0SJunchao Zhang /*@C 1454cab54364SBarry Smith PetscSFBcastEnd - end a broadcast & reduce operation started with `PetscSFBcastBegin()` 14553482bfa8SJunchao Zhang 14563482bfa8SJunchao Zhang Collective 14573482bfa8SJunchao Zhang 14584165533cSJose E. Roman Input Parameters: 14593482bfa8SJunchao Zhang + sf - star forest 14603482bfa8SJunchao Zhang . unit - data type 14613482bfa8SJunchao Zhang . rootdata - buffer to broadcast 14623482bfa8SJunchao Zhang - op - operation to use for reduction 14633482bfa8SJunchao Zhang 14644165533cSJose E. Roman Output Parameter: 14653482bfa8SJunchao Zhang . leafdata - buffer to be reduced with values from each leaf's respective root 14663482bfa8SJunchao Zhang 14673482bfa8SJunchao Zhang Level: intermediate 14683482bfa8SJunchao Zhang 1469cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFSetGraph()`, `PetscSFReduceEnd()` 14703482bfa8SJunchao Zhang @*/ 1471d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFBcastEnd(PetscSF sf, MPI_Datatype unit, const void *rootdata, void *leafdata, MPI_Op op) 1472d71ae5a4SJacob Faibussowitsch { 14733482bfa8SJunchao Zhang PetscFunctionBegin; 14743482bfa8SJunchao Zhang PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 14759566063dSJacob Faibussowitsch if (!sf->vscat.logging) PetscCall(PetscLogEventBegin(PETSCSF_BcastEnd, sf, 0, 0, 0)); 1476dbbe0bcdSBarry Smith PetscUseTypeMethod(sf, BcastEnd, unit, rootdata, leafdata, op); 14779566063dSJacob Faibussowitsch if (!sf->vscat.logging) PetscCall(PetscLogEventEnd(PETSCSF_BcastEnd, sf, 0, 0, 0)); 14783482bfa8SJunchao Zhang PetscFunctionReturn(0); 14793482bfa8SJunchao Zhang } 14803482bfa8SJunchao Zhang 14813482bfa8SJunchao Zhang /*@C 1482cab54364SBarry Smith PetscSFReduceBegin - begin reduction of leafdata into rootdata, to be completed with call to `PetscSFReduceEnd()` 148395fce210SBarry Smith 148495fce210SBarry Smith Collective 148595fce210SBarry Smith 14864165533cSJose E. Roman Input Parameters: 148795fce210SBarry Smith + sf - star forest 148895fce210SBarry Smith . unit - data type 148995fce210SBarry Smith . leafdata - values to reduce 149095fce210SBarry Smith - op - reduction operation 149195fce210SBarry Smith 14924165533cSJose E. Roman Output Parameter: 149395fce210SBarry Smith . rootdata - result of reduction of values from all leaves of each root 149495fce210SBarry Smith 149595fce210SBarry Smith Level: intermediate 149695fce210SBarry Smith 1497d0295fc0SJunchao Zhang Notes: 1498d0295fc0SJunchao Zhang When petsc is configured with device support, it will use its own mechanism to figure out whether the given data pointers 1499d0295fc0SJunchao Zhang are host pointers or device pointers, which may incur a noticable cost. If you already knew the info, you should 1500cab54364SBarry Smith use `PetscSFReduceWithMemTypeBegin()` instead. 1501d0295fc0SJunchao Zhang 1502cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFBcastBegin()`, `PetscSFReduceWithMemTypeBegin()` 150395fce210SBarry Smith @*/ 1504d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFReduceBegin(PetscSF sf, MPI_Datatype unit, const void *leafdata, void *rootdata, MPI_Op op) 1505d71ae5a4SJacob Faibussowitsch { 1506eb02082bSJunchao Zhang PetscMemType rootmtype, leafmtype; 150795fce210SBarry Smith 150895fce210SBarry Smith PetscFunctionBegin; 150995fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 15109566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 15119566063dSJacob Faibussowitsch if (!sf->vscat.logging) PetscCall(PetscLogEventBegin(PETSCSF_ReduceBegin, sf, 0, 0, 0)); 15129566063dSJacob Faibussowitsch PetscCall(PetscGetMemType(rootdata, &rootmtype)); 15139566063dSJacob Faibussowitsch PetscCall(PetscGetMemType(leafdata, &leafmtype)); 15149566063dSJacob Faibussowitsch PetscCall((sf->ops->ReduceBegin)(sf, unit, leafmtype, leafdata, rootmtype, rootdata, op)); 15159566063dSJacob Faibussowitsch if (!sf->vscat.logging) PetscCall(PetscLogEventEnd(PETSCSF_ReduceBegin, sf, 0, 0, 0)); 151695fce210SBarry Smith PetscFunctionReturn(0); 151795fce210SBarry Smith } 151895fce210SBarry Smith 151995fce210SBarry Smith /*@C 1520cab54364SBarry Smith PetscSFReduceWithMemTypeBegin - begin reduction of leafdata into rootdata with explicit memory types, to be completed with call to `PetscSFReduceEnd()` 1521d0295fc0SJunchao Zhang 1522d0295fc0SJunchao Zhang Collective 1523d0295fc0SJunchao Zhang 15244165533cSJose E. Roman Input Parameters: 1525d0295fc0SJunchao Zhang + sf - star forest 1526d0295fc0SJunchao Zhang . unit - data type 1527d0295fc0SJunchao Zhang . leafmtype - memory type of leafdata 1528d0295fc0SJunchao Zhang . leafdata - values to reduce 1529d0295fc0SJunchao Zhang . rootmtype - memory type of rootdata 1530d0295fc0SJunchao Zhang - op - reduction operation 1531d0295fc0SJunchao Zhang 15324165533cSJose E. Roman Output Parameter: 1533d0295fc0SJunchao Zhang . rootdata - result of reduction of values from all leaves of each root 1534d0295fc0SJunchao Zhang 1535d0295fc0SJunchao Zhang Level: intermediate 1536d0295fc0SJunchao Zhang 1537cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFBcastBegin()`, `PetscSFReduceBegin()` 1538d0295fc0SJunchao Zhang @*/ 1539d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFReduceWithMemTypeBegin(PetscSF sf, MPI_Datatype unit, PetscMemType leafmtype, const void *leafdata, PetscMemType rootmtype, void *rootdata, MPI_Op op) 1540d71ae5a4SJacob Faibussowitsch { 1541d0295fc0SJunchao Zhang PetscFunctionBegin; 1542d0295fc0SJunchao Zhang PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 15439566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 15449566063dSJacob Faibussowitsch if (!sf->vscat.logging) PetscCall(PetscLogEventBegin(PETSCSF_ReduceBegin, sf, 0, 0, 0)); 15459566063dSJacob Faibussowitsch PetscCall((sf->ops->ReduceBegin)(sf, unit, leafmtype, leafdata, rootmtype, rootdata, op)); 15469566063dSJacob Faibussowitsch if (!sf->vscat.logging) PetscCall(PetscLogEventEnd(PETSCSF_ReduceBegin, sf, 0, 0, 0)); 1547d0295fc0SJunchao Zhang PetscFunctionReturn(0); 1548d0295fc0SJunchao Zhang } 1549d0295fc0SJunchao Zhang 1550d0295fc0SJunchao Zhang /*@C 1551cab54364SBarry Smith PetscSFReduceEnd - end a reduction operation started with `PetscSFReduceBegin()` 155295fce210SBarry Smith 155395fce210SBarry Smith Collective 155495fce210SBarry Smith 15554165533cSJose E. Roman Input Parameters: 155695fce210SBarry Smith + sf - star forest 155795fce210SBarry Smith . unit - data type 155895fce210SBarry Smith . leafdata - values to reduce 155995fce210SBarry Smith - op - reduction operation 156095fce210SBarry Smith 15614165533cSJose E. Roman Output Parameter: 156295fce210SBarry Smith . rootdata - result of reduction of values from all leaves of each root 156395fce210SBarry Smith 156495fce210SBarry Smith Level: intermediate 156595fce210SBarry Smith 1566cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFSetGraph()`, `PetscSFBcastEnd()` 156795fce210SBarry Smith @*/ 1568d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFReduceEnd(PetscSF sf, MPI_Datatype unit, const void *leafdata, void *rootdata, MPI_Op op) 1569d71ae5a4SJacob Faibussowitsch { 157095fce210SBarry Smith PetscFunctionBegin; 157195fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 15729566063dSJacob Faibussowitsch if (!sf->vscat.logging) PetscCall(PetscLogEventBegin(PETSCSF_ReduceEnd, sf, 0, 0, 0)); 1573dbbe0bcdSBarry Smith PetscUseTypeMethod(sf, ReduceEnd, unit, leafdata, rootdata, op); 15749566063dSJacob Faibussowitsch if (!sf->vscat.logging) PetscCall(PetscLogEventEnd(PETSCSF_ReduceEnd, sf, 0, 0, 0)); 157595fce210SBarry Smith PetscFunctionReturn(0); 157695fce210SBarry Smith } 157795fce210SBarry Smith 157895fce210SBarry Smith /*@C 1579cab54364SBarry Smith PetscSFFetchAndOpBegin - begin operation that fetches values from root and updates atomically by applying operation using my leaf value, 1580cab54364SBarry Smith to be completed with `PetscSFFetchAndOpEnd()` 1581a1729e3fSJunchao Zhang 1582a1729e3fSJunchao Zhang Collective 1583a1729e3fSJunchao Zhang 15844165533cSJose E. Roman Input Parameters: 1585a1729e3fSJunchao Zhang + sf - star forest 1586a1729e3fSJunchao Zhang . unit - data type 1587a1729e3fSJunchao Zhang . leafdata - leaf values to use in reduction 1588a1729e3fSJunchao Zhang - op - operation to use for reduction 1589a1729e3fSJunchao Zhang 15904165533cSJose E. Roman Output Parameters: 1591a1729e3fSJunchao Zhang + rootdata - root values to be updated, input state is seen by first process to perform an update 1592a1729e3fSJunchao Zhang - leafupdate - state at each leaf's respective root immediately prior to my atomic update 1593a1729e3fSJunchao Zhang 1594a1729e3fSJunchao Zhang Level: advanced 1595a1729e3fSJunchao Zhang 1596a1729e3fSJunchao Zhang Note: 1597a1729e3fSJunchao Zhang The update is only atomic at the granularity provided by the hardware. Different roots referenced by the same process 1598a1729e3fSJunchao Zhang might be updated in a different order. Furthermore, if a composite type is used for the unit datatype, atomicity is 1599a1729e3fSJunchao Zhang not guaranteed across the whole vertex. Therefore, this function is mostly only used with primitive types such as 1600a1729e3fSJunchao Zhang integers. 1601a1729e3fSJunchao Zhang 1602cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFComputeDegreeBegin()`, `PetscSFReduceBegin()`, `PetscSFSetGraph()` 1603a1729e3fSJunchao Zhang @*/ 1604d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFFetchAndOpBegin(PetscSF sf, MPI_Datatype unit, void *rootdata, const void *leafdata, void *leafupdate, MPI_Op op) 1605d71ae5a4SJacob Faibussowitsch { 1606eb02082bSJunchao Zhang PetscMemType rootmtype, leafmtype, leafupdatemtype; 1607a1729e3fSJunchao Zhang 1608a1729e3fSJunchao Zhang PetscFunctionBegin; 1609a1729e3fSJunchao Zhang PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 16109566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 16119566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(PETSCSF_FetchAndOpBegin, sf, 0, 0, 0)); 16129566063dSJacob Faibussowitsch PetscCall(PetscGetMemType(rootdata, &rootmtype)); 16139566063dSJacob Faibussowitsch PetscCall(PetscGetMemType(leafdata, &leafmtype)); 16149566063dSJacob Faibussowitsch PetscCall(PetscGetMemType(leafupdate, &leafupdatemtype)); 161508401ef6SPierre Jolivet PetscCheck(leafmtype == leafupdatemtype, PETSC_COMM_SELF, PETSC_ERR_SUP, "No support for leafdata and leafupdate in different memory types"); 1616dbbe0bcdSBarry Smith PetscUseTypeMethod(sf, FetchAndOpBegin, unit, rootmtype, rootdata, leafmtype, leafdata, leafupdate, op); 16179566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(PETSCSF_FetchAndOpBegin, sf, 0, 0, 0)); 1618a1729e3fSJunchao Zhang PetscFunctionReturn(0); 1619a1729e3fSJunchao Zhang } 1620a1729e3fSJunchao Zhang 1621a1729e3fSJunchao Zhang /*@C 1622cab54364SBarry Smith PetscSFFetchAndOpWithMemTypeBegin - begin operation with explicit memory types that fetches values from root and updates atomically by 1623cab54364SBarry Smith applying operation using my leaf value, to be completed with `PetscSFFetchAndOpEnd()` 1624d3b3e55cSJunchao Zhang 1625d3b3e55cSJunchao Zhang Collective 1626d3b3e55cSJunchao Zhang 1627d3b3e55cSJunchao Zhang Input Parameters: 1628d3b3e55cSJunchao Zhang + sf - star forest 1629d3b3e55cSJunchao Zhang . unit - data type 1630d3b3e55cSJunchao Zhang . rootmtype - memory type of rootdata 1631d3b3e55cSJunchao Zhang . leafmtype - memory type of leafdata 1632d3b3e55cSJunchao Zhang . leafdata - leaf values to use in reduction 1633d3b3e55cSJunchao Zhang . leafupdatemtype - memory type of leafupdate 1634d3b3e55cSJunchao Zhang - op - operation to use for reduction 1635d3b3e55cSJunchao Zhang 1636d3b3e55cSJunchao Zhang Output Parameters: 1637d3b3e55cSJunchao Zhang + rootdata - root values to be updated, input state is seen by first process to perform an update 1638d3b3e55cSJunchao Zhang - leafupdate - state at each leaf's respective root immediately prior to my atomic update 1639d3b3e55cSJunchao Zhang 1640d3b3e55cSJunchao Zhang Level: advanced 1641d3b3e55cSJunchao Zhang 1642cab54364SBarry Smith Note: 1643cab54364SBarry Smith See `PetscSFFetchAndOpBegin()` for more details. 1644d3b3e55cSJunchao Zhang 1645cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFFetchAndOpBegin()`, `PetscSFComputeDegreeBegin()`, `PetscSFReduceBegin()`, `PetscSFSetGraph()` 1646d3b3e55cSJunchao Zhang @*/ 1647d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFFetchAndOpWithMemTypeBegin(PetscSF sf, MPI_Datatype unit, PetscMemType rootmtype, void *rootdata, PetscMemType leafmtype, const void *leafdata, PetscMemType leafupdatemtype, void *leafupdate, MPI_Op op) 1648d71ae5a4SJacob Faibussowitsch { 1649d3b3e55cSJunchao Zhang PetscFunctionBegin; 1650d3b3e55cSJunchao Zhang PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 16519566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 16529566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(PETSCSF_FetchAndOpBegin, sf, 0, 0, 0)); 165308401ef6SPierre Jolivet PetscCheck(leafmtype == leafupdatemtype, PETSC_COMM_SELF, PETSC_ERR_SUP, "No support for leafdata and leafupdate in different memory types"); 1654dbbe0bcdSBarry Smith PetscUseTypeMethod(sf, FetchAndOpBegin, unit, rootmtype, rootdata, leafmtype, leafdata, leafupdate, op); 16559566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(PETSCSF_FetchAndOpBegin, sf, 0, 0, 0)); 1656d3b3e55cSJunchao Zhang PetscFunctionReturn(0); 1657d3b3e55cSJunchao Zhang } 1658d3b3e55cSJunchao Zhang 1659d3b3e55cSJunchao Zhang /*@C 1660a1729e3fSJunchao Zhang PetscSFFetchAndOpEnd - end operation started in matching call to PetscSFFetchAndOpBegin() to fetch values from roots and update atomically by applying operation using my leaf value 1661a1729e3fSJunchao Zhang 1662a1729e3fSJunchao Zhang Collective 1663a1729e3fSJunchao Zhang 16644165533cSJose E. Roman Input Parameters: 1665a1729e3fSJunchao Zhang + sf - star forest 1666a1729e3fSJunchao Zhang . unit - data type 1667a1729e3fSJunchao Zhang . leafdata - leaf values to use in reduction 1668a1729e3fSJunchao Zhang - op - operation to use for reduction 1669a1729e3fSJunchao Zhang 16704165533cSJose E. Roman Output Parameters: 1671a1729e3fSJunchao Zhang + rootdata - root values to be updated, input state is seen by first process to perform an update 1672a1729e3fSJunchao Zhang - leafupdate - state at each leaf's respective root immediately prior to my atomic update 1673a1729e3fSJunchao Zhang 1674a1729e3fSJunchao Zhang Level: advanced 1675a1729e3fSJunchao Zhang 1676cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFComputeDegreeEnd()`, `PetscSFReduceEnd()`, `PetscSFSetGraph()` 1677a1729e3fSJunchao Zhang @*/ 1678d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFFetchAndOpEnd(PetscSF sf, MPI_Datatype unit, void *rootdata, const void *leafdata, void *leafupdate, MPI_Op op) 1679d71ae5a4SJacob Faibussowitsch { 1680a1729e3fSJunchao Zhang PetscFunctionBegin; 1681a1729e3fSJunchao Zhang PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 16829566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(PETSCSF_FetchAndOpEnd, sf, 0, 0, 0)); 1683dbbe0bcdSBarry Smith PetscUseTypeMethod(sf, FetchAndOpEnd, unit, rootdata, leafdata, leafupdate, op); 16849566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(PETSCSF_FetchAndOpEnd, sf, 0, 0, 0)); 1685a1729e3fSJunchao Zhang PetscFunctionReturn(0); 1686a1729e3fSJunchao Zhang } 1687a1729e3fSJunchao Zhang 1688a1729e3fSJunchao Zhang /*@C 1689cab54364SBarry Smith PetscSFComputeDegreeBegin - begin computation of degree for each root vertex, to be completed with `PetscSFComputeDegreeEnd()` 169095fce210SBarry Smith 169195fce210SBarry Smith Collective 169295fce210SBarry Smith 16934165533cSJose E. Roman Input Parameter: 169495fce210SBarry Smith . sf - star forest 169595fce210SBarry Smith 16964165533cSJose E. Roman Output Parameter: 169795fce210SBarry Smith . degree - degree of each root vertex 169895fce210SBarry Smith 169995fce210SBarry Smith Level: advanced 170095fce210SBarry Smith 1701cab54364SBarry Smith Note: 1702cab54364SBarry Smith The returned array is owned by `PetscSF` and automatically freed by `PetscSFDestroy()`. Hence no need to call `PetscFree()` on it. 1703ffe67aa5SVáclav Hapla 1704cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFGatherBegin()`, `PetscSFComputeDegreeEnd()` 170595fce210SBarry Smith @*/ 1706d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFComputeDegreeBegin(PetscSF sf, const PetscInt **degree) 1707d71ae5a4SJacob Faibussowitsch { 170895fce210SBarry Smith PetscFunctionBegin; 170995fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 171095fce210SBarry Smith PetscSFCheckGraphSet(sf, 1); 171195fce210SBarry Smith PetscValidPointer(degree, 2); 1712803bd9e8SMatthew G. Knepley if (!sf->degreeknown) { 17135b0d146aSStefano Zampini PetscInt i, nroots = sf->nroots, maxlocal; 171428b400f6SJacob Faibussowitsch PetscCheck(!sf->degree, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Calls to PetscSFComputeDegreeBegin() cannot be nested."); 17155b0d146aSStefano Zampini maxlocal = sf->maxleaf - sf->minleaf + 1; 17169566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nroots, &sf->degree)); 17179566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(PetscMax(maxlocal, 1), &sf->degreetmp)); /* allocate at least one entry, see check in PetscSFComputeDegreeEnd() */ 171829046d53SLisandro Dalcin for (i = 0; i < nroots; i++) sf->degree[i] = 0; 17199837ea96SMatthew G. Knepley for (i = 0; i < maxlocal; i++) sf->degreetmp[i] = 1; 17209566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sf, MPIU_INT, sf->degreetmp - sf->minleaf, sf->degree, MPI_SUM)); 172195fce210SBarry Smith } 172295fce210SBarry Smith *degree = NULL; 172395fce210SBarry Smith PetscFunctionReturn(0); 172495fce210SBarry Smith } 172595fce210SBarry Smith 172695fce210SBarry Smith /*@C 1727cab54364SBarry Smith PetscSFComputeDegreeEnd - complete computation of degree for each root vertex, started with `PetscSFComputeDegreeBegin()` 172895fce210SBarry Smith 172995fce210SBarry Smith Collective 173095fce210SBarry Smith 17314165533cSJose E. Roman Input Parameter: 173295fce210SBarry Smith . sf - star forest 173395fce210SBarry Smith 17344165533cSJose E. Roman Output Parameter: 173595fce210SBarry Smith . degree - degree of each root vertex 173695fce210SBarry Smith 173795fce210SBarry Smith Level: developer 173895fce210SBarry Smith 1739cab54364SBarry Smith Note: 1740cab54364SBarry Smith The returned array is owned by `PetscSF` and automatically freed by `PetscSFDestroy()`. Hence no need to call `PetscFree()` on it. 1741ffe67aa5SVáclav Hapla 1742cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFGatherBegin()`, `PetscSFComputeDegreeBegin()` 174395fce210SBarry Smith @*/ 1744d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFComputeDegreeEnd(PetscSF sf, const PetscInt **degree) 1745d71ae5a4SJacob Faibussowitsch { 174695fce210SBarry Smith PetscFunctionBegin; 174795fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 174895fce210SBarry Smith PetscSFCheckGraphSet(sf, 1); 174929046d53SLisandro Dalcin PetscValidPointer(degree, 2); 175095fce210SBarry Smith if (!sf->degreeknown) { 175128b400f6SJacob Faibussowitsch PetscCheck(sf->degreetmp, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Must call PetscSFComputeDegreeBegin() before PetscSFComputeDegreeEnd()"); 17529566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf, MPIU_INT, sf->degreetmp - sf->minleaf, sf->degree, MPI_SUM)); 17539566063dSJacob Faibussowitsch PetscCall(PetscFree(sf->degreetmp)); 175495fce210SBarry Smith sf->degreeknown = PETSC_TRUE; 175595fce210SBarry Smith } 175695fce210SBarry Smith *degree = sf->degree; 175795fce210SBarry Smith PetscFunctionReturn(0); 175895fce210SBarry Smith } 175995fce210SBarry Smith 1760673100f5SVaclav Hapla /*@C 1761cab54364SBarry Smith PetscSFComputeMultiRootOriginalNumbering - Returns original numbering of multi-roots (roots of multi-SF returned by `PetscSFGetMultiSF()`). 176266dfcd1aSVaclav Hapla Each multi-root is assigned index of the corresponding original root. 1763673100f5SVaclav Hapla 1764673100f5SVaclav Hapla Collective 1765673100f5SVaclav Hapla 17664165533cSJose E. Roman Input Parameters: 1767673100f5SVaclav Hapla + sf - star forest 1768cab54364SBarry Smith - degree - degree of each root vertex, computed with `PetscSFComputeDegreeBegin()`/`PetscSFComputeDegreeEnd()` 1769673100f5SVaclav Hapla 17704165533cSJose E. Roman Output Parameters: 177166dfcd1aSVaclav Hapla + nMultiRoots - (optional) number of multi-roots (roots of multi-SF) 177266dfcd1aSVaclav Hapla - multiRootsOrigNumbering - original indices of multi-roots; length of this array is nMultiRoots 1773673100f5SVaclav Hapla 1774673100f5SVaclav Hapla Level: developer 1775673100f5SVaclav Hapla 1776cab54364SBarry Smith Note: 1777cab54364SBarry Smith The returned array multiRootsOrigNumbering is newly allocated and should be destroyed with `PetscFree()` when no longer needed. 1778ffe67aa5SVáclav Hapla 1779cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFComputeDegreeBegin()`, `PetscSFComputeDegreeEnd()`, `PetscSFGetMultiSF()` 1780673100f5SVaclav Hapla @*/ 1781d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFComputeMultiRootOriginalNumbering(PetscSF sf, const PetscInt degree[], PetscInt *nMultiRoots, PetscInt *multiRootsOrigNumbering[]) 1782d71ae5a4SJacob Faibussowitsch { 1783673100f5SVaclav Hapla PetscSF msf; 1784673100f5SVaclav Hapla PetscInt i, j, k, nroots, nmroots; 1785673100f5SVaclav Hapla 1786673100f5SVaclav Hapla PetscFunctionBegin; 1787673100f5SVaclav Hapla PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 17889566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sf, &nroots, NULL, NULL, NULL)); 178929328920SVaclav Hapla if (nroots) PetscValidIntPointer(degree, 2); 179066dfcd1aSVaclav Hapla if (nMultiRoots) PetscValidIntPointer(nMultiRoots, 3); 179166dfcd1aSVaclav Hapla PetscValidPointer(multiRootsOrigNumbering, 4); 17929566063dSJacob Faibussowitsch PetscCall(PetscSFGetMultiSF(sf, &msf)); 17939566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(msf, &nmroots, NULL, NULL, NULL)); 17949566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nmroots, multiRootsOrigNumbering)); 1795673100f5SVaclav Hapla for (i = 0, j = 0, k = 0; i < nroots; i++) { 1796673100f5SVaclav Hapla if (!degree[i]) continue; 1797ad540459SPierre Jolivet for (j = 0; j < degree[i]; j++, k++) (*multiRootsOrigNumbering)[k] = i; 1798673100f5SVaclav Hapla } 179908401ef6SPierre Jolivet PetscCheck(k == nmroots, PETSC_COMM_SELF, PETSC_ERR_PLIB, "sanity check fail"); 180066dfcd1aSVaclav Hapla if (nMultiRoots) *nMultiRoots = nmroots; 1801673100f5SVaclav Hapla PetscFunctionReturn(0); 1802673100f5SVaclav Hapla } 1803673100f5SVaclav Hapla 180495fce210SBarry Smith /*@C 1805cab54364SBarry Smith PetscSFGatherBegin - begin pointwise gather of all leaves into multi-roots, to be completed with `PetscSFGatherEnd()` 180695fce210SBarry Smith 180795fce210SBarry Smith Collective 180895fce210SBarry Smith 18094165533cSJose E. Roman Input Parameters: 181095fce210SBarry Smith + sf - star forest 181195fce210SBarry Smith . unit - data type 181295fce210SBarry Smith - leafdata - leaf data to gather to roots 181395fce210SBarry Smith 18144165533cSJose E. Roman Output Parameter: 181595fce210SBarry Smith . multirootdata - root buffer to gather into, amount of space per root is equal to its degree 181695fce210SBarry Smith 181795fce210SBarry Smith Level: intermediate 181895fce210SBarry Smith 1819cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFComputeDegreeBegin()`, `PetscSFScatterBegin()` 182095fce210SBarry Smith @*/ 1821d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFGatherBegin(PetscSF sf, MPI_Datatype unit, const void *leafdata, void *multirootdata) 1822d71ae5a4SJacob Faibussowitsch { 1823a5526d50SJunchao Zhang PetscSF multi = NULL; 182495fce210SBarry Smith 182595fce210SBarry Smith PetscFunctionBegin; 182695fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 18279566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 18289566063dSJacob Faibussowitsch PetscCall(PetscSFGetMultiSF(sf, &multi)); 18299566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(multi, unit, leafdata, multirootdata, MPI_REPLACE)); 183095fce210SBarry Smith PetscFunctionReturn(0); 183195fce210SBarry Smith } 183295fce210SBarry Smith 183395fce210SBarry Smith /*@C 1834cab54364SBarry Smith PetscSFGatherEnd - ends pointwise gather operation that was started with `PetscSFGatherBegin()` 183595fce210SBarry Smith 183695fce210SBarry Smith Collective 183795fce210SBarry Smith 18384165533cSJose E. Roman Input Parameters: 183995fce210SBarry Smith + sf - star forest 184095fce210SBarry Smith . unit - data type 184195fce210SBarry Smith - leafdata - leaf data to gather to roots 184295fce210SBarry Smith 18434165533cSJose E. Roman Output Parameter: 184495fce210SBarry Smith . multirootdata - root buffer to gather into, amount of space per root is equal to its degree 184595fce210SBarry Smith 184695fce210SBarry Smith Level: intermediate 184795fce210SBarry Smith 1848cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFComputeDegreeEnd()`, `PetscSFScatterEnd()` 184995fce210SBarry Smith @*/ 1850d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFGatherEnd(PetscSF sf, MPI_Datatype unit, const void *leafdata, void *multirootdata) 1851d71ae5a4SJacob Faibussowitsch { 1852a5526d50SJunchao Zhang PetscSF multi = NULL; 185395fce210SBarry Smith 185495fce210SBarry Smith PetscFunctionBegin; 185595fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 18569566063dSJacob Faibussowitsch PetscCall(PetscSFGetMultiSF(sf, &multi)); 18579566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(multi, unit, leafdata, multirootdata, MPI_REPLACE)); 185895fce210SBarry Smith PetscFunctionReturn(0); 185995fce210SBarry Smith } 186095fce210SBarry Smith 186195fce210SBarry Smith /*@C 1862cab54364SBarry Smith PetscSFScatterBegin - begin pointwise scatter operation from multi-roots to leaves, to be completed with `PetscSFScatterEnd()` 186395fce210SBarry Smith 186495fce210SBarry Smith Collective 186595fce210SBarry Smith 18664165533cSJose E. Roman Input Parameters: 186795fce210SBarry Smith + sf - star forest 186895fce210SBarry Smith . unit - data type 186995fce210SBarry Smith - multirootdata - root buffer to send to each leaf, one unit of data per leaf 187095fce210SBarry Smith 18714165533cSJose E. Roman Output Parameter: 187295fce210SBarry Smith . leafdata - leaf data to be update with personal data from each respective root 187395fce210SBarry Smith 187495fce210SBarry Smith Level: intermediate 187595fce210SBarry Smith 1876cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFComputeDegreeBegin()`, `PetscSFScatterBegin()` 187795fce210SBarry Smith @*/ 1878d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFScatterBegin(PetscSF sf, MPI_Datatype unit, const void *multirootdata, void *leafdata) 1879d71ae5a4SJacob Faibussowitsch { 1880a5526d50SJunchao Zhang PetscSF multi = NULL; 188195fce210SBarry Smith 188295fce210SBarry Smith PetscFunctionBegin; 188395fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 18849566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 18859566063dSJacob Faibussowitsch PetscCall(PetscSFGetMultiSF(sf, &multi)); 18869566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(multi, unit, multirootdata, leafdata, MPI_REPLACE)); 188795fce210SBarry Smith PetscFunctionReturn(0); 188895fce210SBarry Smith } 188995fce210SBarry Smith 189095fce210SBarry Smith /*@C 1891cab54364SBarry Smith PetscSFScatterEnd - ends pointwise scatter operation that was started with `PetscSFScatterBegin()` 189295fce210SBarry Smith 189395fce210SBarry Smith Collective 189495fce210SBarry Smith 18954165533cSJose E. Roman Input Parameters: 189695fce210SBarry Smith + sf - star forest 189795fce210SBarry Smith . unit - data type 189895fce210SBarry Smith - multirootdata - root buffer to send to each leaf, one unit of data per leaf 189995fce210SBarry Smith 19004165533cSJose E. Roman Output Parameter: 190195fce210SBarry Smith . leafdata - leaf data to be update with personal data from each respective root 190295fce210SBarry Smith 190395fce210SBarry Smith Level: intermediate 190495fce210SBarry Smith 1905cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFComputeDegreeEnd()`, `PetscSFScatterEnd()` 190695fce210SBarry Smith @*/ 1907d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFScatterEnd(PetscSF sf, MPI_Datatype unit, const void *multirootdata, void *leafdata) 1908d71ae5a4SJacob Faibussowitsch { 1909a5526d50SJunchao Zhang PetscSF multi = NULL; 191095fce210SBarry Smith 191195fce210SBarry Smith PetscFunctionBegin; 191295fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 19139566063dSJacob Faibussowitsch PetscCall(PetscSFGetMultiSF(sf, &multi)); 19149566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(multi, unit, multirootdata, leafdata, MPI_REPLACE)); 191595fce210SBarry Smith PetscFunctionReturn(0); 191695fce210SBarry Smith } 1917a7b3aa13SAta Mesgarnejad 1918d71ae5a4SJacob Faibussowitsch static PetscErrorCode PetscSFCheckLeavesUnique_Private(PetscSF sf) 1919d71ae5a4SJacob Faibussowitsch { 1920a072220fSLawrence Mitchell PetscInt i, n, nleaves; 1921a072220fSLawrence Mitchell const PetscInt *ilocal = NULL; 1922a072220fSLawrence Mitchell PetscHSetI seen; 1923a072220fSLawrence Mitchell 1924a072220fSLawrence Mitchell PetscFunctionBegin; 1925b458e8f1SJose E. Roman if (PetscDefined(USE_DEBUG)) { 19269566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sf, NULL, &nleaves, &ilocal, NULL)); 19279566063dSJacob Faibussowitsch PetscCall(PetscHSetICreate(&seen)); 1928a072220fSLawrence Mitchell for (i = 0; i < nleaves; i++) { 1929a072220fSLawrence Mitchell const PetscInt leaf = ilocal ? ilocal[i] : i; 19309566063dSJacob Faibussowitsch PetscCall(PetscHSetIAdd(seen, leaf)); 1931a072220fSLawrence Mitchell } 19329566063dSJacob Faibussowitsch PetscCall(PetscHSetIGetSize(seen, &n)); 193308401ef6SPierre Jolivet PetscCheck(n == nleaves, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Provided leaves have repeated values: all leaves must be unique"); 19349566063dSJacob Faibussowitsch PetscCall(PetscHSetIDestroy(&seen)); 1935b458e8f1SJose E. Roman } 1936a072220fSLawrence Mitchell PetscFunctionReturn(0); 1937a072220fSLawrence Mitchell } 193854729392SStefano Zampini 1939a7b3aa13SAta Mesgarnejad /*@ 1940cab54364SBarry Smith PetscSFCompose - Compose a new `PetscSF` by putting the second `PetscSF` under the first one in a top (roots) down (leaves) view 1941a7b3aa13SAta Mesgarnejad 1942a7b3aa13SAta Mesgarnejad Input Parameters: 1943cab54364SBarry Smith + sfA - The first `PetscSF` 1944cab54364SBarry Smith - sfB - The second `PetscSF` 1945a7b3aa13SAta Mesgarnejad 1946a7b3aa13SAta Mesgarnejad Output Parameters: 1947cab54364SBarry Smith . sfBA - The composite `PetscSF` 1948a7b3aa13SAta Mesgarnejad 1949a7b3aa13SAta Mesgarnejad Level: developer 1950a7b3aa13SAta Mesgarnejad 1951a072220fSLawrence Mitchell Notes: 1952cab54364SBarry Smith Currently, the two `PetscSF`s must be defined on congruent communicators and they must be true star 195354729392SStefano Zampini forests, i.e. the same leaf is not connected with different roots. 195454729392SStefano Zampini 195554729392SStefano Zampini sfA's leaf space and sfB's root space might be partially overlapped. The composition builds 195654729392SStefano Zampini a graph with sfA's roots and sfB's leaves only when there is a path between them. Unconnected 195754729392SStefano Zampini nodes (roots or leaves) are not in sfBA. Doing a Bcast on the new SF is equivalent to doing a 195854729392SStefano Zampini Bcast on sfA, then a Bcast on sfB, on connected nodes. 1959a072220fSLawrence Mitchell 1960db781477SPatrick Sanan .seealso: `PetscSF`, `PetscSFComposeInverse()`, `PetscSFGetGraph()`, `PetscSFSetGraph()` 1961a7b3aa13SAta Mesgarnejad @*/ 1962d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFCompose(PetscSF sfA, PetscSF sfB, PetscSF *sfBA) 1963d71ae5a4SJacob Faibussowitsch { 1964a7b3aa13SAta Mesgarnejad const PetscSFNode *remotePointsA, *remotePointsB; 1965d41018fbSJunchao Zhang PetscSFNode *remotePointsBA = NULL, *reorderedRemotePointsA = NULL, *leafdataB; 196654729392SStefano Zampini const PetscInt *localPointsA, *localPointsB; 196754729392SStefano Zampini PetscInt *localPointsBA; 196854729392SStefano Zampini PetscInt i, numRootsA, numLeavesA, numRootsB, numLeavesB, minleaf, maxleaf, numLeavesBA; 196954729392SStefano Zampini PetscBool denseB; 1970a7b3aa13SAta Mesgarnejad 1971a7b3aa13SAta Mesgarnejad PetscFunctionBegin; 1972a7b3aa13SAta Mesgarnejad PetscValidHeaderSpecific(sfA, PETSCSF_CLASSID, 1); 197329046d53SLisandro Dalcin PetscSFCheckGraphSet(sfA, 1); 197429046d53SLisandro Dalcin PetscValidHeaderSpecific(sfB, PETSCSF_CLASSID, 2); 197529046d53SLisandro Dalcin PetscSFCheckGraphSet(sfB, 2); 197654729392SStefano Zampini PetscCheckSameComm(sfA, 1, sfB, 2); 197729046d53SLisandro Dalcin PetscValidPointer(sfBA, 3); 19789566063dSJacob Faibussowitsch PetscCall(PetscSFCheckLeavesUnique_Private(sfA)); 19799566063dSJacob Faibussowitsch PetscCall(PetscSFCheckLeavesUnique_Private(sfB)); 198054729392SStefano Zampini 19819566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfA, &numRootsA, &numLeavesA, &localPointsA, &remotePointsA)); 19829566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfB, &numRootsB, &numLeavesB, &localPointsB, &remotePointsB)); 19830ea77edaSksagiyam /* Make sure that PetscSFBcast{Begin, End}(sfB, ...) works with root data of size */ 19840ea77edaSksagiyam /* numRootsB; otherwise, garbage will be broadcasted. */ 19850ea77edaSksagiyam /* Example (comm size = 1): */ 19860ea77edaSksagiyam /* sfA: 0 <- (0, 0) */ 19870ea77edaSksagiyam /* sfB: 100 <- (0, 0) */ 19880ea77edaSksagiyam /* 101 <- (0, 1) */ 19890ea77edaSksagiyam /* Here, we have remotePointsA = [(0, 0)], but for remotePointsA to be a valid tartget */ 19900ea77edaSksagiyam /* of sfB, it has to be recasted as [(0, 0), (-1, -1)] so that points 100 and 101 would */ 19910ea77edaSksagiyam /* receive (0, 0) and (-1, -1), respectively, when PetscSFBcast(sfB, ...) is called on */ 19920ea77edaSksagiyam /* remotePointsA; if not recasted, point 101 would receive a garbage value. */ 19939566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numRootsB, &reorderedRemotePointsA)); 199454729392SStefano Zampini for (i = 0; i < numRootsB; i++) { 199554729392SStefano Zampini reorderedRemotePointsA[i].rank = -1; 199654729392SStefano Zampini reorderedRemotePointsA[i].index = -1; 199754729392SStefano Zampini } 199854729392SStefano Zampini for (i = 0; i < numLeavesA; i++) { 19990ea77edaSksagiyam PetscInt localp = localPointsA ? localPointsA[i] : i; 20000ea77edaSksagiyam 20010ea77edaSksagiyam if (localp >= numRootsB) continue; 20020ea77edaSksagiyam reorderedRemotePointsA[localp] = remotePointsA[i]; 200354729392SStefano Zampini } 2004d41018fbSJunchao Zhang remotePointsA = reorderedRemotePointsA; 20059566063dSJacob Faibussowitsch PetscCall(PetscSFGetLeafRange(sfB, &minleaf, &maxleaf)); 20069566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(maxleaf - minleaf + 1, &leafdataB)); 20070ea77edaSksagiyam for (i = 0; i < maxleaf - minleaf + 1; i++) { 20080ea77edaSksagiyam leafdataB[i].rank = -1; 20090ea77edaSksagiyam leafdataB[i].index = -1; 20100ea77edaSksagiyam } 20119566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sfB, MPIU_2INT, remotePointsA, leafdataB - minleaf, MPI_REPLACE)); 20129566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sfB, MPIU_2INT, remotePointsA, leafdataB - minleaf, MPI_REPLACE)); 20139566063dSJacob Faibussowitsch PetscCall(PetscFree(reorderedRemotePointsA)); 2014d41018fbSJunchao Zhang 201554729392SStefano Zampini denseB = (PetscBool)!localPointsB; 201654729392SStefano Zampini for (i = 0, numLeavesBA = 0; i < numLeavesB; i++) { 201754729392SStefano Zampini if (leafdataB[localPointsB ? localPointsB[i] - minleaf : i].rank == -1) denseB = PETSC_FALSE; 201854729392SStefano Zampini else numLeavesBA++; 201954729392SStefano Zampini } 202054729392SStefano Zampini if (denseB) { 2021d41018fbSJunchao Zhang localPointsBA = NULL; 2022d41018fbSJunchao Zhang remotePointsBA = leafdataB; 2023d41018fbSJunchao Zhang } else { 20249566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numLeavesBA, &localPointsBA)); 20259566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numLeavesBA, &remotePointsBA)); 202654729392SStefano Zampini for (i = 0, numLeavesBA = 0; i < numLeavesB; i++) { 202754729392SStefano Zampini const PetscInt l = localPointsB ? localPointsB[i] : i; 202854729392SStefano Zampini 202954729392SStefano Zampini if (leafdataB[l - minleaf].rank == -1) continue; 203054729392SStefano Zampini remotePointsBA[numLeavesBA] = leafdataB[l - minleaf]; 203154729392SStefano Zampini localPointsBA[numLeavesBA] = l; 203254729392SStefano Zampini numLeavesBA++; 203354729392SStefano Zampini } 20349566063dSJacob Faibussowitsch PetscCall(PetscFree(leafdataB)); 2035d41018fbSJunchao Zhang } 20369566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)sfA), sfBA)); 20379566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(*sfBA)); 20389566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(*sfBA, numRootsA, numLeavesBA, localPointsBA, PETSC_OWN_POINTER, remotePointsBA, PETSC_OWN_POINTER)); 2039a7b3aa13SAta Mesgarnejad PetscFunctionReturn(0); 2040a7b3aa13SAta Mesgarnejad } 20411c6ba672SJunchao Zhang 204204c0ada0SJunchao Zhang /*@ 2043cab54364SBarry Smith PetscSFComposeInverse - Compose a new `PetscSF` by putting the inverse of the second `PetscSF` under the first one 204404c0ada0SJunchao Zhang 204504c0ada0SJunchao Zhang Input Parameters: 2046cab54364SBarry Smith + sfA - The first `PetscSF` 2047cab54364SBarry Smith - sfB - The second `PetscSF` 204804c0ada0SJunchao Zhang 204904c0ada0SJunchao Zhang Output Parameters: 2050cab54364SBarry Smith . sfBA - The composite `PetscSF`. 205104c0ada0SJunchao Zhang 205204c0ada0SJunchao Zhang Level: developer 205304c0ada0SJunchao Zhang 205454729392SStefano Zampini Notes: 205554729392SStefano Zampini Currently, the two SFs must be defined on congruent communicators and they must be true star 205654729392SStefano Zampini forests, i.e. the same leaf is not connected with different roots. Even more, all roots of the 205754729392SStefano Zampini second SF must have a degree of 1, i.e., no roots have more than one leaf connected. 205854729392SStefano Zampini 205954729392SStefano Zampini sfA's leaf space and sfB's leaf space might be partially overlapped. The composition builds 206054729392SStefano Zampini a graph with sfA's roots and sfB's roots only when there is a path between them. Unconnected 206154729392SStefano Zampini roots are not in sfBA. Doing a Bcast on the new SF is equivalent to doing a Bcast on sfA, then 206254729392SStefano Zampini a Reduce on sfB, on connected roots. 206354729392SStefano Zampini 2064db781477SPatrick Sanan .seealso: `PetscSF`, `PetscSFCompose()`, `PetscSFGetGraph()`, `PetscSFSetGraph()`, `PetscSFCreateInverseSF()` 206504c0ada0SJunchao Zhang @*/ 2066d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFComposeInverse(PetscSF sfA, PetscSF sfB, PetscSF *sfBA) 2067d71ae5a4SJacob Faibussowitsch { 206804c0ada0SJunchao Zhang const PetscSFNode *remotePointsA, *remotePointsB; 206904c0ada0SJunchao Zhang PetscSFNode *remotePointsBA; 207004c0ada0SJunchao Zhang const PetscInt *localPointsA, *localPointsB; 207154729392SStefano Zampini PetscSFNode *reorderedRemotePointsA = NULL; 207254729392SStefano Zampini PetscInt i, numRootsA, numLeavesA, numLeavesBA, numRootsB, numLeavesB, minleaf, maxleaf, *localPointsBA; 20735b0d146aSStefano Zampini MPI_Op op; 20745b0d146aSStefano Zampini #if defined(PETSC_USE_64BIT_INDICES) 20755b0d146aSStefano Zampini PetscBool iswin; 20765b0d146aSStefano Zampini #endif 207704c0ada0SJunchao Zhang 207804c0ada0SJunchao Zhang PetscFunctionBegin; 207904c0ada0SJunchao Zhang PetscValidHeaderSpecific(sfA, PETSCSF_CLASSID, 1); 208004c0ada0SJunchao Zhang PetscSFCheckGraphSet(sfA, 1); 208104c0ada0SJunchao Zhang PetscValidHeaderSpecific(sfB, PETSCSF_CLASSID, 2); 208204c0ada0SJunchao Zhang PetscSFCheckGraphSet(sfB, 2); 208354729392SStefano Zampini PetscCheckSameComm(sfA, 1, sfB, 2); 208404c0ada0SJunchao Zhang PetscValidPointer(sfBA, 3); 20859566063dSJacob Faibussowitsch PetscCall(PetscSFCheckLeavesUnique_Private(sfA)); 20869566063dSJacob Faibussowitsch PetscCall(PetscSFCheckLeavesUnique_Private(sfB)); 208754729392SStefano Zampini 20889566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfA, &numRootsA, &numLeavesA, &localPointsA, &remotePointsA)); 20899566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfB, &numRootsB, &numLeavesB, &localPointsB, &remotePointsB)); 20905b0d146aSStefano Zampini 20915b0d146aSStefano Zampini /* TODO: Check roots of sfB have degree of 1 */ 20925b0d146aSStefano Zampini /* Once we implement it, we can replace the MPI_MAXLOC 209383df288dSJunchao Zhang with MPI_REPLACE. In that case, MPI_MAXLOC and MPI_REPLACE have the same effect. 20945b0d146aSStefano Zampini We use MPI_MAXLOC only to have a deterministic output from this routine if 20955b0d146aSStefano Zampini the root condition is not meet. 20965b0d146aSStefano Zampini */ 20975b0d146aSStefano Zampini op = MPI_MAXLOC; 20985b0d146aSStefano Zampini #if defined(PETSC_USE_64BIT_INDICES) 20995b0d146aSStefano Zampini /* we accept a non-deterministic output (if any) with PETSCSFWINDOW, since MPI_MAXLOC cannot operate on MPIU_2INT with MPI_Accumulate */ 21009566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)sfB, PETSCSFWINDOW, &iswin)); 210183df288dSJunchao Zhang if (iswin) op = MPI_REPLACE; 21025b0d146aSStefano Zampini #endif 21035b0d146aSStefano Zampini 21049566063dSJacob Faibussowitsch PetscCall(PetscSFGetLeafRange(sfB, &minleaf, &maxleaf)); 21059566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(maxleaf - minleaf + 1, &reorderedRemotePointsA)); 210654729392SStefano Zampini for (i = 0; i < maxleaf - minleaf + 1; i++) { 210754729392SStefano Zampini reorderedRemotePointsA[i].rank = -1; 210854729392SStefano Zampini reorderedRemotePointsA[i].index = -1; 210954729392SStefano Zampini } 211054729392SStefano Zampini if (localPointsA) { 211154729392SStefano Zampini for (i = 0; i < numLeavesA; i++) { 211254729392SStefano Zampini if (localPointsA[i] > maxleaf || localPointsA[i] < minleaf) continue; 211354729392SStefano Zampini reorderedRemotePointsA[localPointsA[i] - minleaf] = remotePointsA[i]; 211454729392SStefano Zampini } 211554729392SStefano Zampini } else { 211654729392SStefano Zampini for (i = 0; i < numLeavesA; i++) { 211754729392SStefano Zampini if (i > maxleaf || i < minleaf) continue; 211854729392SStefano Zampini reorderedRemotePointsA[i - minleaf] = remotePointsA[i]; 211954729392SStefano Zampini } 212054729392SStefano Zampini } 212154729392SStefano Zampini 21229566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numRootsB, &localPointsBA)); 21239566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numRootsB, &remotePointsBA)); 212454729392SStefano Zampini for (i = 0; i < numRootsB; i++) { 212554729392SStefano Zampini remotePointsBA[i].rank = -1; 212654729392SStefano Zampini remotePointsBA[i].index = -1; 212754729392SStefano Zampini } 212854729392SStefano Zampini 21299566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sfB, MPIU_2INT, reorderedRemotePointsA - minleaf, remotePointsBA, op)); 21309566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sfB, MPIU_2INT, reorderedRemotePointsA - minleaf, remotePointsBA, op)); 21319566063dSJacob Faibussowitsch PetscCall(PetscFree(reorderedRemotePointsA)); 213254729392SStefano Zampini for (i = 0, numLeavesBA = 0; i < numRootsB; i++) { 213354729392SStefano Zampini if (remotePointsBA[i].rank == -1) continue; 213454729392SStefano Zampini remotePointsBA[numLeavesBA].rank = remotePointsBA[i].rank; 213554729392SStefano Zampini remotePointsBA[numLeavesBA].index = remotePointsBA[i].index; 213654729392SStefano Zampini localPointsBA[numLeavesBA] = i; 213754729392SStefano Zampini numLeavesBA++; 213854729392SStefano Zampini } 21399566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)sfA), sfBA)); 21409566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(*sfBA)); 21419566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(*sfBA, numRootsA, numLeavesBA, localPointsBA, PETSC_OWN_POINTER, remotePointsBA, PETSC_OWN_POINTER)); 214204c0ada0SJunchao Zhang PetscFunctionReturn(0); 214304c0ada0SJunchao Zhang } 214404c0ada0SJunchao Zhang 21451c6ba672SJunchao Zhang /* 2146cab54364SBarry Smith PetscSFCreateLocalSF_Private - Creates a local `PetscSF` that only has intra-process edges of the global `PetscSF` 21471c6ba672SJunchao Zhang 21481c6ba672SJunchao Zhang Input Parameters: 2149cab54364SBarry Smith . sf - The global `PetscSF` 21501c6ba672SJunchao Zhang 21511c6ba672SJunchao Zhang Output Parameters: 2152cab54364SBarry Smith . out - The local `PetscSF` 2153cab54364SBarry Smith 2154cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFCreate()` 21551c6ba672SJunchao Zhang */ 2156d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFCreateLocalSF_Private(PetscSF sf, PetscSF *out) 2157d71ae5a4SJacob Faibussowitsch { 21581c6ba672SJunchao Zhang MPI_Comm comm; 21591c6ba672SJunchao Zhang PetscMPIInt myrank; 21601c6ba672SJunchao Zhang const PetscInt *ilocal; 21611c6ba672SJunchao Zhang const PetscSFNode *iremote; 21621c6ba672SJunchao Zhang PetscInt i, j, nroots, nleaves, lnleaves, *lilocal; 21631c6ba672SJunchao Zhang PetscSFNode *liremote; 21641c6ba672SJunchao Zhang PetscSF lsf; 21651c6ba672SJunchao Zhang 21661c6ba672SJunchao Zhang PetscFunctionBegin; 21671c6ba672SJunchao Zhang PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 2168dbbe0bcdSBarry Smith if (sf->ops->CreateLocalSF) PetscUseTypeMethod(sf, CreateLocalSF, out); 2169dbbe0bcdSBarry Smith else { 21701c6ba672SJunchao Zhang /* Could use PetscSFCreateEmbeddedLeafSF, but since we know the comm is PETSC_COMM_SELF, we can make it fast */ 21719566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)sf, &comm)); 21729566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &myrank)); 21731c6ba672SJunchao Zhang 21741c6ba672SJunchao Zhang /* Find out local edges and build a local SF */ 21759566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sf, &nroots, &nleaves, &ilocal, &iremote)); 21769371c9d4SSatish Balay for (i = lnleaves = 0; i < nleaves; i++) { 21779371c9d4SSatish Balay if (iremote[i].rank == (PetscInt)myrank) lnleaves++; 21789371c9d4SSatish Balay } 21799566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(lnleaves, &lilocal)); 21809566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(lnleaves, &liremote)); 21811c6ba672SJunchao Zhang 21821c6ba672SJunchao Zhang for (i = j = 0; i < nleaves; i++) { 21831c6ba672SJunchao Zhang if (iremote[i].rank == (PetscInt)myrank) { 21841c6ba672SJunchao Zhang lilocal[j] = ilocal ? ilocal[i] : i; /* ilocal=NULL for contiguous storage */ 21851c6ba672SJunchao Zhang liremote[j].rank = 0; /* rank in PETSC_COMM_SELF */ 21861c6ba672SJunchao Zhang liremote[j].index = iremote[i].index; 21871c6ba672SJunchao Zhang j++; 21881c6ba672SJunchao Zhang } 21891c6ba672SJunchao Zhang } 21909566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PETSC_COMM_SELF, &lsf)); 21919566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(lsf)); 21929566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(lsf, nroots, lnleaves, lilocal, PETSC_OWN_POINTER, liremote, PETSC_OWN_POINTER)); 21939566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(lsf)); 21941c6ba672SJunchao Zhang *out = lsf; 21951c6ba672SJunchao Zhang } 21961c6ba672SJunchao Zhang PetscFunctionReturn(0); 21971c6ba672SJunchao Zhang } 2198dd5b3ca6SJunchao Zhang 2199dd5b3ca6SJunchao Zhang /* Similar to PetscSFBcast, but only Bcast to leaves on rank 0 */ 2200d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFBcastToZero_Private(PetscSF sf, MPI_Datatype unit, const void *rootdata, void *leafdata) 2201d71ae5a4SJacob Faibussowitsch { 2202eb02082bSJunchao Zhang PetscMemType rootmtype, leafmtype; 2203dd5b3ca6SJunchao Zhang 2204dd5b3ca6SJunchao Zhang PetscFunctionBegin; 2205dd5b3ca6SJunchao Zhang PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 22069566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 22079566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(PETSCSF_BcastBegin, sf, 0, 0, 0)); 22089566063dSJacob Faibussowitsch PetscCall(PetscGetMemType(rootdata, &rootmtype)); 22099566063dSJacob Faibussowitsch PetscCall(PetscGetMemType(leafdata, &leafmtype)); 2210dbbe0bcdSBarry Smith PetscUseTypeMethod(sf, BcastToZero, unit, rootmtype, rootdata, leafmtype, leafdata); 22119566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(PETSCSF_BcastBegin, sf, 0, 0, 0)); 2212dd5b3ca6SJunchao Zhang PetscFunctionReturn(0); 2213dd5b3ca6SJunchao Zhang } 2214dd5b3ca6SJunchao Zhang 2215157edd7aSVaclav Hapla /*@ 2216cab54364SBarry Smith PetscSFConcatenate - concatenate multiple `PetscSF` into one 2217157edd7aSVaclav Hapla 2218157edd7aSVaclav Hapla Input Parameters: 2219157edd7aSVaclav Hapla + comm - the communicator 2220cab54364SBarry Smith . nsfs - the number of input `PetscSF` 2221cab54364SBarry Smith . sfs - the array of input `PetscSF` 2222cab54364SBarry Smith . shareRoots - the flag whether roots of input `PetscSF` are taken as shared (`PETSC_TRUE`), or separate and concatenated (`PETSC_FALSE`) 2223cab54364SBarry Smith - leafOffsets - the array of local leaf offsets, one for each input `PetscSF`, or NULL for contiguous storage 2224157edd7aSVaclav Hapla 2225157edd7aSVaclav Hapla Output Parameters: 2226cab54364SBarry Smith . newsf - The resulting `PetscSF` 2227157edd7aSVaclav Hapla 2228157edd7aSVaclav Hapla Level: developer 2229157edd7aSVaclav Hapla 2230157edd7aSVaclav Hapla Notes: 2231157edd7aSVaclav Hapla The communicator of all SFs in sfs must be comm. 2232157edd7aSVaclav Hapla 2233157edd7aSVaclav Hapla The offsets in leafOffsets are added to the original leaf indices. 2234157edd7aSVaclav Hapla 2235157edd7aSVaclav Hapla If all input SFs use contiguous leaf storage (ilocal = NULL), leafOffsets can be passed as NULL as well. 2236157edd7aSVaclav Hapla In this case, NULL is also passed as ilocal to the resulting SF. 2237157edd7aSVaclav Hapla 2238157edd7aSVaclav Hapla If any input SF has non-null ilocal, leafOffsets is needed to distinguish leaves from different input SFs. 2239157edd7aSVaclav Hapla In this case, user is responsible to provide correct offsets so that the resulting leaves are unique (otherwise an error occurs). 2240157edd7aSVaclav Hapla 2241db781477SPatrick Sanan .seealso: `PetscSF`, `PetscSFCompose()`, `PetscSFGetGraph()`, `PetscSFSetGraph()` 2242157edd7aSVaclav Hapla @*/ 2243d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFConcatenate(MPI_Comm comm, PetscInt nsfs, PetscSF sfs[], PetscBool shareRoots, PetscInt leafOffsets[], PetscSF *newsf) 2244d71ae5a4SJacob Faibussowitsch { 2245157edd7aSVaclav Hapla PetscInt i, s, nLeaves, nRoots; 2246157edd7aSVaclav Hapla PetscInt *leafArrayOffsets; 2247157edd7aSVaclav Hapla PetscInt *ilocal_new; 2248157edd7aSVaclav Hapla PetscSFNode *iremote_new; 2249157edd7aSVaclav Hapla PetscInt *rootOffsets; 2250157edd7aSVaclav Hapla PetscBool all_ilocal_null = PETSC_FALSE; 2251157edd7aSVaclav Hapla PetscMPIInt rank; 2252157edd7aSVaclav Hapla 2253157edd7aSVaclav Hapla PetscFunctionBegin; 2254157edd7aSVaclav Hapla { 2255157edd7aSVaclav Hapla PetscSF dummy; /* just to have a PetscObject on comm for input validation */ 2256157edd7aSVaclav Hapla 22579566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &dummy)); 2258157edd7aSVaclav Hapla PetscValidLogicalCollectiveInt(dummy, nsfs, 2); 2259157edd7aSVaclav Hapla PetscValidPointer(sfs, 3); 2260157edd7aSVaclav Hapla for (i = 0; i < nsfs; i++) { 2261157edd7aSVaclav Hapla PetscValidHeaderSpecific(sfs[i], PETSCSF_CLASSID, 3); 2262157edd7aSVaclav Hapla PetscCheckSameComm(dummy, 1, sfs[i], 3); 2263157edd7aSVaclav Hapla } 2264157edd7aSVaclav Hapla PetscValidLogicalCollectiveBool(dummy, shareRoots, 4); 2265157edd7aSVaclav Hapla if (leafOffsets) PetscValidIntPointer(leafOffsets, 5); 2266157edd7aSVaclav Hapla PetscValidPointer(newsf, 6); 22679566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&dummy)); 2268157edd7aSVaclav Hapla } 2269157edd7aSVaclav Hapla if (!nsfs) { 22709566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, newsf)); 22719566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(*newsf, 0, 0, NULL, PETSC_OWN_POINTER, NULL, PETSC_OWN_POINTER)); 2272157edd7aSVaclav Hapla PetscFunctionReturn(0); 2273157edd7aSVaclav Hapla } 22749566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 2275157edd7aSVaclav Hapla 22769566063dSJacob Faibussowitsch PetscCall(PetscCalloc1(nsfs + 1, &rootOffsets)); 2277157edd7aSVaclav Hapla if (shareRoots) { 22789566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfs[0], &nRoots, NULL, NULL, NULL)); 2279157edd7aSVaclav Hapla if (PetscDefined(USE_DEBUG)) { 2280157edd7aSVaclav Hapla for (s = 1; s < nsfs; s++) { 2281157edd7aSVaclav Hapla PetscInt nr; 2282157edd7aSVaclav Hapla 22839566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfs[s], &nr, NULL, NULL, NULL)); 2284157edd7aSVaclav Hapla PetscCheck(nr == nRoots, comm, PETSC_ERR_ARG_SIZ, "shareRoots = PETSC_TRUE but sfs[%" PetscInt_FMT "] has a different number of roots (%" PetscInt_FMT ") than sfs[0] (%" PetscInt_FMT ")", s, nr, nRoots); 2285157edd7aSVaclav Hapla } 2286157edd7aSVaclav Hapla } 2287157edd7aSVaclav Hapla } else { 2288157edd7aSVaclav Hapla for (s = 0; s < nsfs; s++) { 2289157edd7aSVaclav Hapla PetscInt nr; 2290157edd7aSVaclav Hapla 22919566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfs[s], &nr, NULL, NULL, NULL)); 2292157edd7aSVaclav Hapla rootOffsets[s + 1] = rootOffsets[s] + nr; 2293157edd7aSVaclav Hapla } 2294157edd7aSVaclav Hapla nRoots = rootOffsets[nsfs]; 2295157edd7aSVaclav Hapla } 2296157edd7aSVaclav Hapla 2297157edd7aSVaclav Hapla /* Calculate leaf array offsets and automatic root offsets */ 22989566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nsfs + 1, &leafArrayOffsets)); 2299157edd7aSVaclav Hapla leafArrayOffsets[0] = 0; 2300157edd7aSVaclav Hapla for (s = 0; s < nsfs; s++) { 2301157edd7aSVaclav Hapla PetscInt nl; 2302157edd7aSVaclav Hapla 23039566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfs[s], NULL, &nl, NULL, NULL)); 2304157edd7aSVaclav Hapla leafArrayOffsets[s + 1] = leafArrayOffsets[s] + nl; 2305157edd7aSVaclav Hapla } 2306157edd7aSVaclav Hapla nLeaves = leafArrayOffsets[nsfs]; 2307157edd7aSVaclav Hapla 2308157edd7aSVaclav Hapla if (!leafOffsets) { 2309157edd7aSVaclav Hapla all_ilocal_null = PETSC_TRUE; 2310157edd7aSVaclav Hapla for (s = 0; s < nsfs; s++) { 2311157edd7aSVaclav Hapla const PetscInt *ilocal; 2312157edd7aSVaclav Hapla 23139566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfs[s], NULL, NULL, &ilocal, NULL)); 2314157edd7aSVaclav Hapla if (ilocal) { 2315157edd7aSVaclav Hapla all_ilocal_null = PETSC_FALSE; 2316157edd7aSVaclav Hapla break; 2317157edd7aSVaclav Hapla } 2318157edd7aSVaclav Hapla } 2319157edd7aSVaclav Hapla PetscCheck(all_ilocal_null, PETSC_COMM_SELF, PETSC_ERR_ARG_NULL, "leafOffsets can be passed as NULL only if all SFs have ilocal = NULL"); 2320157edd7aSVaclav Hapla } 2321157edd7aSVaclav Hapla 2322157edd7aSVaclav Hapla /* Renumber and concatenate local leaves */ 2323157edd7aSVaclav Hapla ilocal_new = NULL; 2324157edd7aSVaclav Hapla if (!all_ilocal_null) { 23259566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nLeaves, &ilocal_new)); 2326157edd7aSVaclav Hapla for (i = 0; i < nLeaves; i++) ilocal_new[i] = -1; 2327157edd7aSVaclav Hapla for (s = 0; s < nsfs; s++) { 2328157edd7aSVaclav Hapla const PetscInt *ilocal; 2329157edd7aSVaclav Hapla PetscInt *ilocal_l = &ilocal_new[leafArrayOffsets[s]]; 2330157edd7aSVaclav Hapla PetscInt i, nleaves_l; 2331157edd7aSVaclav Hapla 23329566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfs[s], NULL, &nleaves_l, &ilocal, NULL)); 2333157edd7aSVaclav Hapla for (i = 0; i < nleaves_l; i++) ilocal_l[i] = (ilocal ? ilocal[i] : i) + leafOffsets[s]; 2334157edd7aSVaclav Hapla } 2335157edd7aSVaclav Hapla } 2336157edd7aSVaclav Hapla 2337157edd7aSVaclav Hapla /* Renumber and concatenate remote roots */ 23389566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nLeaves, &iremote_new)); 2339157edd7aSVaclav Hapla for (i = 0; i < nLeaves; i++) { 2340157edd7aSVaclav Hapla iremote_new[i].rank = -1; 2341157edd7aSVaclav Hapla iremote_new[i].index = -1; 2342157edd7aSVaclav Hapla } 2343157edd7aSVaclav Hapla for (s = 0; s < nsfs; s++) { 2344157edd7aSVaclav Hapla PetscInt i, nl, nr; 2345157edd7aSVaclav Hapla PetscSF tmp_sf; 2346157edd7aSVaclav Hapla const PetscSFNode *iremote; 2347157edd7aSVaclav Hapla PetscSFNode *tmp_rootdata; 2348157edd7aSVaclav Hapla PetscSFNode *tmp_leafdata = &iremote_new[leafArrayOffsets[s]]; 2349157edd7aSVaclav Hapla 23509566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfs[s], &nr, &nl, NULL, &iremote)); 23519566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &tmp_sf)); 2352157edd7aSVaclav Hapla /* create helper SF with contiguous leaves */ 23539566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(tmp_sf, nr, nl, NULL, PETSC_USE_POINTER, (PetscSFNode *)iremote, PETSC_COPY_VALUES)); 23549566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(tmp_sf)); 23559566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nr, &tmp_rootdata)); 2356157edd7aSVaclav Hapla for (i = 0; i < nr; i++) { 2357157edd7aSVaclav Hapla tmp_rootdata[i].index = i + rootOffsets[s]; 2358157edd7aSVaclav Hapla tmp_rootdata[i].rank = (PetscInt)rank; 2359157edd7aSVaclav Hapla } 23609566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(tmp_sf, MPIU_2INT, tmp_rootdata, tmp_leafdata, MPI_REPLACE)); 23619566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(tmp_sf, MPIU_2INT, tmp_rootdata, tmp_leafdata, MPI_REPLACE)); 23629566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&tmp_sf)); 23639566063dSJacob Faibussowitsch PetscCall(PetscFree(tmp_rootdata)); 2364157edd7aSVaclav Hapla } 2365157edd7aSVaclav Hapla 2366157edd7aSVaclav Hapla /* Build the new SF */ 23679566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, newsf)); 23689566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(*newsf, nRoots, nLeaves, ilocal_new, PETSC_OWN_POINTER, iremote_new, PETSC_OWN_POINTER)); 23699566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(*newsf)); 23709566063dSJacob Faibussowitsch PetscCall(PetscFree(rootOffsets)); 23719566063dSJacob Faibussowitsch PetscCall(PetscFree(leafArrayOffsets)); 2372157edd7aSVaclav Hapla PetscFunctionReturn(0); 2373157edd7aSVaclav Hapla } 2374