1c4762a1bSJed Brown static char help[]= "Test PetscSFFetchAndOp on patterned SF graphs. PetscSFFetchAndOp internally uses PetscSFBcastAndOp \n\ 2c4762a1bSJed Brown and PetscSFReduce. So it is a good test to see if they all work for patterned graphs.\n\ 3c4762a1bSJed Brown Run with ./prog -op [replace | sum]\n\n"; 4c4762a1bSJed Brown 5c4762a1bSJed Brown #include <petscvec.h> 6c4762a1bSJed Brown #include <petscsf.h> 7c4762a1bSJed Brown int main(int argc,char **argv) 8c4762a1bSJed Brown { 9c4762a1bSJed Brown PetscInt i,N=10,low,high,nleaves; 10c4762a1bSJed Brown PetscMPIInt size,rank; 11c4762a1bSJed Brown Vec x,y,y2,gy2; 12c4762a1bSJed Brown PetscScalar *rootdata,*leafdata,*leafupdate; 13c4762a1bSJed Brown PetscLayout layout; 14c4762a1bSJed Brown PetscSF gathersf,allgathersf,alltoallsf; 15c4762a1bSJed Brown MPI_Op op=MPI_SUM; 16c4762a1bSJed Brown char opname[64]; 17c4762a1bSJed Brown const char *mpiopname; 18c4762a1bSJed Brown PetscBool flag,isreplace,issum; 19c4762a1bSJed Brown 20*b122ec5aSJacob Faibussowitsch CHKERRQ(PetscInitialize(&argc,&argv,(char*)0,help)); 215f80ce2aSJacob Faibussowitsch CHKERRMPI(MPI_Comm_size(PETSC_COMM_WORLD,&size)); 225f80ce2aSJacob Faibussowitsch CHKERRMPI(MPI_Comm_rank(PETSC_COMM_WORLD,&rank)); 23c4762a1bSJed Brown 245f80ce2aSJacob Faibussowitsch CHKERRQ(PetscOptionsGetString(NULL,NULL,"-op",opname,sizeof(opname),&flag)); 255f80ce2aSJacob Faibussowitsch CHKERRQ(PetscStrcmp(opname,"replace",&isreplace)); 265f80ce2aSJacob Faibussowitsch CHKERRQ(PetscStrcmp(opname,"sum",&issum)); 27c4762a1bSJed Brown 2883df288dSJunchao Zhang if (isreplace) {op = MPI_REPLACE; mpiopname = "MPI_REPLACE";} 29c4762a1bSJed Brown else if (issum) {op = MPIU_SUM; mpiopname = "MPI_SUM";} 3098921bdaSJacob Faibussowitsch else SETERRQ(PETSC_COMM_WORLD,PETSC_ERR_ARG_WRONG,"Unsupported argument (%s) to -op, which must be 'replace' or 'sum'",opname); 31c4762a1bSJed Brown 325f80ce2aSJacob Faibussowitsch CHKERRQ(VecCreate(PETSC_COMM_WORLD,&x)); 335f80ce2aSJacob Faibussowitsch CHKERRQ(VecSetFromOptions(x)); 345f80ce2aSJacob Faibussowitsch CHKERRQ(VecSetSizes(x,PETSC_DECIDE,N)); 35c4762a1bSJed Brown 36c4762a1bSJed Brown /*-------------------------------------*/ 37c4762a1bSJed Brown /* PETSCSF_PATTERN_GATHER */ 38c4762a1bSJed Brown /*-------------------------------------*/ 39c4762a1bSJed Brown 40c4762a1bSJed Brown /* set MPI vec x to [1, 2, .., N] */ 415f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetOwnershipRange(x,&low,&high)); 425f80ce2aSJacob Faibussowitsch for (i=low; i<high; i++) CHKERRQ(VecSetValue(x,i,(PetscScalar)i+1.0,INSERT_VALUES)); 435f80ce2aSJacob Faibussowitsch CHKERRQ(VecAssemblyBegin(x)); 445f80ce2aSJacob Faibussowitsch CHKERRQ(VecAssemblyEnd(x)); 45c4762a1bSJed Brown 46c4762a1bSJed Brown /* Create the gather SF */ 475f80ce2aSJacob Faibussowitsch CHKERRQ(PetscPrintf(PETSC_COMM_WORLD,"\nTesting PetscSFFetchAndOp on a PETSCSF_PATTERN_GATHER graph with op = %s\n",mpiopname)); 485f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetLayout(x,&layout)); 495f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSFCreate(PETSC_COMM_WORLD,&gathersf)); 505f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSFSetGraphWithPattern(gathersf,layout,PETSCSF_PATTERN_GATHER)); 51c4762a1bSJed Brown 52c4762a1bSJed Brown /* Create the leaf vector y (seq vector) and its duplicate y2 working as leafupdate */ 535f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSFGetGraph(gathersf,NULL,&nleaves,NULL,NULL)); 545f80ce2aSJacob Faibussowitsch CHKERRQ(VecCreateSeq(PETSC_COMM_SELF,nleaves,&y)); 555f80ce2aSJacob Faibussowitsch CHKERRQ(VecDuplicate(y,&y2)); 56c4762a1bSJed Brown 575f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetArray(x,&rootdata)); 585f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetArray(y,&leafdata)); 595f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetArray(y2,&leafupdate)); 60c4762a1bSJed Brown 61c4762a1bSJed Brown /* Bcast x to y,to initialize y = [1,N], then scale y to make leafupdate = y = [2,2*N] */ 625f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSFBcastBegin(gathersf,MPIU_SCALAR,rootdata,leafdata,MPI_REPLACE)); 635f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSFBcastEnd(gathersf,MPIU_SCALAR,rootdata,leafdata,MPI_REPLACE)); 645f80ce2aSJacob Faibussowitsch CHKERRQ(VecRestoreArray(y,&leafdata)); 655f80ce2aSJacob Faibussowitsch CHKERRQ(VecScale(y,2)); 665f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetArray(y,&leafdata)); 67c4762a1bSJed Brown 68c4762a1bSJed Brown /* FetchAndOp x to y */ 695f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSFFetchAndOpBegin(gathersf,MPIU_SCALAR,rootdata,leafdata,leafupdate,op)); 705f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSFFetchAndOpEnd(gathersf,MPIU_SCALAR,rootdata,leafdata,leafupdate,op)); 71c4762a1bSJed Brown 72c4762a1bSJed Brown /* View roots (x) and leafupdate (y2). Since this is a gather graph, leafudpate = rootdata = [1,N], then rootdata += leafdata, i.e., [3,3*N] */ 735f80ce2aSJacob Faibussowitsch CHKERRQ(VecCreateMPIWithArray(PETSC_COMM_WORLD,1,nleaves,PETSC_DECIDE,leafupdate,&gy2)); 745f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectSetName((PetscObject)x,"rootdata")); 755f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectSetName((PetscObject)gy2,"leafupdate")); 76c4762a1bSJed Brown 775f80ce2aSJacob Faibussowitsch CHKERRQ(VecView(x,PETSC_VIEWER_STDOUT_WORLD)); 785f80ce2aSJacob Faibussowitsch CHKERRQ(VecView(gy2,PETSC_VIEWER_STDOUT_WORLD)); 795f80ce2aSJacob Faibussowitsch CHKERRQ(VecDestroy(&gy2)); 80c4762a1bSJed Brown 815f80ce2aSJacob Faibussowitsch CHKERRQ(VecRestoreArray(y2,&leafupdate)); 825f80ce2aSJacob Faibussowitsch CHKERRQ(VecDestroy(&y2)); 83c4762a1bSJed Brown 845f80ce2aSJacob Faibussowitsch CHKERRQ(VecRestoreArray(y,&leafdata)); 855f80ce2aSJacob Faibussowitsch CHKERRQ(VecDestroy(&y)); 86c4762a1bSJed Brown 875f80ce2aSJacob Faibussowitsch CHKERRQ(VecRestoreArray(x,&rootdata)); 885f80ce2aSJacob Faibussowitsch /* CHKERRQ(VecDestroy(&x)); */ /* We will reuse x in ALLGATHER, so do not destroy it */ 89c4762a1bSJed Brown 905f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSFDestroy(&gathersf)); 91c4762a1bSJed Brown 92c4762a1bSJed Brown /*-------------------------------------*/ 93c4762a1bSJed Brown /* PETSCSF_PATTERN_ALLGATHER */ 94c4762a1bSJed Brown /*-------------------------------------*/ 95c4762a1bSJed Brown 96c4762a1bSJed Brown /* set MPI vec x to [1, 2, .., N] */ 975f80ce2aSJacob Faibussowitsch for (i=low; i<high; i++) CHKERRQ(VecSetValue(x,i,(PetscScalar)i+1.0,INSERT_VALUES)); 985f80ce2aSJacob Faibussowitsch CHKERRQ(VecAssemblyBegin(x)); 995f80ce2aSJacob Faibussowitsch CHKERRQ(VecAssemblyEnd(x)); 100c4762a1bSJed Brown 101c4762a1bSJed Brown /* Create the allgather SF */ 1025f80ce2aSJacob Faibussowitsch CHKERRQ(PetscPrintf(PETSC_COMM_WORLD,"\nTesting PetscSFFetchAndOp on a PETSCSF_PATTERN_ALLGATHER graph with op = %s\n",mpiopname)); 1035f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetLayout(x,&layout)); 1045f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSFCreate(PETSC_COMM_WORLD,&allgathersf)); 1055f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSFSetGraphWithPattern(allgathersf,layout,PETSCSF_PATTERN_ALLGATHER)); 106c4762a1bSJed Brown 107c4762a1bSJed Brown /* Create the leaf vector y (seq vector) and its duplicate y2 working as leafupdate */ 1085f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSFGetGraph(allgathersf,NULL,&nleaves,NULL,NULL)); 1095f80ce2aSJacob Faibussowitsch CHKERRQ(VecCreateSeq(PETSC_COMM_SELF,nleaves,&y)); 1105f80ce2aSJacob Faibussowitsch CHKERRQ(VecDuplicate(y,&y2)); 111c4762a1bSJed Brown 1125f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetArray(x,&rootdata)); 1135f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetArray(y,&leafdata)); 1145f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetArray(y2,&leafupdate)); 115c4762a1bSJed Brown 116c4762a1bSJed Brown /* Bcast x to y, to initialize y = [1,N], then scale y to make leafupdate = y = [2,2*N] */ 1175f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSFBcastBegin(allgathersf,MPIU_SCALAR,rootdata,leafdata,MPI_REPLACE)); 1185f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSFBcastEnd(allgathersf,MPIU_SCALAR,rootdata,leafdata,MPI_REPLACE)); 1195f80ce2aSJacob Faibussowitsch CHKERRQ(VecRestoreArray(y,&leafdata)); 1205f80ce2aSJacob Faibussowitsch CHKERRQ(VecScale(y,2)); 1215f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetArray(y,&leafdata)); 122c4762a1bSJed Brown 123c4762a1bSJed Brown /* FetchAndOp x to y */ 1245f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSFFetchAndOpBegin(allgathersf,MPIU_SCALAR,rootdata,leafdata,leafupdate,op)); 1255f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSFFetchAndOpEnd(allgathersf,MPIU_SCALAR,rootdata,leafdata,leafupdate,op)); 126c4762a1bSJed Brown 127c4762a1bSJed Brown /* View roots (x) and leafupdate (y2). Since this is an allgather graph, we have (suppose ranks get updates in ascending order) 128c4762a1bSJed Brown rank 0: leafupdate = rootdata = [1,N], rootdata += leafdata = [3,3*N] 129c4762a1bSJed Brown rank 1: leafupdate = rootdata = [3,3*N], rootdata += leafdata = [5,5*N] 130c4762a1bSJed Brown rank 2: leafupdate = rootdata = [5,5*N], rootdata += leafdata = [7,7*N] 131c4762a1bSJed Brown ... 132c4762a1bSJed Brown */ 1335f80ce2aSJacob Faibussowitsch CHKERRQ(VecCreateMPIWithArray(PETSC_COMM_WORLD,1,nleaves,PETSC_DECIDE,leafupdate,&gy2)); 1345f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectSetName((PetscObject)x,"rootdata")); 1355f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectSetName((PetscObject)gy2,"leafupdate")); 136c4762a1bSJed Brown 1375f80ce2aSJacob Faibussowitsch CHKERRQ(VecView(x,PETSC_VIEWER_STDOUT_WORLD)); 1385f80ce2aSJacob Faibussowitsch CHKERRQ(VecView(gy2,PETSC_VIEWER_STDOUT_WORLD)); 1395f80ce2aSJacob Faibussowitsch CHKERRQ(VecDestroy(&gy2)); 140c4762a1bSJed Brown 1415f80ce2aSJacob Faibussowitsch CHKERRQ(VecRestoreArray(y2,&leafupdate)); 1425f80ce2aSJacob Faibussowitsch CHKERRQ(VecDestroy(&y2)); 143c4762a1bSJed Brown 1445f80ce2aSJacob Faibussowitsch CHKERRQ(VecRestoreArray(y,&leafdata)); 1455f80ce2aSJacob Faibussowitsch CHKERRQ(VecDestroy(&y)); 146c4762a1bSJed Brown 1475f80ce2aSJacob Faibussowitsch CHKERRQ(VecRestoreArray(x,&rootdata)); 1485f80ce2aSJacob Faibussowitsch CHKERRQ(VecDestroy(&x)); /* We won't reuse x in ALLGATHER, so destroy it */ 149c4762a1bSJed Brown 1505f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSFDestroy(&allgathersf)); 151c4762a1bSJed Brown 152c4762a1bSJed Brown /*-------------------------------------*/ 153c4762a1bSJed Brown /* PETSCSF_PATTERN_ALLTOALL */ 154c4762a1bSJed Brown /*-------------------------------------*/ 155c4762a1bSJed Brown 1565f80ce2aSJacob Faibussowitsch CHKERRQ(VecCreate(PETSC_COMM_WORLD,&x)); 1575f80ce2aSJacob Faibussowitsch CHKERRQ(VecSetFromOptions(x)); 1585f80ce2aSJacob Faibussowitsch CHKERRQ(VecSetSizes(x,size,PETSC_DECIDE)); 159c4762a1bSJed Brown 160c4762a1bSJed Brown /* set MPI vec x to [1, 2, .., size^2] */ 1615f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetOwnershipRange(x,&low,&high)); 1625f80ce2aSJacob Faibussowitsch for (i=low; i<high; i++) CHKERRQ(VecSetValue(x,i,(PetscScalar)i+1.0,INSERT_VALUES)); 1635f80ce2aSJacob Faibussowitsch CHKERRQ(VecAssemblyBegin(x)); 1645f80ce2aSJacob Faibussowitsch CHKERRQ(VecAssemblyEnd(x)); 165c4762a1bSJed Brown 166c4762a1bSJed Brown /* Create the alltoall SF */ 1675f80ce2aSJacob Faibussowitsch CHKERRQ(PetscPrintf(PETSC_COMM_WORLD,"\nTesting PetscSFFetchAndOp on a PETSCSF_PATTERN_ALLTOALL graph with op = %s\n",mpiopname)); 1685f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSFCreate(PETSC_COMM_WORLD,&alltoallsf)); 1695f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSFSetGraphWithPattern(alltoallsf,NULL/*insignificant*/,PETSCSF_PATTERN_ALLTOALL)); 170c4762a1bSJed Brown 171c4762a1bSJed Brown /* Create the leaf vector y (seq vector) and its duplicate y2 working as leafupdate */ 1725f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSFGetGraph(alltoallsf,NULL,&nleaves,NULL,NULL)); 1735f80ce2aSJacob Faibussowitsch CHKERRQ(VecCreateSeq(PETSC_COMM_SELF,nleaves,&y)); 1745f80ce2aSJacob Faibussowitsch CHKERRQ(VecDuplicate(y,&y2)); 175c4762a1bSJed Brown 1765f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetArray(x,&rootdata)); 1775f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetArray(y,&leafdata)); 1785f80ce2aSJacob Faibussowitsch CHKERRQ(VecGetArray(y2,&leafupdate)); 179c4762a1bSJed Brown 180c4762a1bSJed Brown /* Bcast x to y, to initialize y = 1+rank+size*i, with i=0..size-1 */ 1815f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSFBcastBegin(alltoallsf,MPIU_SCALAR,rootdata,leafdata,MPI_REPLACE)); 1825f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSFBcastEnd(alltoallsf,MPIU_SCALAR,rootdata,leafdata,MPI_REPLACE)); 183c4762a1bSJed Brown 184c4762a1bSJed Brown /* FetchAndOp x to y */ 1855f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSFFetchAndOpBegin(alltoallsf,MPIU_SCALAR,rootdata,leafdata,leafupdate,op)); 1865f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSFFetchAndOpEnd(alltoallsf,MPIU_SCALAR,rootdata,leafdata,leafupdate,op)); 187c4762a1bSJed Brown 188c4762a1bSJed Brown /* View roots (x) and leafupdate (y2). Since this is an alltoall graph, each root has only one leaf. 189c4762a1bSJed Brown So, leafupdate = rootdata = 1+rank+size*i, i=0..size-1; and rootdata += leafdata, i.e., rootdata = [2,2*N] 190c4762a1bSJed Brown */ 1915f80ce2aSJacob Faibussowitsch CHKERRQ(VecCreateMPIWithArray(PETSC_COMM_WORLD,1,nleaves,PETSC_DECIDE,leafupdate,&gy2)); 1925f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectSetName((PetscObject)x,"rootdata")); 1935f80ce2aSJacob Faibussowitsch CHKERRQ(PetscObjectSetName((PetscObject)gy2,"leafupdate")); 194c4762a1bSJed Brown 1955f80ce2aSJacob Faibussowitsch CHKERRQ(VecView(x,PETSC_VIEWER_STDOUT_WORLD)); 1965f80ce2aSJacob Faibussowitsch CHKERRQ(VecView(gy2,PETSC_VIEWER_STDOUT_WORLD)); 1975f80ce2aSJacob Faibussowitsch CHKERRQ(VecDestroy(&gy2)); 198c4762a1bSJed Brown 1995f80ce2aSJacob Faibussowitsch CHKERRQ(VecRestoreArray(y2,&leafupdate)); 2005f80ce2aSJacob Faibussowitsch CHKERRQ(VecDestroy(&y2)); 201c4762a1bSJed Brown 2025f80ce2aSJacob Faibussowitsch CHKERRQ(VecRestoreArray(y,&leafdata)); 2035f80ce2aSJacob Faibussowitsch CHKERRQ(VecDestroy(&y)); 204c4762a1bSJed Brown 2055f80ce2aSJacob Faibussowitsch CHKERRQ(VecRestoreArray(x,&rootdata)); 2065f80ce2aSJacob Faibussowitsch CHKERRQ(VecDestroy(&x)); 207c4762a1bSJed Brown 2085f80ce2aSJacob Faibussowitsch CHKERRQ(PetscSFDestroy(&alltoallsf)); 209c4762a1bSJed Brown 210*b122ec5aSJacob Faibussowitsch CHKERRQ(PetscFinalize()); 211*b122ec5aSJacob Faibussowitsch return 0; 212c4762a1bSJed Brown } 213c4762a1bSJed Brown 214c4762a1bSJed Brown /*TEST 215c4762a1bSJed Brown 216c4762a1bSJed Brown test: 217c4762a1bSJed Brown # N=10 is divisible by nsize, to trigger Allgather/Gather in SF 218f424265bSStefano Zampini #MPI_Sendrecv_replace is broken with 20210400300 219f424265bSStefano Zampini requires: !defined(PETSC_HAVE_I_MPI_NUMVERSION) 220c4762a1bSJed Brown nsize: 2 221c4762a1bSJed Brown args: -op replace 222c4762a1bSJed Brown 223c4762a1bSJed Brown test: 224c4762a1bSJed Brown suffix: 2 225c4762a1bSJed Brown nsize: 2 226c4762a1bSJed Brown args: -op sum 227c4762a1bSJed Brown 228c4762a1bSJed Brown # N=10 is not divisible by nsize, to trigger Allgatherv/Gatherv in SF 229c4762a1bSJed Brown test: 230f424265bSStefano Zampini #MPI_Sendrecv_replace is broken with 20210400300 231f424265bSStefano Zampini requires: !defined(PETSC_HAVE_I_MPI_NUMVERSION) 232c4762a1bSJed Brown suffix: 3 233c4762a1bSJed Brown nsize: 3 234c4762a1bSJed Brown args: -op replace 235c4762a1bSJed Brown 236c4762a1bSJed Brown test: 237c4762a1bSJed Brown suffix: 4 238c4762a1bSJed Brown nsize: 3 239c4762a1bSJed Brown args: -op sum 240c4762a1bSJed Brown 241c4762a1bSJed Brown TEST*/ 242