1af0996ceSBarry Smith #include <petsc/private/sfimpl.h> /*I "petscsf.h" I*/ 2c4e6a40aSLawrence Mitchell #include <petsc/private/hashseti.h> 353dd6d7dSJunchao Zhang #include <petsc/private/viewerimpl.h> 4*eec179cfSJacob Faibussowitsch #include <petsc/private/hashmapi.h> 595fce210SBarry Smith 67fd2d3dbSJunchao Zhang #if defined(PETSC_HAVE_CUDA) 77fd2d3dbSJunchao Zhang #include <cuda_runtime.h> 87fd2d3dbSJunchao Zhang #endif 97fd2d3dbSJunchao Zhang 107fd2d3dbSJunchao Zhang #if defined(PETSC_HAVE_HIP) 117fd2d3dbSJunchao Zhang #include <hip/hip_runtime.h> 127fd2d3dbSJunchao Zhang #endif 137fd2d3dbSJunchao Zhang 142abc8c78SJacob Faibussowitsch #if defined(PETSC_CLANG_STATIC_ANALYZER) 152abc8c78SJacob Faibussowitsch void PetscSFCheckGraphSet(PetscSF, int); 162abc8c78SJacob Faibussowitsch #else 1795fce210SBarry Smith #if defined(PETSC_USE_DEBUG) 187a46b595SBarry Smith #define PetscSFCheckGraphSet(sf, arg) PetscCheck((sf)->graphset, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Must call PetscSFSetGraph() or PetscSFSetGraphWithPattern() on argument %d \"%s\" before %s()", (arg), #sf, PETSC_FUNCTION_NAME); 1995fce210SBarry Smith #else 209371c9d4SSatish Balay #define PetscSFCheckGraphSet(sf, arg) \ 219371c9d4SSatish Balay do { \ 229371c9d4SSatish Balay } while (0) 2395fce210SBarry Smith #endif 242abc8c78SJacob Faibussowitsch #endif 2595fce210SBarry Smith 264c8fdceaSLisandro Dalcin const char *const PetscSFDuplicateOptions[] = {"CONFONLY", "RANKS", "GRAPH", "PetscSFDuplicateOption", "PETSCSF_DUPLICATE_", NULL}; 271f40158dSVaclav Hapla const char *const PetscSFConcatenateRootModes[] = {"local", "shared", "global", "PetscSFConcatenateRootMode", "PETSCSF_CONCATENATE_ROOTMODE_", NULL}; 2895fce210SBarry Smith 298af6ec1cSBarry Smith /*@ 3095fce210SBarry Smith PetscSFCreate - create a star forest communication context 3195fce210SBarry Smith 32d083f849SBarry Smith Collective 3395fce210SBarry Smith 344165533cSJose E. Roman Input Parameter: 3595fce210SBarry Smith . comm - communicator on which the star forest will operate 3695fce210SBarry Smith 374165533cSJose E. Roman Output Parameter: 3895fce210SBarry Smith . sf - new star forest context 3995fce210SBarry Smith 40dd5b3ca6SJunchao Zhang Options Database Keys: 41cab54364SBarry Smith . -sf_type type - value of type may be 42cab54364SBarry Smith .vb 43cab54364SBarry Smith basic -Use MPI persistent Isend/Irecv for communication (Default) 44cab54364SBarry Smith window -Use MPI-3 one-sided window for communication 45cab54364SBarry Smith neighbor -Use MPI-3 neighborhood collectives for communication 46cab54364SBarry Smith .ve 47dd5b3ca6SJunchao Zhang 4895fce210SBarry Smith Level: intermediate 4995fce210SBarry Smith 50cab54364SBarry Smith Note: 51cab54364SBarry Smith When one knows the communication graph is one of the predefined graph, such as `MPI_Alltoall()`, `MPI_Allgatherv()`, 52cab54364SBarry Smith `MPI_Gatherv()`, one can create a `PetscSF` and then set its graph with `PetscSFSetGraphWithPattern()`. These special 53cab54364SBarry Smith `SF`s are optimized and they have better performance than general `SF`s. 54dd5b3ca6SJunchao Zhang 55cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFSetGraph()`, `PetscSFSetGraphWithPattern()`, `PetscSFDestroy()` 5695fce210SBarry Smith @*/ 57d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFCreate(MPI_Comm comm, PetscSF *sf) 58d71ae5a4SJacob Faibussowitsch { 5995fce210SBarry Smith PetscSF b; 6095fce210SBarry Smith 6195fce210SBarry Smith PetscFunctionBegin; 6295fce210SBarry Smith PetscValidPointer(sf, 2); 639566063dSJacob Faibussowitsch PetscCall(PetscSFInitializePackage()); 6495fce210SBarry Smith 659566063dSJacob Faibussowitsch PetscCall(PetscHeaderCreate(b, PETSCSF_CLASSID, "PetscSF", "Star Forest", "PetscSF", comm, PetscSFDestroy, PetscSFView)); 6695fce210SBarry Smith 6795fce210SBarry Smith b->nroots = -1; 6895fce210SBarry Smith b->nleaves = -1; 6929046d53SLisandro Dalcin b->minleaf = PETSC_MAX_INT; 7029046d53SLisandro Dalcin b->maxleaf = PETSC_MIN_INT; 7195fce210SBarry Smith b->nranks = -1; 7295fce210SBarry Smith b->rankorder = PETSC_TRUE; 7395fce210SBarry Smith b->ingroup = MPI_GROUP_NULL; 7495fce210SBarry Smith b->outgroup = MPI_GROUP_NULL; 7595fce210SBarry Smith b->graphset = PETSC_FALSE; 7620c24465SJunchao Zhang #if defined(PETSC_HAVE_DEVICE) 7720c24465SJunchao Zhang b->use_gpu_aware_mpi = use_gpu_aware_mpi; 7820c24465SJunchao Zhang b->use_stream_aware_mpi = PETSC_FALSE; 7971438e86SJunchao Zhang b->unknown_input_stream = PETSC_FALSE; 8027f636e8SJunchao Zhang #if defined(PETSC_HAVE_KOKKOS) /* Prefer kokkos over cuda*/ 8120c24465SJunchao Zhang b->backend = PETSCSF_BACKEND_KOKKOS; 8227f636e8SJunchao Zhang #elif defined(PETSC_HAVE_CUDA) 8327f636e8SJunchao Zhang b->backend = PETSCSF_BACKEND_CUDA; 8459af0bd3SScott Kruger #elif defined(PETSC_HAVE_HIP) 8559af0bd3SScott Kruger b->backend = PETSCSF_BACKEND_HIP; 8620c24465SJunchao Zhang #endif 8771438e86SJunchao Zhang 8871438e86SJunchao Zhang #if defined(PETSC_HAVE_NVSHMEM) 8971438e86SJunchao Zhang b->use_nvshmem = PETSC_FALSE; /* Default is not to try NVSHMEM */ 9071438e86SJunchao Zhang b->use_nvshmem_get = PETSC_FALSE; /* Default is to use nvshmem_put based protocol */ 919566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetBool(NULL, NULL, "-use_nvshmem", &b->use_nvshmem, NULL)); 929566063dSJacob Faibussowitsch PetscCall(PetscOptionsGetBool(NULL, NULL, "-use_nvshmem_get", &b->use_nvshmem_get, NULL)); 9371438e86SJunchao Zhang #endif 9420c24465SJunchao Zhang #endif 9560c22052SBarry Smith b->vscat.from_n = -1; 9660c22052SBarry Smith b->vscat.to_n = -1; 9760c22052SBarry Smith b->vscat.unit = MPIU_SCALAR; 9895fce210SBarry Smith *sf = b; 9995fce210SBarry Smith PetscFunctionReturn(0); 10095fce210SBarry Smith } 10195fce210SBarry Smith 10229046d53SLisandro Dalcin /*@ 10395fce210SBarry Smith PetscSFReset - Reset a star forest so that different sizes or neighbors can be used 10495fce210SBarry Smith 10595fce210SBarry Smith Collective 10695fce210SBarry Smith 1074165533cSJose E. Roman Input Parameter: 10895fce210SBarry Smith . sf - star forest 10995fce210SBarry Smith 11095fce210SBarry Smith Level: advanced 11195fce210SBarry Smith 112cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFCreate()`, `PetscSFSetGraph()`, `PetscSFDestroy()` 11395fce210SBarry Smith @*/ 114d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFReset(PetscSF sf) 115d71ae5a4SJacob Faibussowitsch { 11695fce210SBarry Smith PetscFunctionBegin; 11795fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 118dbbe0bcdSBarry Smith PetscTryTypeMethod(sf, Reset); 11929046d53SLisandro Dalcin sf->nroots = -1; 12029046d53SLisandro Dalcin sf->nleaves = -1; 12129046d53SLisandro Dalcin sf->minleaf = PETSC_MAX_INT; 12229046d53SLisandro Dalcin sf->maxleaf = PETSC_MIN_INT; 12395fce210SBarry Smith sf->mine = NULL; 12495fce210SBarry Smith sf->remote = NULL; 12529046d53SLisandro Dalcin sf->graphset = PETSC_FALSE; 1269566063dSJacob Faibussowitsch PetscCall(PetscFree(sf->mine_alloc)); 1279566063dSJacob Faibussowitsch PetscCall(PetscFree(sf->remote_alloc)); 12821c688dcSJed Brown sf->nranks = -1; 1299566063dSJacob Faibussowitsch PetscCall(PetscFree4(sf->ranks, sf->roffset, sf->rmine, sf->rremote)); 13029046d53SLisandro Dalcin sf->degreeknown = PETSC_FALSE; 1319566063dSJacob Faibussowitsch PetscCall(PetscFree(sf->degree)); 1329566063dSJacob Faibussowitsch if (sf->ingroup != MPI_GROUP_NULL) PetscCallMPI(MPI_Group_free(&sf->ingroup)); 1339566063dSJacob Faibussowitsch if (sf->outgroup != MPI_GROUP_NULL) PetscCallMPI(MPI_Group_free(&sf->outgroup)); 134013b3241SStefano Zampini if (sf->multi) sf->multi->multi = NULL; 1359566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&sf->multi)); 1369566063dSJacob Faibussowitsch PetscCall(PetscLayoutDestroy(&sf->map)); 13771438e86SJunchao Zhang 13871438e86SJunchao Zhang #if defined(PETSC_HAVE_DEVICE) 1399566063dSJacob Faibussowitsch for (PetscInt i = 0; i < 2; i++) PetscCall(PetscSFFree(sf, PETSC_MEMTYPE_DEVICE, sf->rmine_d[i])); 14071438e86SJunchao Zhang #endif 14171438e86SJunchao Zhang 14295fce210SBarry Smith sf->setupcalled = PETSC_FALSE; 14395fce210SBarry Smith PetscFunctionReturn(0); 14495fce210SBarry Smith } 14595fce210SBarry Smith 14695fce210SBarry Smith /*@C 147cab54364SBarry Smith PetscSFSetType - Set the `PetscSF` communication implementation 14895fce210SBarry Smith 149cab54364SBarry Smith Collective on sf 15095fce210SBarry Smith 15195fce210SBarry Smith Input Parameters: 152cab54364SBarry Smith + sf - the `PetscSF` context 15395fce210SBarry Smith - type - a known method 154cab54364SBarry Smith .vb 155cab54364SBarry Smith PETSCSFWINDOW - MPI-2/3 one-sided 156cab54364SBarry Smith PETSCSFBASIC - basic implementation using MPI-1 two-sided 157cab54364SBarry Smith .ve 15895fce210SBarry Smith 15995fce210SBarry Smith Options Database Key: 160cab54364SBarry Smith . -sf_type <type> - Sets the method; for example basic or window use -help for a list of available methods (for instance, window, basic, neighbor) 161cab54364SBarry Smith 162cab54364SBarry Smith Level: intermediate 16395fce210SBarry Smith 16495fce210SBarry Smith Notes: 16595fce210SBarry Smith See "include/petscsf.h" for available methods (for instance) 16695fce210SBarry Smith 167db781477SPatrick Sanan .seealso: `PetscSFType`, `PetscSFCreate()` 16895fce210SBarry Smith @*/ 169d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFSetType(PetscSF sf, PetscSFType type) 170d71ae5a4SJacob Faibussowitsch { 17195fce210SBarry Smith PetscBool match; 1725f80ce2aSJacob Faibussowitsch PetscErrorCode (*r)(PetscSF); 17395fce210SBarry Smith 17495fce210SBarry Smith PetscFunctionBegin; 17595fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 17695fce210SBarry Smith PetscValidCharPointer(type, 2); 17795fce210SBarry Smith 1789566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)sf, type, &match)); 17995fce210SBarry Smith if (match) PetscFunctionReturn(0); 18095fce210SBarry Smith 1819566063dSJacob Faibussowitsch PetscCall(PetscFunctionListFind(PetscSFList, type, &r)); 18228b400f6SJacob Faibussowitsch PetscCheck(r, PETSC_COMM_SELF, PETSC_ERR_ARG_UNKNOWN_TYPE, "Unable to find requested PetscSF type %s", type); 18329046d53SLisandro Dalcin /* Destroy the previous PetscSF implementation context */ 184dbbe0bcdSBarry Smith PetscTryTypeMethod(sf, Destroy); 1859566063dSJacob Faibussowitsch PetscCall(PetscMemzero(sf->ops, sizeof(*sf->ops))); 1869566063dSJacob Faibussowitsch PetscCall(PetscObjectChangeTypeName((PetscObject)sf, type)); 1879566063dSJacob Faibussowitsch PetscCall((*r)(sf)); 18895fce210SBarry Smith PetscFunctionReturn(0); 18995fce210SBarry Smith } 19095fce210SBarry Smith 19129046d53SLisandro Dalcin /*@C 192cab54364SBarry Smith PetscSFGetType - Get the `PetscSF` communication implementation 19329046d53SLisandro Dalcin 19429046d53SLisandro Dalcin Not Collective 19529046d53SLisandro Dalcin 19629046d53SLisandro Dalcin Input Parameter: 197cab54364SBarry Smith . sf - the `PetscSF` context 19829046d53SLisandro Dalcin 19929046d53SLisandro Dalcin Output Parameter: 200cab54364SBarry Smith . type - the `PetscSF` type name 20129046d53SLisandro Dalcin 20229046d53SLisandro Dalcin Level: intermediate 20329046d53SLisandro Dalcin 204cab54364SBarry Smith .seealso: `PetscSFType`, `PetscSFSetType()`, `PetscSFCreate()` 20529046d53SLisandro Dalcin @*/ 206d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFGetType(PetscSF sf, PetscSFType *type) 207d71ae5a4SJacob Faibussowitsch { 20829046d53SLisandro Dalcin PetscFunctionBegin; 20929046d53SLisandro Dalcin PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 21029046d53SLisandro Dalcin PetscValidPointer(type, 2); 21129046d53SLisandro Dalcin *type = ((PetscObject)sf)->type_name; 21229046d53SLisandro Dalcin PetscFunctionReturn(0); 21329046d53SLisandro Dalcin } 21429046d53SLisandro Dalcin 2151fb7b255SJunchao Zhang /*@C 21695fce210SBarry Smith PetscSFDestroy - destroy star forest 21795fce210SBarry Smith 21895fce210SBarry Smith Collective 21995fce210SBarry Smith 2204165533cSJose E. Roman Input Parameter: 22195fce210SBarry Smith . sf - address of star forest 22295fce210SBarry Smith 22395fce210SBarry Smith Level: intermediate 22495fce210SBarry Smith 225cab54364SBarry Smith .seealso: `PetscSFType`, `PetscSFCreate()`, `PetscSFReset()` 22695fce210SBarry Smith @*/ 227d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFDestroy(PetscSF *sf) 228d71ae5a4SJacob Faibussowitsch { 22995fce210SBarry Smith PetscFunctionBegin; 23095fce210SBarry Smith if (!*sf) PetscFunctionReturn(0); 23195fce210SBarry Smith PetscValidHeaderSpecific((*sf), PETSCSF_CLASSID, 1); 2329371c9d4SSatish Balay if (--((PetscObject)(*sf))->refct > 0) { 2339371c9d4SSatish Balay *sf = NULL; 2349371c9d4SSatish Balay PetscFunctionReturn(0); 2359371c9d4SSatish Balay } 2369566063dSJacob Faibussowitsch PetscCall(PetscSFReset(*sf)); 237dbbe0bcdSBarry Smith PetscTryTypeMethod((*sf), Destroy); 2389566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&(*sf)->vscat.lsf)); 2399566063dSJacob Faibussowitsch if ((*sf)->vscat.bs > 1) PetscCallMPI(MPI_Type_free(&(*sf)->vscat.unit)); 2409566063dSJacob Faibussowitsch PetscCall(PetscHeaderDestroy(sf)); 24195fce210SBarry Smith PetscFunctionReturn(0); 24295fce210SBarry Smith } 24395fce210SBarry Smith 244d71ae5a4SJacob Faibussowitsch static PetscErrorCode PetscSFCheckGraphValid_Private(PetscSF sf) 245d71ae5a4SJacob Faibussowitsch { 246c4e6a40aSLawrence Mitchell PetscInt i, nleaves; 247c4e6a40aSLawrence Mitchell PetscMPIInt size; 248c4e6a40aSLawrence Mitchell const PetscInt *ilocal; 249c4e6a40aSLawrence Mitchell const PetscSFNode *iremote; 250c4e6a40aSLawrence Mitchell 251c4e6a40aSLawrence Mitchell PetscFunctionBegin; 25276bd3646SJed Brown if (!sf->graphset || !PetscDefined(USE_DEBUG)) PetscFunctionReturn(0); 2539566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sf, NULL, &nleaves, &ilocal, &iremote)); 2549566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)sf), &size)); 255c4e6a40aSLawrence Mitchell for (i = 0; i < nleaves; i++) { 256c4e6a40aSLawrence Mitchell const PetscInt rank = iremote[i].rank; 257c4e6a40aSLawrence Mitchell const PetscInt remote = iremote[i].index; 258c4e6a40aSLawrence Mitchell const PetscInt leaf = ilocal ? ilocal[i] : i; 259c9cc58a2SBarry Smith PetscCheck(rank >= 0 && rank < size, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Provided rank (%" PetscInt_FMT ") for remote %" PetscInt_FMT " is invalid, should be in [0, %d)", rank, i, size); 26008401ef6SPierre Jolivet PetscCheck(remote >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Provided index (%" PetscInt_FMT ") for remote %" PetscInt_FMT " is invalid, should be >= 0", remote, i); 26108401ef6SPierre Jolivet PetscCheck(leaf >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Provided location (%" PetscInt_FMT ") for leaf %" PetscInt_FMT " is invalid, should be >= 0", leaf, i); 262c4e6a40aSLawrence Mitchell } 263c4e6a40aSLawrence Mitchell PetscFunctionReturn(0); 264c4e6a40aSLawrence Mitchell } 265c4e6a40aSLawrence Mitchell 26695fce210SBarry Smith /*@ 26795fce210SBarry Smith PetscSFSetUp - set up communication structures 26895fce210SBarry Smith 26995fce210SBarry Smith Collective 27095fce210SBarry Smith 2714165533cSJose E. Roman Input Parameter: 27295fce210SBarry Smith . sf - star forest communication object 27395fce210SBarry Smith 27495fce210SBarry Smith Level: beginner 27595fce210SBarry Smith 276cab54364SBarry Smith .seealso: `PetscSFType`, `PetscSFSetFromOptions()`, `PetscSFSetType()` 27795fce210SBarry Smith @*/ 278d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFSetUp(PetscSF sf) 279d71ae5a4SJacob Faibussowitsch { 28095fce210SBarry Smith PetscFunctionBegin; 28129046d53SLisandro Dalcin PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 28229046d53SLisandro Dalcin PetscSFCheckGraphSet(sf, 1); 28395fce210SBarry Smith if (sf->setupcalled) PetscFunctionReturn(0); 2849566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(PETSCSF_SetUp, sf, 0, 0, 0)); 2859566063dSJacob Faibussowitsch PetscCall(PetscSFCheckGraphValid_Private(sf)); 2869566063dSJacob Faibussowitsch if (!((PetscObject)sf)->type_name) PetscCall(PetscSFSetType(sf, PETSCSFBASIC)); /* Zero all sf->ops */ 287dbbe0bcdSBarry Smith PetscTryTypeMethod(sf, SetUp); 28820c24465SJunchao Zhang #if defined(PETSC_HAVE_CUDA) 28920c24465SJunchao Zhang if (sf->backend == PETSCSF_BACKEND_CUDA) { 29071438e86SJunchao Zhang sf->ops->Malloc = PetscSFMalloc_CUDA; 29171438e86SJunchao Zhang sf->ops->Free = PetscSFFree_CUDA; 29220c24465SJunchao Zhang } 29320c24465SJunchao Zhang #endif 29459af0bd3SScott Kruger #if defined(PETSC_HAVE_HIP) 29559af0bd3SScott Kruger if (sf->backend == PETSCSF_BACKEND_HIP) { 29659af0bd3SScott Kruger sf->ops->Malloc = PetscSFMalloc_HIP; 29759af0bd3SScott Kruger sf->ops->Free = PetscSFFree_HIP; 29859af0bd3SScott Kruger } 29959af0bd3SScott Kruger #endif 30020c24465SJunchao Zhang 30159af0bd3SScott Kruger # 30220c24465SJunchao Zhang #if defined(PETSC_HAVE_KOKKOS) 30320c24465SJunchao Zhang if (sf->backend == PETSCSF_BACKEND_KOKKOS) { 30420c24465SJunchao Zhang sf->ops->Malloc = PetscSFMalloc_Kokkos; 30520c24465SJunchao Zhang sf->ops->Free = PetscSFFree_Kokkos; 30620c24465SJunchao Zhang } 30720c24465SJunchao Zhang #endif 3089566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(PETSCSF_SetUp, sf, 0, 0, 0)); 30995fce210SBarry Smith sf->setupcalled = PETSC_TRUE; 31095fce210SBarry Smith PetscFunctionReturn(0); 31195fce210SBarry Smith } 31295fce210SBarry Smith 3138af6ec1cSBarry Smith /*@ 314cab54364SBarry Smith PetscSFSetFromOptions - set `PetscSF` options using the options database 31595fce210SBarry Smith 31695fce210SBarry Smith Logically Collective 31795fce210SBarry Smith 3184165533cSJose E. Roman Input Parameter: 31995fce210SBarry Smith . sf - star forest 32095fce210SBarry Smith 32195fce210SBarry Smith Options Database Keys: 32260263706SJed Brown + -sf_type - implementation type, see PetscSFSetType() 32351ccb202SJunchao Zhang . -sf_rank_order - sort composite points for gathers and scatters in rank order, gathers are non-deterministic otherwise 324b85e67b7SJunchao Zhang . -sf_use_default_stream - Assume callers of SF computed the input root/leafdata with the default cuda stream. SF will also 325c2a741eeSJunchao Zhang use the default stream to process data. Therefore, no stream synchronization is needed between SF and its caller (default: true). 326c06a8e02SRichard Tran Mills If true, this option only works with -use_gpu_aware_mpi 1. 32720c24465SJunchao Zhang . -sf_use_stream_aware_mpi - Assume the underlying MPI is cuda-stream aware and SF won't sync streams for send/recv buffers passed to MPI (default: false). 328c06a8e02SRichard Tran Mills If true, this option only works with -use_gpu_aware_mpi 1. 32995fce210SBarry Smith 33059af0bd3SScott Kruger - -sf_backend cuda | hip | kokkos -Select the device backend SF uses. Currently SF has these backends: cuda, hip and Kokkos. 33159af0bd3SScott Kruger On CUDA (HIP) devices, one can choose cuda (hip) or kokkos with the default being kokkos. On other devices, 33220c24465SJunchao Zhang the only available is kokkos. 33320c24465SJunchao Zhang 33495fce210SBarry Smith Level: intermediate 335cab54364SBarry Smith 336cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFCreate()`, `PetscSFSetType()` 33795fce210SBarry Smith @*/ 338d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFSetFromOptions(PetscSF sf) 339d71ae5a4SJacob Faibussowitsch { 34095fce210SBarry Smith PetscSFType deft; 34195fce210SBarry Smith char type[256]; 34295fce210SBarry Smith PetscBool flg; 34395fce210SBarry Smith 34495fce210SBarry Smith PetscFunctionBegin; 34595fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 346d0609cedSBarry Smith PetscObjectOptionsBegin((PetscObject)sf); 34795fce210SBarry Smith deft = ((PetscObject)sf)->type_name ? ((PetscObject)sf)->type_name : PETSCSFBASIC; 3489566063dSJacob Faibussowitsch PetscCall(PetscOptionsFList("-sf_type", "PetscSF implementation type", "PetscSFSetType", PetscSFList, deft, type, sizeof(type), &flg)); 3499566063dSJacob Faibussowitsch PetscCall(PetscSFSetType(sf, flg ? type : deft)); 3509566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-sf_rank_order", "sort composite points for gathers and scatters in rank order, gathers are non-deterministic otherwise", "PetscSFSetRankOrder", sf->rankorder, &sf->rankorder, NULL)); 3517fd2d3dbSJunchao Zhang #if defined(PETSC_HAVE_DEVICE) 35220c24465SJunchao Zhang { 35320c24465SJunchao Zhang char backendstr[32] = {0}; 35459af0bd3SScott Kruger PetscBool isCuda = PETSC_FALSE, isHip = PETSC_FALSE, isKokkos = PETSC_FALSE, set; 35520c24465SJunchao Zhang /* Change the defaults set in PetscSFCreate() with command line options */ 356d5b43468SJose E. Roman PetscCall(PetscOptionsBool("-sf_unknown_input_stream", "SF root/leafdata is computed on arbitrary streams unknown to SF", "PetscSFSetFromOptions", sf->unknown_input_stream, &sf->unknown_input_stream, NULL)); 3579566063dSJacob Faibussowitsch PetscCall(PetscOptionsBool("-sf_use_stream_aware_mpi", "Assume the underlying MPI is cuda-stream aware", "PetscSFSetFromOptions", sf->use_stream_aware_mpi, &sf->use_stream_aware_mpi, NULL)); 3589566063dSJacob Faibussowitsch PetscCall(PetscOptionsString("-sf_backend", "Select the device backend SF uses", "PetscSFSetFromOptions", NULL, backendstr, sizeof(backendstr), &set)); 3599566063dSJacob Faibussowitsch PetscCall(PetscStrcasecmp("cuda", backendstr, &isCuda)); 3609566063dSJacob Faibussowitsch PetscCall(PetscStrcasecmp("kokkos", backendstr, &isKokkos)); 3619566063dSJacob Faibussowitsch PetscCall(PetscStrcasecmp("hip", backendstr, &isHip)); 36259af0bd3SScott Kruger #if defined(PETSC_HAVE_CUDA) || defined(PETSC_HAVE_HIP) 36320c24465SJunchao Zhang if (isCuda) sf->backend = PETSCSF_BACKEND_CUDA; 36420c24465SJunchao Zhang else if (isKokkos) sf->backend = PETSCSF_BACKEND_KOKKOS; 36559af0bd3SScott Kruger else if (isHip) sf->backend = PETSCSF_BACKEND_HIP; 36628b400f6SJacob Faibussowitsch else PetscCheck(!set, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "-sf_backend %s is not supported. You may choose cuda, hip or kokkos (if installed)", backendstr); 36720c24465SJunchao Zhang #elif defined(PETSC_HAVE_KOKKOS) 36808401ef6SPierre Jolivet PetscCheck(!set || isKokkos, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "-sf_backend %s is not supported. You can only choose kokkos", backendstr); 36920c24465SJunchao Zhang #endif 37020c24465SJunchao Zhang } 371c2a741eeSJunchao Zhang #endif 372dbbe0bcdSBarry Smith PetscTryTypeMethod(sf, SetFromOptions, PetscOptionsObject); 373d0609cedSBarry Smith PetscOptionsEnd(); 37495fce210SBarry Smith PetscFunctionReturn(0); 37595fce210SBarry Smith } 37695fce210SBarry Smith 37729046d53SLisandro Dalcin /*@ 37895fce210SBarry Smith PetscSFSetRankOrder - sort multi-points for gathers and scatters by rank order 37995fce210SBarry Smith 38095fce210SBarry Smith Logically Collective 38195fce210SBarry Smith 3824165533cSJose E. Roman Input Parameters: 38395fce210SBarry Smith + sf - star forest 384cab54364SBarry Smith - flg - `PETSC_TRUE` to sort, `PETSC_FALSE` to skip sorting (lower setup cost, but non-deterministic) 38595fce210SBarry Smith 38695fce210SBarry Smith Level: advanced 38795fce210SBarry Smith 388cab54364SBarry Smith .seealso: `PetscSFType`, `PetscSFGatherBegin()`, `PetscSFScatterBegin()` 38995fce210SBarry Smith @*/ 390d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFSetRankOrder(PetscSF sf, PetscBool flg) 391d71ae5a4SJacob Faibussowitsch { 39295fce210SBarry Smith PetscFunctionBegin; 39395fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 39495fce210SBarry Smith PetscValidLogicalCollectiveBool(sf, flg, 2); 39528b400f6SJacob Faibussowitsch PetscCheck(!sf->multi, PetscObjectComm((PetscObject)sf), PETSC_ERR_ARG_WRONGSTATE, "Rank ordering must be set before first call to PetscSFGatherBegin() or PetscSFScatterBegin()"); 39695fce210SBarry Smith sf->rankorder = flg; 39795fce210SBarry Smith PetscFunctionReturn(0); 39895fce210SBarry Smith } 39995fce210SBarry Smith 4008dbb0df6SBarry Smith /*@C 40195fce210SBarry Smith PetscSFSetGraph - Set a parallel star forest 40295fce210SBarry Smith 40395fce210SBarry Smith Collective 40495fce210SBarry Smith 4054165533cSJose E. Roman Input Parameters: 40695fce210SBarry Smith + sf - star forest 40795fce210SBarry Smith . nroots - number of root vertices on the current process (these are possible targets for other process to attach leaves) 40895fce210SBarry Smith . nleaves - number of leaf vertices on the current process, each of these references a root on any process 409c4e6a40aSLawrence Mitchell . ilocal - locations of leaves in leafdata buffers, pass NULL for contiguous storage (locations must be >= 0, enforced 410c4e6a40aSLawrence Mitchell during setup in debug mode) 41195fce210SBarry Smith . localmode - copy mode for ilocal 412c4e6a40aSLawrence Mitchell . iremote - remote locations of root vertices for each leaf on the current process (locations must be >= 0, enforced 413c4e6a40aSLawrence Mitchell during setup in debug mode) 41495fce210SBarry Smith - remotemode - copy mode for iremote 41595fce210SBarry Smith 41695fce210SBarry Smith Level: intermediate 41795fce210SBarry Smith 41895452b02SPatrick Sanan Notes: 419db2b9530SVaclav Hapla Leaf indices in ilocal must be unique, otherwise an error occurs. 42038ab3f8aSBarry Smith 421db2b9530SVaclav Hapla Input arrays ilocal and iremote follow the PetscCopyMode semantics. 422cab54364SBarry Smith In particular, if localmode/remotemode is `PETSC_OWN_POINTER` or `PETSC_USE_POINTER`, 423db2b9530SVaclav Hapla PETSc might modify the respective array; 424cab54364SBarry Smith if `PETSC_USE_POINTER`, the user must delete the array after PetscSFDestroy(). 425cab54364SBarry Smith Only if `PETSC_COPY_VALUES` is used, the respective array is guaranteed to stay intact and a const array can be passed (but a cast to non-const is needed). 426db2b9530SVaclav Hapla 427cab54364SBarry Smith Fortran Note: 428db2b9530SVaclav Hapla In Fortran you must use PETSC_COPY_VALUES for localmode and remotemode. 429c4e6a40aSLawrence Mitchell 430cab54364SBarry Smith Developer Note: 431db2b9530SVaclav Hapla We sort leaves to check for duplicates and contiguousness and to find minleaf/maxleaf. 432db2b9530SVaclav Hapla This also allows to compare leaf sets of two SFs easily. 43372bf8598SVaclav Hapla 434cab54364SBarry Smith .seealso: `PetscSFType`, `PetscSFCreate()`, `PetscSFView()`, `PetscSFGetGraph()` 43595fce210SBarry Smith @*/ 436d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFSetGraph(PetscSF sf, PetscInt nroots, PetscInt nleaves, PetscInt *ilocal, PetscCopyMode localmode, PetscSFNode *iremote, PetscCopyMode remotemode) 437d71ae5a4SJacob Faibussowitsch { 438db2b9530SVaclav Hapla PetscBool unique, contiguous; 43995fce210SBarry Smith 44095fce210SBarry Smith PetscFunctionBegin; 44195fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 44229046d53SLisandro Dalcin if (nleaves > 0 && ilocal) PetscValidIntPointer(ilocal, 4); 44329046d53SLisandro Dalcin if (nleaves > 0) PetscValidPointer(iremote, 6); 44408401ef6SPierre Jolivet PetscCheck(nroots >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "nroots %" PetscInt_FMT ", cannot be negative", nroots); 44508401ef6SPierre Jolivet PetscCheck(nleaves >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "nleaves %" PetscInt_FMT ", cannot be negative", nleaves); 4468da24d32SBarry Smith /* enums may be handled as unsigned by some compilers, NVHPC for example, the int cast 4478da24d32SBarry Smith * below is to prevent NVHPC from warning about meaningless comparison of unsigned with zero */ 4488da24d32SBarry Smith PetscCheck((int)localmode >= PETSC_COPY_VALUES && localmode <= PETSC_USE_POINTER, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Wrong localmode %d", localmode); 4498da24d32SBarry Smith PetscCheck((int)remotemode >= PETSC_COPY_VALUES && remotemode <= PETSC_USE_POINTER, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Wrong remotemode %d", remotemode); 45029046d53SLisandro Dalcin 4512a67d2daSStefano Zampini if (sf->nroots >= 0) { /* Reset only if graph already set */ 4529566063dSJacob Faibussowitsch PetscCall(PetscSFReset(sf)); 4532a67d2daSStefano Zampini } 4542a67d2daSStefano Zampini 4559566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(PETSCSF_SetGraph, sf, 0, 0, 0)); 45629046d53SLisandro Dalcin 45795fce210SBarry Smith sf->nroots = nroots; 45895fce210SBarry Smith sf->nleaves = nleaves; 45929046d53SLisandro Dalcin 460db2b9530SVaclav Hapla if (localmode == PETSC_COPY_VALUES && ilocal) { 461db2b9530SVaclav Hapla PetscInt *tlocal = NULL; 462db2b9530SVaclav Hapla 4639566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nleaves, &tlocal)); 4649566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(tlocal, ilocal, nleaves)); 465db2b9530SVaclav Hapla ilocal = tlocal; 466db2b9530SVaclav Hapla } 467db2b9530SVaclav Hapla if (remotemode == PETSC_COPY_VALUES) { 468db2b9530SVaclav Hapla PetscSFNode *tremote = NULL; 469db2b9530SVaclav Hapla 4709566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nleaves, &tremote)); 4719566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(tremote, iremote, nleaves)); 472db2b9530SVaclav Hapla iremote = tremote; 473db2b9530SVaclav Hapla } 474db2b9530SVaclav Hapla 47529046d53SLisandro Dalcin if (nleaves && ilocal) { 476db2b9530SVaclav Hapla PetscSFNode work; 477db2b9530SVaclav Hapla 4789566063dSJacob Faibussowitsch PetscCall(PetscSortIntWithDataArray(nleaves, ilocal, iremote, sizeof(PetscSFNode), &work)); 4799566063dSJacob Faibussowitsch PetscCall(PetscSortedCheckDupsInt(nleaves, ilocal, &unique)); 480db2b9530SVaclav Hapla unique = PetscNot(unique); 481db2b9530SVaclav Hapla PetscCheck(sf->allow_multi_leaves || unique, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONG, "Input ilocal has duplicate entries which is not allowed for this PetscSF"); 482db2b9530SVaclav Hapla sf->minleaf = ilocal[0]; 483db2b9530SVaclav Hapla sf->maxleaf = ilocal[nleaves - 1]; 484db2b9530SVaclav Hapla contiguous = (PetscBool)(unique && ilocal[0] == 0 && ilocal[nleaves - 1] == nleaves - 1); 48529046d53SLisandro Dalcin } else { 48629046d53SLisandro Dalcin sf->minleaf = 0; 48729046d53SLisandro Dalcin sf->maxleaf = nleaves - 1; 488db2b9530SVaclav Hapla unique = PETSC_TRUE; 489db2b9530SVaclav Hapla contiguous = PETSC_TRUE; 49029046d53SLisandro Dalcin } 49129046d53SLisandro Dalcin 492db2b9530SVaclav Hapla if (contiguous) { 493db2b9530SVaclav Hapla if (localmode == PETSC_USE_POINTER) { 494db2b9530SVaclav Hapla ilocal = NULL; 495db2b9530SVaclav Hapla } else { 4969566063dSJacob Faibussowitsch PetscCall(PetscFree(ilocal)); 497db2b9530SVaclav Hapla } 498db2b9530SVaclav Hapla } 499db2b9530SVaclav Hapla sf->mine = ilocal; 500db2b9530SVaclav Hapla if (localmode == PETSC_USE_POINTER) { 50129046d53SLisandro Dalcin sf->mine_alloc = NULL; 502db2b9530SVaclav Hapla } else { 503db2b9530SVaclav Hapla sf->mine_alloc = ilocal; 50495fce210SBarry Smith } 505db2b9530SVaclav Hapla sf->remote = iremote; 506db2b9530SVaclav Hapla if (remotemode == PETSC_USE_POINTER) { 50729046d53SLisandro Dalcin sf->remote_alloc = NULL; 508db2b9530SVaclav Hapla } else { 509db2b9530SVaclav Hapla sf->remote_alloc = iremote; 51095fce210SBarry Smith } 5119566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(PETSCSF_SetGraph, sf, 0, 0, 0)); 51229046d53SLisandro Dalcin sf->graphset = PETSC_TRUE; 51395fce210SBarry Smith PetscFunctionReturn(0); 51495fce210SBarry Smith } 51595fce210SBarry Smith 51629046d53SLisandro Dalcin /*@ 517cab54364SBarry Smith PetscSFSetGraphWithPattern - Sets the graph of a `PetscSF` with a specific pattern 518dd5b3ca6SJunchao Zhang 519dd5b3ca6SJunchao Zhang Collective 520dd5b3ca6SJunchao Zhang 521dd5b3ca6SJunchao Zhang Input Parameters: 522cab54364SBarry Smith + sf - The `PetscSF` 523cab54364SBarry Smith . map - Layout of roots over all processes (insignificant when pattern is `PETSCSF_PATTERN_ALLTOALL`) 524cab54364SBarry Smith - pattern - One of `PETSCSF_PATTERN_ALLGATHER`, `PETSCSF_PATTERN_GATHER`, `PETSCSF_PATTERN_ALLTOALL` 525cab54364SBarry Smith 526cab54364SBarry Smith Level: intermediate 527dd5b3ca6SJunchao Zhang 528dd5b3ca6SJunchao Zhang Notes: 529cab54364SBarry Smith It is easier to explain `PetscSFPattern` using vectors. Suppose we have an MPI vector x and its layout is map. 530dd5b3ca6SJunchao Zhang n and N are local and global sizes of x respectively. 531dd5b3ca6SJunchao Zhang 532cab54364SBarry Smith With `PETSCSF_PATTERN_ALLGATHER`, the routine creates a graph that if one does Bcast on it, it will copy x to 533dd5b3ca6SJunchao Zhang sequential vectors y on all ranks. 534dd5b3ca6SJunchao Zhang 535cab54364SBarry Smith With `PETSCSF_PATTERN_GATHER`, the routine creates a graph that if one does Bcast on it, it will copy x to a 536dd5b3ca6SJunchao Zhang sequential vector y on rank 0. 537dd5b3ca6SJunchao Zhang 538dd5b3ca6SJunchao Zhang In above cases, entries of x are roots and entries of y are leaves. 539dd5b3ca6SJunchao Zhang 540cab54364SBarry Smith With `PETSCSF_PATTERN_ALLTOALL`, map is insignificant. Suppose NP is size of sf's communicator. The routine 541dd5b3ca6SJunchao Zhang creates a graph that every rank has NP leaves and NP roots. On rank i, its leaf j is connected to root i 542cab54364SBarry Smith of rank j. Here 0 <=i,j<NP. It is a kind of `MPI_Alltoall()` with sendcount/recvcount being 1. Note that it does 543dd5b3ca6SJunchao Zhang not mean one can not send multiple items. One just needs to create a new MPI datatype for the mulptiple data 544cab54364SBarry Smith items with `MPI_Type_contiguous` and use that as the <unit> argument in SF routines. 545dd5b3ca6SJunchao Zhang 546dd5b3ca6SJunchao Zhang In this case, roots and leaves are symmetric. 547dd5b3ca6SJunchao Zhang 548cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFCreate()`, `PetscSFView()`, `PetscSFGetGraph()` 549dd5b3ca6SJunchao Zhang @*/ 550d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFSetGraphWithPattern(PetscSF sf, PetscLayout map, PetscSFPattern pattern) 551d71ae5a4SJacob Faibussowitsch { 552dd5b3ca6SJunchao Zhang MPI_Comm comm; 553dd5b3ca6SJunchao Zhang PetscInt n, N, res[2]; 554dd5b3ca6SJunchao Zhang PetscMPIInt rank, size; 555dd5b3ca6SJunchao Zhang PetscSFType type; 556dd5b3ca6SJunchao Zhang 557dd5b3ca6SJunchao Zhang PetscFunctionBegin; 5582abc8c78SJacob Faibussowitsch PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 5592abc8c78SJacob Faibussowitsch if (pattern != PETSCSF_PATTERN_ALLTOALL) PetscValidPointer(map, 2); 5609566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)sf, &comm)); 5612c71b3e2SJacob Faibussowitsch PetscCheck(pattern >= PETSCSF_PATTERN_ALLGATHER && pattern <= PETSCSF_PATTERN_ALLTOALL, comm, PETSC_ERR_ARG_OUTOFRANGE, "Unsupported PetscSFPattern %d", pattern); 5629566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 5639566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(comm, &size)); 564dd5b3ca6SJunchao Zhang 565dd5b3ca6SJunchao Zhang if (pattern == PETSCSF_PATTERN_ALLTOALL) { 566dd5b3ca6SJunchao Zhang type = PETSCSFALLTOALL; 5679566063dSJacob Faibussowitsch PetscCall(PetscLayoutCreate(comm, &sf->map)); 5689566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetLocalSize(sf->map, size)); 5699566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetSize(sf->map, ((PetscInt)size) * size)); 5709566063dSJacob Faibussowitsch PetscCall(PetscLayoutSetUp(sf->map)); 571dd5b3ca6SJunchao Zhang } else { 5729566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetLocalSize(map, &n)); 5739566063dSJacob Faibussowitsch PetscCall(PetscLayoutGetSize(map, &N)); 574dd5b3ca6SJunchao Zhang res[0] = n; 575dd5b3ca6SJunchao Zhang res[1] = -n; 576dd5b3ca6SJunchao Zhang /* Check if n are same over all ranks so that we can optimize it */ 5771c2dc1cbSBarry Smith PetscCall(MPIU_Allreduce(MPI_IN_PLACE, res, 2, MPIU_INT, MPI_MAX, comm)); 578dd5b3ca6SJunchao Zhang if (res[0] == -res[1]) { /* same n */ 579dd5b3ca6SJunchao Zhang type = (pattern == PETSCSF_PATTERN_ALLGATHER) ? PETSCSFALLGATHER : PETSCSFGATHER; 580dd5b3ca6SJunchao Zhang } else { 581dd5b3ca6SJunchao Zhang type = (pattern == PETSCSF_PATTERN_ALLGATHER) ? PETSCSFALLGATHERV : PETSCSFGATHERV; 582dd5b3ca6SJunchao Zhang } 5839566063dSJacob Faibussowitsch PetscCall(PetscLayoutReference(map, &sf->map)); 584dd5b3ca6SJunchao Zhang } 5859566063dSJacob Faibussowitsch PetscCall(PetscSFSetType(sf, type)); 586dd5b3ca6SJunchao Zhang 587dd5b3ca6SJunchao Zhang sf->pattern = pattern; 588dd5b3ca6SJunchao Zhang sf->mine = NULL; /* Contiguous */ 589dd5b3ca6SJunchao Zhang 590dd5b3ca6SJunchao Zhang /* Set nleaves, nroots here in case user calls PetscSFGetGraph, which is legal to call even before PetscSFSetUp is called. 591dd5b3ca6SJunchao Zhang Also set other easy stuff. 592dd5b3ca6SJunchao Zhang */ 593dd5b3ca6SJunchao Zhang if (pattern == PETSCSF_PATTERN_ALLGATHER) { 594dd5b3ca6SJunchao Zhang sf->nleaves = N; 595dd5b3ca6SJunchao Zhang sf->nroots = n; 596dd5b3ca6SJunchao Zhang sf->nranks = size; 597dd5b3ca6SJunchao Zhang sf->minleaf = 0; 598dd5b3ca6SJunchao Zhang sf->maxleaf = N - 1; 599dd5b3ca6SJunchao Zhang } else if (pattern == PETSCSF_PATTERN_GATHER) { 600dd5b3ca6SJunchao Zhang sf->nleaves = rank ? 0 : N; 601dd5b3ca6SJunchao Zhang sf->nroots = n; 602dd5b3ca6SJunchao Zhang sf->nranks = rank ? 0 : size; 603dd5b3ca6SJunchao Zhang sf->minleaf = 0; 604dd5b3ca6SJunchao Zhang sf->maxleaf = rank ? -1 : N - 1; 605dd5b3ca6SJunchao Zhang } else if (pattern == PETSCSF_PATTERN_ALLTOALL) { 606dd5b3ca6SJunchao Zhang sf->nleaves = size; 607dd5b3ca6SJunchao Zhang sf->nroots = size; 608dd5b3ca6SJunchao Zhang sf->nranks = size; 609dd5b3ca6SJunchao Zhang sf->minleaf = 0; 610dd5b3ca6SJunchao Zhang sf->maxleaf = size - 1; 611dd5b3ca6SJunchao Zhang } 612dd5b3ca6SJunchao Zhang sf->ndranks = 0; /* We do not need to separate out distinguished ranks for patterned graphs to improve communication performance */ 613dd5b3ca6SJunchao Zhang sf->graphset = PETSC_TRUE; 614dd5b3ca6SJunchao Zhang PetscFunctionReturn(0); 615dd5b3ca6SJunchao Zhang } 616dd5b3ca6SJunchao Zhang 617dd5b3ca6SJunchao Zhang /*@ 618cab54364SBarry Smith PetscSFCreateInverseSF - given a `PetscSF` in which all vertices have degree 1, creates the inverse map 61995fce210SBarry Smith 62095fce210SBarry Smith Collective 62195fce210SBarry Smith 6224165533cSJose E. Roman Input Parameter: 62395fce210SBarry Smith . sf - star forest to invert 62495fce210SBarry Smith 6254165533cSJose E. Roman Output Parameter: 62695fce210SBarry Smith . isf - inverse of sf 6274165533cSJose E. Roman 62895fce210SBarry Smith Level: advanced 62995fce210SBarry Smith 63095fce210SBarry Smith Notes: 63195fce210SBarry Smith All roots must have degree 1. 63295fce210SBarry Smith 63395fce210SBarry Smith The local space may be a permutation, but cannot be sparse. 63495fce210SBarry Smith 635cab54364SBarry Smith .seealso: `PetscSFType`, `PetscSFSetGraph()` 63695fce210SBarry Smith @*/ 637d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFCreateInverseSF(PetscSF sf, PetscSF *isf) 638d71ae5a4SJacob Faibussowitsch { 63995fce210SBarry Smith PetscMPIInt rank; 64095fce210SBarry Smith PetscInt i, nroots, nleaves, maxlocal, count, *newilocal; 64195fce210SBarry Smith const PetscInt *ilocal; 64295fce210SBarry Smith PetscSFNode *roots, *leaves; 64395fce210SBarry Smith 64495fce210SBarry Smith PetscFunctionBegin; 64529046d53SLisandro Dalcin PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 64629046d53SLisandro Dalcin PetscSFCheckGraphSet(sf, 1); 64729046d53SLisandro Dalcin PetscValidPointer(isf, 2); 64829046d53SLisandro Dalcin 6499566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sf, &nroots, &nleaves, &ilocal, NULL)); 65029046d53SLisandro Dalcin maxlocal = sf->maxleaf + 1; /* TODO: We should use PetscSFGetLeafRange() */ 65129046d53SLisandro Dalcin 6529566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)sf), &rank)); 6539566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(nroots, &roots, maxlocal, &leaves)); 654ae9aee6dSMatthew G. Knepley for (i = 0; i < maxlocal; i++) { 65595fce210SBarry Smith leaves[i].rank = rank; 65695fce210SBarry Smith leaves[i].index = i; 65795fce210SBarry Smith } 65895fce210SBarry Smith for (i = 0; i < nroots; i++) { 65995fce210SBarry Smith roots[i].rank = -1; 66095fce210SBarry Smith roots[i].index = -1; 66195fce210SBarry Smith } 6629566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sf, MPIU_2INT, leaves, roots, MPI_REPLACE)); 6639566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf, MPIU_2INT, leaves, roots, MPI_REPLACE)); 66495fce210SBarry Smith 66595fce210SBarry Smith /* Check whether our leaves are sparse */ 6669371c9d4SSatish Balay for (i = 0, count = 0; i < nroots; i++) 6679371c9d4SSatish Balay if (roots[i].rank >= 0) count++; 66895fce210SBarry Smith if (count == nroots) newilocal = NULL; 6699371c9d4SSatish Balay else { /* Index for sparse leaves and compact "roots" array (which is to become our leaves). */ PetscCall(PetscMalloc1(count, &newilocal)); 67095fce210SBarry Smith for (i = 0, count = 0; i < nroots; i++) { 67195fce210SBarry Smith if (roots[i].rank >= 0) { 67295fce210SBarry Smith newilocal[count] = i; 67395fce210SBarry Smith roots[count].rank = roots[i].rank; 67495fce210SBarry Smith roots[count].index = roots[i].index; 67595fce210SBarry Smith count++; 67695fce210SBarry Smith } 67795fce210SBarry Smith } 67895fce210SBarry Smith } 67995fce210SBarry Smith 6809566063dSJacob Faibussowitsch PetscCall(PetscSFDuplicate(sf, PETSCSF_DUPLICATE_CONFONLY, isf)); 6819566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(*isf, maxlocal, count, newilocal, PETSC_OWN_POINTER, roots, PETSC_COPY_VALUES)); 6829566063dSJacob Faibussowitsch PetscCall(PetscFree2(roots, leaves)); 68395fce210SBarry Smith PetscFunctionReturn(0); 68495fce210SBarry Smith } 68595fce210SBarry Smith 68695fce210SBarry Smith /*@ 687cab54364SBarry Smith PetscSFDuplicate - duplicate a `PetscSF`, optionally preserving rank connectivity and graph 68895fce210SBarry Smith 68995fce210SBarry Smith Collective 69095fce210SBarry Smith 6914165533cSJose E. Roman Input Parameters: 69295fce210SBarry Smith + sf - communication object to duplicate 693cab54364SBarry Smith - opt - `PETSCSF_DUPLICATE_CONFONLY`, `PETSCSF_DUPLICATE_RANKS`, or `PETSCSF_DUPLICATE_GRAPH` (see `PetscSFDuplicateOption`) 69495fce210SBarry Smith 6954165533cSJose E. Roman Output Parameter: 69695fce210SBarry Smith . newsf - new communication object 69795fce210SBarry Smith 69895fce210SBarry Smith Level: beginner 69995fce210SBarry Smith 700cab54364SBarry Smith .seealso: `PetscSFType`, `PetscSFCreate()`, `PetscSFSetType()`, `PetscSFSetGraph()` 70195fce210SBarry Smith @*/ 702d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFDuplicate(PetscSF sf, PetscSFDuplicateOption opt, PetscSF *newsf) 703d71ae5a4SJacob Faibussowitsch { 70429046d53SLisandro Dalcin PetscSFType type; 70597929ea7SJunchao Zhang MPI_Datatype dtype = MPIU_SCALAR; 70695fce210SBarry Smith 70795fce210SBarry Smith PetscFunctionBegin; 70829046d53SLisandro Dalcin PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 70929046d53SLisandro Dalcin PetscValidLogicalCollectiveEnum(sf, opt, 2); 71029046d53SLisandro Dalcin PetscValidPointer(newsf, 3); 7119566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)sf), newsf)); 7129566063dSJacob Faibussowitsch PetscCall(PetscSFGetType(sf, &type)); 7139566063dSJacob Faibussowitsch if (type) PetscCall(PetscSFSetType(*newsf, type)); 71454a24607SJunchao Zhang (*newsf)->allow_multi_leaves = sf->allow_multi_leaves; /* Dup this flag ealier since PetscSFSetGraph() below checks on this flag */ 71595fce210SBarry Smith if (opt == PETSCSF_DUPLICATE_GRAPH) { 716dd5b3ca6SJunchao Zhang PetscSFCheckGraphSet(sf, 1); 717dd5b3ca6SJunchao Zhang if (sf->pattern == PETSCSF_PATTERN_GENERAL) { 71895fce210SBarry Smith PetscInt nroots, nleaves; 71995fce210SBarry Smith const PetscInt *ilocal; 72095fce210SBarry Smith const PetscSFNode *iremote; 7219566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sf, &nroots, &nleaves, &ilocal, &iremote)); 7229566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(*newsf, nroots, nleaves, (PetscInt *)ilocal, PETSC_COPY_VALUES, (PetscSFNode *)iremote, PETSC_COPY_VALUES)); 723dd5b3ca6SJunchao Zhang } else { 7249566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraphWithPattern(*newsf, sf->map, sf->pattern)); 725dd5b3ca6SJunchao Zhang } 72695fce210SBarry Smith } 72797929ea7SJunchao Zhang /* Since oldtype is committed, so is newtype, according to MPI */ 7289566063dSJacob Faibussowitsch if (sf->vscat.bs > 1) PetscCallMPI(MPI_Type_dup(sf->vscat.unit, &dtype)); 72997929ea7SJunchao Zhang (*newsf)->vscat.bs = sf->vscat.bs; 73097929ea7SJunchao Zhang (*newsf)->vscat.unit = dtype; 73197929ea7SJunchao Zhang (*newsf)->vscat.to_n = sf->vscat.to_n; 73297929ea7SJunchao Zhang (*newsf)->vscat.from_n = sf->vscat.from_n; 73397929ea7SJunchao Zhang /* Do not copy lsf. Build it on demand since it is rarely used */ 73497929ea7SJunchao Zhang 73520c24465SJunchao Zhang #if defined(PETSC_HAVE_DEVICE) 73620c24465SJunchao Zhang (*newsf)->backend = sf->backend; 73771438e86SJunchao Zhang (*newsf)->unknown_input_stream = sf->unknown_input_stream; 73820c24465SJunchao Zhang (*newsf)->use_gpu_aware_mpi = sf->use_gpu_aware_mpi; 73920c24465SJunchao Zhang (*newsf)->use_stream_aware_mpi = sf->use_stream_aware_mpi; 74020c24465SJunchao Zhang #endif 741dbbe0bcdSBarry Smith PetscTryTypeMethod(sf, Duplicate, opt, *newsf); 74220c24465SJunchao Zhang /* Don't do PetscSFSetUp() since the new sf's graph might have not been set. */ 74395fce210SBarry Smith PetscFunctionReturn(0); 74495fce210SBarry Smith } 74595fce210SBarry Smith 74695fce210SBarry Smith /*@C 74795fce210SBarry Smith PetscSFGetGraph - Get the graph specifying a parallel star forest 74895fce210SBarry Smith 74995fce210SBarry Smith Not Collective 75095fce210SBarry Smith 7514165533cSJose E. Roman Input Parameter: 75295fce210SBarry Smith . sf - star forest 75395fce210SBarry Smith 7544165533cSJose E. Roman Output Parameters: 75595fce210SBarry Smith + nroots - number of root vertices on the current process (these are possible targets for other process to attach leaves) 75695fce210SBarry Smith . nleaves - number of leaf vertices on the current process, each of these references a root on any process 757bc6585dcSJunchao Zhang . ilocal - locations of leaves in leafdata buffers (if returned value is NULL, it means leaves are in contiguous storage) 75895fce210SBarry Smith - iremote - remote locations of root vertices for each leaf on the current process 75995fce210SBarry Smith 760cab54364SBarry Smith Level: intermediate 761cab54364SBarry Smith 762373e0d91SLisandro Dalcin Notes: 763373e0d91SLisandro Dalcin We are not currently requiring that the graph is set, thus returning nroots=-1 if it has not been set yet 764373e0d91SLisandro Dalcin 765cab54364SBarry Smith The returned ilocal/iremote might contain values in different order than the input ones in `PetscSFSetGraph()`, 766db2b9530SVaclav Hapla see its manpage for details. 767db2b9530SVaclav Hapla 7688dbb0df6SBarry Smith Fortran Notes: 7698dbb0df6SBarry Smith The returned iremote array is a copy and must be deallocated after use. Consequently, if you 770cab54364SBarry Smith want to update the graph, you must call `PetscSFSetGraph()` after modifying the iremote array. 7718dbb0df6SBarry Smith 7728dbb0df6SBarry Smith To check for a NULL ilocal use 7738dbb0df6SBarry Smith $ if (loc(ilocal) == loc(PETSC_NULL_INTEGER)) then 774ca797d7aSLawrence Mitchell 775cab54364SBarry Smith .seealso: `PetscSFType`, `PetscSFCreate()`, `PetscSFView()`, `PetscSFSetGraph()` 77695fce210SBarry Smith @*/ 777d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFGetGraph(PetscSF sf, PetscInt *nroots, PetscInt *nleaves, const PetscInt **ilocal, const PetscSFNode **iremote) 778d71ae5a4SJacob Faibussowitsch { 77995fce210SBarry Smith PetscFunctionBegin; 78095fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 781b8dee149SJunchao Zhang if (sf->ops->GetGraph) { 7829566063dSJacob Faibussowitsch PetscCall((sf->ops->GetGraph)(sf, nroots, nleaves, ilocal, iremote)); 783b8dee149SJunchao Zhang } else { 78495fce210SBarry Smith if (nroots) *nroots = sf->nroots; 78595fce210SBarry Smith if (nleaves) *nleaves = sf->nleaves; 78695fce210SBarry Smith if (ilocal) *ilocal = sf->mine; 78795fce210SBarry Smith if (iremote) *iremote = sf->remote; 788b8dee149SJunchao Zhang } 78995fce210SBarry Smith PetscFunctionReturn(0); 79095fce210SBarry Smith } 79195fce210SBarry Smith 79229046d53SLisandro Dalcin /*@ 79395fce210SBarry Smith PetscSFGetLeafRange - Get the active leaf ranges 79495fce210SBarry Smith 79595fce210SBarry Smith Not Collective 79695fce210SBarry Smith 7974165533cSJose E. Roman Input Parameter: 79895fce210SBarry Smith . sf - star forest 79995fce210SBarry Smith 8004165533cSJose E. Roman Output Parameters: 801dd5b3ca6SJunchao Zhang + minleaf - minimum active leaf on this process. Return 0 if there are no leaves. 802dd5b3ca6SJunchao Zhang - maxleaf - maximum active leaf on this process. Return -1 if there are no leaves. 80395fce210SBarry Smith 80495fce210SBarry Smith Level: developer 80595fce210SBarry Smith 806cab54364SBarry Smith .seealso: `PetscSFType`, `PetscSFCreate()`, `PetscSFView()`, `PetscSFSetGraph()`, `PetscSFGetGraph()` 80795fce210SBarry Smith @*/ 808d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFGetLeafRange(PetscSF sf, PetscInt *minleaf, PetscInt *maxleaf) 809d71ae5a4SJacob Faibussowitsch { 81095fce210SBarry Smith PetscFunctionBegin; 81195fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 81229046d53SLisandro Dalcin PetscSFCheckGraphSet(sf, 1); 81395fce210SBarry Smith if (minleaf) *minleaf = sf->minleaf; 81495fce210SBarry Smith if (maxleaf) *maxleaf = sf->maxleaf; 81595fce210SBarry Smith PetscFunctionReturn(0); 81695fce210SBarry Smith } 81795fce210SBarry Smith 81895fce210SBarry Smith /*@C 819cab54364SBarry Smith PetscSFViewFromOptions - View a `PetscSF` based on arguments in the options database 820fe2efc57SMark 821cab54364SBarry Smith Collective on A 822fe2efc57SMark 823fe2efc57SMark Input Parameters: 824fe2efc57SMark + A - the star forest 825cab54364SBarry Smith . obj - Optional object that provides the prefix for the option names 826736c3998SJose E. Roman - name - command line option 827fe2efc57SMark 828fe2efc57SMark Level: intermediate 829cab54364SBarry Smith 830db781477SPatrick Sanan .seealso: `PetscSF`, `PetscSFView`, `PetscObjectViewFromOptions()`, `PetscSFCreate()` 831fe2efc57SMark @*/ 832d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFViewFromOptions(PetscSF A, PetscObject obj, const char name[]) 833d71ae5a4SJacob Faibussowitsch { 834fe2efc57SMark PetscFunctionBegin; 835fe2efc57SMark PetscValidHeaderSpecific(A, PETSCSF_CLASSID, 1); 8369566063dSJacob Faibussowitsch PetscCall(PetscObjectViewFromOptions((PetscObject)A, obj, name)); 837fe2efc57SMark PetscFunctionReturn(0); 838fe2efc57SMark } 839fe2efc57SMark 840fe2efc57SMark /*@C 84195fce210SBarry Smith PetscSFView - view a star forest 84295fce210SBarry Smith 84395fce210SBarry Smith Collective 84495fce210SBarry Smith 8454165533cSJose E. Roman Input Parameters: 84695fce210SBarry Smith + sf - star forest 847cab54364SBarry Smith - viewer - viewer to display graph, for example `PETSC_VIEWER_STDOUT_WORLD` 84895fce210SBarry Smith 84995fce210SBarry Smith Level: beginner 85095fce210SBarry Smith 851cab54364SBarry Smith .seealso: `PetscSF`, `PetscViewer`, `PetscSFCreate()`, `PetscSFSetGraph()` 85295fce210SBarry Smith @*/ 853d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFView(PetscSF sf, PetscViewer viewer) 854d71ae5a4SJacob Faibussowitsch { 85595fce210SBarry Smith PetscBool iascii; 85695fce210SBarry Smith PetscViewerFormat format; 85795fce210SBarry Smith 85895fce210SBarry Smith PetscFunctionBegin; 85995fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 8609566063dSJacob Faibussowitsch if (!viewer) PetscCall(PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject)sf), &viewer)); 86195fce210SBarry Smith PetscValidHeaderSpecific(viewer, PETSC_VIEWER_CLASSID, 2); 86295fce210SBarry Smith PetscCheckSameComm(sf, 1, viewer, 2); 8639566063dSJacob Faibussowitsch if (sf->graphset) PetscCall(PetscSFSetUp(sf)); 8649566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)viewer, PETSCVIEWERASCII, &iascii)); 86553dd6d7dSJunchao Zhang if (iascii && viewer->format != PETSC_VIEWER_ASCII_MATLAB) { 86695fce210SBarry Smith PetscMPIInt rank; 86781bfa7aaSJed Brown PetscInt ii, i, j; 86895fce210SBarry Smith 8699566063dSJacob Faibussowitsch PetscCall(PetscObjectPrintClassNamePrefixType((PetscObject)sf, viewer)); 8709566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushTab(viewer)); 871dd5b3ca6SJunchao Zhang if (sf->pattern == PETSCSF_PATTERN_GENERAL) { 87280153354SVaclav Hapla if (!sf->graphset) { 8739566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPrintf(viewer, "PetscSFSetGraph() has not been called yet\n")); 8749566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopTab(viewer)); 87580153354SVaclav Hapla PetscFunctionReturn(0); 87680153354SVaclav Hapla } 8779566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)sf), &rank)); 8789566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPushSynchronized(viewer)); 8799566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Number of roots=%" PetscInt_FMT ", leaves=%" PetscInt_FMT ", remote ranks=%" PetscInt_FMT "\n", rank, sf->nroots, sf->nleaves, sf->nranks)); 88048a46eb9SPierre Jolivet for (i = 0; i < sf->nleaves; i++) PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] %" PetscInt_FMT " <- (%" PetscInt_FMT ",%" PetscInt_FMT ")\n", rank, sf->mine ? sf->mine[i] : i, sf->remote[i].rank, sf->remote[i].index)); 8819566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 8829566063dSJacob Faibussowitsch PetscCall(PetscViewerGetFormat(viewer, &format)); 88395fce210SBarry Smith if (format == PETSC_VIEWER_ASCII_INFO_DETAIL) { 88481bfa7aaSJed Brown PetscMPIInt *tmpranks, *perm; 8859566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(sf->nranks, &tmpranks, sf->nranks, &perm)); 8869566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(tmpranks, sf->ranks, sf->nranks)); 88781bfa7aaSJed Brown for (i = 0; i < sf->nranks; i++) perm[i] = i; 8889566063dSJacob Faibussowitsch PetscCall(PetscSortMPIIntWithArray(sf->nranks, tmpranks, perm)); 8899566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] Roots referenced by my leaves, by rank\n", rank)); 89081bfa7aaSJed Brown for (ii = 0; ii < sf->nranks; ii++) { 89181bfa7aaSJed Brown i = perm[ii]; 8929566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] %d: %" PetscInt_FMT " edges\n", rank, sf->ranks[i], sf->roffset[i + 1] - sf->roffset[i])); 89348a46eb9SPierre Jolivet for (j = sf->roffset[i]; j < sf->roffset[i + 1]; j++) PetscCall(PetscViewerASCIISynchronizedPrintf(viewer, "[%d] %" PetscInt_FMT " <- %" PetscInt_FMT "\n", rank, sf->rmine[j], sf->rremote[j])); 89495fce210SBarry Smith } 8959566063dSJacob Faibussowitsch PetscCall(PetscFree2(tmpranks, perm)); 89695fce210SBarry Smith } 8979566063dSJacob Faibussowitsch PetscCall(PetscViewerFlush(viewer)); 8989566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopSynchronized(viewer)); 899dd5b3ca6SJunchao Zhang } 9009566063dSJacob Faibussowitsch PetscCall(PetscViewerASCIIPopTab(viewer)); 90195fce210SBarry Smith } 902dbbe0bcdSBarry Smith PetscTryTypeMethod(sf, View, viewer); 90395fce210SBarry Smith PetscFunctionReturn(0); 90495fce210SBarry Smith } 90595fce210SBarry Smith 90695fce210SBarry Smith /*@C 907dec1416fSJunchao Zhang PetscSFGetRootRanks - Get root ranks and number of vertices referenced by leaves on this process 90895fce210SBarry Smith 90995fce210SBarry Smith Not Collective 91095fce210SBarry Smith 9114165533cSJose E. Roman Input Parameter: 91295fce210SBarry Smith . sf - star forest 91395fce210SBarry Smith 9144165533cSJose E. Roman Output Parameters: 91595fce210SBarry Smith + nranks - number of ranks referenced by local part 91695fce210SBarry Smith . ranks - array of ranks 91795fce210SBarry Smith . roffset - offset in rmine/rremote for each rank (length nranks+1) 91895fce210SBarry Smith . rmine - concatenated array holding local indices referencing each remote rank 91995fce210SBarry Smith - rremote - concatenated array holding remote indices referenced for each remote rank 92095fce210SBarry Smith 92195fce210SBarry Smith Level: developer 92295fce210SBarry Smith 923cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFGetLeafRanks()` 92495fce210SBarry Smith @*/ 925d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFGetRootRanks(PetscSF sf, PetscInt *nranks, const PetscMPIInt **ranks, const PetscInt **roffset, const PetscInt **rmine, const PetscInt **rremote) 926d71ae5a4SJacob Faibussowitsch { 92795fce210SBarry Smith PetscFunctionBegin; 92895fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 92928b400f6SJacob Faibussowitsch PetscCheck(sf->setupcalled, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Must call PetscSFSetUp() before obtaining ranks"); 930dec1416fSJunchao Zhang if (sf->ops->GetRootRanks) { 9319566063dSJacob Faibussowitsch PetscCall((sf->ops->GetRootRanks)(sf, nranks, ranks, roffset, rmine, rremote)); 932dec1416fSJunchao Zhang } else { 933dec1416fSJunchao Zhang /* The generic implementation */ 93495fce210SBarry Smith if (nranks) *nranks = sf->nranks; 93595fce210SBarry Smith if (ranks) *ranks = sf->ranks; 93695fce210SBarry Smith if (roffset) *roffset = sf->roffset; 93795fce210SBarry Smith if (rmine) *rmine = sf->rmine; 93895fce210SBarry Smith if (rremote) *rremote = sf->rremote; 939dec1416fSJunchao Zhang } 94095fce210SBarry Smith PetscFunctionReturn(0); 94195fce210SBarry Smith } 94295fce210SBarry Smith 9438750ddebSJunchao Zhang /*@C 9448750ddebSJunchao Zhang PetscSFGetLeafRanks - Get leaf ranks referencing roots on this process 9458750ddebSJunchao Zhang 9468750ddebSJunchao Zhang Not Collective 9478750ddebSJunchao Zhang 9484165533cSJose E. Roman Input Parameter: 9498750ddebSJunchao Zhang . sf - star forest 9508750ddebSJunchao Zhang 9514165533cSJose E. Roman Output Parameters: 9528750ddebSJunchao Zhang + niranks - number of leaf ranks referencing roots on this process 9538750ddebSJunchao Zhang . iranks - array of ranks 9548750ddebSJunchao Zhang . ioffset - offset in irootloc for each rank (length niranks+1) 9558750ddebSJunchao Zhang - irootloc - concatenated array holding local indices of roots referenced by each leaf rank 9568750ddebSJunchao Zhang 9578750ddebSJunchao Zhang Level: developer 9588750ddebSJunchao Zhang 959cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFGetRootRanks()` 9608750ddebSJunchao Zhang @*/ 961d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFGetLeafRanks(PetscSF sf, PetscInt *niranks, const PetscMPIInt **iranks, const PetscInt **ioffset, const PetscInt **irootloc) 962d71ae5a4SJacob Faibussowitsch { 9638750ddebSJunchao Zhang PetscFunctionBegin; 9648750ddebSJunchao Zhang PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 96528b400f6SJacob Faibussowitsch PetscCheck(sf->setupcalled, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Must call PetscSFSetUp() before obtaining ranks"); 9668750ddebSJunchao Zhang if (sf->ops->GetLeafRanks) { 9679566063dSJacob Faibussowitsch PetscCall((sf->ops->GetLeafRanks)(sf, niranks, iranks, ioffset, irootloc)); 9688750ddebSJunchao Zhang } else { 9698750ddebSJunchao Zhang PetscSFType type; 9709566063dSJacob Faibussowitsch PetscCall(PetscSFGetType(sf, &type)); 97198921bdaSJacob Faibussowitsch SETERRQ(PETSC_COMM_SELF, PETSC_ERR_SUP, "PetscSFGetLeafRanks() is not supported on this StarForest type: %s", type); 9728750ddebSJunchao Zhang } 9738750ddebSJunchao Zhang PetscFunctionReturn(0); 9748750ddebSJunchao Zhang } 9758750ddebSJunchao Zhang 976d71ae5a4SJacob Faibussowitsch static PetscBool InList(PetscMPIInt needle, PetscMPIInt n, const PetscMPIInt *list) 977d71ae5a4SJacob Faibussowitsch { 978b5a8e515SJed Brown PetscInt i; 979b5a8e515SJed Brown for (i = 0; i < n; i++) { 980b5a8e515SJed Brown if (needle == list[i]) return PETSC_TRUE; 981b5a8e515SJed Brown } 982b5a8e515SJed Brown return PETSC_FALSE; 983b5a8e515SJed Brown } 984b5a8e515SJed Brown 98595fce210SBarry Smith /*@C 986cab54364SBarry Smith PetscSFSetUpRanks - Set up data structures associated with ranks; this is for internal use by `PetscSF` implementations. 98721c688dcSJed Brown 98821c688dcSJed Brown Collective 98921c688dcSJed Brown 9904165533cSJose E. Roman Input Parameters: 991cab54364SBarry Smith + sf - `PetscSF` to set up; `PetscSFSetGraph()` must have been called 992cab54364SBarry Smith - dgroup - `MPI_Group` of ranks to be distinguished (e.g., for self or shared memory exchange) 99321c688dcSJed Brown 99421c688dcSJed Brown Level: developer 99521c688dcSJed Brown 996cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFGetRootRanks()` 99721c688dcSJed Brown @*/ 998d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFSetUpRanks(PetscSF sf, MPI_Group dgroup) 999d71ae5a4SJacob Faibussowitsch { 1000*eec179cfSJacob Faibussowitsch PetscHMapI table; 1001*eec179cfSJacob Faibussowitsch PetscHashIter pos; 1002b5a8e515SJed Brown PetscMPIInt size, groupsize, *groupranks; 1003247e8311SStefano Zampini PetscInt *rcount, *ranks; 1004247e8311SStefano Zampini PetscInt i, irank = -1, orank = -1; 100521c688dcSJed Brown 100621c688dcSJed Brown PetscFunctionBegin; 100721c688dcSJed Brown PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 100829046d53SLisandro Dalcin PetscSFCheckGraphSet(sf, 1); 10099566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_size(PetscObjectComm((PetscObject)sf), &size)); 1010*eec179cfSJacob Faibussowitsch PetscCall(PetscHMapICreateWithSize(10, &table)); 101121c688dcSJed Brown for (i = 0; i < sf->nleaves; i++) { 101221c688dcSJed Brown /* Log 1-based rank */ 1013*eec179cfSJacob Faibussowitsch PetscCall(PetscHMapISetWithMode(table, sf->remote[i].rank + 1, 1, ADD_VALUES)); 101421c688dcSJed Brown } 1015*eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIGetSize(table, &sf->nranks)); 10169566063dSJacob Faibussowitsch PetscCall(PetscMalloc4(sf->nranks, &sf->ranks, sf->nranks + 1, &sf->roffset, sf->nleaves, &sf->rmine, sf->nleaves, &sf->rremote)); 10179566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(sf->nranks, &rcount, sf->nranks, &ranks)); 1018*eec179cfSJacob Faibussowitsch PetscHashIterBegin(table, pos); 101921c688dcSJed Brown for (i = 0; i < sf->nranks; i++) { 1020*eec179cfSJacob Faibussowitsch PetscHashIterGetKey(table, pos, ranks[i]); 1021*eec179cfSJacob Faibussowitsch PetscHashIterGetVal(table, pos, rcount[i]); 1022*eec179cfSJacob Faibussowitsch PetscHashIterNext(table, pos); 102321c688dcSJed Brown ranks[i]--; /* Convert back to 0-based */ 102421c688dcSJed Brown } 1025*eec179cfSJacob Faibussowitsch PetscCall(PetscHMapIDestroy(&table)); 1026b5a8e515SJed Brown 1027b5a8e515SJed Brown /* We expect that dgroup is reliably "small" while nranks could be large */ 1028b5a8e515SJed Brown { 10297fb8a5e4SKarl Rupp MPI_Group group = MPI_GROUP_NULL; 1030b5a8e515SJed Brown PetscMPIInt *dgroupranks; 10319566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_group(PetscObjectComm((PetscObject)sf), &group)); 10329566063dSJacob Faibussowitsch PetscCallMPI(MPI_Group_size(dgroup, &groupsize)); 10339566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(groupsize, &dgroupranks)); 10349566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(groupsize, &groupranks)); 1035b5a8e515SJed Brown for (i = 0; i < groupsize; i++) dgroupranks[i] = i; 10369566063dSJacob Faibussowitsch if (groupsize) PetscCallMPI(MPI_Group_translate_ranks(dgroup, groupsize, dgroupranks, group, groupranks)); 10379566063dSJacob Faibussowitsch PetscCallMPI(MPI_Group_free(&group)); 10389566063dSJacob Faibussowitsch PetscCall(PetscFree(dgroupranks)); 1039b5a8e515SJed Brown } 1040b5a8e515SJed Brown 1041b5a8e515SJed Brown /* Partition ranks[] into distinguished (first sf->ndranks) followed by non-distinguished */ 1042b5a8e515SJed Brown for (sf->ndranks = 0, i = sf->nranks; sf->ndranks < i;) { 1043b5a8e515SJed Brown for (i--; sf->ndranks < i; i--) { /* Scan i backward looking for distinguished rank */ 1044b5a8e515SJed Brown if (InList(ranks[i], groupsize, groupranks)) break; 1045b5a8e515SJed Brown } 1046b5a8e515SJed Brown for (; sf->ndranks <= i; sf->ndranks++) { /* Scan sf->ndranks forward looking for non-distinguished rank */ 1047b5a8e515SJed Brown if (!InList(ranks[sf->ndranks], groupsize, groupranks)) break; 1048b5a8e515SJed Brown } 1049b5a8e515SJed Brown if (sf->ndranks < i) { /* Swap ranks[sf->ndranks] with ranks[i] */ 1050b5a8e515SJed Brown PetscInt tmprank, tmpcount; 1051247e8311SStefano Zampini 1052b5a8e515SJed Brown tmprank = ranks[i]; 1053b5a8e515SJed Brown tmpcount = rcount[i]; 1054b5a8e515SJed Brown ranks[i] = ranks[sf->ndranks]; 1055b5a8e515SJed Brown rcount[i] = rcount[sf->ndranks]; 1056b5a8e515SJed Brown ranks[sf->ndranks] = tmprank; 1057b5a8e515SJed Brown rcount[sf->ndranks] = tmpcount; 1058b5a8e515SJed Brown sf->ndranks++; 1059b5a8e515SJed Brown } 1060b5a8e515SJed Brown } 10619566063dSJacob Faibussowitsch PetscCall(PetscFree(groupranks)); 10629566063dSJacob Faibussowitsch PetscCall(PetscSortIntWithArray(sf->ndranks, ranks, rcount)); 10639566063dSJacob Faibussowitsch PetscCall(PetscSortIntWithArray(sf->nranks - sf->ndranks, ranks + sf->ndranks, rcount + sf->ndranks)); 106421c688dcSJed Brown sf->roffset[0] = 0; 106521c688dcSJed Brown for (i = 0; i < sf->nranks; i++) { 10669566063dSJacob Faibussowitsch PetscCall(PetscMPIIntCast(ranks[i], sf->ranks + i)); 106721c688dcSJed Brown sf->roffset[i + 1] = sf->roffset[i] + rcount[i]; 106821c688dcSJed Brown rcount[i] = 0; 106921c688dcSJed Brown } 1070247e8311SStefano Zampini for (i = 0, irank = -1, orank = -1; i < sf->nleaves; i++) { 1071247e8311SStefano Zampini /* short circuit */ 1072247e8311SStefano Zampini if (orank != sf->remote[i].rank) { 107321c688dcSJed Brown /* Search for index of iremote[i].rank in sf->ranks */ 10749566063dSJacob Faibussowitsch PetscCall(PetscFindMPIInt(sf->remote[i].rank, sf->ndranks, sf->ranks, &irank)); 1075b5a8e515SJed Brown if (irank < 0) { 10769566063dSJacob Faibussowitsch PetscCall(PetscFindMPIInt(sf->remote[i].rank, sf->nranks - sf->ndranks, sf->ranks + sf->ndranks, &irank)); 1077b5a8e515SJed Brown if (irank >= 0) irank += sf->ndranks; 107821c688dcSJed Brown } 1079247e8311SStefano Zampini orank = sf->remote[i].rank; 1080247e8311SStefano Zampini } 108108401ef6SPierre Jolivet PetscCheck(irank >= 0, PETSC_COMM_SELF, PETSC_ERR_PLIB, "Could not find rank %" PetscInt_FMT " in array", sf->remote[i].rank); 108221c688dcSJed Brown sf->rmine[sf->roffset[irank] + rcount[irank]] = sf->mine ? sf->mine[i] : i; 108321c688dcSJed Brown sf->rremote[sf->roffset[irank] + rcount[irank]] = sf->remote[i].index; 108421c688dcSJed Brown rcount[irank]++; 108521c688dcSJed Brown } 10869566063dSJacob Faibussowitsch PetscCall(PetscFree2(rcount, ranks)); 108721c688dcSJed Brown PetscFunctionReturn(0); 108821c688dcSJed Brown } 108921c688dcSJed Brown 109021c688dcSJed Brown /*@C 109195fce210SBarry Smith PetscSFGetGroups - gets incoming and outgoing process groups 109295fce210SBarry Smith 109395fce210SBarry Smith Collective 109495fce210SBarry Smith 10954165533cSJose E. Roman Input Parameter: 109695fce210SBarry Smith . sf - star forest 109795fce210SBarry Smith 10984165533cSJose E. Roman Output Parameters: 109995fce210SBarry Smith + incoming - group of origin processes for incoming edges (leaves that reference my roots) 110095fce210SBarry Smith - outgoing - group of destination processes for outgoing edges (roots that I reference) 110195fce210SBarry Smith 110295fce210SBarry Smith Level: developer 110395fce210SBarry Smith 1104cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFGetWindow()`, `PetscSFRestoreWindow()` 110595fce210SBarry Smith @*/ 1106d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFGetGroups(PetscSF sf, MPI_Group *incoming, MPI_Group *outgoing) 1107d71ae5a4SJacob Faibussowitsch { 11087fb8a5e4SKarl Rupp MPI_Group group = MPI_GROUP_NULL; 110995fce210SBarry Smith 111095fce210SBarry Smith PetscFunctionBegin; 111108401ef6SPierre Jolivet PetscCheck(sf->nranks >= 0, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Must call PetscSFSetUpRanks() before obtaining groups"); 111295fce210SBarry Smith if (sf->ingroup == MPI_GROUP_NULL) { 111395fce210SBarry Smith PetscInt i; 111495fce210SBarry Smith const PetscInt *indegree; 111595fce210SBarry Smith PetscMPIInt rank, *outranks, *inranks; 111695fce210SBarry Smith PetscSFNode *remote; 111795fce210SBarry Smith PetscSF bgcount; 111895fce210SBarry Smith 111995fce210SBarry Smith /* Compute the number of incoming ranks */ 11209566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(sf->nranks, &remote)); 112195fce210SBarry Smith for (i = 0; i < sf->nranks; i++) { 112295fce210SBarry Smith remote[i].rank = sf->ranks[i]; 112395fce210SBarry Smith remote[i].index = 0; 112495fce210SBarry Smith } 11259566063dSJacob Faibussowitsch PetscCall(PetscSFDuplicate(sf, PETSCSF_DUPLICATE_CONFONLY, &bgcount)); 11269566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(bgcount, 1, sf->nranks, NULL, PETSC_COPY_VALUES, remote, PETSC_OWN_POINTER)); 11279566063dSJacob Faibussowitsch PetscCall(PetscSFComputeDegreeBegin(bgcount, &indegree)); 11289566063dSJacob Faibussowitsch PetscCall(PetscSFComputeDegreeEnd(bgcount, &indegree)); 112995fce210SBarry Smith /* Enumerate the incoming ranks */ 11309566063dSJacob Faibussowitsch PetscCall(PetscMalloc2(indegree[0], &inranks, sf->nranks, &outranks)); 11319566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)sf), &rank)); 113295fce210SBarry Smith for (i = 0; i < sf->nranks; i++) outranks[i] = rank; 11339566063dSJacob Faibussowitsch PetscCall(PetscSFGatherBegin(bgcount, MPI_INT, outranks, inranks)); 11349566063dSJacob Faibussowitsch PetscCall(PetscSFGatherEnd(bgcount, MPI_INT, outranks, inranks)); 11359566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_group(PetscObjectComm((PetscObject)sf), &group)); 11369566063dSJacob Faibussowitsch PetscCallMPI(MPI_Group_incl(group, indegree[0], inranks, &sf->ingroup)); 11379566063dSJacob Faibussowitsch PetscCallMPI(MPI_Group_free(&group)); 11389566063dSJacob Faibussowitsch PetscCall(PetscFree2(inranks, outranks)); 11399566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&bgcount)); 114095fce210SBarry Smith } 114195fce210SBarry Smith *incoming = sf->ingroup; 114295fce210SBarry Smith 114395fce210SBarry Smith if (sf->outgroup == MPI_GROUP_NULL) { 11449566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_group(PetscObjectComm((PetscObject)sf), &group)); 11459566063dSJacob Faibussowitsch PetscCallMPI(MPI_Group_incl(group, sf->nranks, sf->ranks, &sf->outgroup)); 11469566063dSJacob Faibussowitsch PetscCallMPI(MPI_Group_free(&group)); 114795fce210SBarry Smith } 114895fce210SBarry Smith *outgoing = sf->outgroup; 114995fce210SBarry Smith PetscFunctionReturn(0); 115095fce210SBarry Smith } 115195fce210SBarry Smith 115229046d53SLisandro Dalcin /*@ 1153cab54364SBarry Smith PetscSFGetMultiSF - gets the inner `PetscSF` implementing gathers and scatters 115495fce210SBarry Smith 115595fce210SBarry Smith Collective 115695fce210SBarry Smith 11574165533cSJose E. Roman Input Parameter: 115895fce210SBarry Smith . sf - star forest that may contain roots with 0 or with more than 1 vertex 115995fce210SBarry Smith 11604165533cSJose E. Roman Output Parameter: 116195fce210SBarry Smith . multi - star forest with split roots, such that each root has degree exactly 1 116295fce210SBarry Smith 116395fce210SBarry Smith Level: developer 116495fce210SBarry Smith 1165cab54364SBarry Smith Note: 1166cab54364SBarry Smith In most cases, users should use `PetscSFGatherBegin()` and `PetscSFScatterBegin()` instead of manipulating multi 116795fce210SBarry Smith directly. Since multi satisfies the stronger condition that each entry in the global space has exactly one incoming 116895fce210SBarry Smith edge, it is a candidate for future optimization that might involve its removal. 116995fce210SBarry Smith 1170cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFSetGraph()`, `PetscSFGatherBegin()`, `PetscSFScatterBegin()`, `PetscSFComputeMultiRootOriginalNumbering()` 117195fce210SBarry Smith @*/ 1172d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFGetMultiSF(PetscSF sf, PetscSF *multi) 1173d71ae5a4SJacob Faibussowitsch { 117495fce210SBarry Smith PetscFunctionBegin; 117595fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 117695fce210SBarry Smith PetscValidPointer(multi, 2); 117795fce210SBarry Smith if (sf->nroots < 0) { /* Graph has not been set yet; why do we need this? */ 11789566063dSJacob Faibussowitsch PetscCall(PetscSFDuplicate(sf, PETSCSF_DUPLICATE_RANKS, &sf->multi)); 117995fce210SBarry Smith *multi = sf->multi; 1180013b3241SStefano Zampini sf->multi->multi = sf->multi; 118195fce210SBarry Smith PetscFunctionReturn(0); 118295fce210SBarry Smith } 118395fce210SBarry Smith if (!sf->multi) { 118495fce210SBarry Smith const PetscInt *indegree; 11859837ea96SMatthew G. Knepley PetscInt i, *inoffset, *outones, *outoffset, maxlocal; 118695fce210SBarry Smith PetscSFNode *remote; 118729046d53SLisandro Dalcin maxlocal = sf->maxleaf + 1; /* TODO: We should use PetscSFGetLeafRange() */ 11889566063dSJacob Faibussowitsch PetscCall(PetscSFComputeDegreeBegin(sf, &indegree)); 11899566063dSJacob Faibussowitsch PetscCall(PetscSFComputeDegreeEnd(sf, &indegree)); 11909566063dSJacob Faibussowitsch PetscCall(PetscMalloc3(sf->nroots + 1, &inoffset, maxlocal, &outones, maxlocal, &outoffset)); 119195fce210SBarry Smith inoffset[0] = 0; 119295fce210SBarry Smith for (i = 0; i < sf->nroots; i++) inoffset[i + 1] = inoffset[i] + indegree[i]; 11939837ea96SMatthew G. Knepley for (i = 0; i < maxlocal; i++) outones[i] = 1; 11949566063dSJacob Faibussowitsch PetscCall(PetscSFFetchAndOpBegin(sf, MPIU_INT, inoffset, outones, outoffset, MPI_SUM)); 11959566063dSJacob Faibussowitsch PetscCall(PetscSFFetchAndOpEnd(sf, MPIU_INT, inoffset, outones, outoffset, MPI_SUM)); 119695fce210SBarry Smith for (i = 0; i < sf->nroots; i++) inoffset[i] -= indegree[i]; /* Undo the increment */ 119776bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { /* Check that the expected number of increments occurred */ 1198ad540459SPierre Jolivet for (i = 0; i < sf->nroots; i++) PetscCheck(inoffset[i] + indegree[i] == inoffset[i + 1], PETSC_COMM_SELF, PETSC_ERR_PLIB, "Incorrect result after PetscSFFetchAndOp"); 119976bd3646SJed Brown } 12009566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(sf->nleaves, &remote)); 120195fce210SBarry Smith for (i = 0; i < sf->nleaves; i++) { 120295fce210SBarry Smith remote[i].rank = sf->remote[i].rank; 120338e7336fSToby Isaac remote[i].index = outoffset[sf->mine ? sf->mine[i] : i]; 120495fce210SBarry Smith } 12059566063dSJacob Faibussowitsch PetscCall(PetscSFDuplicate(sf, PETSCSF_DUPLICATE_RANKS, &sf->multi)); 1206013b3241SStefano Zampini sf->multi->multi = sf->multi; 12079566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf->multi, inoffset[sf->nroots], sf->nleaves, sf->mine, PETSC_COPY_VALUES, remote, PETSC_OWN_POINTER)); 120895fce210SBarry Smith if (sf->rankorder) { /* Sort the ranks */ 120995fce210SBarry Smith PetscMPIInt rank; 121095fce210SBarry Smith PetscInt *inranks, *newoffset, *outranks, *newoutoffset, *tmpoffset, maxdegree; 121195fce210SBarry Smith PetscSFNode *newremote; 12129566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(PetscObjectComm((PetscObject)sf), &rank)); 121395fce210SBarry Smith for (i = 0, maxdegree = 0; i < sf->nroots; i++) maxdegree = PetscMax(maxdegree, indegree[i]); 12149566063dSJacob Faibussowitsch PetscCall(PetscMalloc5(sf->multi->nroots, &inranks, sf->multi->nroots, &newoffset, maxlocal, &outranks, maxlocal, &newoutoffset, maxdegree, &tmpoffset)); 12159837ea96SMatthew G. Knepley for (i = 0; i < maxlocal; i++) outranks[i] = rank; 12169566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sf->multi, MPIU_INT, outranks, inranks, MPI_REPLACE)); 12179566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf->multi, MPIU_INT, outranks, inranks, MPI_REPLACE)); 121895fce210SBarry Smith /* Sort the incoming ranks at each vertex, build the inverse map */ 121995fce210SBarry Smith for (i = 0; i < sf->nroots; i++) { 122095fce210SBarry Smith PetscInt j; 122195fce210SBarry Smith for (j = 0; j < indegree[i]; j++) tmpoffset[j] = j; 12229566063dSJacob Faibussowitsch PetscCall(PetscSortIntWithArray(indegree[i], inranks + inoffset[i], tmpoffset)); 122395fce210SBarry Smith for (j = 0; j < indegree[i]; j++) newoffset[inoffset[i] + tmpoffset[j]] = inoffset[i] + j; 122495fce210SBarry Smith } 12259566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf->multi, MPIU_INT, newoffset, newoutoffset, MPI_REPLACE)); 12269566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf->multi, MPIU_INT, newoffset, newoutoffset, MPI_REPLACE)); 12279566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(sf->nleaves, &newremote)); 122895fce210SBarry Smith for (i = 0; i < sf->nleaves; i++) { 122995fce210SBarry Smith newremote[i].rank = sf->remote[i].rank; 123001365b40SToby Isaac newremote[i].index = newoutoffset[sf->mine ? sf->mine[i] : i]; 123195fce210SBarry Smith } 12329566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(sf->multi, inoffset[sf->nroots], sf->nleaves, sf->mine, PETSC_COPY_VALUES, newremote, PETSC_OWN_POINTER)); 12339566063dSJacob Faibussowitsch PetscCall(PetscFree5(inranks, newoffset, outranks, newoutoffset, tmpoffset)); 123495fce210SBarry Smith } 12359566063dSJacob Faibussowitsch PetscCall(PetscFree3(inoffset, outones, outoffset)); 123695fce210SBarry Smith } 123795fce210SBarry Smith *multi = sf->multi; 123895fce210SBarry Smith PetscFunctionReturn(0); 123995fce210SBarry Smith } 124095fce210SBarry Smith 124195fce210SBarry Smith /*@C 124272502a1fSJunchao Zhang PetscSFCreateEmbeddedRootSF - removes edges from all but the selected roots, does not remap indices 124395fce210SBarry Smith 124495fce210SBarry Smith Collective 124595fce210SBarry Smith 12464165533cSJose E. Roman Input Parameters: 124795fce210SBarry Smith + sf - original star forest 1248ba2a7774SJunchao Zhang . nselected - number of selected roots on this process 1249ba2a7774SJunchao Zhang - selected - indices of the selected roots on this process 125095fce210SBarry Smith 12514165533cSJose E. Roman Output Parameter: 1252cd620004SJunchao Zhang . esf - new star forest 125395fce210SBarry Smith 125495fce210SBarry Smith Level: advanced 125595fce210SBarry Smith 125695fce210SBarry Smith Note: 1257cab54364SBarry Smith To use the new `PetscSF`, it may be necessary to know the indices of the leaves that are still participating. This can 125895fce210SBarry Smith be done by calling PetscSFGetGraph(). 125995fce210SBarry Smith 1260cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFSetGraph()`, `PetscSFGetGraph()` 126195fce210SBarry Smith @*/ 1262d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFCreateEmbeddedRootSF(PetscSF sf, PetscInt nselected, const PetscInt *selected, PetscSF *esf) 1263d71ae5a4SJacob Faibussowitsch { 1264cd620004SJunchao Zhang PetscInt i, j, n, nroots, nleaves, esf_nleaves, *new_ilocal, minleaf, maxleaf, maxlocal; 1265cd620004SJunchao Zhang const PetscInt *ilocal; 1266cd620004SJunchao Zhang signed char *rootdata, *leafdata, *leafmem; 1267ba2a7774SJunchao Zhang const PetscSFNode *iremote; 1268f659e5c7SJunchao Zhang PetscSFNode *new_iremote; 1269f659e5c7SJunchao Zhang MPI_Comm comm; 127095fce210SBarry Smith 127195fce210SBarry Smith PetscFunctionBegin; 127295fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 127329046d53SLisandro Dalcin PetscSFCheckGraphSet(sf, 1); 1274dadcf809SJacob Faibussowitsch if (nselected) PetscValidIntPointer(selected, 3); 1275cd620004SJunchao Zhang PetscValidPointer(esf, 4); 12760511a646SMatthew G. Knepley 12779566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 12789566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(PETSCSF_EmbedSF, sf, 0, 0, 0)); 12799566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)sf, &comm)); 12809566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sf, &nroots, &nleaves, &ilocal, &iremote)); 1281cd620004SJunchao Zhang 128276bd3646SJed Brown if (PetscDefined(USE_DEBUG)) { /* Error out if selected[] has dups or out of range indices */ 1283cd620004SJunchao Zhang PetscBool dups; 12849566063dSJacob Faibussowitsch PetscCall(PetscCheckDupsInt(nselected, selected, &dups)); 128528b400f6SJacob Faibussowitsch PetscCheck(!dups, comm, PETSC_ERR_ARG_WRONG, "selected[] has dups"); 12869371c9d4SSatish Balay for (i = 0; i < nselected; i++) PetscCheck(selected[i] >= 0 && selected[i] < nroots, comm, PETSC_ERR_ARG_OUTOFRANGE, "selected root indice %" PetscInt_FMT " is out of [0,%" PetscInt_FMT ")", selected[i], nroots); 1287cd620004SJunchao Zhang } 1288f659e5c7SJunchao Zhang 1289dbbe0bcdSBarry Smith if (sf->ops->CreateEmbeddedRootSF) PetscUseTypeMethod(sf, CreateEmbeddedRootSF, nselected, selected, esf); 1290dbbe0bcdSBarry Smith else { 1291cd620004SJunchao Zhang /* A generic version of creating embedded sf */ 12929566063dSJacob Faibussowitsch PetscCall(PetscSFGetLeafRange(sf, &minleaf, &maxleaf)); 1293cd620004SJunchao Zhang maxlocal = maxleaf - minleaf + 1; 12949566063dSJacob Faibussowitsch PetscCall(PetscCalloc2(nroots, &rootdata, maxlocal, &leafmem)); 1295cd620004SJunchao Zhang leafdata = leafmem - minleaf; 1296cd620004SJunchao Zhang /* Tag selected roots and bcast to leaves */ 1297cd620004SJunchao Zhang for (i = 0; i < nselected; i++) rootdata[selected[i]] = 1; 12989566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sf, MPI_SIGNED_CHAR, rootdata, leafdata, MPI_REPLACE)); 12999566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sf, MPI_SIGNED_CHAR, rootdata, leafdata, MPI_REPLACE)); 1300ba2a7774SJunchao Zhang 1301cd620004SJunchao Zhang /* Build esf with leaves that are still connected */ 1302cd620004SJunchao Zhang esf_nleaves = 0; 1303cd620004SJunchao Zhang for (i = 0; i < nleaves; i++) { 1304cd620004SJunchao Zhang j = ilocal ? ilocal[i] : i; 1305cd620004SJunchao Zhang /* esf_nleaves += leafdata[j] should work in theory, but failed with SFWindow bugs 1306cd620004SJunchao Zhang with PetscSFBcast. See https://gitlab.com/petsc/petsc/issues/555 1307cd620004SJunchao Zhang */ 1308cd620004SJunchao Zhang esf_nleaves += (leafdata[j] ? 1 : 0); 1309cd620004SJunchao Zhang } 13109566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(esf_nleaves, &new_ilocal)); 13119566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(esf_nleaves, &new_iremote)); 1312cd620004SJunchao Zhang for (i = n = 0; i < nleaves; i++) { 1313cd620004SJunchao Zhang j = ilocal ? ilocal[i] : i; 1314cd620004SJunchao Zhang if (leafdata[j]) { 1315cd620004SJunchao Zhang new_ilocal[n] = j; 1316cd620004SJunchao Zhang new_iremote[n].rank = iremote[i].rank; 1317cd620004SJunchao Zhang new_iremote[n].index = iremote[i].index; 1318fc1ede2bSMatthew G. Knepley ++n; 131995fce210SBarry Smith } 132095fce210SBarry Smith } 13219566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, esf)); 13229566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(*esf)); 13239566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(*esf, nroots, esf_nleaves, new_ilocal, PETSC_OWN_POINTER, new_iremote, PETSC_OWN_POINTER)); 13249566063dSJacob Faibussowitsch PetscCall(PetscFree2(rootdata, leafmem)); 1325f659e5c7SJunchao Zhang } 13269566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(PETSCSF_EmbedSF, sf, 0, 0, 0)); 132795fce210SBarry Smith PetscFunctionReturn(0); 132895fce210SBarry Smith } 132995fce210SBarry Smith 13302f5fb4c2SMatthew G. Knepley /*@C 13312f5fb4c2SMatthew G. Knepley PetscSFCreateEmbeddedLeafSF - removes edges from all but the selected leaves, does not remap indices 13322f5fb4c2SMatthew G. Knepley 13332f5fb4c2SMatthew G. Knepley Collective 13342f5fb4c2SMatthew G. Knepley 13354165533cSJose E. Roman Input Parameters: 13362f5fb4c2SMatthew G. Knepley + sf - original star forest 1337f659e5c7SJunchao Zhang . nselected - number of selected leaves on this process 1338f659e5c7SJunchao Zhang - selected - indices of the selected leaves on this process 13392f5fb4c2SMatthew G. Knepley 13404165533cSJose E. Roman Output Parameter: 13412f5fb4c2SMatthew G. Knepley . newsf - new star forest 13422f5fb4c2SMatthew G. Knepley 13432f5fb4c2SMatthew G. Knepley Level: advanced 13442f5fb4c2SMatthew G. Knepley 1345cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFCreateEmbeddedRootSF()`, `PetscSFSetGraph()`, `PetscSFGetGraph()` 13462f5fb4c2SMatthew G. Knepley @*/ 1347d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFCreateEmbeddedLeafSF(PetscSF sf, PetscInt nselected, const PetscInt *selected, PetscSF *newsf) 1348d71ae5a4SJacob Faibussowitsch { 1349f659e5c7SJunchao Zhang const PetscSFNode *iremote; 1350f659e5c7SJunchao Zhang PetscSFNode *new_iremote; 1351f659e5c7SJunchao Zhang const PetscInt *ilocal; 1352f659e5c7SJunchao Zhang PetscInt i, nroots, *leaves, *new_ilocal; 1353f659e5c7SJunchao Zhang MPI_Comm comm; 13542f5fb4c2SMatthew G. Knepley 13552f5fb4c2SMatthew G. Knepley PetscFunctionBegin; 13562f5fb4c2SMatthew G. Knepley PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 135729046d53SLisandro Dalcin PetscSFCheckGraphSet(sf, 1); 1358dadcf809SJacob Faibussowitsch if (nselected) PetscValidIntPointer(selected, 3); 13592f5fb4c2SMatthew G. Knepley PetscValidPointer(newsf, 4); 13602f5fb4c2SMatthew G. Knepley 1361f659e5c7SJunchao Zhang /* Uniq selected[] and put results in leaves[] */ 13629566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)sf, &comm)); 13639566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nselected, &leaves)); 13649566063dSJacob Faibussowitsch PetscCall(PetscArraycpy(leaves, selected, nselected)); 13659566063dSJacob Faibussowitsch PetscCall(PetscSortedRemoveDupsInt(&nselected, leaves)); 136608401ef6SPierre Jolivet PetscCheck(!nselected || !(leaves[0] < 0 || leaves[nselected - 1] >= sf->nleaves), comm, PETSC_ERR_ARG_OUTOFRANGE, "Min/Max leaf indices %" PetscInt_FMT "/%" PetscInt_FMT " are not in [0,%" PetscInt_FMT ")", leaves[0], leaves[nselected - 1], sf->nleaves); 1367f659e5c7SJunchao Zhang 1368f659e5c7SJunchao Zhang /* Optimize the routine only when sf is setup and hence we can reuse sf's communication pattern */ 1369dbbe0bcdSBarry Smith if (sf->setupcalled && sf->ops->CreateEmbeddedLeafSF) PetscUseTypeMethod(sf, CreateEmbeddedLeafSF, nselected, leaves, newsf); 1370dbbe0bcdSBarry Smith else { 13719566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sf, &nroots, NULL, &ilocal, &iremote)); 13729566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nselected, &new_ilocal)); 13739566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nselected, &new_iremote)); 1374f659e5c7SJunchao Zhang for (i = 0; i < nselected; ++i) { 1375f659e5c7SJunchao Zhang const PetscInt l = leaves[i]; 1376f659e5c7SJunchao Zhang new_ilocal[i] = ilocal ? ilocal[l] : l; 1377f659e5c7SJunchao Zhang new_iremote[i].rank = iremote[l].rank; 1378f659e5c7SJunchao Zhang new_iremote[i].index = iremote[l].index; 13792f5fb4c2SMatthew G. Knepley } 13809566063dSJacob Faibussowitsch PetscCall(PetscSFDuplicate(sf, PETSCSF_DUPLICATE_CONFONLY, newsf)); 13819566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(*newsf, nroots, nselected, new_ilocal, PETSC_OWN_POINTER, new_iremote, PETSC_OWN_POINTER)); 1382f659e5c7SJunchao Zhang } 13839566063dSJacob Faibussowitsch PetscCall(PetscFree(leaves)); 13842f5fb4c2SMatthew G. Knepley PetscFunctionReturn(0); 13852f5fb4c2SMatthew G. Knepley } 13862f5fb4c2SMatthew G. Knepley 138795fce210SBarry Smith /*@C 1388cab54364SBarry Smith PetscSFBcastBegin - begin pointwise broadcast with root value being reduced to leaf value, to be concluded with call to `PetscSFBcastEnd()` 13893482bfa8SJunchao Zhang 1390cab54364SBarry Smith Collective on sf 13913482bfa8SJunchao Zhang 13924165533cSJose E. Roman Input Parameters: 13933482bfa8SJunchao Zhang + sf - star forest on which to communicate 13943482bfa8SJunchao Zhang . unit - data type associated with each node 13953482bfa8SJunchao Zhang . rootdata - buffer to broadcast 13963482bfa8SJunchao Zhang - op - operation to use for reduction 13973482bfa8SJunchao Zhang 13984165533cSJose E. Roman Output Parameter: 13993482bfa8SJunchao Zhang . leafdata - buffer to be reduced with values from each leaf's respective root 14003482bfa8SJunchao Zhang 14013482bfa8SJunchao Zhang Level: intermediate 14023482bfa8SJunchao Zhang 1403d0295fc0SJunchao Zhang Notes: 1404d0295fc0SJunchao Zhang When petsc is configured with device support, it will use its own mechanism to figure out whether the given data pointers 1405d0295fc0SJunchao Zhang are host pointers or device pointers, which may incur a noticable cost. If you already knew the info, you should 1406cab54364SBarry Smith use `PetscSFBcastWithMemTypeBegin()` instead. 1407cab54364SBarry Smith 1408cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFBcastEnd()`, `PetscSFBcastWithMemTypeBegin()` 14093482bfa8SJunchao Zhang @*/ 1410d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFBcastBegin(PetscSF sf, MPI_Datatype unit, const void *rootdata, void *leafdata, MPI_Op op) 1411d71ae5a4SJacob Faibussowitsch { 1412eb02082bSJunchao Zhang PetscMemType rootmtype, leafmtype; 14133482bfa8SJunchao Zhang 14143482bfa8SJunchao Zhang PetscFunctionBegin; 14153482bfa8SJunchao Zhang PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 14169566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 14179566063dSJacob Faibussowitsch if (!sf->vscat.logging) PetscCall(PetscLogEventBegin(PETSCSF_BcastBegin, sf, 0, 0, 0)); 14189566063dSJacob Faibussowitsch PetscCall(PetscGetMemType(rootdata, &rootmtype)); 14199566063dSJacob Faibussowitsch PetscCall(PetscGetMemType(leafdata, &leafmtype)); 1420dbbe0bcdSBarry Smith PetscUseTypeMethod(sf, BcastBegin, unit, rootmtype, rootdata, leafmtype, leafdata, op); 14219566063dSJacob Faibussowitsch if (!sf->vscat.logging) PetscCall(PetscLogEventEnd(PETSCSF_BcastBegin, sf, 0, 0, 0)); 14223482bfa8SJunchao Zhang PetscFunctionReturn(0); 14233482bfa8SJunchao Zhang } 14243482bfa8SJunchao Zhang 14253482bfa8SJunchao Zhang /*@C 1426cab54364SBarry Smith PetscSFBcastWithMemTypeBegin - begin pointwise broadcast with root value being reduced to leaf value with explicit memory types, to be concluded with call to `PetscSFBcastEnd()` 1427d0295fc0SJunchao Zhang 1428cab54364SBarry Smith Collective on sf 1429d0295fc0SJunchao Zhang 14304165533cSJose E. Roman Input Parameters: 1431d0295fc0SJunchao Zhang + sf - star forest on which to communicate 1432d0295fc0SJunchao Zhang . unit - data type associated with each node 1433d0295fc0SJunchao Zhang . rootmtype - memory type of rootdata 1434d0295fc0SJunchao Zhang . rootdata - buffer to broadcast 1435d0295fc0SJunchao Zhang . leafmtype - memory type of leafdata 1436d0295fc0SJunchao Zhang - op - operation to use for reduction 1437d0295fc0SJunchao Zhang 14384165533cSJose E. Roman Output Parameter: 1439d0295fc0SJunchao Zhang . leafdata - buffer to be reduced with values from each leaf's respective root 1440d0295fc0SJunchao Zhang 1441d0295fc0SJunchao Zhang Level: intermediate 1442d0295fc0SJunchao Zhang 1443cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFBcastEnd()`, `PetscSFBcastBegin()` 1444d0295fc0SJunchao Zhang @*/ 1445d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFBcastWithMemTypeBegin(PetscSF sf, MPI_Datatype unit, PetscMemType rootmtype, const void *rootdata, PetscMemType leafmtype, void *leafdata, MPI_Op op) 1446d71ae5a4SJacob Faibussowitsch { 1447d0295fc0SJunchao Zhang PetscFunctionBegin; 1448d0295fc0SJunchao Zhang PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 14499566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 14509566063dSJacob Faibussowitsch if (!sf->vscat.logging) PetscCall(PetscLogEventBegin(PETSCSF_BcastBegin, sf, 0, 0, 0)); 1451dbbe0bcdSBarry Smith PetscUseTypeMethod(sf, BcastBegin, unit, rootmtype, rootdata, leafmtype, leafdata, op); 14529566063dSJacob Faibussowitsch if (!sf->vscat.logging) PetscCall(PetscLogEventEnd(PETSCSF_BcastBegin, sf, 0, 0, 0)); 1453d0295fc0SJunchao Zhang PetscFunctionReturn(0); 1454d0295fc0SJunchao Zhang } 1455d0295fc0SJunchao Zhang 1456d0295fc0SJunchao Zhang /*@C 1457cab54364SBarry Smith PetscSFBcastEnd - end a broadcast & reduce operation started with `PetscSFBcastBegin()` 14583482bfa8SJunchao Zhang 14593482bfa8SJunchao Zhang Collective 14603482bfa8SJunchao Zhang 14614165533cSJose E. Roman Input Parameters: 14623482bfa8SJunchao Zhang + sf - star forest 14633482bfa8SJunchao Zhang . unit - data type 14643482bfa8SJunchao Zhang . rootdata - buffer to broadcast 14653482bfa8SJunchao Zhang - op - operation to use for reduction 14663482bfa8SJunchao Zhang 14674165533cSJose E. Roman Output Parameter: 14683482bfa8SJunchao Zhang . leafdata - buffer to be reduced with values from each leaf's respective root 14693482bfa8SJunchao Zhang 14703482bfa8SJunchao Zhang Level: intermediate 14713482bfa8SJunchao Zhang 1472cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFSetGraph()`, `PetscSFReduceEnd()` 14733482bfa8SJunchao Zhang @*/ 1474d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFBcastEnd(PetscSF sf, MPI_Datatype unit, const void *rootdata, void *leafdata, MPI_Op op) 1475d71ae5a4SJacob Faibussowitsch { 14763482bfa8SJunchao Zhang PetscFunctionBegin; 14773482bfa8SJunchao Zhang PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 14789566063dSJacob Faibussowitsch if (!sf->vscat.logging) PetscCall(PetscLogEventBegin(PETSCSF_BcastEnd, sf, 0, 0, 0)); 1479dbbe0bcdSBarry Smith PetscUseTypeMethod(sf, BcastEnd, unit, rootdata, leafdata, op); 14809566063dSJacob Faibussowitsch if (!sf->vscat.logging) PetscCall(PetscLogEventEnd(PETSCSF_BcastEnd, sf, 0, 0, 0)); 14813482bfa8SJunchao Zhang PetscFunctionReturn(0); 14823482bfa8SJunchao Zhang } 14833482bfa8SJunchao Zhang 14843482bfa8SJunchao Zhang /*@C 1485cab54364SBarry Smith PetscSFReduceBegin - begin reduction of leafdata into rootdata, to be completed with call to `PetscSFReduceEnd()` 148695fce210SBarry Smith 148795fce210SBarry Smith Collective 148895fce210SBarry Smith 14894165533cSJose E. Roman Input Parameters: 149095fce210SBarry Smith + sf - star forest 149195fce210SBarry Smith . unit - data type 149295fce210SBarry Smith . leafdata - values to reduce 149395fce210SBarry Smith - op - reduction operation 149495fce210SBarry Smith 14954165533cSJose E. Roman Output Parameter: 149695fce210SBarry Smith . rootdata - result of reduction of values from all leaves of each root 149795fce210SBarry Smith 149895fce210SBarry Smith Level: intermediate 149995fce210SBarry Smith 1500d0295fc0SJunchao Zhang Notes: 1501d0295fc0SJunchao Zhang When petsc is configured with device support, it will use its own mechanism to figure out whether the given data pointers 1502d0295fc0SJunchao Zhang are host pointers or device pointers, which may incur a noticable cost. If you already knew the info, you should 1503cab54364SBarry Smith use `PetscSFReduceWithMemTypeBegin()` instead. 1504d0295fc0SJunchao Zhang 1505cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFBcastBegin()`, `PetscSFReduceWithMemTypeBegin()` 150695fce210SBarry Smith @*/ 1507d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFReduceBegin(PetscSF sf, MPI_Datatype unit, const void *leafdata, void *rootdata, MPI_Op op) 1508d71ae5a4SJacob Faibussowitsch { 1509eb02082bSJunchao Zhang PetscMemType rootmtype, leafmtype; 151095fce210SBarry Smith 151195fce210SBarry Smith PetscFunctionBegin; 151295fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 15139566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 15149566063dSJacob Faibussowitsch if (!sf->vscat.logging) PetscCall(PetscLogEventBegin(PETSCSF_ReduceBegin, sf, 0, 0, 0)); 15159566063dSJacob Faibussowitsch PetscCall(PetscGetMemType(rootdata, &rootmtype)); 15169566063dSJacob Faibussowitsch PetscCall(PetscGetMemType(leafdata, &leafmtype)); 15179566063dSJacob Faibussowitsch PetscCall((sf->ops->ReduceBegin)(sf, unit, leafmtype, leafdata, rootmtype, rootdata, op)); 15189566063dSJacob Faibussowitsch if (!sf->vscat.logging) PetscCall(PetscLogEventEnd(PETSCSF_ReduceBegin, sf, 0, 0, 0)); 151995fce210SBarry Smith PetscFunctionReturn(0); 152095fce210SBarry Smith } 152195fce210SBarry Smith 152295fce210SBarry Smith /*@C 1523cab54364SBarry Smith PetscSFReduceWithMemTypeBegin - begin reduction of leafdata into rootdata with explicit memory types, to be completed with call to `PetscSFReduceEnd()` 1524d0295fc0SJunchao Zhang 1525d0295fc0SJunchao Zhang Collective 1526d0295fc0SJunchao Zhang 15274165533cSJose E. Roman Input Parameters: 1528d0295fc0SJunchao Zhang + sf - star forest 1529d0295fc0SJunchao Zhang . unit - data type 1530d0295fc0SJunchao Zhang . leafmtype - memory type of leafdata 1531d0295fc0SJunchao Zhang . leafdata - values to reduce 1532d0295fc0SJunchao Zhang . rootmtype - memory type of rootdata 1533d0295fc0SJunchao Zhang - op - reduction operation 1534d0295fc0SJunchao Zhang 15354165533cSJose E. Roman Output Parameter: 1536d0295fc0SJunchao Zhang . rootdata - result of reduction of values from all leaves of each root 1537d0295fc0SJunchao Zhang 1538d0295fc0SJunchao Zhang Level: intermediate 1539d0295fc0SJunchao Zhang 1540cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFBcastBegin()`, `PetscSFReduceBegin()` 1541d0295fc0SJunchao Zhang @*/ 1542d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFReduceWithMemTypeBegin(PetscSF sf, MPI_Datatype unit, PetscMemType leafmtype, const void *leafdata, PetscMemType rootmtype, void *rootdata, MPI_Op op) 1543d71ae5a4SJacob Faibussowitsch { 1544d0295fc0SJunchao Zhang PetscFunctionBegin; 1545d0295fc0SJunchao Zhang PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 15469566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 15479566063dSJacob Faibussowitsch if (!sf->vscat.logging) PetscCall(PetscLogEventBegin(PETSCSF_ReduceBegin, sf, 0, 0, 0)); 15489566063dSJacob Faibussowitsch PetscCall((sf->ops->ReduceBegin)(sf, unit, leafmtype, leafdata, rootmtype, rootdata, op)); 15499566063dSJacob Faibussowitsch if (!sf->vscat.logging) PetscCall(PetscLogEventEnd(PETSCSF_ReduceBegin, sf, 0, 0, 0)); 1550d0295fc0SJunchao Zhang PetscFunctionReturn(0); 1551d0295fc0SJunchao Zhang } 1552d0295fc0SJunchao Zhang 1553d0295fc0SJunchao Zhang /*@C 1554cab54364SBarry Smith PetscSFReduceEnd - end a reduction operation started with `PetscSFReduceBegin()` 155595fce210SBarry Smith 155695fce210SBarry Smith Collective 155795fce210SBarry Smith 15584165533cSJose E. Roman Input Parameters: 155995fce210SBarry Smith + sf - star forest 156095fce210SBarry Smith . unit - data type 156195fce210SBarry Smith . leafdata - values to reduce 156295fce210SBarry Smith - op - reduction operation 156395fce210SBarry Smith 15644165533cSJose E. Roman Output Parameter: 156595fce210SBarry Smith . rootdata - result of reduction of values from all leaves of each root 156695fce210SBarry Smith 156795fce210SBarry Smith Level: intermediate 156895fce210SBarry Smith 1569cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFSetGraph()`, `PetscSFBcastEnd()` 157095fce210SBarry Smith @*/ 1571d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFReduceEnd(PetscSF sf, MPI_Datatype unit, const void *leafdata, void *rootdata, MPI_Op op) 1572d71ae5a4SJacob Faibussowitsch { 157395fce210SBarry Smith PetscFunctionBegin; 157495fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 15759566063dSJacob Faibussowitsch if (!sf->vscat.logging) PetscCall(PetscLogEventBegin(PETSCSF_ReduceEnd, sf, 0, 0, 0)); 1576dbbe0bcdSBarry Smith PetscUseTypeMethod(sf, ReduceEnd, unit, leafdata, rootdata, op); 15779566063dSJacob Faibussowitsch if (!sf->vscat.logging) PetscCall(PetscLogEventEnd(PETSCSF_ReduceEnd, sf, 0, 0, 0)); 157895fce210SBarry Smith PetscFunctionReturn(0); 157995fce210SBarry Smith } 158095fce210SBarry Smith 158195fce210SBarry Smith /*@C 1582cab54364SBarry Smith PetscSFFetchAndOpBegin - begin operation that fetches values from root and updates atomically by applying operation using my leaf value, 1583cab54364SBarry Smith to be completed with `PetscSFFetchAndOpEnd()` 1584a1729e3fSJunchao Zhang 1585a1729e3fSJunchao Zhang Collective 1586a1729e3fSJunchao Zhang 15874165533cSJose E. Roman Input Parameters: 1588a1729e3fSJunchao Zhang + sf - star forest 1589a1729e3fSJunchao Zhang . unit - data type 1590a1729e3fSJunchao Zhang . leafdata - leaf values to use in reduction 1591a1729e3fSJunchao Zhang - op - operation to use for reduction 1592a1729e3fSJunchao Zhang 15934165533cSJose E. Roman Output Parameters: 1594a1729e3fSJunchao Zhang + rootdata - root values to be updated, input state is seen by first process to perform an update 1595a1729e3fSJunchao Zhang - leafupdate - state at each leaf's respective root immediately prior to my atomic update 1596a1729e3fSJunchao Zhang 1597a1729e3fSJunchao Zhang Level: advanced 1598a1729e3fSJunchao Zhang 1599a1729e3fSJunchao Zhang Note: 1600a1729e3fSJunchao Zhang The update is only atomic at the granularity provided by the hardware. Different roots referenced by the same process 1601a1729e3fSJunchao Zhang might be updated in a different order. Furthermore, if a composite type is used for the unit datatype, atomicity is 1602a1729e3fSJunchao Zhang not guaranteed across the whole vertex. Therefore, this function is mostly only used with primitive types such as 1603a1729e3fSJunchao Zhang integers. 1604a1729e3fSJunchao Zhang 1605cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFComputeDegreeBegin()`, `PetscSFReduceBegin()`, `PetscSFSetGraph()` 1606a1729e3fSJunchao Zhang @*/ 1607d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFFetchAndOpBegin(PetscSF sf, MPI_Datatype unit, void *rootdata, const void *leafdata, void *leafupdate, MPI_Op op) 1608d71ae5a4SJacob Faibussowitsch { 1609eb02082bSJunchao Zhang PetscMemType rootmtype, leafmtype, leafupdatemtype; 1610a1729e3fSJunchao Zhang 1611a1729e3fSJunchao Zhang PetscFunctionBegin; 1612a1729e3fSJunchao Zhang PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 16139566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 16149566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(PETSCSF_FetchAndOpBegin, sf, 0, 0, 0)); 16159566063dSJacob Faibussowitsch PetscCall(PetscGetMemType(rootdata, &rootmtype)); 16169566063dSJacob Faibussowitsch PetscCall(PetscGetMemType(leafdata, &leafmtype)); 16179566063dSJacob Faibussowitsch PetscCall(PetscGetMemType(leafupdate, &leafupdatemtype)); 161808401ef6SPierre Jolivet PetscCheck(leafmtype == leafupdatemtype, PETSC_COMM_SELF, PETSC_ERR_SUP, "No support for leafdata and leafupdate in different memory types"); 1619dbbe0bcdSBarry Smith PetscUseTypeMethod(sf, FetchAndOpBegin, unit, rootmtype, rootdata, leafmtype, leafdata, leafupdate, op); 16209566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(PETSCSF_FetchAndOpBegin, sf, 0, 0, 0)); 1621a1729e3fSJunchao Zhang PetscFunctionReturn(0); 1622a1729e3fSJunchao Zhang } 1623a1729e3fSJunchao Zhang 1624a1729e3fSJunchao Zhang /*@C 1625cab54364SBarry Smith PetscSFFetchAndOpWithMemTypeBegin - begin operation with explicit memory types that fetches values from root and updates atomically by 1626cab54364SBarry Smith applying operation using my leaf value, to be completed with `PetscSFFetchAndOpEnd()` 1627d3b3e55cSJunchao Zhang 1628d3b3e55cSJunchao Zhang Collective 1629d3b3e55cSJunchao Zhang 1630d3b3e55cSJunchao Zhang Input Parameters: 1631d3b3e55cSJunchao Zhang + sf - star forest 1632d3b3e55cSJunchao Zhang . unit - data type 1633d3b3e55cSJunchao Zhang . rootmtype - memory type of rootdata 1634d3b3e55cSJunchao Zhang . leafmtype - memory type of leafdata 1635d3b3e55cSJunchao Zhang . leafdata - leaf values to use in reduction 1636d3b3e55cSJunchao Zhang . leafupdatemtype - memory type of leafupdate 1637d3b3e55cSJunchao Zhang - op - operation to use for reduction 1638d3b3e55cSJunchao Zhang 1639d3b3e55cSJunchao Zhang Output Parameters: 1640d3b3e55cSJunchao Zhang + rootdata - root values to be updated, input state is seen by first process to perform an update 1641d3b3e55cSJunchao Zhang - leafupdate - state at each leaf's respective root immediately prior to my atomic update 1642d3b3e55cSJunchao Zhang 1643d3b3e55cSJunchao Zhang Level: advanced 1644d3b3e55cSJunchao Zhang 1645cab54364SBarry Smith Note: 1646cab54364SBarry Smith See `PetscSFFetchAndOpBegin()` for more details. 1647d3b3e55cSJunchao Zhang 1648cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFFetchAndOpBegin()`, `PetscSFComputeDegreeBegin()`, `PetscSFReduceBegin()`, `PetscSFSetGraph()` 1649d3b3e55cSJunchao Zhang @*/ 1650d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFFetchAndOpWithMemTypeBegin(PetscSF sf, MPI_Datatype unit, PetscMemType rootmtype, void *rootdata, PetscMemType leafmtype, const void *leafdata, PetscMemType leafupdatemtype, void *leafupdate, MPI_Op op) 1651d71ae5a4SJacob Faibussowitsch { 1652d3b3e55cSJunchao Zhang PetscFunctionBegin; 1653d3b3e55cSJunchao Zhang PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 16549566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 16559566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(PETSCSF_FetchAndOpBegin, sf, 0, 0, 0)); 165608401ef6SPierre Jolivet PetscCheck(leafmtype == leafupdatemtype, PETSC_COMM_SELF, PETSC_ERR_SUP, "No support for leafdata and leafupdate in different memory types"); 1657dbbe0bcdSBarry Smith PetscUseTypeMethod(sf, FetchAndOpBegin, unit, rootmtype, rootdata, leafmtype, leafdata, leafupdate, op); 16589566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(PETSCSF_FetchAndOpBegin, sf, 0, 0, 0)); 1659d3b3e55cSJunchao Zhang PetscFunctionReturn(0); 1660d3b3e55cSJunchao Zhang } 1661d3b3e55cSJunchao Zhang 1662d3b3e55cSJunchao Zhang /*@C 1663a1729e3fSJunchao Zhang PetscSFFetchAndOpEnd - end operation started in matching call to PetscSFFetchAndOpBegin() to fetch values from roots and update atomically by applying operation using my leaf value 1664a1729e3fSJunchao Zhang 1665a1729e3fSJunchao Zhang Collective 1666a1729e3fSJunchao Zhang 16674165533cSJose E. Roman Input Parameters: 1668a1729e3fSJunchao Zhang + sf - star forest 1669a1729e3fSJunchao Zhang . unit - data type 1670a1729e3fSJunchao Zhang . leafdata - leaf values to use in reduction 1671a1729e3fSJunchao Zhang - op - operation to use for reduction 1672a1729e3fSJunchao Zhang 16734165533cSJose E. Roman Output Parameters: 1674a1729e3fSJunchao Zhang + rootdata - root values to be updated, input state is seen by first process to perform an update 1675a1729e3fSJunchao Zhang - leafupdate - state at each leaf's respective root immediately prior to my atomic update 1676a1729e3fSJunchao Zhang 1677a1729e3fSJunchao Zhang Level: advanced 1678a1729e3fSJunchao Zhang 1679cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFComputeDegreeEnd()`, `PetscSFReduceEnd()`, `PetscSFSetGraph()` 1680a1729e3fSJunchao Zhang @*/ 1681d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFFetchAndOpEnd(PetscSF sf, MPI_Datatype unit, void *rootdata, const void *leafdata, void *leafupdate, MPI_Op op) 1682d71ae5a4SJacob Faibussowitsch { 1683a1729e3fSJunchao Zhang PetscFunctionBegin; 1684a1729e3fSJunchao Zhang PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 16859566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(PETSCSF_FetchAndOpEnd, sf, 0, 0, 0)); 1686dbbe0bcdSBarry Smith PetscUseTypeMethod(sf, FetchAndOpEnd, unit, rootdata, leafdata, leafupdate, op); 16879566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(PETSCSF_FetchAndOpEnd, sf, 0, 0, 0)); 1688a1729e3fSJunchao Zhang PetscFunctionReturn(0); 1689a1729e3fSJunchao Zhang } 1690a1729e3fSJunchao Zhang 1691a1729e3fSJunchao Zhang /*@C 1692cab54364SBarry Smith PetscSFComputeDegreeBegin - begin computation of degree for each root vertex, to be completed with `PetscSFComputeDegreeEnd()` 169395fce210SBarry Smith 169495fce210SBarry Smith Collective 169595fce210SBarry Smith 16964165533cSJose E. Roman Input Parameter: 169795fce210SBarry Smith . sf - star forest 169895fce210SBarry Smith 16994165533cSJose E. Roman Output Parameter: 170095fce210SBarry Smith . degree - degree of each root vertex 170195fce210SBarry Smith 170295fce210SBarry Smith Level: advanced 170395fce210SBarry Smith 1704cab54364SBarry Smith Note: 1705cab54364SBarry Smith The returned array is owned by `PetscSF` and automatically freed by `PetscSFDestroy()`. Hence no need to call `PetscFree()` on it. 1706ffe67aa5SVáclav Hapla 1707cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFGatherBegin()`, `PetscSFComputeDegreeEnd()` 170895fce210SBarry Smith @*/ 1709d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFComputeDegreeBegin(PetscSF sf, const PetscInt **degree) 1710d71ae5a4SJacob Faibussowitsch { 171195fce210SBarry Smith PetscFunctionBegin; 171295fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 171395fce210SBarry Smith PetscSFCheckGraphSet(sf, 1); 171495fce210SBarry Smith PetscValidPointer(degree, 2); 1715803bd9e8SMatthew G. Knepley if (!sf->degreeknown) { 17165b0d146aSStefano Zampini PetscInt i, nroots = sf->nroots, maxlocal; 171728b400f6SJacob Faibussowitsch PetscCheck(!sf->degree, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Calls to PetscSFComputeDegreeBegin() cannot be nested."); 17185b0d146aSStefano Zampini maxlocal = sf->maxleaf - sf->minleaf + 1; 17199566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nroots, &sf->degree)); 17209566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(PetscMax(maxlocal, 1), &sf->degreetmp)); /* allocate at least one entry, see check in PetscSFComputeDegreeEnd() */ 172129046d53SLisandro Dalcin for (i = 0; i < nroots; i++) sf->degree[i] = 0; 17229837ea96SMatthew G. Knepley for (i = 0; i < maxlocal; i++) sf->degreetmp[i] = 1; 17239566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sf, MPIU_INT, sf->degreetmp - sf->minleaf, sf->degree, MPI_SUM)); 172495fce210SBarry Smith } 172595fce210SBarry Smith *degree = NULL; 172695fce210SBarry Smith PetscFunctionReturn(0); 172795fce210SBarry Smith } 172895fce210SBarry Smith 172995fce210SBarry Smith /*@C 1730cab54364SBarry Smith PetscSFComputeDegreeEnd - complete computation of degree for each root vertex, started with `PetscSFComputeDegreeBegin()` 173195fce210SBarry Smith 173295fce210SBarry Smith Collective 173395fce210SBarry Smith 17344165533cSJose E. Roman Input Parameter: 173595fce210SBarry Smith . sf - star forest 173695fce210SBarry Smith 17374165533cSJose E. Roman Output Parameter: 173895fce210SBarry Smith . degree - degree of each root vertex 173995fce210SBarry Smith 174095fce210SBarry Smith Level: developer 174195fce210SBarry Smith 1742cab54364SBarry Smith Note: 1743cab54364SBarry Smith The returned array is owned by `PetscSF` and automatically freed by `PetscSFDestroy()`. Hence no need to call `PetscFree()` on it. 1744ffe67aa5SVáclav Hapla 1745cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFGatherBegin()`, `PetscSFComputeDegreeBegin()` 174695fce210SBarry Smith @*/ 1747d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFComputeDegreeEnd(PetscSF sf, const PetscInt **degree) 1748d71ae5a4SJacob Faibussowitsch { 174995fce210SBarry Smith PetscFunctionBegin; 175095fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 175195fce210SBarry Smith PetscSFCheckGraphSet(sf, 1); 175229046d53SLisandro Dalcin PetscValidPointer(degree, 2); 175395fce210SBarry Smith if (!sf->degreeknown) { 175428b400f6SJacob Faibussowitsch PetscCheck(sf->degreetmp, PETSC_COMM_SELF, PETSC_ERR_ARG_WRONGSTATE, "Must call PetscSFComputeDegreeBegin() before PetscSFComputeDegreeEnd()"); 17559566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sf, MPIU_INT, sf->degreetmp - sf->minleaf, sf->degree, MPI_SUM)); 17569566063dSJacob Faibussowitsch PetscCall(PetscFree(sf->degreetmp)); 175795fce210SBarry Smith sf->degreeknown = PETSC_TRUE; 175895fce210SBarry Smith } 175995fce210SBarry Smith *degree = sf->degree; 176095fce210SBarry Smith PetscFunctionReturn(0); 176195fce210SBarry Smith } 176295fce210SBarry Smith 1763673100f5SVaclav Hapla /*@C 1764cab54364SBarry Smith PetscSFComputeMultiRootOriginalNumbering - Returns original numbering of multi-roots (roots of multi-SF returned by `PetscSFGetMultiSF()`). 176566dfcd1aSVaclav Hapla Each multi-root is assigned index of the corresponding original root. 1766673100f5SVaclav Hapla 1767673100f5SVaclav Hapla Collective 1768673100f5SVaclav Hapla 17694165533cSJose E. Roman Input Parameters: 1770673100f5SVaclav Hapla + sf - star forest 1771cab54364SBarry Smith - degree - degree of each root vertex, computed with `PetscSFComputeDegreeBegin()`/`PetscSFComputeDegreeEnd()` 1772673100f5SVaclav Hapla 17734165533cSJose E. Roman Output Parameters: 177466dfcd1aSVaclav Hapla + nMultiRoots - (optional) number of multi-roots (roots of multi-SF) 177566dfcd1aSVaclav Hapla - multiRootsOrigNumbering - original indices of multi-roots; length of this array is nMultiRoots 1776673100f5SVaclav Hapla 1777673100f5SVaclav Hapla Level: developer 1778673100f5SVaclav Hapla 1779cab54364SBarry Smith Note: 1780cab54364SBarry Smith The returned array multiRootsOrigNumbering is newly allocated and should be destroyed with `PetscFree()` when no longer needed. 1781ffe67aa5SVáclav Hapla 1782cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFComputeDegreeBegin()`, `PetscSFComputeDegreeEnd()`, `PetscSFGetMultiSF()` 1783673100f5SVaclav Hapla @*/ 1784d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFComputeMultiRootOriginalNumbering(PetscSF sf, const PetscInt degree[], PetscInt *nMultiRoots, PetscInt *multiRootsOrigNumbering[]) 1785d71ae5a4SJacob Faibussowitsch { 1786673100f5SVaclav Hapla PetscSF msf; 1787673100f5SVaclav Hapla PetscInt i, j, k, nroots, nmroots; 1788673100f5SVaclav Hapla 1789673100f5SVaclav Hapla PetscFunctionBegin; 1790673100f5SVaclav Hapla PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 17919566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sf, &nroots, NULL, NULL, NULL)); 179229328920SVaclav Hapla if (nroots) PetscValidIntPointer(degree, 2); 179366dfcd1aSVaclav Hapla if (nMultiRoots) PetscValidIntPointer(nMultiRoots, 3); 179466dfcd1aSVaclav Hapla PetscValidPointer(multiRootsOrigNumbering, 4); 17959566063dSJacob Faibussowitsch PetscCall(PetscSFGetMultiSF(sf, &msf)); 17969566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(msf, &nmroots, NULL, NULL, NULL)); 17979566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nmroots, multiRootsOrigNumbering)); 1798673100f5SVaclav Hapla for (i = 0, j = 0, k = 0; i < nroots; i++) { 1799673100f5SVaclav Hapla if (!degree[i]) continue; 1800ad540459SPierre Jolivet for (j = 0; j < degree[i]; j++, k++) (*multiRootsOrigNumbering)[k] = i; 1801673100f5SVaclav Hapla } 180208401ef6SPierre Jolivet PetscCheck(k == nmroots, PETSC_COMM_SELF, PETSC_ERR_PLIB, "sanity check fail"); 180366dfcd1aSVaclav Hapla if (nMultiRoots) *nMultiRoots = nmroots; 1804673100f5SVaclav Hapla PetscFunctionReturn(0); 1805673100f5SVaclav Hapla } 1806673100f5SVaclav Hapla 180795fce210SBarry Smith /*@C 1808cab54364SBarry Smith PetscSFGatherBegin - begin pointwise gather of all leaves into multi-roots, to be completed with `PetscSFGatherEnd()` 180995fce210SBarry Smith 181095fce210SBarry Smith Collective 181195fce210SBarry Smith 18124165533cSJose E. Roman Input Parameters: 181395fce210SBarry Smith + sf - star forest 181495fce210SBarry Smith . unit - data type 181595fce210SBarry Smith - leafdata - leaf data to gather to roots 181695fce210SBarry Smith 18174165533cSJose E. Roman Output Parameter: 181895fce210SBarry Smith . multirootdata - root buffer to gather into, amount of space per root is equal to its degree 181995fce210SBarry Smith 182095fce210SBarry Smith Level: intermediate 182195fce210SBarry Smith 1822cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFComputeDegreeBegin()`, `PetscSFScatterBegin()` 182395fce210SBarry Smith @*/ 1824d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFGatherBegin(PetscSF sf, MPI_Datatype unit, const void *leafdata, void *multirootdata) 1825d71ae5a4SJacob Faibussowitsch { 1826a5526d50SJunchao Zhang PetscSF multi = NULL; 182795fce210SBarry Smith 182895fce210SBarry Smith PetscFunctionBegin; 182995fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 18309566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 18319566063dSJacob Faibussowitsch PetscCall(PetscSFGetMultiSF(sf, &multi)); 18329566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(multi, unit, leafdata, multirootdata, MPI_REPLACE)); 183395fce210SBarry Smith PetscFunctionReturn(0); 183495fce210SBarry Smith } 183595fce210SBarry Smith 183695fce210SBarry Smith /*@C 1837cab54364SBarry Smith PetscSFGatherEnd - ends pointwise gather operation that was started with `PetscSFGatherBegin()` 183895fce210SBarry Smith 183995fce210SBarry Smith Collective 184095fce210SBarry Smith 18414165533cSJose E. Roman Input Parameters: 184295fce210SBarry Smith + sf - star forest 184395fce210SBarry Smith . unit - data type 184495fce210SBarry Smith - leafdata - leaf data to gather to roots 184595fce210SBarry Smith 18464165533cSJose E. Roman Output Parameter: 184795fce210SBarry Smith . multirootdata - root buffer to gather into, amount of space per root is equal to its degree 184895fce210SBarry Smith 184995fce210SBarry Smith Level: intermediate 185095fce210SBarry Smith 1851cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFComputeDegreeEnd()`, `PetscSFScatterEnd()` 185295fce210SBarry Smith @*/ 1853d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFGatherEnd(PetscSF sf, MPI_Datatype unit, const void *leafdata, void *multirootdata) 1854d71ae5a4SJacob Faibussowitsch { 1855a5526d50SJunchao Zhang PetscSF multi = NULL; 185695fce210SBarry Smith 185795fce210SBarry Smith PetscFunctionBegin; 185895fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 18599566063dSJacob Faibussowitsch PetscCall(PetscSFGetMultiSF(sf, &multi)); 18609566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(multi, unit, leafdata, multirootdata, MPI_REPLACE)); 186195fce210SBarry Smith PetscFunctionReturn(0); 186295fce210SBarry Smith } 186395fce210SBarry Smith 186495fce210SBarry Smith /*@C 1865cab54364SBarry Smith PetscSFScatterBegin - begin pointwise scatter operation from multi-roots to leaves, to be completed with `PetscSFScatterEnd()` 186695fce210SBarry Smith 186795fce210SBarry Smith Collective 186895fce210SBarry Smith 18694165533cSJose E. Roman Input Parameters: 187095fce210SBarry Smith + sf - star forest 187195fce210SBarry Smith . unit - data type 187295fce210SBarry Smith - multirootdata - root buffer to send to each leaf, one unit of data per leaf 187395fce210SBarry Smith 18744165533cSJose E. Roman Output Parameter: 187595fce210SBarry Smith . leafdata - leaf data to be update with personal data from each respective root 187695fce210SBarry Smith 187795fce210SBarry Smith Level: intermediate 187895fce210SBarry Smith 1879cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFComputeDegreeBegin()`, `PetscSFScatterBegin()` 188095fce210SBarry Smith @*/ 1881d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFScatterBegin(PetscSF sf, MPI_Datatype unit, const void *multirootdata, void *leafdata) 1882d71ae5a4SJacob Faibussowitsch { 1883a5526d50SJunchao Zhang PetscSF multi = NULL; 188495fce210SBarry Smith 188595fce210SBarry Smith PetscFunctionBegin; 188695fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 18879566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 18889566063dSJacob Faibussowitsch PetscCall(PetscSFGetMultiSF(sf, &multi)); 18899566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(multi, unit, multirootdata, leafdata, MPI_REPLACE)); 189095fce210SBarry Smith PetscFunctionReturn(0); 189195fce210SBarry Smith } 189295fce210SBarry Smith 189395fce210SBarry Smith /*@C 1894cab54364SBarry Smith PetscSFScatterEnd - ends pointwise scatter operation that was started with `PetscSFScatterBegin()` 189595fce210SBarry Smith 189695fce210SBarry Smith Collective 189795fce210SBarry Smith 18984165533cSJose E. Roman Input Parameters: 189995fce210SBarry Smith + sf - star forest 190095fce210SBarry Smith . unit - data type 190195fce210SBarry Smith - multirootdata - root buffer to send to each leaf, one unit of data per leaf 190295fce210SBarry Smith 19034165533cSJose E. Roman Output Parameter: 190495fce210SBarry Smith . leafdata - leaf data to be update with personal data from each respective root 190595fce210SBarry Smith 190695fce210SBarry Smith Level: intermediate 190795fce210SBarry Smith 1908cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFComputeDegreeEnd()`, `PetscSFScatterEnd()` 190995fce210SBarry Smith @*/ 1910d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFScatterEnd(PetscSF sf, MPI_Datatype unit, const void *multirootdata, void *leafdata) 1911d71ae5a4SJacob Faibussowitsch { 1912a5526d50SJunchao Zhang PetscSF multi = NULL; 191395fce210SBarry Smith 191495fce210SBarry Smith PetscFunctionBegin; 191595fce210SBarry Smith PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 19169566063dSJacob Faibussowitsch PetscCall(PetscSFGetMultiSF(sf, &multi)); 19179566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(multi, unit, multirootdata, leafdata, MPI_REPLACE)); 191895fce210SBarry Smith PetscFunctionReturn(0); 191995fce210SBarry Smith } 1920a7b3aa13SAta Mesgarnejad 1921d71ae5a4SJacob Faibussowitsch static PetscErrorCode PetscSFCheckLeavesUnique_Private(PetscSF sf) 1922d71ae5a4SJacob Faibussowitsch { 1923a072220fSLawrence Mitchell PetscInt i, n, nleaves; 1924a072220fSLawrence Mitchell const PetscInt *ilocal = NULL; 1925a072220fSLawrence Mitchell PetscHSetI seen; 1926a072220fSLawrence Mitchell 1927a072220fSLawrence Mitchell PetscFunctionBegin; 1928b458e8f1SJose E. Roman if (PetscDefined(USE_DEBUG)) { 19299566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sf, NULL, &nleaves, &ilocal, NULL)); 19309566063dSJacob Faibussowitsch PetscCall(PetscHSetICreate(&seen)); 1931a072220fSLawrence Mitchell for (i = 0; i < nleaves; i++) { 1932a072220fSLawrence Mitchell const PetscInt leaf = ilocal ? ilocal[i] : i; 19339566063dSJacob Faibussowitsch PetscCall(PetscHSetIAdd(seen, leaf)); 1934a072220fSLawrence Mitchell } 19359566063dSJacob Faibussowitsch PetscCall(PetscHSetIGetSize(seen, &n)); 193608401ef6SPierre Jolivet PetscCheck(n == nleaves, PETSC_COMM_SELF, PETSC_ERR_ARG_OUTOFRANGE, "Provided leaves have repeated values: all leaves must be unique"); 19379566063dSJacob Faibussowitsch PetscCall(PetscHSetIDestroy(&seen)); 1938b458e8f1SJose E. Roman } 1939a072220fSLawrence Mitchell PetscFunctionReturn(0); 1940a072220fSLawrence Mitchell } 194154729392SStefano Zampini 1942a7b3aa13SAta Mesgarnejad /*@ 1943cab54364SBarry Smith PetscSFCompose - Compose a new `PetscSF` by putting the second `PetscSF` under the first one in a top (roots) down (leaves) view 1944a7b3aa13SAta Mesgarnejad 1945a7b3aa13SAta Mesgarnejad Input Parameters: 1946cab54364SBarry Smith + sfA - The first `PetscSF` 1947cab54364SBarry Smith - sfB - The second `PetscSF` 1948a7b3aa13SAta Mesgarnejad 1949a7b3aa13SAta Mesgarnejad Output Parameters: 1950cab54364SBarry Smith . sfBA - The composite `PetscSF` 1951a7b3aa13SAta Mesgarnejad 1952a7b3aa13SAta Mesgarnejad Level: developer 1953a7b3aa13SAta Mesgarnejad 1954a072220fSLawrence Mitchell Notes: 1955cab54364SBarry Smith Currently, the two `PetscSF`s must be defined on congruent communicators and they must be true star 195654729392SStefano Zampini forests, i.e. the same leaf is not connected with different roots. 195754729392SStefano Zampini 195854729392SStefano Zampini sfA's leaf space and sfB's root space might be partially overlapped. The composition builds 195954729392SStefano Zampini a graph with sfA's roots and sfB's leaves only when there is a path between them. Unconnected 196054729392SStefano Zampini nodes (roots or leaves) are not in sfBA. Doing a Bcast on the new SF is equivalent to doing a 196154729392SStefano Zampini Bcast on sfA, then a Bcast on sfB, on connected nodes. 1962a072220fSLawrence Mitchell 1963db781477SPatrick Sanan .seealso: `PetscSF`, `PetscSFComposeInverse()`, `PetscSFGetGraph()`, `PetscSFSetGraph()` 1964a7b3aa13SAta Mesgarnejad @*/ 1965d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFCompose(PetscSF sfA, PetscSF sfB, PetscSF *sfBA) 1966d71ae5a4SJacob Faibussowitsch { 1967a7b3aa13SAta Mesgarnejad const PetscSFNode *remotePointsA, *remotePointsB; 1968d41018fbSJunchao Zhang PetscSFNode *remotePointsBA = NULL, *reorderedRemotePointsA = NULL, *leafdataB; 196954729392SStefano Zampini const PetscInt *localPointsA, *localPointsB; 197054729392SStefano Zampini PetscInt *localPointsBA; 197154729392SStefano Zampini PetscInt i, numRootsA, numLeavesA, numRootsB, numLeavesB, minleaf, maxleaf, numLeavesBA; 197254729392SStefano Zampini PetscBool denseB; 1973a7b3aa13SAta Mesgarnejad 1974a7b3aa13SAta Mesgarnejad PetscFunctionBegin; 1975a7b3aa13SAta Mesgarnejad PetscValidHeaderSpecific(sfA, PETSCSF_CLASSID, 1); 197629046d53SLisandro Dalcin PetscSFCheckGraphSet(sfA, 1); 197729046d53SLisandro Dalcin PetscValidHeaderSpecific(sfB, PETSCSF_CLASSID, 2); 197829046d53SLisandro Dalcin PetscSFCheckGraphSet(sfB, 2); 197954729392SStefano Zampini PetscCheckSameComm(sfA, 1, sfB, 2); 198029046d53SLisandro Dalcin PetscValidPointer(sfBA, 3); 19819566063dSJacob Faibussowitsch PetscCall(PetscSFCheckLeavesUnique_Private(sfA)); 19829566063dSJacob Faibussowitsch PetscCall(PetscSFCheckLeavesUnique_Private(sfB)); 198354729392SStefano Zampini 19849566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfA, &numRootsA, &numLeavesA, &localPointsA, &remotePointsA)); 19859566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfB, &numRootsB, &numLeavesB, &localPointsB, &remotePointsB)); 19860ea77edaSksagiyam /* Make sure that PetscSFBcast{Begin, End}(sfB, ...) works with root data of size */ 19870ea77edaSksagiyam /* numRootsB; otherwise, garbage will be broadcasted. */ 19880ea77edaSksagiyam /* Example (comm size = 1): */ 19890ea77edaSksagiyam /* sfA: 0 <- (0, 0) */ 19900ea77edaSksagiyam /* sfB: 100 <- (0, 0) */ 19910ea77edaSksagiyam /* 101 <- (0, 1) */ 19920ea77edaSksagiyam /* Here, we have remotePointsA = [(0, 0)], but for remotePointsA to be a valid tartget */ 19930ea77edaSksagiyam /* of sfB, it has to be recasted as [(0, 0), (-1, -1)] so that points 100 and 101 would */ 19940ea77edaSksagiyam /* receive (0, 0) and (-1, -1), respectively, when PetscSFBcast(sfB, ...) is called on */ 19950ea77edaSksagiyam /* remotePointsA; if not recasted, point 101 would receive a garbage value. */ 19969566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numRootsB, &reorderedRemotePointsA)); 199754729392SStefano Zampini for (i = 0; i < numRootsB; i++) { 199854729392SStefano Zampini reorderedRemotePointsA[i].rank = -1; 199954729392SStefano Zampini reorderedRemotePointsA[i].index = -1; 200054729392SStefano Zampini } 200154729392SStefano Zampini for (i = 0; i < numLeavesA; i++) { 20020ea77edaSksagiyam PetscInt localp = localPointsA ? localPointsA[i] : i; 20030ea77edaSksagiyam 20040ea77edaSksagiyam if (localp >= numRootsB) continue; 20050ea77edaSksagiyam reorderedRemotePointsA[localp] = remotePointsA[i]; 200654729392SStefano Zampini } 2007d41018fbSJunchao Zhang remotePointsA = reorderedRemotePointsA; 20089566063dSJacob Faibussowitsch PetscCall(PetscSFGetLeafRange(sfB, &minleaf, &maxleaf)); 20099566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(maxleaf - minleaf + 1, &leafdataB)); 20100ea77edaSksagiyam for (i = 0; i < maxleaf - minleaf + 1; i++) { 20110ea77edaSksagiyam leafdataB[i].rank = -1; 20120ea77edaSksagiyam leafdataB[i].index = -1; 20130ea77edaSksagiyam } 20149566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(sfB, MPIU_2INT, remotePointsA, leafdataB - minleaf, MPI_REPLACE)); 20159566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(sfB, MPIU_2INT, remotePointsA, leafdataB - minleaf, MPI_REPLACE)); 20169566063dSJacob Faibussowitsch PetscCall(PetscFree(reorderedRemotePointsA)); 2017d41018fbSJunchao Zhang 201854729392SStefano Zampini denseB = (PetscBool)!localPointsB; 201954729392SStefano Zampini for (i = 0, numLeavesBA = 0; i < numLeavesB; i++) { 202054729392SStefano Zampini if (leafdataB[localPointsB ? localPointsB[i] - minleaf : i].rank == -1) denseB = PETSC_FALSE; 202154729392SStefano Zampini else numLeavesBA++; 202254729392SStefano Zampini } 202354729392SStefano Zampini if (denseB) { 2024d41018fbSJunchao Zhang localPointsBA = NULL; 2025d41018fbSJunchao Zhang remotePointsBA = leafdataB; 2026d41018fbSJunchao Zhang } else { 20279566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numLeavesBA, &localPointsBA)); 20289566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numLeavesBA, &remotePointsBA)); 202954729392SStefano Zampini for (i = 0, numLeavesBA = 0; i < numLeavesB; i++) { 203054729392SStefano Zampini const PetscInt l = localPointsB ? localPointsB[i] : i; 203154729392SStefano Zampini 203254729392SStefano Zampini if (leafdataB[l - minleaf].rank == -1) continue; 203354729392SStefano Zampini remotePointsBA[numLeavesBA] = leafdataB[l - minleaf]; 203454729392SStefano Zampini localPointsBA[numLeavesBA] = l; 203554729392SStefano Zampini numLeavesBA++; 203654729392SStefano Zampini } 20379566063dSJacob Faibussowitsch PetscCall(PetscFree(leafdataB)); 2038d41018fbSJunchao Zhang } 20399566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)sfA), sfBA)); 20409566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(*sfBA)); 20419566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(*sfBA, numRootsA, numLeavesBA, localPointsBA, PETSC_OWN_POINTER, remotePointsBA, PETSC_OWN_POINTER)); 2042a7b3aa13SAta Mesgarnejad PetscFunctionReturn(0); 2043a7b3aa13SAta Mesgarnejad } 20441c6ba672SJunchao Zhang 204504c0ada0SJunchao Zhang /*@ 2046cab54364SBarry Smith PetscSFComposeInverse - Compose a new `PetscSF` by putting the inverse of the second `PetscSF` under the first one 204704c0ada0SJunchao Zhang 204804c0ada0SJunchao Zhang Input Parameters: 2049cab54364SBarry Smith + sfA - The first `PetscSF` 2050cab54364SBarry Smith - sfB - The second `PetscSF` 205104c0ada0SJunchao Zhang 205204c0ada0SJunchao Zhang Output Parameters: 2053cab54364SBarry Smith . sfBA - The composite `PetscSF`. 205404c0ada0SJunchao Zhang 205504c0ada0SJunchao Zhang Level: developer 205604c0ada0SJunchao Zhang 205754729392SStefano Zampini Notes: 205854729392SStefano Zampini Currently, the two SFs must be defined on congruent communicators and they must be true star 205954729392SStefano Zampini forests, i.e. the same leaf is not connected with different roots. Even more, all roots of the 206054729392SStefano Zampini second SF must have a degree of 1, i.e., no roots have more than one leaf connected. 206154729392SStefano Zampini 206254729392SStefano Zampini sfA's leaf space and sfB's leaf space might be partially overlapped. The composition builds 206354729392SStefano Zampini a graph with sfA's roots and sfB's roots only when there is a path between them. Unconnected 206454729392SStefano Zampini roots are not in sfBA. Doing a Bcast on the new SF is equivalent to doing a Bcast on sfA, then 206554729392SStefano Zampini a Reduce on sfB, on connected roots. 206654729392SStefano Zampini 2067db781477SPatrick Sanan .seealso: `PetscSF`, `PetscSFCompose()`, `PetscSFGetGraph()`, `PetscSFSetGraph()`, `PetscSFCreateInverseSF()` 206804c0ada0SJunchao Zhang @*/ 2069d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFComposeInverse(PetscSF sfA, PetscSF sfB, PetscSF *sfBA) 2070d71ae5a4SJacob Faibussowitsch { 207104c0ada0SJunchao Zhang const PetscSFNode *remotePointsA, *remotePointsB; 207204c0ada0SJunchao Zhang PetscSFNode *remotePointsBA; 207304c0ada0SJunchao Zhang const PetscInt *localPointsA, *localPointsB; 207454729392SStefano Zampini PetscSFNode *reorderedRemotePointsA = NULL; 207554729392SStefano Zampini PetscInt i, numRootsA, numLeavesA, numLeavesBA, numRootsB, numLeavesB, minleaf, maxleaf, *localPointsBA; 20765b0d146aSStefano Zampini MPI_Op op; 20775b0d146aSStefano Zampini #if defined(PETSC_USE_64BIT_INDICES) 20785b0d146aSStefano Zampini PetscBool iswin; 20795b0d146aSStefano Zampini #endif 208004c0ada0SJunchao Zhang 208104c0ada0SJunchao Zhang PetscFunctionBegin; 208204c0ada0SJunchao Zhang PetscValidHeaderSpecific(sfA, PETSCSF_CLASSID, 1); 208304c0ada0SJunchao Zhang PetscSFCheckGraphSet(sfA, 1); 208404c0ada0SJunchao Zhang PetscValidHeaderSpecific(sfB, PETSCSF_CLASSID, 2); 208504c0ada0SJunchao Zhang PetscSFCheckGraphSet(sfB, 2); 208654729392SStefano Zampini PetscCheckSameComm(sfA, 1, sfB, 2); 208704c0ada0SJunchao Zhang PetscValidPointer(sfBA, 3); 20889566063dSJacob Faibussowitsch PetscCall(PetscSFCheckLeavesUnique_Private(sfA)); 20899566063dSJacob Faibussowitsch PetscCall(PetscSFCheckLeavesUnique_Private(sfB)); 209054729392SStefano Zampini 20919566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfA, &numRootsA, &numLeavesA, &localPointsA, &remotePointsA)); 20929566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfB, &numRootsB, &numLeavesB, &localPointsB, &remotePointsB)); 20935b0d146aSStefano Zampini 20945b0d146aSStefano Zampini /* TODO: Check roots of sfB have degree of 1 */ 20955b0d146aSStefano Zampini /* Once we implement it, we can replace the MPI_MAXLOC 209683df288dSJunchao Zhang with MPI_REPLACE. In that case, MPI_MAXLOC and MPI_REPLACE have the same effect. 20975b0d146aSStefano Zampini We use MPI_MAXLOC only to have a deterministic output from this routine if 20985b0d146aSStefano Zampini the root condition is not meet. 20995b0d146aSStefano Zampini */ 21005b0d146aSStefano Zampini op = MPI_MAXLOC; 21015b0d146aSStefano Zampini #if defined(PETSC_USE_64BIT_INDICES) 21025b0d146aSStefano Zampini /* we accept a non-deterministic output (if any) with PETSCSFWINDOW, since MPI_MAXLOC cannot operate on MPIU_2INT with MPI_Accumulate */ 21039566063dSJacob Faibussowitsch PetscCall(PetscObjectTypeCompare((PetscObject)sfB, PETSCSFWINDOW, &iswin)); 210483df288dSJunchao Zhang if (iswin) op = MPI_REPLACE; 21055b0d146aSStefano Zampini #endif 21065b0d146aSStefano Zampini 21079566063dSJacob Faibussowitsch PetscCall(PetscSFGetLeafRange(sfB, &minleaf, &maxleaf)); 21089566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(maxleaf - minleaf + 1, &reorderedRemotePointsA)); 210954729392SStefano Zampini for (i = 0; i < maxleaf - minleaf + 1; i++) { 211054729392SStefano Zampini reorderedRemotePointsA[i].rank = -1; 211154729392SStefano Zampini reorderedRemotePointsA[i].index = -1; 211254729392SStefano Zampini } 211354729392SStefano Zampini if (localPointsA) { 211454729392SStefano Zampini for (i = 0; i < numLeavesA; i++) { 211554729392SStefano Zampini if (localPointsA[i] > maxleaf || localPointsA[i] < minleaf) continue; 211654729392SStefano Zampini reorderedRemotePointsA[localPointsA[i] - minleaf] = remotePointsA[i]; 211754729392SStefano Zampini } 211854729392SStefano Zampini } else { 211954729392SStefano Zampini for (i = 0; i < numLeavesA; i++) { 212054729392SStefano Zampini if (i > maxleaf || i < minleaf) continue; 212154729392SStefano Zampini reorderedRemotePointsA[i - minleaf] = remotePointsA[i]; 212254729392SStefano Zampini } 212354729392SStefano Zampini } 212454729392SStefano Zampini 21259566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numRootsB, &localPointsBA)); 21269566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(numRootsB, &remotePointsBA)); 212754729392SStefano Zampini for (i = 0; i < numRootsB; i++) { 212854729392SStefano Zampini remotePointsBA[i].rank = -1; 212954729392SStefano Zampini remotePointsBA[i].index = -1; 213054729392SStefano Zampini } 213154729392SStefano Zampini 21329566063dSJacob Faibussowitsch PetscCall(PetscSFReduceBegin(sfB, MPIU_2INT, reorderedRemotePointsA - minleaf, remotePointsBA, op)); 21339566063dSJacob Faibussowitsch PetscCall(PetscSFReduceEnd(sfB, MPIU_2INT, reorderedRemotePointsA - minleaf, remotePointsBA, op)); 21349566063dSJacob Faibussowitsch PetscCall(PetscFree(reorderedRemotePointsA)); 213554729392SStefano Zampini for (i = 0, numLeavesBA = 0; i < numRootsB; i++) { 213654729392SStefano Zampini if (remotePointsBA[i].rank == -1) continue; 213754729392SStefano Zampini remotePointsBA[numLeavesBA].rank = remotePointsBA[i].rank; 213854729392SStefano Zampini remotePointsBA[numLeavesBA].index = remotePointsBA[i].index; 213954729392SStefano Zampini localPointsBA[numLeavesBA] = i; 214054729392SStefano Zampini numLeavesBA++; 214154729392SStefano Zampini } 21429566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PetscObjectComm((PetscObject)sfA), sfBA)); 21439566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(*sfBA)); 21449566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(*sfBA, numRootsA, numLeavesBA, localPointsBA, PETSC_OWN_POINTER, remotePointsBA, PETSC_OWN_POINTER)); 214504c0ada0SJunchao Zhang PetscFunctionReturn(0); 214604c0ada0SJunchao Zhang } 214704c0ada0SJunchao Zhang 21481c6ba672SJunchao Zhang /* 2149cab54364SBarry Smith PetscSFCreateLocalSF_Private - Creates a local `PetscSF` that only has intra-process edges of the global `PetscSF` 21501c6ba672SJunchao Zhang 21511c6ba672SJunchao Zhang Input Parameters: 2152cab54364SBarry Smith . sf - The global `PetscSF` 21531c6ba672SJunchao Zhang 21541c6ba672SJunchao Zhang Output Parameters: 2155cab54364SBarry Smith . out - The local `PetscSF` 2156cab54364SBarry Smith 2157cab54364SBarry Smith .seealso: `PetscSF`, `PetscSFCreate()` 21581c6ba672SJunchao Zhang */ 2159d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFCreateLocalSF_Private(PetscSF sf, PetscSF *out) 2160d71ae5a4SJacob Faibussowitsch { 21611c6ba672SJunchao Zhang MPI_Comm comm; 21621c6ba672SJunchao Zhang PetscMPIInt myrank; 21631c6ba672SJunchao Zhang const PetscInt *ilocal; 21641c6ba672SJunchao Zhang const PetscSFNode *iremote; 21651c6ba672SJunchao Zhang PetscInt i, j, nroots, nleaves, lnleaves, *lilocal; 21661c6ba672SJunchao Zhang PetscSFNode *liremote; 21671c6ba672SJunchao Zhang PetscSF lsf; 21681c6ba672SJunchao Zhang 21691c6ba672SJunchao Zhang PetscFunctionBegin; 21701c6ba672SJunchao Zhang PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 2171dbbe0bcdSBarry Smith if (sf->ops->CreateLocalSF) PetscUseTypeMethod(sf, CreateLocalSF, out); 2172dbbe0bcdSBarry Smith else { 21731c6ba672SJunchao Zhang /* Could use PetscSFCreateEmbeddedLeafSF, but since we know the comm is PETSC_COMM_SELF, we can make it fast */ 21749566063dSJacob Faibussowitsch PetscCall(PetscObjectGetComm((PetscObject)sf, &comm)); 21759566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &myrank)); 21761c6ba672SJunchao Zhang 21771c6ba672SJunchao Zhang /* Find out local edges and build a local SF */ 21789566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sf, &nroots, &nleaves, &ilocal, &iremote)); 21799371c9d4SSatish Balay for (i = lnleaves = 0; i < nleaves; i++) { 21809371c9d4SSatish Balay if (iremote[i].rank == (PetscInt)myrank) lnleaves++; 21819371c9d4SSatish Balay } 21829566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(lnleaves, &lilocal)); 21839566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(lnleaves, &liremote)); 21841c6ba672SJunchao Zhang 21851c6ba672SJunchao Zhang for (i = j = 0; i < nleaves; i++) { 21861c6ba672SJunchao Zhang if (iremote[i].rank == (PetscInt)myrank) { 21871c6ba672SJunchao Zhang lilocal[j] = ilocal ? ilocal[i] : i; /* ilocal=NULL for contiguous storage */ 21881c6ba672SJunchao Zhang liremote[j].rank = 0; /* rank in PETSC_COMM_SELF */ 21891c6ba672SJunchao Zhang liremote[j].index = iremote[i].index; 21901c6ba672SJunchao Zhang j++; 21911c6ba672SJunchao Zhang } 21921c6ba672SJunchao Zhang } 21939566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(PETSC_COMM_SELF, &lsf)); 21949566063dSJacob Faibussowitsch PetscCall(PetscSFSetFromOptions(lsf)); 21959566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(lsf, nroots, lnleaves, lilocal, PETSC_OWN_POINTER, liremote, PETSC_OWN_POINTER)); 21969566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(lsf)); 21971c6ba672SJunchao Zhang *out = lsf; 21981c6ba672SJunchao Zhang } 21991c6ba672SJunchao Zhang PetscFunctionReturn(0); 22001c6ba672SJunchao Zhang } 2201dd5b3ca6SJunchao Zhang 2202dd5b3ca6SJunchao Zhang /* Similar to PetscSFBcast, but only Bcast to leaves on rank 0 */ 2203d71ae5a4SJacob Faibussowitsch PetscErrorCode PetscSFBcastToZero_Private(PetscSF sf, MPI_Datatype unit, const void *rootdata, void *leafdata) 2204d71ae5a4SJacob Faibussowitsch { 2205eb02082bSJunchao Zhang PetscMemType rootmtype, leafmtype; 2206dd5b3ca6SJunchao Zhang 2207dd5b3ca6SJunchao Zhang PetscFunctionBegin; 2208dd5b3ca6SJunchao Zhang PetscValidHeaderSpecific(sf, PETSCSF_CLASSID, 1); 22099566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(sf)); 22109566063dSJacob Faibussowitsch PetscCall(PetscLogEventBegin(PETSCSF_BcastBegin, sf, 0, 0, 0)); 22119566063dSJacob Faibussowitsch PetscCall(PetscGetMemType(rootdata, &rootmtype)); 22129566063dSJacob Faibussowitsch PetscCall(PetscGetMemType(leafdata, &leafmtype)); 2213dbbe0bcdSBarry Smith PetscUseTypeMethod(sf, BcastToZero, unit, rootmtype, rootdata, leafmtype, leafdata); 22149566063dSJacob Faibussowitsch PetscCall(PetscLogEventEnd(PETSCSF_BcastBegin, sf, 0, 0, 0)); 2215dd5b3ca6SJunchao Zhang PetscFunctionReturn(0); 2216dd5b3ca6SJunchao Zhang } 2217dd5b3ca6SJunchao Zhang 2218157edd7aSVaclav Hapla /*@ 2219cab54364SBarry Smith PetscSFConcatenate - concatenate multiple `PetscSF` into one 2220157edd7aSVaclav Hapla 2221157edd7aSVaclav Hapla Input Parameters: 2222157edd7aSVaclav Hapla + comm - the communicator 2223cab54364SBarry Smith . nsfs - the number of input `PetscSF` 2224cab54364SBarry Smith . sfs - the array of input `PetscSF` 22251f40158dSVaclav Hapla . rootMode - the root mode specifying how roots are handled 2226cab54364SBarry Smith - leafOffsets - the array of local leaf offsets, one for each input `PetscSF`, or NULL for contiguous storage 2227157edd7aSVaclav Hapla 2228157edd7aSVaclav Hapla Output Parameters: 2229cab54364SBarry Smith . newsf - The resulting `PetscSF` 2230157edd7aSVaclav Hapla 22311f40158dSVaclav Hapla Level: advanced 2232157edd7aSVaclav Hapla 2233157edd7aSVaclav Hapla Notes: 2234157edd7aSVaclav Hapla The communicator of all SFs in sfs must be comm. 2235157edd7aSVaclav Hapla 22361f40158dSVaclav Hapla Leaves are always concatenated locally, keeping them ordered by the input SF index and original local order. 2237157edd7aSVaclav Hapla The offsets in leafOffsets are added to the original leaf indices. 2238157edd7aSVaclav Hapla If all input SFs use contiguous leaf storage (ilocal = NULL), leafOffsets can be passed as NULL as well. 2239157edd7aSVaclav Hapla In this case, NULL is also passed as ilocal to the resulting SF. 2240157edd7aSVaclav Hapla If any input SF has non-null ilocal, leafOffsets is needed to distinguish leaves from different input SFs. 2241157edd7aSVaclav Hapla In this case, user is responsible to provide correct offsets so that the resulting leaves are unique (otherwise an error occurs). 2242157edd7aSVaclav Hapla 22431f40158dSVaclav Hapla All root modes retain the essential connectivity condition: 22441f40158dSVaclav Hapla If two leaves of the same input SF are connected (sharing the same root), they are also connected in the output SF. 22451f40158dSVaclav Hapla Parameter rootMode controls how the input root spaces are combined. 22461f40158dSVaclav Hapla For `PETSCSF_CONCATENATE_ROOTMODE_SHARED`, the root space is considered the same for each input SF (checked in debug mode) and is also the same in the output SF. 22471f40158dSVaclav Hapla For `PETSCSF_CONCATENATE_ROOTMODE_LOCAL` and `PETSCSF_CONCATENATE_ROOTMODE_GLOBAL`, the input root spaces are taken as separate and joined. 22481f40158dSVaclav Hapla `PETSCSF_CONCATENATE_ROOTMODE_LOCAL` joins the root spaces locally; 22491f40158dSVaclav Hapla roots of sfs[0], sfs[1], sfs[2], ... are joined on each rank separately, ordered by input SF and original local index, and renumbered contiguously. 22501f40158dSVaclav Hapla `PETSCSF_CONCATENATE_ROOTMODE_GLOBAL` joins the root spaces globally; 22511f40158dSVaclav Hapla roots of sfs[0], sfs[1], sfs[2, ... are joined globally, ordered by input SF index and original global index, and renumbered contiguously; 22521f40158dSVaclav Hapla the original root ranks are ignored. 22531f40158dSVaclav Hapla For both `PETSCSF_CONCATENATE_ROOTMODE_LOCAL` and `PETSCSF_CONCATENATE_ROOTMODE_GLOBAL`, 22541f40158dSVaclav Hapla the output SF's root layout is such that the local number of roots is a sum of the input SF's local numbers of roots on each rank to keep the load balancing. 22551f40158dSVaclav Hapla However, for `PETSCSF_CONCATENATE_ROOTMODE_GLOBAL`, that means roots can move to different ranks. 22561f40158dSVaclav Hapla 22571f40158dSVaclav Hapla Example: 22581f40158dSVaclav Hapla We can use src/vec/is/sf/tests/ex18.c to compare the root modes. By running 22591f40158dSVaclav Hapla $ make -C $PETSC_DIR/src/vec/is/sf/tests ex18 22601f40158dSVaclav Hapla $ for m in {local,global,shared}; do 22611f40158dSVaclav Hapla $ mpirun -n 2 $PETSC_DIR/src/vec/is/sf/tests/ex18 -nsfs 2 -n 2 -root_mode $m -sf_view 22621f40158dSVaclav Hapla $ done 22631f40158dSVaclav Hapla we generate two identical SFs sf_0 and sf_1, 22641f40158dSVaclav Hapla $ PetscSF Object: sf_0 2 MPI processes 22651f40158dSVaclav Hapla $ type: basic 22661f40158dSVaclav Hapla $ rank #leaves #roots 22671f40158dSVaclav Hapla $ [ 0] 4 2 22681f40158dSVaclav Hapla $ [ 1] 4 2 22691f40158dSVaclav Hapla $ leaves roots roots in global numbering 22701f40158dSVaclav Hapla $ ( 0, 0) <- ( 0, 0) = 0 22711f40158dSVaclav Hapla $ ( 0, 1) <- ( 0, 1) = 1 22721f40158dSVaclav Hapla $ ( 0, 2) <- ( 1, 0) = 2 22731f40158dSVaclav Hapla $ ( 0, 3) <- ( 1, 1) = 3 22741f40158dSVaclav Hapla $ ( 1, 0) <- ( 0, 0) = 0 22751f40158dSVaclav Hapla $ ( 1, 1) <- ( 0, 1) = 1 22761f40158dSVaclav Hapla $ ( 1, 2) <- ( 1, 0) = 2 22771f40158dSVaclav Hapla $ ( 1, 3) <- ( 1, 1) = 3 22781f40158dSVaclav Hapla and pass them to `PetscSFConcatenate()` along with different choices of rootMode, yielding different result_sf: 22791f40158dSVaclav Hapla $ rootMode = local: 22801f40158dSVaclav Hapla $ PetscSF Object: result_sf 2 MPI processes 22811f40158dSVaclav Hapla $ type: basic 22821f40158dSVaclav Hapla $ rank #leaves #roots 22831f40158dSVaclav Hapla $ [ 0] 8 4 22841f40158dSVaclav Hapla $ [ 1] 8 4 22851f40158dSVaclav Hapla $ leaves roots roots in global numbering 22861f40158dSVaclav Hapla $ ( 0, 0) <- ( 0, 0) = 0 22871f40158dSVaclav Hapla $ ( 0, 1) <- ( 0, 1) = 1 22881f40158dSVaclav Hapla $ ( 0, 2) <- ( 1, 0) = 4 22891f40158dSVaclav Hapla $ ( 0, 3) <- ( 1, 1) = 5 22901f40158dSVaclav Hapla $ ( 0, 4) <- ( 0, 2) = 2 22911f40158dSVaclav Hapla $ ( 0, 5) <- ( 0, 3) = 3 22921f40158dSVaclav Hapla $ ( 0, 6) <- ( 1, 2) = 6 22931f40158dSVaclav Hapla $ ( 0, 7) <- ( 1, 3) = 7 22941f40158dSVaclav Hapla $ ( 1, 0) <- ( 0, 0) = 0 22951f40158dSVaclav Hapla $ ( 1, 1) <- ( 0, 1) = 1 22961f40158dSVaclav Hapla $ ( 1, 2) <- ( 1, 0) = 4 22971f40158dSVaclav Hapla $ ( 1, 3) <- ( 1, 1) = 5 22981f40158dSVaclav Hapla $ ( 1, 4) <- ( 0, 2) = 2 22991f40158dSVaclav Hapla $ ( 1, 5) <- ( 0, 3) = 3 23001f40158dSVaclav Hapla $ ( 1, 6) <- ( 1, 2) = 6 23011f40158dSVaclav Hapla $ ( 1, 7) <- ( 1, 3) = 7 23021f40158dSVaclav Hapla $ 23031f40158dSVaclav Hapla $ rootMode = global: 23041f40158dSVaclav Hapla $ PetscSF Object: result_sf 2 MPI processes 23051f40158dSVaclav Hapla $ type: basic 23061f40158dSVaclav Hapla $ rank #leaves #roots 23071f40158dSVaclav Hapla $ [ 0] 8 4 23081f40158dSVaclav Hapla $ [ 1] 8 4 23091f40158dSVaclav Hapla $ leaves roots roots in global numbering 23101f40158dSVaclav Hapla $ ( 0, 0) <- ( 0, 0) = 0 23111f40158dSVaclav Hapla $ ( 0, 1) <- ( 0, 1) = 1 23121f40158dSVaclav Hapla $ ( 0, 2) <- ( 0, 2) = 2 23131f40158dSVaclav Hapla $ ( 0, 3) <- ( 0, 3) = 3 23141f40158dSVaclav Hapla $ ( 0, 4) <- ( 1, 0) = 4 23151f40158dSVaclav Hapla $ ( 0, 5) <- ( 1, 1) = 5 23161f40158dSVaclav Hapla $ ( 0, 6) <- ( 1, 2) = 6 23171f40158dSVaclav Hapla $ ( 0, 7) <- ( 1, 3) = 7 23181f40158dSVaclav Hapla $ ( 1, 0) <- ( 0, 0) = 0 23191f40158dSVaclav Hapla $ ( 1, 1) <- ( 0, 1) = 1 23201f40158dSVaclav Hapla $ ( 1, 2) <- ( 0, 2) = 2 23211f40158dSVaclav Hapla $ ( 1, 3) <- ( 0, 3) = 3 23221f40158dSVaclav Hapla $ ( 1, 4) <- ( 1, 0) = 4 23231f40158dSVaclav Hapla $ ( 1, 5) <- ( 1, 1) = 5 23241f40158dSVaclav Hapla $ ( 1, 6) <- ( 1, 2) = 6 23251f40158dSVaclav Hapla $ ( 1, 7) <- ( 1, 3) = 7 23261f40158dSVaclav Hapla $ 23271f40158dSVaclav Hapla $ rootMode = shared: 23281f40158dSVaclav Hapla $ PetscSF Object: result_sf 2 MPI processes 23291f40158dSVaclav Hapla $ type: basic 23301f40158dSVaclav Hapla $ rank #leaves #roots 23311f40158dSVaclav Hapla $ [ 0] 8 2 23321f40158dSVaclav Hapla $ [ 1] 8 2 23331f40158dSVaclav Hapla $ leaves roots roots in global numbering 23341f40158dSVaclav Hapla $ ( 0, 0) <- ( 0, 0) = 0 23351f40158dSVaclav Hapla $ ( 0, 1) <- ( 0, 1) = 1 23361f40158dSVaclav Hapla $ ( 0, 2) <- ( 1, 0) = 2 23371f40158dSVaclav Hapla $ ( 0, 3) <- ( 1, 1) = 3 23381f40158dSVaclav Hapla $ ( 0, 4) <- ( 0, 0) = 0 23391f40158dSVaclav Hapla $ ( 0, 5) <- ( 0, 1) = 1 23401f40158dSVaclav Hapla $ ( 0, 6) <- ( 1, 0) = 2 23411f40158dSVaclav Hapla $ ( 0, 7) <- ( 1, 1) = 3 23421f40158dSVaclav Hapla $ ( 1, 0) <- ( 0, 0) = 0 23431f40158dSVaclav Hapla $ ( 1, 1) <- ( 0, 1) = 1 23441f40158dSVaclav Hapla $ ( 1, 2) <- ( 1, 0) = 2 23451f40158dSVaclav Hapla $ ( 1, 3) <- ( 1, 1) = 3 23461f40158dSVaclav Hapla $ ( 1, 4) <- ( 0, 0) = 0 23471f40158dSVaclav Hapla $ ( 1, 5) <- ( 0, 1) = 1 23481f40158dSVaclav Hapla $ ( 1, 6) <- ( 1, 0) = 2 23491f40158dSVaclav Hapla $ ( 1, 7) <- ( 1, 1) = 3 23501f40158dSVaclav Hapla 23511f40158dSVaclav Hapla .seealso: `PetscSF`, `PetscSFCompose()`, `PetscSFGetGraph()`, `PetscSFSetGraph()`, `PetscSFConcatenateRootMode` 2352157edd7aSVaclav Hapla @*/ 23531f40158dSVaclav Hapla PetscErrorCode PetscSFConcatenate(MPI_Comm comm, PetscInt nsfs, PetscSF sfs[], PetscSFConcatenateRootMode rootMode, PetscInt leafOffsets[], PetscSF *newsf) 2354d71ae5a4SJacob Faibussowitsch { 2355157edd7aSVaclav Hapla PetscInt i, s, nLeaves, nRoots; 2356157edd7aSVaclav Hapla PetscInt *leafArrayOffsets; 2357157edd7aSVaclav Hapla PetscInt *ilocal_new; 2358157edd7aSVaclav Hapla PetscSFNode *iremote_new; 2359157edd7aSVaclav Hapla PetscBool all_ilocal_null = PETSC_FALSE; 23601f40158dSVaclav Hapla PetscLayout glayout = NULL; 23611f40158dSVaclav Hapla PetscInt *gremote = NULL; 23621f40158dSVaclav Hapla PetscMPIInt rank, size; 2363157edd7aSVaclav Hapla 2364157edd7aSVaclav Hapla PetscFunctionBegin; 236512f479c1SVaclav Hapla if (PetscDefined(USE_DEBUG)) { 2366157edd7aSVaclav Hapla PetscSF dummy; /* just to have a PetscObject on comm for input validation */ 2367157edd7aSVaclav Hapla 23689566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &dummy)); 2369157edd7aSVaclav Hapla PetscValidLogicalCollectiveInt(dummy, nsfs, 2); 2370157edd7aSVaclav Hapla PetscValidPointer(sfs, 3); 2371157edd7aSVaclav Hapla for (i = 0; i < nsfs; i++) { 2372157edd7aSVaclav Hapla PetscValidHeaderSpecific(sfs[i], PETSCSF_CLASSID, 3); 2373157edd7aSVaclav Hapla PetscCheckSameComm(dummy, 1, sfs[i], 3); 2374157edd7aSVaclav Hapla } 23751f40158dSVaclav Hapla PetscValidLogicalCollectiveEnum(dummy, rootMode, 4); 2376157edd7aSVaclav Hapla if (leafOffsets) PetscValidIntPointer(leafOffsets, 5); 2377157edd7aSVaclav Hapla PetscValidPointer(newsf, 6); 23789566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&dummy)); 2379157edd7aSVaclav Hapla } 2380157edd7aSVaclav Hapla if (!nsfs) { 23819566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, newsf)); 23829566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(*newsf, 0, 0, NULL, PETSC_OWN_POINTER, NULL, PETSC_OWN_POINTER)); 2383157edd7aSVaclav Hapla PetscFunctionReturn(0); 2384157edd7aSVaclav Hapla } 23859566063dSJacob Faibussowitsch PetscCallMPI(MPI_Comm_rank(comm, &rank)); 23861f40158dSVaclav Hapla PetscCallMPI(MPI_Comm_size(comm, &size)); 2387157edd7aSVaclav Hapla 23881f40158dSVaclav Hapla /* Calculate leaf array offsets */ 23899566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nsfs + 1, &leafArrayOffsets)); 2390157edd7aSVaclav Hapla leafArrayOffsets[0] = 0; 2391157edd7aSVaclav Hapla for (s = 0; s < nsfs; s++) { 2392157edd7aSVaclav Hapla PetscInt nl; 2393157edd7aSVaclav Hapla 23949566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfs[s], NULL, &nl, NULL, NULL)); 2395157edd7aSVaclav Hapla leafArrayOffsets[s + 1] = leafArrayOffsets[s] + nl; 2396157edd7aSVaclav Hapla } 2397157edd7aSVaclav Hapla nLeaves = leafArrayOffsets[nsfs]; 2398157edd7aSVaclav Hapla 23991f40158dSVaclav Hapla /* Calculate number of roots */ 24001f40158dSVaclav Hapla switch (rootMode) { 24011f40158dSVaclav Hapla case PETSCSF_CONCATENATE_ROOTMODE_SHARED: { 24021f40158dSVaclav Hapla PetscCall(PetscSFGetGraph(sfs[0], &nRoots, NULL, NULL, NULL)); 24031f40158dSVaclav Hapla if (PetscDefined(USE_DEBUG)) { 24041f40158dSVaclav Hapla for (s = 1; s < nsfs; s++) { 24051f40158dSVaclav Hapla PetscInt nr; 24061f40158dSVaclav Hapla 24071f40158dSVaclav Hapla PetscCall(PetscSFGetGraph(sfs[s], &nr, NULL, NULL, NULL)); 24081f40158dSVaclav Hapla PetscCheck(nr == nRoots, comm, PETSC_ERR_ARG_SIZ, "rootMode = %s but sfs[%" PetscInt_FMT "] has a different number of roots (%" PetscInt_FMT ") than sfs[0] (%" PetscInt_FMT ")", PetscSFConcatenateRootModes[rootMode], s, nr, nRoots); 24091f40158dSVaclav Hapla } 24101f40158dSVaclav Hapla } 24111f40158dSVaclav Hapla } break; 24121f40158dSVaclav Hapla case PETSCSF_CONCATENATE_ROOTMODE_GLOBAL: { 24131f40158dSVaclav Hapla /* Calculate also global layout in this case */ 24141f40158dSVaclav Hapla PetscInt *nls; 24151f40158dSVaclav Hapla PetscLayout *lts; 24161f40158dSVaclav Hapla PetscInt **inds; 24171f40158dSVaclav Hapla PetscInt j; 24181f40158dSVaclav Hapla PetscInt rootOffset = 0; 24191f40158dSVaclav Hapla 24201f40158dSVaclav Hapla PetscCall(PetscCalloc3(nsfs, <s, nsfs, &nls, nsfs, &inds)); 24211f40158dSVaclav Hapla PetscCall(PetscLayoutCreate(comm, &glayout)); 24221f40158dSVaclav Hapla glayout->bs = 1; 24231f40158dSVaclav Hapla glayout->n = 0; 24241f40158dSVaclav Hapla glayout->N = 0; 24251f40158dSVaclav Hapla for (s = 0; s < nsfs; s++) { 24261f40158dSVaclav Hapla PetscCall(PetscSFGetGraphLayout(sfs[s], <s[s], &nls[s], NULL, &inds[s])); 24271f40158dSVaclav Hapla glayout->n += lts[s]->n; 24281f40158dSVaclav Hapla glayout->N += lts[s]->N; 24291f40158dSVaclav Hapla } 24301f40158dSVaclav Hapla PetscCall(PetscLayoutSetUp(glayout)); 24311f40158dSVaclav Hapla PetscCall(PetscMalloc1(nLeaves, &gremote)); 24321f40158dSVaclav Hapla for (s = 0, j = 0; s < nsfs; s++) { 24331f40158dSVaclav Hapla for (i = 0; i < nls[s]; i++, j++) gremote[j] = inds[s][i] + rootOffset; 24341f40158dSVaclav Hapla rootOffset += lts[s]->N; 24351f40158dSVaclav Hapla PetscCall(PetscLayoutDestroy(<s[s])); 24361f40158dSVaclav Hapla PetscCall(PetscFree(inds[s])); 24371f40158dSVaclav Hapla } 24381f40158dSVaclav Hapla PetscCall(PetscFree3(lts, nls, inds)); 24391f40158dSVaclav Hapla nRoots = glayout->N; 24401f40158dSVaclav Hapla } break; 24411f40158dSVaclav Hapla case PETSCSF_CONCATENATE_ROOTMODE_LOCAL: 24421f40158dSVaclav Hapla /* nRoots calculated later in this case */ 24431f40158dSVaclav Hapla break; 24441f40158dSVaclav Hapla default: 24451f40158dSVaclav Hapla SETERRQ(comm, PETSC_ERR_ARG_WRONG, "Invalid PetscSFConcatenateRootMode %d", rootMode); 24461f40158dSVaclav Hapla } 24471f40158dSVaclav Hapla 2448157edd7aSVaclav Hapla if (!leafOffsets) { 2449157edd7aSVaclav Hapla all_ilocal_null = PETSC_TRUE; 2450157edd7aSVaclav Hapla for (s = 0; s < nsfs; s++) { 2451157edd7aSVaclav Hapla const PetscInt *ilocal; 2452157edd7aSVaclav Hapla 24539566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfs[s], NULL, NULL, &ilocal, NULL)); 2454157edd7aSVaclav Hapla if (ilocal) { 2455157edd7aSVaclav Hapla all_ilocal_null = PETSC_FALSE; 2456157edd7aSVaclav Hapla break; 2457157edd7aSVaclav Hapla } 2458157edd7aSVaclav Hapla } 2459157edd7aSVaclav Hapla PetscCheck(all_ilocal_null, PETSC_COMM_SELF, PETSC_ERR_ARG_NULL, "leafOffsets can be passed as NULL only if all SFs have ilocal = NULL"); 2460157edd7aSVaclav Hapla } 2461157edd7aSVaclav Hapla 2462157edd7aSVaclav Hapla /* Renumber and concatenate local leaves */ 2463157edd7aSVaclav Hapla ilocal_new = NULL; 2464157edd7aSVaclav Hapla if (!all_ilocal_null) { 24659566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nLeaves, &ilocal_new)); 2466157edd7aSVaclav Hapla for (i = 0; i < nLeaves; i++) ilocal_new[i] = -1; 2467157edd7aSVaclav Hapla for (s = 0; s < nsfs; s++) { 2468157edd7aSVaclav Hapla const PetscInt *ilocal; 2469157edd7aSVaclav Hapla PetscInt *ilocal_l = &ilocal_new[leafArrayOffsets[s]]; 2470157edd7aSVaclav Hapla PetscInt i, nleaves_l; 2471157edd7aSVaclav Hapla 24729566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfs[s], NULL, &nleaves_l, &ilocal, NULL)); 2473157edd7aSVaclav Hapla for (i = 0; i < nleaves_l; i++) ilocal_l[i] = (ilocal ? ilocal[i] : i) + leafOffsets[s]; 2474157edd7aSVaclav Hapla } 2475157edd7aSVaclav Hapla } 2476157edd7aSVaclav Hapla 2477157edd7aSVaclav Hapla /* Renumber and concatenate remote roots */ 24781f40158dSVaclav Hapla if (rootMode == PETSCSF_CONCATENATE_ROOTMODE_LOCAL || rootMode == PETSCSF_CONCATENATE_ROOTMODE_SHARED) { 24791f40158dSVaclav Hapla PetscInt rootOffset = 0; 24801f40158dSVaclav Hapla 24819566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nLeaves, &iremote_new)); 2482157edd7aSVaclav Hapla for (i = 0; i < nLeaves; i++) { 2483157edd7aSVaclav Hapla iremote_new[i].rank = -1; 2484157edd7aSVaclav Hapla iremote_new[i].index = -1; 2485157edd7aSVaclav Hapla } 2486157edd7aSVaclav Hapla for (s = 0; s < nsfs; s++) { 2487157edd7aSVaclav Hapla PetscInt i, nl, nr; 2488157edd7aSVaclav Hapla PetscSF tmp_sf; 2489157edd7aSVaclav Hapla const PetscSFNode *iremote; 2490157edd7aSVaclav Hapla PetscSFNode *tmp_rootdata; 2491157edd7aSVaclav Hapla PetscSFNode *tmp_leafdata = &iremote_new[leafArrayOffsets[s]]; 2492157edd7aSVaclav Hapla 24939566063dSJacob Faibussowitsch PetscCall(PetscSFGetGraph(sfs[s], &nr, &nl, NULL, &iremote)); 24949566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, &tmp_sf)); 2495157edd7aSVaclav Hapla /* create helper SF with contiguous leaves */ 24969566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(tmp_sf, nr, nl, NULL, PETSC_USE_POINTER, (PetscSFNode *)iremote, PETSC_COPY_VALUES)); 24979566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(tmp_sf)); 24989566063dSJacob Faibussowitsch PetscCall(PetscMalloc1(nr, &tmp_rootdata)); 24991f40158dSVaclav Hapla if (rootMode == PETSCSF_CONCATENATE_ROOTMODE_LOCAL) { 2500157edd7aSVaclav Hapla for (i = 0; i < nr; i++) { 25011f40158dSVaclav Hapla tmp_rootdata[i].index = i + rootOffset; 2502157edd7aSVaclav Hapla tmp_rootdata[i].rank = (PetscInt)rank; 2503157edd7aSVaclav Hapla } 25041f40158dSVaclav Hapla rootOffset += nr; 25051f40158dSVaclav Hapla } else { 25061f40158dSVaclav Hapla for (i = 0; i < nr; i++) { 25071f40158dSVaclav Hapla tmp_rootdata[i].index = i; 25081f40158dSVaclav Hapla tmp_rootdata[i].rank = (PetscInt)rank; 25091f40158dSVaclav Hapla } 25101f40158dSVaclav Hapla } 25119566063dSJacob Faibussowitsch PetscCall(PetscSFBcastBegin(tmp_sf, MPIU_2INT, tmp_rootdata, tmp_leafdata, MPI_REPLACE)); 25129566063dSJacob Faibussowitsch PetscCall(PetscSFBcastEnd(tmp_sf, MPIU_2INT, tmp_rootdata, tmp_leafdata, MPI_REPLACE)); 25139566063dSJacob Faibussowitsch PetscCall(PetscSFDestroy(&tmp_sf)); 25149566063dSJacob Faibussowitsch PetscCall(PetscFree(tmp_rootdata)); 2515157edd7aSVaclav Hapla } 25161f40158dSVaclav Hapla if (rootMode == PETSCSF_CONCATENATE_ROOTMODE_LOCAL) { nRoots = rootOffset; } // else nRoots already calculated above 2517157edd7aSVaclav Hapla 2518157edd7aSVaclav Hapla /* Build the new SF */ 25199566063dSJacob Faibussowitsch PetscCall(PetscSFCreate(comm, newsf)); 25209566063dSJacob Faibussowitsch PetscCall(PetscSFSetGraph(*newsf, nRoots, nLeaves, ilocal_new, PETSC_OWN_POINTER, iremote_new, PETSC_OWN_POINTER)); 25211f40158dSVaclav Hapla } else { 25221f40158dSVaclav Hapla /* Build the new SF */ 25231f40158dSVaclav Hapla PetscCall(PetscSFCreate(comm, newsf)); 25241f40158dSVaclav Hapla PetscCall(PetscSFSetGraphLayout(*newsf, glayout, nLeaves, ilocal_new, PETSC_OWN_POINTER, gremote)); 25251f40158dSVaclav Hapla } 25269566063dSJacob Faibussowitsch PetscCall(PetscSFSetUp(*newsf)); 25271f40158dSVaclav Hapla PetscCall(PetscSFViewFromOptions(*newsf, NULL, "-sf_concat_view")); 25281f40158dSVaclav Hapla PetscCall(PetscLayoutDestroy(&glayout)); 25291f40158dSVaclav Hapla PetscCall(PetscFree(gremote)); 25309566063dSJacob Faibussowitsch PetscCall(PetscFree(leafArrayOffsets)); 2531157edd7aSVaclav Hapla PetscFunctionReturn(0); 2532157edd7aSVaclav Hapla } 2533