12362add9SBarry Smith 2af0996ceSBarry Smith #include <petsc/private/isimpl.h> /*I "petscis.h" I*/ 3e8f14785SLisandro Dalcin #include <petsc/private/hashmapi.h> 40c312b8eSJed Brown #include <petscsf.h> 5665c2dedSJed Brown #include <petscviewer.h> 62362add9SBarry Smith 77087cfbeSBarry Smith PetscClassId IS_LTOGM_CLASSID; 8268a049cSStefano Zampini static PetscErrorCode ISLocalToGlobalMappingGetBlockInfo_Private(ISLocalToGlobalMapping,PetscInt*,PetscInt**,PetscInt**,PetscInt***); 98e58c17dSMatthew Knepley 10413f72f0SBarry Smith typedef struct { 11413f72f0SBarry Smith PetscInt *globals; 12413f72f0SBarry Smith } ISLocalToGlobalMapping_Basic; 13413f72f0SBarry Smith 14413f72f0SBarry Smith typedef struct { 15e8f14785SLisandro Dalcin PetscHMapI globalht; 16413f72f0SBarry Smith } ISLocalToGlobalMapping_Hash; 17413f72f0SBarry Smith 186528b96dSMatthew G. Knepley /*@C 196528b96dSMatthew G. Knepley ISGetPointRange - Returns a description of the points in an IS suitable for traversal 20413f72f0SBarry Smith 216528b96dSMatthew G. Knepley Not collective 226528b96dSMatthew G. Knepley 236528b96dSMatthew G. Knepley Input Parameter: 246528b96dSMatthew G. Knepley . pointIS - The IS object 256528b96dSMatthew G. Knepley 266528b96dSMatthew G. Knepley Output Parameters: 276528b96dSMatthew G. Knepley + pStart - The first index, see notes 286528b96dSMatthew G. Knepley . pEnd - One past the last index, see notes 296528b96dSMatthew G. Knepley - points - The indices, see notes 306528b96dSMatthew G. Knepley 316528b96dSMatthew G. Knepley Notes: 326528b96dSMatthew G. Knepley If the IS contains contiguous indices in an ISSTRIDE, then the indices are contained in [pStart, pEnd) and points = NULL. Otherwise, pStart = 0, pEnd = numIndices, and points is an array of the indices. This supports the following pattern 336528b96dSMatthew G. Knepley $ ISGetPointRange(is, &pStart, &pEnd, &points); 346528b96dSMatthew G. Knepley $ for (p = pStart; p < pEnd; ++p) { 356528b96dSMatthew G. Knepley $ const PetscInt point = points ? points[p] : p; 366528b96dSMatthew G. Knepley $ } 376528b96dSMatthew G. Knepley $ ISRestorePointRange(is, &pstart, &pEnd, &points); 386528b96dSMatthew G. Knepley 396528b96dSMatthew G. Knepley Level: intermediate 406528b96dSMatthew G. Knepley 416528b96dSMatthew G. Knepley .seealso: ISRestorePointRange(), ISGetPointSubrange(), ISGetIndices(), ISCreateStride() 426528b96dSMatthew G. Knepley @*/ 439305a4c7SMatthew G. Knepley PetscErrorCode ISGetPointRange(IS pointIS, PetscInt *pStart, PetscInt *pEnd, const PetscInt **points) 449305a4c7SMatthew G. Knepley { 459305a4c7SMatthew G. Knepley PetscInt numCells, step = 1; 469305a4c7SMatthew G. Knepley PetscBool isStride; 479305a4c7SMatthew G. Knepley PetscErrorCode ierr; 489305a4c7SMatthew G. Knepley 499305a4c7SMatthew G. Knepley PetscFunctionBeginHot; 509305a4c7SMatthew G. Knepley *pStart = 0; 519305a4c7SMatthew G. Knepley *points = NULL; 529305a4c7SMatthew G. Knepley ierr = ISGetLocalSize(pointIS, &numCells);CHKERRQ(ierr); 539305a4c7SMatthew G. Knepley ierr = PetscObjectTypeCompare((PetscObject) pointIS, ISSTRIDE, &isStride);CHKERRQ(ierr); 549305a4c7SMatthew G. Knepley if (isStride) {ierr = ISStrideGetInfo(pointIS, pStart, &step);CHKERRQ(ierr);} 559305a4c7SMatthew G. Knepley *pEnd = *pStart + numCells; 569305a4c7SMatthew G. Knepley if (!isStride || step != 1) {ierr = ISGetIndices(pointIS, points);CHKERRQ(ierr);} 579305a4c7SMatthew G. Knepley PetscFunctionReturn(0); 589305a4c7SMatthew G. Knepley } 599305a4c7SMatthew G. Knepley 606528b96dSMatthew G. Knepley /*@C 616528b96dSMatthew G. Knepley ISRestorePointRange - Destroys the traversal description 626528b96dSMatthew G. Knepley 636528b96dSMatthew G. Knepley Not collective 646528b96dSMatthew G. Knepley 656528b96dSMatthew G. Knepley Input Parameters: 666528b96dSMatthew G. Knepley + pointIS - The IS object 676528b96dSMatthew G. Knepley . pStart - The first index, from ISGetPointRange() 686528b96dSMatthew G. Knepley . pEnd - One past the last index, from ISGetPointRange() 696528b96dSMatthew G. Knepley - points - The indices, from ISGetPointRange() 706528b96dSMatthew G. Knepley 716528b96dSMatthew G. Knepley Notes: 726528b96dSMatthew G. Knepley If the IS contains contiguous indices in an ISSTRIDE, then the indices are contained in [pStart, pEnd) and points = NULL. Otherwise, pStart = 0, pEnd = numIndices, and points is an array of the indices. This supports the following pattern 736528b96dSMatthew G. Knepley $ ISGetPointRange(is, &pStart, &pEnd, &points); 746528b96dSMatthew G. Knepley $ for (p = pStart; p < pEnd; ++p) { 756528b96dSMatthew G. Knepley $ const PetscInt point = points ? points[p] : p; 766528b96dSMatthew G. Knepley $ } 776528b96dSMatthew G. Knepley $ ISRestorePointRange(is, &pstart, &pEnd, &points); 786528b96dSMatthew G. Knepley 796528b96dSMatthew G. Knepley Level: intermediate 806528b96dSMatthew G. Knepley 816528b96dSMatthew G. Knepley .seealso: ISGetPointRange(), ISGetPointSubrange(), ISGetIndices(), ISCreateStride() 826528b96dSMatthew G. Knepley @*/ 839305a4c7SMatthew G. Knepley PetscErrorCode ISRestorePointRange(IS pointIS, PetscInt *pStart, PetscInt *pEnd, const PetscInt **points) 849305a4c7SMatthew G. Knepley { 859305a4c7SMatthew G. Knepley PetscInt step = 1; 869305a4c7SMatthew G. Knepley PetscBool isStride; 879305a4c7SMatthew G. Knepley PetscErrorCode ierr; 889305a4c7SMatthew G. Knepley 899305a4c7SMatthew G. Knepley PetscFunctionBeginHot; 909305a4c7SMatthew G. Knepley ierr = PetscObjectTypeCompare((PetscObject) pointIS, ISSTRIDE, &isStride);CHKERRQ(ierr); 919305a4c7SMatthew G. Knepley if (isStride) {ierr = ISStrideGetInfo(pointIS, pStart, &step);CHKERRQ(ierr);} 929305a4c7SMatthew G. Knepley if (!isStride || step != 1) {ierr = ISGetIndices(pointIS, points);CHKERRQ(ierr);} 939305a4c7SMatthew G. Knepley PetscFunctionReturn(0); 949305a4c7SMatthew G. Knepley } 959305a4c7SMatthew G. Knepley 966528b96dSMatthew G. Knepley /*@C 976528b96dSMatthew G. Knepley ISGetPointSubrange - Configures the input IS to be a subrange for the traversal information given 986528b96dSMatthew G. Knepley 996528b96dSMatthew G. Knepley Not collective 1006528b96dSMatthew G. Knepley 1016528b96dSMatthew G. Knepley Input Parameters: 1026528b96dSMatthew G. Knepley + subpointIS - The IS object to be configured 1036528b96dSMatthew G. Knepley . pStar t - The first index of the subrange 1046528b96dSMatthew G. Knepley . pEnd - One past the last index for the subrange 1056528b96dSMatthew G. Knepley - points - The indices for the entire range, from ISGetPointRange() 1066528b96dSMatthew G. Knepley 1076528b96dSMatthew G. Knepley Output Parameters: 1086528b96dSMatthew G. Knepley . subpointIS - The IS object now configured to be a subrange 1096528b96dSMatthew G. Knepley 1106528b96dSMatthew G. Knepley Notes: 1116528b96dSMatthew G. Knepley The input IS will now respond properly to calls to ISGetPointRange() and return the subrange. 1126528b96dSMatthew G. Knepley 1136528b96dSMatthew G. Knepley Level: intermediate 1146528b96dSMatthew G. Knepley 1156528b96dSMatthew G. Knepley .seealso: ISGetPointRange(), ISRestorePointRange(), ISGetIndices(), ISCreateStride() 1166528b96dSMatthew G. Knepley @*/ 1179305a4c7SMatthew G. Knepley PetscErrorCode ISGetPointSubrange(IS subpointIS, PetscInt pStart, PetscInt pEnd, const PetscInt *points) 1189305a4c7SMatthew G. Knepley { 1199305a4c7SMatthew G. Knepley PetscErrorCode ierr; 1209305a4c7SMatthew G. Knepley 1219305a4c7SMatthew G. Knepley PetscFunctionBeginHot; 1229305a4c7SMatthew G. Knepley if (points) { 1239305a4c7SMatthew G. Knepley ierr = ISSetType(subpointIS, ISGENERAL);CHKERRQ(ierr); 1249305a4c7SMatthew G. Knepley ierr = ISGeneralSetIndices(subpointIS, pEnd-pStart, &points[pStart], PETSC_USE_POINTER);CHKERRQ(ierr); 1259305a4c7SMatthew G. Knepley } else { 1269305a4c7SMatthew G. Knepley ierr = ISSetType(subpointIS, ISSTRIDE);CHKERRQ(ierr); 1279305a4c7SMatthew G. Knepley ierr = ISStrideSetStride(subpointIS, pEnd-pStart, pStart, 1);CHKERRQ(ierr); 1289305a4c7SMatthew G. Knepley } 1299305a4c7SMatthew G. Knepley PetscFunctionReturn(0); 1309305a4c7SMatthew G. Knepley } 1319305a4c7SMatthew G. Knepley 132413f72f0SBarry Smith /* -----------------------------------------------------------------------------------------*/ 133413f72f0SBarry Smith 134413f72f0SBarry Smith /* 135413f72f0SBarry Smith Creates the global mapping information in the ISLocalToGlobalMapping structure 136413f72f0SBarry Smith 137413f72f0SBarry Smith If the user has not selected how to handle the global to local mapping then use HASH for "large" problems 138413f72f0SBarry Smith */ 139413f72f0SBarry Smith static PetscErrorCode ISGlobalToLocalMappingSetUp(ISLocalToGlobalMapping mapping) 140413f72f0SBarry Smith { 141413f72f0SBarry Smith PetscInt i,*idx = mapping->indices,n = mapping->n,end,start; 142413f72f0SBarry Smith PetscErrorCode ierr; 143413f72f0SBarry Smith 144413f72f0SBarry Smith PetscFunctionBegin; 145413f72f0SBarry Smith if (mapping->data) PetscFunctionReturn(0); 146413f72f0SBarry Smith end = 0; 147413f72f0SBarry Smith start = PETSC_MAX_INT; 148413f72f0SBarry Smith 149413f72f0SBarry Smith for (i=0; i<n; i++) { 150413f72f0SBarry Smith if (idx[i] < 0) continue; 151413f72f0SBarry Smith if (idx[i] < start) start = idx[i]; 152413f72f0SBarry Smith if (idx[i] > end) end = idx[i]; 153413f72f0SBarry Smith } 154413f72f0SBarry Smith if (start > end) {start = 0; end = -1;} 155413f72f0SBarry Smith mapping->globalstart = start; 156413f72f0SBarry Smith mapping->globalend = end; 157413f72f0SBarry Smith if (!((PetscObject)mapping)->type_name) { 158413f72f0SBarry Smith if ((end - start) > PetscMax(4*n,1000000)) { 1597f79407eSBarry Smith ierr = ISLocalToGlobalMappingSetType(mapping,ISLOCALTOGLOBALMAPPINGHASH);CHKERRQ(ierr); 160413f72f0SBarry Smith } else { 1617f79407eSBarry Smith ierr = ISLocalToGlobalMappingSetType(mapping,ISLOCALTOGLOBALMAPPINGBASIC);CHKERRQ(ierr); 162413f72f0SBarry Smith } 163413f72f0SBarry Smith } 164413f72f0SBarry Smith ierr = (*mapping->ops->globaltolocalmappingsetup)(mapping);CHKERRQ(ierr); 165413f72f0SBarry Smith PetscFunctionReturn(0); 166413f72f0SBarry Smith } 167413f72f0SBarry Smith 168413f72f0SBarry Smith static PetscErrorCode ISGlobalToLocalMappingSetUp_Basic(ISLocalToGlobalMapping mapping) 169413f72f0SBarry Smith { 170413f72f0SBarry Smith PetscErrorCode ierr; 171413f72f0SBarry Smith PetscInt i,*idx = mapping->indices,n = mapping->n,end,start,*globals; 172413f72f0SBarry Smith ISLocalToGlobalMapping_Basic *map; 173413f72f0SBarry Smith 174413f72f0SBarry Smith PetscFunctionBegin; 175413f72f0SBarry Smith start = mapping->globalstart; 176413f72f0SBarry Smith end = mapping->globalend; 177413f72f0SBarry Smith ierr = PetscNew(&map);CHKERRQ(ierr); 178413f72f0SBarry Smith ierr = PetscMalloc1(end-start+2,&globals);CHKERRQ(ierr); 179413f72f0SBarry Smith map->globals = globals; 180413f72f0SBarry Smith for (i=0; i<end-start+1; i++) globals[i] = -1; 181413f72f0SBarry Smith for (i=0; i<n; i++) { 182413f72f0SBarry Smith if (idx[i] < 0) continue; 183413f72f0SBarry Smith globals[idx[i] - start] = i; 184413f72f0SBarry Smith } 185413f72f0SBarry Smith mapping->data = (void*)map; 186413f72f0SBarry Smith ierr = PetscLogObjectMemory((PetscObject)mapping,(end-start+1)*sizeof(PetscInt));CHKERRQ(ierr); 187413f72f0SBarry Smith PetscFunctionReturn(0); 188413f72f0SBarry Smith } 189413f72f0SBarry Smith 190413f72f0SBarry Smith static PetscErrorCode ISGlobalToLocalMappingSetUp_Hash(ISLocalToGlobalMapping mapping) 191413f72f0SBarry Smith { 192413f72f0SBarry Smith PetscErrorCode ierr; 193413f72f0SBarry Smith PetscInt i,*idx = mapping->indices,n = mapping->n; 194413f72f0SBarry Smith ISLocalToGlobalMapping_Hash *map; 195413f72f0SBarry Smith 196413f72f0SBarry Smith PetscFunctionBegin; 197413f72f0SBarry Smith ierr = PetscNew(&map);CHKERRQ(ierr); 198e8f14785SLisandro Dalcin ierr = PetscHMapICreate(&map->globalht);CHKERRQ(ierr); 199413f72f0SBarry Smith for (i=0; i<n; i++) { 200413f72f0SBarry Smith if (idx[i] < 0) continue; 201e8f14785SLisandro Dalcin ierr = PetscHMapISet(map->globalht,idx[i],i);CHKERRQ(ierr); 202413f72f0SBarry Smith } 203413f72f0SBarry Smith mapping->data = (void*)map; 204413f72f0SBarry Smith ierr = PetscLogObjectMemory((PetscObject)mapping,2*n*sizeof(PetscInt));CHKERRQ(ierr); 205413f72f0SBarry Smith PetscFunctionReturn(0); 206413f72f0SBarry Smith } 207413f72f0SBarry Smith 208413f72f0SBarry Smith static PetscErrorCode ISLocalToGlobalMappingDestroy_Basic(ISLocalToGlobalMapping mapping) 209413f72f0SBarry Smith { 210413f72f0SBarry Smith PetscErrorCode ierr; 211413f72f0SBarry Smith ISLocalToGlobalMapping_Basic *map = (ISLocalToGlobalMapping_Basic *)mapping->data; 212413f72f0SBarry Smith 213413f72f0SBarry Smith PetscFunctionBegin; 214413f72f0SBarry Smith if (!map) PetscFunctionReturn(0); 215413f72f0SBarry Smith ierr = PetscFree(map->globals);CHKERRQ(ierr); 216413f72f0SBarry Smith ierr = PetscFree(mapping->data);CHKERRQ(ierr); 217413f72f0SBarry Smith PetscFunctionReturn(0); 218413f72f0SBarry Smith } 219413f72f0SBarry Smith 220413f72f0SBarry Smith static PetscErrorCode ISLocalToGlobalMappingDestroy_Hash(ISLocalToGlobalMapping mapping) 221413f72f0SBarry Smith { 222413f72f0SBarry Smith PetscErrorCode ierr; 223413f72f0SBarry Smith ISLocalToGlobalMapping_Hash *map = (ISLocalToGlobalMapping_Hash*)mapping->data; 224413f72f0SBarry Smith 225413f72f0SBarry Smith PetscFunctionBegin; 226413f72f0SBarry Smith if (!map) PetscFunctionReturn(0); 227e8f14785SLisandro Dalcin ierr = PetscHMapIDestroy(&map->globalht);CHKERRQ(ierr); 228413f72f0SBarry Smith ierr = PetscFree(mapping->data);CHKERRQ(ierr); 229413f72f0SBarry Smith PetscFunctionReturn(0); 230413f72f0SBarry Smith } 231413f72f0SBarry Smith 232413f72f0SBarry Smith #define GTOLTYPE _Basic 233413f72f0SBarry Smith #define GTOLNAME _Basic 234541bf97eSAdrian Croucher #define GTOLBS mapping->bs 235413f72f0SBarry Smith #define GTOL(g, local) do { \ 236413f72f0SBarry Smith local = map->globals[g/bs - start]; \ 2370040bde1SJunchao Zhang if (local >= 0) local = bs*local + (g % bs); \ 238413f72f0SBarry Smith } while (0) 239541bf97eSAdrian Croucher 240413f72f0SBarry Smith #include <../src/vec/is/utils/isltog.h> 241413f72f0SBarry Smith 242413f72f0SBarry Smith #define GTOLTYPE _Basic 243413f72f0SBarry Smith #define GTOLNAME Block_Basic 244541bf97eSAdrian Croucher #define GTOLBS 1 245413f72f0SBarry Smith #define GTOL(g, local) do { \ 246413f72f0SBarry Smith local = map->globals[g - start]; \ 247413f72f0SBarry Smith } while (0) 248413f72f0SBarry Smith #include <../src/vec/is/utils/isltog.h> 249413f72f0SBarry Smith 250413f72f0SBarry Smith #define GTOLTYPE _Hash 251413f72f0SBarry Smith #define GTOLNAME _Hash 252541bf97eSAdrian Croucher #define GTOLBS mapping->bs 253413f72f0SBarry Smith #define GTOL(g, local) do { \ 254e8f14785SLisandro Dalcin (void)PetscHMapIGet(map->globalht,g/bs,&local); \ 2550040bde1SJunchao Zhang if (local >= 0) local = bs*local + (g % bs); \ 256413f72f0SBarry Smith } while (0) 257413f72f0SBarry Smith #include <../src/vec/is/utils/isltog.h> 258413f72f0SBarry Smith 259413f72f0SBarry Smith #define GTOLTYPE _Hash 260413f72f0SBarry Smith #define GTOLNAME Block_Hash 261541bf97eSAdrian Croucher #define GTOLBS 1 262413f72f0SBarry Smith #define GTOL(g, local) do { \ 263e8f14785SLisandro Dalcin (void)PetscHMapIGet(map->globalht,g,&local); \ 264413f72f0SBarry Smith } while (0) 265413f72f0SBarry Smith #include <../src/vec/is/utils/isltog.h> 266413f72f0SBarry Smith 2676658fb44Sstefano_zampini /*@ 2686658fb44Sstefano_zampini ISLocalToGlobalMappingDuplicate - Duplicates the local to global mapping object 2696658fb44Sstefano_zampini 2706658fb44Sstefano_zampini Not Collective 2716658fb44Sstefano_zampini 2726658fb44Sstefano_zampini Input Parameter: 2736658fb44Sstefano_zampini . ltog - local to global mapping 2746658fb44Sstefano_zampini 2756658fb44Sstefano_zampini Output Parameter: 2766658fb44Sstefano_zampini . nltog - the duplicated local to global mapping 2776658fb44Sstefano_zampini 2786658fb44Sstefano_zampini Level: advanced 2796658fb44Sstefano_zampini 2806658fb44Sstefano_zampini .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreate() 2816658fb44Sstefano_zampini @*/ 2826658fb44Sstefano_zampini PetscErrorCode ISLocalToGlobalMappingDuplicate(ISLocalToGlobalMapping ltog,ISLocalToGlobalMapping* nltog) 2836658fb44Sstefano_zampini { 2846658fb44Sstefano_zampini PetscErrorCode ierr; 2856658fb44Sstefano_zampini 2866658fb44Sstefano_zampini PetscFunctionBegin; 2876658fb44Sstefano_zampini PetscValidHeaderSpecific(ltog,IS_LTOGM_CLASSID,1); 2886658fb44Sstefano_zampini ierr = ISLocalToGlobalMappingCreate(PetscObjectComm((PetscObject)ltog),ltog->bs,ltog->n,ltog->indices,PETSC_COPY_VALUES,nltog);CHKERRQ(ierr); 2896658fb44Sstefano_zampini PetscFunctionReturn(0); 2906658fb44Sstefano_zampini } 2916658fb44Sstefano_zampini 292565245c5SBarry Smith /*@ 293107e9a97SBarry Smith ISLocalToGlobalMappingGetSize - Gets the local size of a local to global mapping 2943b9aefa3SBarry Smith 2953b9aefa3SBarry Smith Not Collective 2963b9aefa3SBarry Smith 2973b9aefa3SBarry Smith Input Parameter: 2983b9aefa3SBarry Smith . ltog - local to global mapping 2993b9aefa3SBarry Smith 3003b9aefa3SBarry Smith Output Parameter: 301107e9a97SBarry Smith . n - the number of entries in the local mapping, ISLocalToGlobalMappingGetIndices() returns an array of this length 3023b9aefa3SBarry Smith 3033b9aefa3SBarry Smith Level: advanced 3043b9aefa3SBarry Smith 3053b9aefa3SBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreate() 3063b9aefa3SBarry Smith @*/ 3077087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingGetSize(ISLocalToGlobalMapping mapping,PetscInt *n) 3083b9aefa3SBarry Smith { 3093b9aefa3SBarry Smith PetscFunctionBegin; 3100700a824SBarry Smith PetscValidHeaderSpecific(mapping,IS_LTOGM_CLASSID,1); 3114482741eSBarry Smith PetscValidIntPointer(n,2); 312107e9a97SBarry Smith *n = mapping->bs*mapping->n; 3133b9aefa3SBarry Smith PetscFunctionReturn(0); 3143b9aefa3SBarry Smith } 3153b9aefa3SBarry Smith 3165a5d4f66SBarry Smith /*@C 317fe2efc57SMark ISLocalToGlobalMappingViewFromOptions - View from Options 318fe2efc57SMark 319fe2efc57SMark Collective on ISLocalToGlobalMapping 320fe2efc57SMark 321fe2efc57SMark Input Parameters: 322fe2efc57SMark + A - the local to global mapping object 323736c3998SJose E. Roman . obj - Optional object 324736c3998SJose E. Roman - name - command line option 325fe2efc57SMark 326fe2efc57SMark Level: intermediate 327fe2efc57SMark .seealso: ISLocalToGlobalMapping, ISLocalToGlobalMappingView, PetscObjectViewFromOptions(), ISLocalToGlobalMappingCreate() 328fe2efc57SMark @*/ 329fe2efc57SMark PetscErrorCode ISLocalToGlobalMappingViewFromOptions(ISLocalToGlobalMapping A,PetscObject obj,const char name[]) 330fe2efc57SMark { 331fe2efc57SMark PetscErrorCode ierr; 332fe2efc57SMark 333fe2efc57SMark PetscFunctionBegin; 334fe2efc57SMark PetscValidHeaderSpecific(A,IS_LTOGM_CLASSID,1); 335fe2efc57SMark ierr = PetscObjectViewFromOptions((PetscObject)A,obj,name);CHKERRQ(ierr); 336fe2efc57SMark PetscFunctionReturn(0); 337fe2efc57SMark } 338fe2efc57SMark 339fe2efc57SMark /*@C 3405a5d4f66SBarry Smith ISLocalToGlobalMappingView - View a local to global mapping 3415a5d4f66SBarry Smith 342b9cd556bSLois Curfman McInnes Not Collective 343b9cd556bSLois Curfman McInnes 3445a5d4f66SBarry Smith Input Parameters: 3453b9aefa3SBarry Smith + ltog - local to global mapping 3463b9aefa3SBarry Smith - viewer - viewer 3475a5d4f66SBarry Smith 348a997ad1aSLois Curfman McInnes Level: advanced 349a997ad1aSLois Curfman McInnes 3505a5d4f66SBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreate() 3515a5d4f66SBarry Smith @*/ 3527087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingView(ISLocalToGlobalMapping mapping,PetscViewer viewer) 3535a5d4f66SBarry Smith { 35432dcc486SBarry Smith PetscInt i; 35532dcc486SBarry Smith PetscMPIInt rank; 356ace3abfcSBarry Smith PetscBool iascii; 3576849ba73SBarry Smith PetscErrorCode ierr; 3585a5d4f66SBarry Smith 3595a5d4f66SBarry Smith PetscFunctionBegin; 3600700a824SBarry Smith PetscValidHeaderSpecific(mapping,IS_LTOGM_CLASSID,1); 3613050cee2SBarry Smith if (!viewer) { 362ce94432eSBarry Smith ierr = PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject)mapping),&viewer);CHKERRQ(ierr); 3633050cee2SBarry Smith } 3640700a824SBarry Smith PetscValidHeaderSpecific(viewer,PETSC_VIEWER_CLASSID,2); 3655a5d4f66SBarry Smith 366ffc4695bSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mapping),&rank);CHKERRMPI(ierr); 367251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 36832077d6dSBarry Smith if (iascii) { 36998c3331eSBarry Smith ierr = PetscObjectPrintClassNamePrefixType((PetscObject)mapping,viewer);CHKERRQ(ierr); 3701575c14dSBarry Smith ierr = PetscViewerASCIIPushSynchronized(viewer);CHKERRQ(ierr); 3715a5d4f66SBarry Smith for (i=0; i<mapping->n; i++) { 3727904a332SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] %D %D\n",rank,i,mapping->indices[i]);CHKERRQ(ierr); 3736831982aSBarry Smith } 374b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 3751575c14dSBarry Smith ierr = PetscViewerASCIIPopSynchronized(viewer);CHKERRQ(ierr); 3761575c14dSBarry Smith } 3775a5d4f66SBarry Smith PetscFunctionReturn(0); 3785a5d4f66SBarry Smith } 3795a5d4f66SBarry Smith 3801f428162SBarry Smith /*@ 3812bdab257SBarry Smith ISLocalToGlobalMappingCreateIS - Creates a mapping between a local (0 to n) 3822bdab257SBarry Smith ordering and a global parallel ordering. 3832bdab257SBarry Smith 3840f5bd95cSBarry Smith Not collective 385b9cd556bSLois Curfman McInnes 386a997ad1aSLois Curfman McInnes Input Parameter: 3878c03b21aSDmitry Karpeev . is - index set containing the global numbers for each local number 3882bdab257SBarry Smith 389a997ad1aSLois Curfman McInnes Output Parameter: 3902bdab257SBarry Smith . mapping - new mapping data structure 3912bdab257SBarry Smith 39295452b02SPatrick Sanan Notes: 39395452b02SPatrick Sanan the block size of the IS determines the block size of the mapping 394a997ad1aSLois Curfman McInnes Level: advanced 395a997ad1aSLois Curfman McInnes 3967e99dc12SLawrence Mitchell .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreate(), ISLocalToGlobalMappingSetFromOptions() 3972bdab257SBarry Smith @*/ 3987087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingCreateIS(IS is,ISLocalToGlobalMapping *mapping) 3992bdab257SBarry Smith { 4006849ba73SBarry Smith PetscErrorCode ierr; 4013bbf0e92SBarry Smith PetscInt n,bs; 4025d0c19d7SBarry Smith const PetscInt *indices; 4032bdab257SBarry Smith MPI_Comm comm; 4043bbf0e92SBarry Smith PetscBool isblock; 4053a40ed3dSBarry Smith 4063a40ed3dSBarry Smith PetscFunctionBegin; 4070700a824SBarry Smith PetscValidHeaderSpecific(is,IS_CLASSID,1); 4084482741eSBarry Smith PetscValidPointer(mapping,2); 4092bdab257SBarry Smith 4102bdab257SBarry Smith ierr = PetscObjectGetComm((PetscObject)is,&comm);CHKERRQ(ierr); 4113b9aefa3SBarry Smith ierr = ISGetLocalSize(is,&n);CHKERRQ(ierr); 4123bbf0e92SBarry Smith ierr = PetscObjectTypeCompare((PetscObject)is,ISBLOCK,&isblock);CHKERRQ(ierr); 4136006e8d2SBarry Smith if (!isblock) { 414f0413b6fSBarry Smith ierr = ISGetIndices(is,&indices);CHKERRQ(ierr); 415f0413b6fSBarry Smith ierr = ISLocalToGlobalMappingCreate(comm,1,n,indices,PETSC_COPY_VALUES,mapping);CHKERRQ(ierr); 4162bdab257SBarry Smith ierr = ISRestoreIndices(is,&indices);CHKERRQ(ierr); 4176006e8d2SBarry Smith } else { 4186006e8d2SBarry Smith ierr = ISGetBlockSize(is,&bs);CHKERRQ(ierr); 419f0413b6fSBarry Smith ierr = ISBlockGetIndices(is,&indices);CHKERRQ(ierr); 42028bc9809SBarry Smith ierr = ISLocalToGlobalMappingCreate(comm,bs,n/bs,indices,PETSC_COPY_VALUES,mapping);CHKERRQ(ierr); 421f0413b6fSBarry Smith ierr = ISBlockRestoreIndices(is,&indices);CHKERRQ(ierr); 4226006e8d2SBarry Smith } 4233a40ed3dSBarry Smith PetscFunctionReturn(0); 4242bdab257SBarry Smith } 4255a5d4f66SBarry Smith 426a4d96a55SJed Brown /*@C 427a4d96a55SJed Brown ISLocalToGlobalMappingCreateSF - Creates a mapping between a local (0 to n) 428a4d96a55SJed Brown ordering and a global parallel ordering. 429a4d96a55SJed Brown 430a4d96a55SJed Brown Collective 431a4d96a55SJed Brown 432a4d96a55SJed Brown Input Parameter: 433a4d96a55SJed Brown + sf - star forest mapping contiguous local indices to (rank, offset) 434a4d96a55SJed Brown - start - first global index on this process 435a4d96a55SJed Brown 436a4d96a55SJed Brown Output Parameter: 437a4d96a55SJed Brown . mapping - new mapping data structure 438a4d96a55SJed Brown 439a4d96a55SJed Brown Level: advanced 440a4d96a55SJed Brown 4417e99dc12SLawrence Mitchell .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreate(), ISLocalToGlobalMappingCreateIS(), ISLocalToGlobalMappingSetFromOptions() 442a4d96a55SJed Brown @*/ 443a4d96a55SJed Brown PetscErrorCode ISLocalToGlobalMappingCreateSF(PetscSF sf,PetscInt start,ISLocalToGlobalMapping *mapping) 444a4d96a55SJed Brown { 445a4d96a55SJed Brown PetscErrorCode ierr; 446a4d96a55SJed Brown PetscInt i,maxlocal,nroots,nleaves,*globals,*ltog; 447a4d96a55SJed Brown const PetscInt *ilocal; 448a4d96a55SJed Brown MPI_Comm comm; 449a4d96a55SJed Brown 450a4d96a55SJed Brown PetscFunctionBegin; 451a4d96a55SJed Brown PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 452a4d96a55SJed Brown PetscValidPointer(mapping,3); 453a4d96a55SJed Brown 454a4d96a55SJed Brown ierr = PetscObjectGetComm((PetscObject)sf,&comm);CHKERRQ(ierr); 4550298fd71SBarry Smith ierr = PetscSFGetGraph(sf,&nroots,&nleaves,&ilocal,NULL);CHKERRQ(ierr); 456f6e5521dSKarl Rupp if (ilocal) { 457f6e5521dSKarl Rupp for (i=0,maxlocal=0; i<nleaves; i++) maxlocal = PetscMax(maxlocal,ilocal[i]+1); 458f6e5521dSKarl Rupp } 459a4d96a55SJed Brown else maxlocal = nleaves; 460785e854fSJed Brown ierr = PetscMalloc1(nroots,&globals);CHKERRQ(ierr); 461785e854fSJed Brown ierr = PetscMalloc1(maxlocal,<og);CHKERRQ(ierr); 462a4d96a55SJed Brown for (i=0; i<nroots; i++) globals[i] = start + i; 463a4d96a55SJed Brown for (i=0; i<maxlocal; i++) ltog[i] = -1; 464ad227feaSJunchao Zhang ierr = PetscSFBcastBegin(sf,MPIU_INT,globals,ltog,MPI_REPLACE);CHKERRQ(ierr); 465ad227feaSJunchao Zhang ierr = PetscSFBcastEnd(sf,MPIU_INT,globals,ltog,MPI_REPLACE);CHKERRQ(ierr); 466f0413b6fSBarry Smith ierr = ISLocalToGlobalMappingCreate(comm,1,maxlocal,ltog,PETSC_OWN_POINTER,mapping);CHKERRQ(ierr); 467a4d96a55SJed Brown ierr = PetscFree(globals);CHKERRQ(ierr); 468a4d96a55SJed Brown PetscFunctionReturn(0); 469a4d96a55SJed Brown } 470b46b645bSBarry Smith 47163fa5c83Sstefano_zampini /*@ 47263fa5c83Sstefano_zampini ISLocalToGlobalMappingSetBlockSize - Sets the blocksize of the mapping 47363fa5c83Sstefano_zampini 47463fa5c83Sstefano_zampini Not collective 47563fa5c83Sstefano_zampini 47663fa5c83Sstefano_zampini Input Parameters: 477a2b725a8SWilliam Gropp + mapping - mapping data structure 478a2b725a8SWilliam Gropp - bs - the blocksize 47963fa5c83Sstefano_zampini 48063fa5c83Sstefano_zampini Level: advanced 48163fa5c83Sstefano_zampini 48263fa5c83Sstefano_zampini .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreateIS() 48363fa5c83Sstefano_zampini @*/ 48463fa5c83Sstefano_zampini PetscErrorCode ISLocalToGlobalMappingSetBlockSize(ISLocalToGlobalMapping mapping,PetscInt bs) 48563fa5c83Sstefano_zampini { 486a59f3c4dSstefano_zampini PetscInt *nid; 487a59f3c4dSstefano_zampini const PetscInt *oid; 488a59f3c4dSstefano_zampini PetscInt i,cn,on,obs,nn; 48963fa5c83Sstefano_zampini PetscErrorCode ierr; 49063fa5c83Sstefano_zampini 49163fa5c83Sstefano_zampini PetscFunctionBegin; 49263fa5c83Sstefano_zampini PetscValidHeaderSpecific(mapping,IS_LTOGM_CLASSID,1); 49363fa5c83Sstefano_zampini if (bs < 1) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Invalid block size %D",bs); 49463fa5c83Sstefano_zampini if (bs == mapping->bs) PetscFunctionReturn(0); 49563fa5c83Sstefano_zampini on = mapping->n; 49663fa5c83Sstefano_zampini obs = mapping->bs; 49763fa5c83Sstefano_zampini oid = mapping->indices; 49863fa5c83Sstefano_zampini nn = (on*obs)/bs; 49963fa5c83Sstefano_zampini if ((on*obs)%bs) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Block size %D is inconsistent with block size %D and number of block indices %D",bs,obs,on); 500a59f3c4dSstefano_zampini 50163fa5c83Sstefano_zampini ierr = PetscMalloc1(nn,&nid);CHKERRQ(ierr); 502a59f3c4dSstefano_zampini ierr = ISLocalToGlobalMappingGetIndices(mapping,&oid);CHKERRQ(ierr); 503a59f3c4dSstefano_zampini for (i=0;i<nn;i++) { 504a59f3c4dSstefano_zampini PetscInt j; 505a59f3c4dSstefano_zampini for (j=0,cn=0;j<bs-1;j++) { 506a59f3c4dSstefano_zampini if (oid[i*bs+j] < 0) { cn++; continue; } 507a59f3c4dSstefano_zampini if (oid[i*bs+j] != oid[i*bs+j+1]-1) SETERRQ4(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Block sizes %D and %D are incompatible with the block indices: non consecutive indices %D %D",bs,obs,oid[i*bs+j],oid[i*bs+j+1]); 508a59f3c4dSstefano_zampini } 509a59f3c4dSstefano_zampini if (oid[i*bs+j] < 0) cn++; 5108b7cb0e6Sstefano_zampini if (cn) { 511a59f3c4dSstefano_zampini if (cn != bs) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Block sizes %D and %D are incompatible with the block indices: invalid number of negative entries in block %D",bs,obs,cn); 512a59f3c4dSstefano_zampini nid[i] = -1; 5138b7cb0e6Sstefano_zampini } else { 514a59f3c4dSstefano_zampini nid[i] = oid[i*bs]/bs; 51563fa5c83Sstefano_zampini } 51663fa5c83Sstefano_zampini } 517a59f3c4dSstefano_zampini ierr = ISLocalToGlobalMappingRestoreIndices(mapping,&oid);CHKERRQ(ierr); 518a59f3c4dSstefano_zampini 51963fa5c83Sstefano_zampini mapping->n = nn; 52063fa5c83Sstefano_zampini mapping->bs = bs; 52163fa5c83Sstefano_zampini ierr = PetscFree(mapping->indices);CHKERRQ(ierr); 52263fa5c83Sstefano_zampini mapping->indices = nid; 523c9345713Sstefano_zampini mapping->globalstart = 0; 524c9345713Sstefano_zampini mapping->globalend = 0; 5251bd0b88eSStefano Zampini 5261bd0b88eSStefano Zampini /* reset the cached information */ 5271bd0b88eSStefano Zampini ierr = PetscFree(mapping->info_procs);CHKERRQ(ierr); 5281bd0b88eSStefano Zampini ierr = PetscFree(mapping->info_numprocs);CHKERRQ(ierr); 5291bd0b88eSStefano Zampini if (mapping->info_indices) { 5301bd0b88eSStefano Zampini PetscInt i; 5311bd0b88eSStefano Zampini 5321bd0b88eSStefano Zampini ierr = PetscFree((mapping->info_indices)[0]);CHKERRQ(ierr); 5331bd0b88eSStefano Zampini for (i=1; i<mapping->info_nproc; i++) { 5341bd0b88eSStefano Zampini ierr = PetscFree(mapping->info_indices[i]);CHKERRQ(ierr); 5351bd0b88eSStefano Zampini } 5361bd0b88eSStefano Zampini ierr = PetscFree(mapping->info_indices);CHKERRQ(ierr); 5371bd0b88eSStefano Zampini } 5381bd0b88eSStefano Zampini mapping->info_cached = PETSC_FALSE; 5391bd0b88eSStefano Zampini 540413f72f0SBarry Smith if (mapping->ops->destroy) { 541413f72f0SBarry Smith ierr = (*mapping->ops->destroy)(mapping);CHKERRQ(ierr); 542413f72f0SBarry Smith } 54363fa5c83Sstefano_zampini PetscFunctionReturn(0); 54463fa5c83Sstefano_zampini } 54563fa5c83Sstefano_zampini 54645b6f7e9SBarry Smith /*@ 54745b6f7e9SBarry Smith ISLocalToGlobalMappingGetBlockSize - Gets the blocksize of the mapping 54845b6f7e9SBarry Smith ordering and a global parallel ordering. 54945b6f7e9SBarry Smith 55045b6f7e9SBarry Smith Not Collective 55145b6f7e9SBarry Smith 55245b6f7e9SBarry Smith Input Parameters: 55345b6f7e9SBarry Smith . mapping - mapping data structure 55445b6f7e9SBarry Smith 55545b6f7e9SBarry Smith Output Parameter: 55645b6f7e9SBarry Smith . bs - the blocksize 55745b6f7e9SBarry Smith 55845b6f7e9SBarry Smith Level: advanced 55945b6f7e9SBarry Smith 56045b6f7e9SBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreateIS() 56145b6f7e9SBarry Smith @*/ 56245b6f7e9SBarry Smith PetscErrorCode ISLocalToGlobalMappingGetBlockSize(ISLocalToGlobalMapping mapping,PetscInt *bs) 56345b6f7e9SBarry Smith { 56445b6f7e9SBarry Smith PetscFunctionBegin; 565cbc1caf0SMatthew G. Knepley PetscValidHeaderSpecific(mapping,IS_LTOGM_CLASSID,1); 56645b6f7e9SBarry Smith *bs = mapping->bs; 56745b6f7e9SBarry Smith PetscFunctionReturn(0); 56845b6f7e9SBarry Smith } 56945b6f7e9SBarry Smith 570ba5bb76aSSatish Balay /*@ 57190f02eecSBarry Smith ISLocalToGlobalMappingCreate - Creates a mapping between a local (0 to n) 57290f02eecSBarry Smith ordering and a global parallel ordering. 5732362add9SBarry Smith 57489d82c54SBarry Smith Not Collective, but communicator may have more than one process 575b9cd556bSLois Curfman McInnes 5762362add9SBarry Smith Input Parameters: 57789d82c54SBarry Smith + comm - MPI communicator 578f0413b6fSBarry Smith . bs - the block size 57928bc9809SBarry Smith . n - the number of local elements divided by the block size, or equivalently the number of block indices 58028bc9809SBarry Smith . indices - the global index for each local element, these do not need to be in increasing order (sorted), these values should not be scaled (i.e. multiplied) by the blocksize bs 581d5ad8652SBarry Smith - mode - see PetscCopyMode 5822362add9SBarry Smith 583a997ad1aSLois Curfman McInnes Output Parameter: 58490f02eecSBarry Smith . mapping - new mapping data structure 5852362add9SBarry Smith 58695452b02SPatrick Sanan Notes: 58795452b02SPatrick Sanan There is one integer value in indices per block and it represents the actual indices bs*idx + j, where j=0,..,bs-1 588413f72f0SBarry Smith 5899a7b7924SJed Brown For "small" problems when using ISGlobalToLocalMappingApply() and ISGlobalToLocalMappingApplyBlock(), the ISLocalToGlobalMappingType of ISLOCALTOGLOBALMAPPINGBASIC will be used; 590413f72f0SBarry Smith this uses more memory but is faster; this approach is not scalable for extremely large mappings. For large problems ISLOCALTOGLOBALMAPPINGHASH is used, this is scalable. 591413f72f0SBarry Smith Use ISLocalToGlobalMappingSetType() or call ISLocalToGlobalMappingSetFromOptions() with the option -islocaltoglobalmapping_type <basic,hash> to control which is used. 592413f72f0SBarry Smith 593a997ad1aSLois Curfman McInnes Level: advanced 594a997ad1aSLois Curfman McInnes 595413f72f0SBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreateIS(), ISLocalToGlobalMappingSetFromOptions(), ISLOCALTOGLOBALMAPPINGBASIC, ISLOCALTOGLOBALMAPPINGHASH 596413f72f0SBarry Smith ISLocalToGlobalMappingSetType(), ISLocalToGlobalMappingType 5972362add9SBarry Smith @*/ 59860c7cefcSBarry Smith PetscErrorCode ISLocalToGlobalMappingCreate(MPI_Comm comm,PetscInt bs,PetscInt n,const PetscInt indices[],PetscCopyMode mode,ISLocalToGlobalMapping *mapping) 5992362add9SBarry Smith { 6006849ba73SBarry Smith PetscErrorCode ierr; 60132dcc486SBarry Smith PetscInt *in; 602b46b645bSBarry Smith 603b46b645bSBarry Smith PetscFunctionBegin; 604*064a246eSJacob Faibussowitsch if (n) PetscValidIntPointer(indices,4); 605*064a246eSJacob Faibussowitsch PetscValidPointer(mapping,6); 606b46b645bSBarry Smith 6070298fd71SBarry Smith *mapping = NULL; 608607a6623SBarry Smith ierr = ISInitializePackage();CHKERRQ(ierr); 6092362add9SBarry Smith 61073107ff1SLisandro Dalcin ierr = PetscHeaderCreate(*mapping,IS_LTOGM_CLASSID,"ISLocalToGlobalMapping","Local to global mapping","IS", 61160c7cefcSBarry Smith comm,ISLocalToGlobalMappingDestroy,ISLocalToGlobalMappingView);CHKERRQ(ierr); 612d4bb536fSBarry Smith (*mapping)->n = n; 613f0413b6fSBarry Smith (*mapping)->bs = bs; 614268a049cSStefano Zampini (*mapping)->info_cached = PETSC_FALSE; 615268a049cSStefano Zampini (*mapping)->info_free = PETSC_FALSE; 616268a049cSStefano Zampini (*mapping)->info_procs = NULL; 617268a049cSStefano Zampini (*mapping)->info_numprocs = NULL; 618268a049cSStefano Zampini (*mapping)->info_indices = NULL; 6191bd0b88eSStefano Zampini (*mapping)->info_nodec = NULL; 6201bd0b88eSStefano Zampini (*mapping)->info_nodei = NULL; 621413f72f0SBarry Smith 622413f72f0SBarry Smith (*mapping)->ops->globaltolocalmappingapply = NULL; 623413f72f0SBarry Smith (*mapping)->ops->globaltolocalmappingapplyblock = NULL; 624413f72f0SBarry Smith (*mapping)->ops->destroy = NULL; 625d5ad8652SBarry Smith if (mode == PETSC_COPY_VALUES) { 626785e854fSJed Brown ierr = PetscMalloc1(n,&in);CHKERRQ(ierr); 627580bdb30SBarry Smith ierr = PetscArraycpy(in,indices,n);CHKERRQ(ierr); 628d5ad8652SBarry Smith (*mapping)->indices = in; 6296389a1a1SBarry Smith ierr = PetscLogObjectMemory((PetscObject)*mapping,n*sizeof(PetscInt));CHKERRQ(ierr); 6306389a1a1SBarry Smith } else if (mode == PETSC_OWN_POINTER) { 6316389a1a1SBarry Smith (*mapping)->indices = (PetscInt*)indices; 6326389a1a1SBarry Smith ierr = PetscLogObjectMemory((PetscObject)*mapping,n*sizeof(PetscInt));CHKERRQ(ierr); 6336389a1a1SBarry Smith } 63460c7cefcSBarry Smith else SETERRQ(comm,PETSC_ERR_SUP,"Cannot currently use PETSC_USE_POINTER"); 6353a40ed3dSBarry Smith PetscFunctionReturn(0); 6362362add9SBarry Smith } 6372362add9SBarry Smith 638413f72f0SBarry Smith PetscFunctionList ISLocalToGlobalMappingList = NULL; 639413f72f0SBarry Smith 640413f72f0SBarry Smith 64190f02eecSBarry Smith /*@ 6427e99dc12SLawrence Mitchell ISLocalToGlobalMappingSetFromOptions - Set mapping options from the options database. 6437e99dc12SLawrence Mitchell 6447e99dc12SLawrence Mitchell Not collective 6457e99dc12SLawrence Mitchell 6467e99dc12SLawrence Mitchell Input Parameters: 6477e99dc12SLawrence Mitchell . mapping - mapping data structure 6487e99dc12SLawrence Mitchell 6497e99dc12SLawrence Mitchell Level: advanced 6507e99dc12SLawrence Mitchell 6517e99dc12SLawrence Mitchell @*/ 6527e99dc12SLawrence Mitchell PetscErrorCode ISLocalToGlobalMappingSetFromOptions(ISLocalToGlobalMapping mapping) 6537e99dc12SLawrence Mitchell { 6547e99dc12SLawrence Mitchell PetscErrorCode ierr; 655413f72f0SBarry Smith char type[256]; 656413f72f0SBarry Smith ISLocalToGlobalMappingType defaulttype = "Not set"; 6577e99dc12SLawrence Mitchell PetscBool flg; 6587e99dc12SLawrence Mitchell 6597e99dc12SLawrence Mitchell PetscFunctionBegin; 6607e99dc12SLawrence Mitchell PetscValidHeaderSpecific(mapping,IS_LTOGM_CLASSID,1); 661413f72f0SBarry Smith ierr = ISLocalToGlobalMappingRegisterAll();CHKERRQ(ierr); 6627e99dc12SLawrence Mitchell ierr = PetscObjectOptionsBegin((PetscObject)mapping);CHKERRQ(ierr); 663413f72f0SBarry Smith ierr = PetscOptionsFList("-islocaltoglobalmapping_type","ISLocalToGlobalMapping method","ISLocalToGlobalMappingSetType",ISLocalToGlobalMappingList,(char*)(((PetscObject)mapping)->type_name) ? ((PetscObject)mapping)->type_name : defaulttype,type,256,&flg);CHKERRQ(ierr); 664413f72f0SBarry Smith if (flg) { 665413f72f0SBarry Smith ierr = ISLocalToGlobalMappingSetType(mapping,type);CHKERRQ(ierr); 666413f72f0SBarry Smith } 6677e99dc12SLawrence Mitchell ierr = PetscOptionsEnd();CHKERRQ(ierr); 6687e99dc12SLawrence Mitchell PetscFunctionReturn(0); 6697e99dc12SLawrence Mitchell } 6707e99dc12SLawrence Mitchell 6717e99dc12SLawrence Mitchell /*@ 67290f02eecSBarry Smith ISLocalToGlobalMappingDestroy - Destroys a mapping between a local (0 to n) 67390f02eecSBarry Smith ordering and a global parallel ordering. 67490f02eecSBarry Smith 6750f5bd95cSBarry Smith Note Collective 676b9cd556bSLois Curfman McInnes 67790f02eecSBarry Smith Input Parameters: 67890f02eecSBarry Smith . mapping - mapping data structure 67990f02eecSBarry Smith 680a997ad1aSLois Curfman McInnes Level: advanced 681a997ad1aSLois Curfman McInnes 6823acfe500SLois Curfman McInnes .seealso: ISLocalToGlobalMappingCreate() 68390f02eecSBarry Smith @*/ 6846bf464f9SBarry Smith PetscErrorCode ISLocalToGlobalMappingDestroy(ISLocalToGlobalMapping *mapping) 68590f02eecSBarry Smith { 686dfbe8321SBarry Smith PetscErrorCode ierr; 6875fd66863SKarl Rupp 6883a40ed3dSBarry Smith PetscFunctionBegin; 6896bf464f9SBarry Smith if (!*mapping) PetscFunctionReturn(0); 6906bf464f9SBarry Smith PetscValidHeaderSpecific((*mapping),IS_LTOGM_CLASSID,1); 6914c8fdceaSLisandro Dalcin if (--((PetscObject)(*mapping))->refct > 0) {*mapping = NULL;PetscFunctionReturn(0);} 6926bf464f9SBarry Smith ierr = PetscFree((*mapping)->indices);CHKERRQ(ierr); 693268a049cSStefano Zampini ierr = PetscFree((*mapping)->info_procs);CHKERRQ(ierr); 694268a049cSStefano Zampini ierr = PetscFree((*mapping)->info_numprocs);CHKERRQ(ierr); 695268a049cSStefano Zampini if ((*mapping)->info_indices) { 696268a049cSStefano Zampini PetscInt i; 697268a049cSStefano Zampini 698268a049cSStefano Zampini ierr = PetscFree(((*mapping)->info_indices)[0]);CHKERRQ(ierr); 699268a049cSStefano Zampini for (i=1; i<(*mapping)->info_nproc; i++) { 700268a049cSStefano Zampini ierr = PetscFree(((*mapping)->info_indices)[i]);CHKERRQ(ierr); 701268a049cSStefano Zampini } 702268a049cSStefano Zampini ierr = PetscFree((*mapping)->info_indices);CHKERRQ(ierr); 703268a049cSStefano Zampini } 7041bd0b88eSStefano Zampini if ((*mapping)->info_nodei) { 7051bd0b88eSStefano Zampini ierr = PetscFree(((*mapping)->info_nodei)[0]);CHKERRQ(ierr); 7061bd0b88eSStefano Zampini } 707071fcb05SBarry Smith ierr = PetscFree2((*mapping)->info_nodec,(*mapping)->info_nodei);CHKERRQ(ierr); 708413f72f0SBarry Smith if ((*mapping)->ops->destroy) { 709413f72f0SBarry Smith ierr = (*(*mapping)->ops->destroy)(*mapping);CHKERRQ(ierr); 710413f72f0SBarry Smith } 711d38fa0fbSBarry Smith ierr = PetscHeaderDestroy(mapping);CHKERRQ(ierr); 7124c8fdceaSLisandro Dalcin *mapping = NULL; 7133a40ed3dSBarry Smith PetscFunctionReturn(0); 71490f02eecSBarry Smith } 71590f02eecSBarry Smith 71690f02eecSBarry Smith /*@ 7173acfe500SLois Curfman McInnes ISLocalToGlobalMappingApplyIS - Creates from an IS in the local numbering 7183acfe500SLois Curfman McInnes a new index set using the global numbering defined in an ISLocalToGlobalMapping 7193acfe500SLois Curfman McInnes context. 72090f02eecSBarry Smith 7214cb36875SStefano Zampini Collective on is 722b9cd556bSLois Curfman McInnes 72390f02eecSBarry Smith Input Parameters: 724b9cd556bSLois Curfman McInnes + mapping - mapping between local and global numbering 725b9cd556bSLois Curfman McInnes - is - index set in local numbering 72690f02eecSBarry Smith 72790f02eecSBarry Smith Output Parameters: 72890f02eecSBarry Smith . newis - index set in global numbering 72990f02eecSBarry Smith 7304cb36875SStefano Zampini Notes: 7314cb36875SStefano Zampini The output IS will have the same communicator of the input IS. 7324cb36875SStefano Zampini 733a997ad1aSLois Curfman McInnes Level: advanced 734a997ad1aSLois Curfman McInnes 73590f02eecSBarry Smith .seealso: ISLocalToGlobalMappingApply(), ISLocalToGlobalMappingCreate(), 736d4bb536fSBarry Smith ISLocalToGlobalMappingDestroy(), ISGlobalToLocalMappingApply() 73790f02eecSBarry Smith @*/ 7387087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingApplyIS(ISLocalToGlobalMapping mapping,IS is,IS *newis) 73990f02eecSBarry Smith { 7406849ba73SBarry Smith PetscErrorCode ierr; 741e24637baSBarry Smith PetscInt n,*idxout; 7425d0c19d7SBarry Smith const PetscInt *idxin; 7433a40ed3dSBarry Smith 7443a40ed3dSBarry Smith PetscFunctionBegin; 7450700a824SBarry Smith PetscValidHeaderSpecific(mapping,IS_LTOGM_CLASSID,1); 7460700a824SBarry Smith PetscValidHeaderSpecific(is,IS_CLASSID,2); 7474482741eSBarry Smith PetscValidPointer(newis,3); 74890f02eecSBarry Smith 7493b9aefa3SBarry Smith ierr = ISGetLocalSize(is,&n);CHKERRQ(ierr); 75090f02eecSBarry Smith ierr = ISGetIndices(is,&idxin);CHKERRQ(ierr); 751785e854fSJed Brown ierr = PetscMalloc1(n,&idxout);CHKERRQ(ierr); 752e24637baSBarry Smith ierr = ISLocalToGlobalMappingApply(mapping,n,idxin,idxout);CHKERRQ(ierr); 7533b9aefa3SBarry Smith ierr = ISRestoreIndices(is,&idxin);CHKERRQ(ierr); 754543f3098SMatthew G. Knepley ierr = ISCreateGeneral(PetscObjectComm((PetscObject)is),n,idxout,PETSC_OWN_POINTER,newis);CHKERRQ(ierr); 7553a40ed3dSBarry Smith PetscFunctionReturn(0); 75690f02eecSBarry Smith } 75790f02eecSBarry Smith 758b89cb25eSSatish Balay /*@ 7593acfe500SLois Curfman McInnes ISLocalToGlobalMappingApply - Takes a list of integers in a local numbering 7603acfe500SLois Curfman McInnes and converts them to the global numbering. 76190f02eecSBarry Smith 762b9cd556bSLois Curfman McInnes Not collective 763b9cd556bSLois Curfman McInnes 764bb25748dSBarry Smith Input Parameters: 765b9cd556bSLois Curfman McInnes + mapping - the local to global mapping context 766bb25748dSBarry Smith . N - number of integers 767b9cd556bSLois Curfman McInnes - in - input indices in local numbering 768bb25748dSBarry Smith 769bb25748dSBarry Smith Output Parameter: 770bb25748dSBarry Smith . out - indices in global numbering 771bb25748dSBarry Smith 772b9cd556bSLois Curfman McInnes Notes: 773b9cd556bSLois Curfman McInnes The in and out array parameters may be identical. 774d4bb536fSBarry Smith 775a997ad1aSLois Curfman McInnes Level: advanced 776a997ad1aSLois Curfman McInnes 77745b6f7e9SBarry Smith .seealso: ISLocalToGlobalMappingApplyBlock(), ISLocalToGlobalMappingCreate(),ISLocalToGlobalMappingDestroy(), 7780752156aSBarry Smith ISLocalToGlobalMappingApplyIS(),AOCreateBasic(),AOApplicationToPetsc(), 779d4bb536fSBarry Smith AOPetscToApplication(), ISGlobalToLocalMappingApply() 780bb25748dSBarry Smith 781afcb2eb5SJed Brown @*/ 782afcb2eb5SJed Brown PetscErrorCode ISLocalToGlobalMappingApply(ISLocalToGlobalMapping mapping,PetscInt N,const PetscInt in[],PetscInt out[]) 783afcb2eb5SJed Brown { 784cbc1caf0SMatthew G. Knepley PetscInt i,bs,Nmax; 78545b6f7e9SBarry Smith 78645b6f7e9SBarry Smith PetscFunctionBegin; 787cbc1caf0SMatthew G. Knepley PetscValidHeaderSpecific(mapping,IS_LTOGM_CLASSID,1); 788cbc1caf0SMatthew G. Knepley bs = mapping->bs; 789cbc1caf0SMatthew G. Knepley Nmax = bs*mapping->n; 79045b6f7e9SBarry Smith if (bs == 1) { 791cbc1caf0SMatthew G. Knepley const PetscInt *idx = mapping->indices; 79245b6f7e9SBarry Smith for (i=0; i<N; i++) { 79345b6f7e9SBarry Smith if (in[i] < 0) { 79445b6f7e9SBarry Smith out[i] = in[i]; 79545b6f7e9SBarry Smith continue; 79645b6f7e9SBarry Smith } 797e24637baSBarry Smith if (in[i] >= Nmax) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local index %D too large %D (max) at %D",in[i],Nmax-1,i); 79845b6f7e9SBarry Smith out[i] = idx[in[i]]; 79945b6f7e9SBarry Smith } 80045b6f7e9SBarry Smith } else { 801cbc1caf0SMatthew G. Knepley const PetscInt *idx = mapping->indices; 80245b6f7e9SBarry Smith for (i=0; i<N; i++) { 80345b6f7e9SBarry Smith if (in[i] < 0) { 80445b6f7e9SBarry Smith out[i] = in[i]; 80545b6f7e9SBarry Smith continue; 80645b6f7e9SBarry Smith } 807e24637baSBarry Smith if (in[i] >= Nmax) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local index %D too large %D (max) at %D",in[i],Nmax-1,i); 80845b6f7e9SBarry Smith out[i] = idx[in[i]/bs]*bs + (in[i] % bs); 80945b6f7e9SBarry Smith } 81045b6f7e9SBarry Smith } 81145b6f7e9SBarry Smith PetscFunctionReturn(0); 81245b6f7e9SBarry Smith } 81345b6f7e9SBarry Smith 81445b6f7e9SBarry Smith /*@ 8156006e8d2SBarry Smith ISLocalToGlobalMappingApplyBlock - Takes a list of integers in a local block numbering and converts them to the global block numbering 81645b6f7e9SBarry Smith 81745b6f7e9SBarry Smith Not collective 81845b6f7e9SBarry Smith 81945b6f7e9SBarry Smith Input Parameters: 82045b6f7e9SBarry Smith + mapping - the local to global mapping context 82145b6f7e9SBarry Smith . N - number of integers 8226006e8d2SBarry Smith - in - input indices in local block numbering 82345b6f7e9SBarry Smith 82445b6f7e9SBarry Smith Output Parameter: 8256006e8d2SBarry Smith . out - indices in global block numbering 82645b6f7e9SBarry Smith 82745b6f7e9SBarry Smith Notes: 82845b6f7e9SBarry Smith The in and out array parameters may be identical. 82945b6f7e9SBarry Smith 8306006e8d2SBarry Smith Example: 8316006e8d2SBarry Smith If the index values are {0,1,6,7} set with a call to ISLocalToGlobalMappingCreate(PETSC_COMM_SELF,2,2,{0,3}) then the mapping applied to 0 8326006e8d2SBarry Smith (the first block) would produce 0 and the mapping applied to 1 (the second block) would produce 3. 8336006e8d2SBarry Smith 83445b6f7e9SBarry Smith Level: advanced 83545b6f7e9SBarry Smith 83645b6f7e9SBarry Smith .seealso: ISLocalToGlobalMappingApply(), ISLocalToGlobalMappingCreate(),ISLocalToGlobalMappingDestroy(), 83745b6f7e9SBarry Smith ISLocalToGlobalMappingApplyIS(),AOCreateBasic(),AOApplicationToPetsc(), 83845b6f7e9SBarry Smith AOPetscToApplication(), ISGlobalToLocalMappingApply() 83945b6f7e9SBarry Smith 84045b6f7e9SBarry Smith @*/ 84145b6f7e9SBarry Smith PetscErrorCode ISLocalToGlobalMappingApplyBlock(ISLocalToGlobalMapping mapping,PetscInt N,const PetscInt in[],PetscInt out[]) 84245b6f7e9SBarry Smith { 843cbc1caf0SMatthew G. Knepley 844cbc1caf0SMatthew G. Knepley PetscFunctionBegin; 845cbc1caf0SMatthew G. Knepley PetscValidHeaderSpecific(mapping,IS_LTOGM_CLASSID,1); 846cbc1caf0SMatthew G. Knepley { 847afcb2eb5SJed Brown PetscInt i,Nmax = mapping->n; 848afcb2eb5SJed Brown const PetscInt *idx = mapping->indices; 849d4bb536fSBarry Smith 850afcb2eb5SJed Brown for (i=0; i<N; i++) { 851afcb2eb5SJed Brown if (in[i] < 0) { 852afcb2eb5SJed Brown out[i] = in[i]; 853afcb2eb5SJed Brown continue; 854afcb2eb5SJed Brown } 855e24637baSBarry Smith if (in[i] >= Nmax) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local block index %D too large %D (max) at %D",in[i],Nmax-1,i); 856afcb2eb5SJed Brown out[i] = idx[in[i]]; 857afcb2eb5SJed Brown } 858cbc1caf0SMatthew G. Knepley } 859afcb2eb5SJed Brown PetscFunctionReturn(0); 860afcb2eb5SJed Brown } 861d4bb536fSBarry Smith 8627e99dc12SLawrence Mitchell /*@ 863a997ad1aSLois Curfman McInnes ISGlobalToLocalMappingApply - Provides the local numbering for a list of integers 864a997ad1aSLois Curfman McInnes specified with a global numbering. 865d4bb536fSBarry Smith 866b9cd556bSLois Curfman McInnes Not collective 867b9cd556bSLois Curfman McInnes 868d4bb536fSBarry Smith Input Parameters: 869b9cd556bSLois Curfman McInnes + mapping - mapping between local and global numbering 8700040bde1SJunchao Zhang . type - IS_GTOLM_MASK - maps global indices with no local value to -1 in the output list (i.e., mask them) 871d4bb536fSBarry Smith IS_GTOLM_DROP - drops the indices with no local value from the output list 872d4bb536fSBarry Smith . n - number of global indices to map 873b9cd556bSLois Curfman McInnes - idx - global indices to map 874d4bb536fSBarry Smith 875d4bb536fSBarry Smith Output Parameters: 876b9cd556bSLois Curfman McInnes + nout - number of indices in output array (if type == IS_GTOLM_MASK then nout = n) 877b9cd556bSLois Curfman McInnes - idxout - local index of each global index, one must pass in an array long enough 878e182c471SBarry Smith to hold all the indices. You can call ISGlobalToLocalMappingApply() with 8790298fd71SBarry Smith idxout == NULL to determine the required length (returned in nout) 880e182c471SBarry Smith and then allocate the required space and call ISGlobalToLocalMappingApply() 881e182c471SBarry Smith a second time to set the values. 882d4bb536fSBarry Smith 883b9cd556bSLois Curfman McInnes Notes: 8840298fd71SBarry Smith Either nout or idxout may be NULL. idx and idxout may be identical. 885d4bb536fSBarry Smith 8869a7b7924SJed Brown For "small" problems when using ISGlobalToLocalMappingApply() and ISGlobalToLocalMappingApplyBlock(), the ISLocalToGlobalMappingType of ISLOCALTOGLOBALMAPPINGBASIC will be used; 887413f72f0SBarry Smith this uses more memory but is faster; this approach is not scalable for extremely large mappings. For large problems ISLOCALTOGLOBALMAPPINGHASH is used, this is scalable. 888413f72f0SBarry Smith Use ISLocalToGlobalMappingSetType() or call ISLocalToGlobalMappingSetFromOptions() with the option -islocaltoglobalmapping_type <basic,hash> to control which is used. 8890f5bd95cSBarry Smith 890a997ad1aSLois Curfman McInnes Level: advanced 891a997ad1aSLois Curfman McInnes 89232fd6b96SBarry Smith Developer Note: The manual page states that idx and idxout may be identical but the calling 89332fd6b96SBarry Smith sequence declares idx as const so it cannot be the same as idxout. 89432fd6b96SBarry Smith 8959d90f715SBarry Smith .seealso: ISLocalToGlobalMappingApply(), ISGlobalToLocalMappingApplyBlock(), ISLocalToGlobalMappingCreate(), 896413f72f0SBarry Smith ISLocalToGlobalMappingDestroy() 897d4bb536fSBarry Smith @*/ 898413f72f0SBarry Smith PetscErrorCode ISGlobalToLocalMappingApply(ISLocalToGlobalMapping mapping,ISGlobalToLocalMappingMode type,PetscInt n,const PetscInt idx[],PetscInt *nout,PetscInt idxout[]) 899d4bb536fSBarry Smith { 9009d90f715SBarry Smith PetscErrorCode ierr; 9019d90f715SBarry Smith 9029d90f715SBarry Smith PetscFunctionBegin; 9039d90f715SBarry Smith PetscValidHeaderSpecific(mapping,IS_LTOGM_CLASSID,1); 904413f72f0SBarry Smith if (!mapping->data) { 905413f72f0SBarry Smith ierr = ISGlobalToLocalMappingSetUp(mapping);CHKERRQ(ierr); 9069d90f715SBarry Smith } 907413f72f0SBarry Smith ierr = (*mapping->ops->globaltolocalmappingapply)(mapping,type,n,idx,nout,idxout);CHKERRQ(ierr); 9089d90f715SBarry Smith PetscFunctionReturn(0); 9099d90f715SBarry Smith } 9109d90f715SBarry Smith 911d4fe737eSStefano Zampini /*@ 912d4fe737eSStefano Zampini ISGlobalToLocalMappingApplyIS - Creates from an IS in the global numbering 913d4fe737eSStefano Zampini a new index set using the local numbering defined in an ISLocalToGlobalMapping 914d4fe737eSStefano Zampini context. 915d4fe737eSStefano Zampini 916d4fe737eSStefano Zampini Not collective 917d4fe737eSStefano Zampini 918d4fe737eSStefano Zampini Input Parameters: 919d4fe737eSStefano Zampini + mapping - mapping between local and global numbering 9200040bde1SJunchao Zhang . type - IS_GTOLM_MASK - maps global indices with no local value to -1 in the output list (i.e., mask them) 9212785b321SStefano Zampini IS_GTOLM_DROP - drops the indices with no local value from the output list 922d4fe737eSStefano Zampini - is - index set in global numbering 923d4fe737eSStefano Zampini 924d4fe737eSStefano Zampini Output Parameters: 925d4fe737eSStefano Zampini . newis - index set in local numbering 926d4fe737eSStefano Zampini 9274cb36875SStefano Zampini Notes: 9284cb36875SStefano Zampini The output IS will be sequential, as it encodes a purely local operation 9294cb36875SStefano Zampini 930d4fe737eSStefano Zampini Level: advanced 931d4fe737eSStefano Zampini 932d4fe737eSStefano Zampini .seealso: ISGlobalToLocalMappingApply(), ISLocalToGlobalMappingCreate(), 933d4fe737eSStefano Zampini ISLocalToGlobalMappingDestroy() 934d4fe737eSStefano Zampini @*/ 935413f72f0SBarry Smith PetscErrorCode ISGlobalToLocalMappingApplyIS(ISLocalToGlobalMapping mapping,ISGlobalToLocalMappingMode type,IS is,IS *newis) 936d4fe737eSStefano Zampini { 937d4fe737eSStefano Zampini PetscErrorCode ierr; 938d4fe737eSStefano Zampini PetscInt n,nout,*idxout; 939d4fe737eSStefano Zampini const PetscInt *idxin; 940d4fe737eSStefano Zampini 941d4fe737eSStefano Zampini PetscFunctionBegin; 942d4fe737eSStefano Zampini PetscValidHeaderSpecific(mapping,IS_LTOGM_CLASSID,1); 943d4fe737eSStefano Zampini PetscValidHeaderSpecific(is,IS_CLASSID,3); 944d4fe737eSStefano Zampini PetscValidPointer(newis,4); 945d4fe737eSStefano Zampini 946d4fe737eSStefano Zampini ierr = ISGetLocalSize(is,&n);CHKERRQ(ierr); 947d4fe737eSStefano Zampini ierr = ISGetIndices(is,&idxin);CHKERRQ(ierr); 948d4fe737eSStefano Zampini if (type == IS_GTOLM_MASK) { 949d4fe737eSStefano Zampini ierr = PetscMalloc1(n,&idxout);CHKERRQ(ierr); 950d4fe737eSStefano Zampini } else { 951d4fe737eSStefano Zampini ierr = ISGlobalToLocalMappingApply(mapping,type,n,idxin,&nout,NULL);CHKERRQ(ierr); 952d4fe737eSStefano Zampini ierr = PetscMalloc1(nout,&idxout);CHKERRQ(ierr); 953d4fe737eSStefano Zampini } 954d4fe737eSStefano Zampini ierr = ISGlobalToLocalMappingApply(mapping,type,n,idxin,&nout,idxout);CHKERRQ(ierr); 955d4fe737eSStefano Zampini ierr = ISRestoreIndices(is,&idxin);CHKERRQ(ierr); 9564cb36875SStefano Zampini ierr = ISCreateGeneral(PETSC_COMM_SELF,nout,idxout,PETSC_OWN_POINTER,newis);CHKERRQ(ierr); 957d4fe737eSStefano Zampini PetscFunctionReturn(0); 958d4fe737eSStefano Zampini } 959d4fe737eSStefano Zampini 9609d90f715SBarry Smith /*@ 9619d90f715SBarry Smith ISGlobalToLocalMappingApplyBlock - Provides the local block numbering for a list of integers 9629d90f715SBarry Smith specified with a block global numbering. 9639d90f715SBarry Smith 9649d90f715SBarry Smith Not collective 9659d90f715SBarry Smith 9669d90f715SBarry Smith Input Parameters: 9679d90f715SBarry Smith + mapping - mapping between local and global numbering 9680040bde1SJunchao Zhang . type - IS_GTOLM_MASK - maps global indices with no local value to -1 in the output list (i.e., mask them) 9699d90f715SBarry Smith IS_GTOLM_DROP - drops the indices with no local value from the output list 9709d90f715SBarry Smith . n - number of global indices to map 9719d90f715SBarry Smith - idx - global indices to map 9729d90f715SBarry Smith 9739d90f715SBarry Smith Output Parameters: 9749d90f715SBarry Smith + nout - number of indices in output array (if type == IS_GTOLM_MASK then nout = n) 9759d90f715SBarry Smith - idxout - local index of each global index, one must pass in an array long enough 9769d90f715SBarry Smith to hold all the indices. You can call ISGlobalToLocalMappingApplyBlock() with 9779d90f715SBarry Smith idxout == NULL to determine the required length (returned in nout) 9789d90f715SBarry Smith and then allocate the required space and call ISGlobalToLocalMappingApplyBlock() 9799d90f715SBarry Smith a second time to set the values. 9809d90f715SBarry Smith 9819d90f715SBarry Smith Notes: 9829d90f715SBarry Smith Either nout or idxout may be NULL. idx and idxout may be identical. 9839d90f715SBarry Smith 9849a7b7924SJed Brown For "small" problems when using ISGlobalToLocalMappingApply() and ISGlobalToLocalMappingApplyBlock(), the ISLocalToGlobalMappingType of ISLOCALTOGLOBALMAPPINGBASIC will be used; 985413f72f0SBarry Smith this uses more memory but is faster; this approach is not scalable for extremely large mappings. For large problems ISLOCALTOGLOBALMAPPINGHASH is used, this is scalable. 986413f72f0SBarry Smith Use ISLocalToGlobalMappingSetType() or call ISLocalToGlobalMappingSetFromOptions() with the option -islocaltoglobalmapping_type <basic,hash> to control which is used. 9879d90f715SBarry Smith 9889d90f715SBarry Smith Level: advanced 9899d90f715SBarry Smith 9909d90f715SBarry Smith Developer Note: The manual page states that idx and idxout may be identical but the calling 9919d90f715SBarry Smith sequence declares idx as const so it cannot be the same as idxout. 9929d90f715SBarry Smith 9939d90f715SBarry Smith .seealso: ISLocalToGlobalMappingApply(), ISGlobalToLocalMappingApply(), ISLocalToGlobalMappingCreate(), 994413f72f0SBarry Smith ISLocalToGlobalMappingDestroy() 9959d90f715SBarry Smith @*/ 996413f72f0SBarry Smith PetscErrorCode ISGlobalToLocalMappingApplyBlock(ISLocalToGlobalMapping mapping,ISGlobalToLocalMappingMode type, 9979d90f715SBarry Smith PetscInt n,const PetscInt idx[],PetscInt *nout,PetscInt idxout[]) 9989d90f715SBarry Smith { 9996849ba73SBarry Smith PetscErrorCode ierr; 1000d4bb536fSBarry Smith 10013a40ed3dSBarry Smith PetscFunctionBegin; 10020700a824SBarry Smith PetscValidHeaderSpecific(mapping,IS_LTOGM_CLASSID,1); 1003413f72f0SBarry Smith if (!mapping->data) { 1004413f72f0SBarry Smith ierr = ISGlobalToLocalMappingSetUp(mapping);CHKERRQ(ierr); 1005d4bb536fSBarry Smith } 1006413f72f0SBarry Smith ierr = (*mapping->ops->globaltolocalmappingapplyblock)(mapping,type,n,idx,nout,idxout);CHKERRQ(ierr); 10073a40ed3dSBarry Smith PetscFunctionReturn(0); 1008d4bb536fSBarry Smith } 100990f02eecSBarry Smith 1010413f72f0SBarry Smith 101189d82c54SBarry Smith /*@C 10126a818285SBarry Smith ISLocalToGlobalMappingGetBlockInfo - Gets the neighbor information for each processor and 101389d82c54SBarry Smith each index shared by more than one processor 101489d82c54SBarry Smith 101589d82c54SBarry Smith Collective on ISLocalToGlobalMapping 101689d82c54SBarry Smith 101789d82c54SBarry Smith Input Parameters: 101889d82c54SBarry Smith . mapping - the mapping from local to global indexing 101989d82c54SBarry Smith 102089d82c54SBarry Smith Output Parameter: 102189d82c54SBarry Smith + nproc - number of processors that are connected to this one 102289d82c54SBarry Smith . proc - neighboring processors 102307b52d57SBarry Smith . numproc - number of indices for each subdomain (processor) 10243463a7baSJed Brown - indices - indices of nodes (in local numbering) shared with neighbors (sorted by global numbering) 102589d82c54SBarry Smith 102689d82c54SBarry Smith Level: advanced 102789d82c54SBarry Smith 10282cfcea29SBarry Smith Fortran Usage: 10292cfcea29SBarry Smith $ ISLocalToGlobalMpngGetInfoSize(ISLocalToGlobalMapping,PetscInt nproc,PetscInt numprocmax,ierr) followed by 10302cfcea29SBarry Smith $ ISLocalToGlobalMappingGetInfo(ISLocalToGlobalMapping,PetscInt nproc, PetscInt procs[nproc],PetscInt numprocs[nproc], 10312cfcea29SBarry Smith PetscInt indices[nproc][numprocmax],ierr) 10322cfcea29SBarry Smith There is no ISLocalToGlobalMappingRestoreInfo() in Fortran. You must make sure that procs[], numprocs[] and 10332cfcea29SBarry Smith indices[][] are large enough arrays, either by allocating them dynamically or defining static ones large enough. 10342cfcea29SBarry Smith 10352cfcea29SBarry Smith 103607b52d57SBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreateIS(), ISLocalToGlobalMappingCreate(), 103707b52d57SBarry Smith ISLocalToGlobalMappingRestoreInfo() 103889d82c54SBarry Smith @*/ 10396a818285SBarry Smith PetscErrorCode ISLocalToGlobalMappingGetBlockInfo(ISLocalToGlobalMapping mapping,PetscInt *nproc,PetscInt *procs[],PetscInt *numprocs[],PetscInt **indices[]) 104089d82c54SBarry Smith { 10416849ba73SBarry Smith PetscErrorCode ierr; 1042268a049cSStefano Zampini 1043268a049cSStefano Zampini PetscFunctionBegin; 1044268a049cSStefano Zampini PetscValidHeaderSpecific(mapping,IS_LTOGM_CLASSID,1); 1045268a049cSStefano Zampini if (mapping->info_cached) { 1046268a049cSStefano Zampini *nproc = mapping->info_nproc; 1047268a049cSStefano Zampini *procs = mapping->info_procs; 1048268a049cSStefano Zampini *numprocs = mapping->info_numprocs; 1049268a049cSStefano Zampini *indices = mapping->info_indices; 1050268a049cSStefano Zampini } else { 1051268a049cSStefano Zampini ierr = ISLocalToGlobalMappingGetBlockInfo_Private(mapping,nproc,procs,numprocs,indices);CHKERRQ(ierr); 1052268a049cSStefano Zampini } 1053268a049cSStefano Zampini PetscFunctionReturn(0); 1054268a049cSStefano Zampini } 1055268a049cSStefano Zampini 1056268a049cSStefano Zampini static PetscErrorCode ISLocalToGlobalMappingGetBlockInfo_Private(ISLocalToGlobalMapping mapping,PetscInt *nproc,PetscInt *procs[],PetscInt *numprocs[],PetscInt **indices[]) 1057268a049cSStefano Zampini { 1058268a049cSStefano Zampini PetscErrorCode ierr; 105997f1f81fSBarry Smith PetscMPIInt size,rank,tag1,tag2,tag3,*len,*source,imdex; 106032dcc486SBarry Smith PetscInt i,n = mapping->n,Ng,ng,max = 0,*lindices = mapping->indices; 106132dcc486SBarry Smith PetscInt *nprocs,*owner,nsends,*sends,j,*starts,nmax,nrecvs,*recvs,proc; 106297f1f81fSBarry Smith PetscInt cnt,scale,*ownedsenders,*nownedsenders,rstart,nowned; 106332dcc486SBarry Smith PetscInt node,nownedm,nt,*sends2,nsends2,*starts2,*lens2,*dest,nrecvs2,*starts3,*recvs2,k,*bprocs,*tmp; 106432dcc486SBarry Smith PetscInt first_procs,first_numprocs,*first_indices; 106589d82c54SBarry Smith MPI_Request *recv_waits,*send_waits; 106630dcb7c9SBarry Smith MPI_Status recv_status,*send_status,*recv_statuses; 1067ce94432eSBarry Smith MPI_Comm comm; 1068ace3abfcSBarry Smith PetscBool debug = PETSC_FALSE; 106989d82c54SBarry Smith 107089d82c54SBarry Smith PetscFunctionBegin; 1071ce94432eSBarry Smith ierr = PetscObjectGetComm((PetscObject)mapping,&comm);CHKERRQ(ierr); 1072ffc4695bSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRMPI(ierr); 1073ffc4695bSBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRMPI(ierr); 107424cf384cSBarry Smith if (size == 1) { 107524cf384cSBarry Smith *nproc = 0; 10760298fd71SBarry Smith *procs = NULL; 107795dccacaSBarry Smith ierr = PetscNew(numprocs);CHKERRQ(ierr); 10781e2105dcSBarry Smith (*numprocs)[0] = 0; 107995dccacaSBarry Smith ierr = PetscNew(indices);CHKERRQ(ierr); 10800298fd71SBarry Smith (*indices)[0] = NULL; 1081268a049cSStefano Zampini /* save info for reuse */ 1082268a049cSStefano Zampini mapping->info_nproc = *nproc; 1083268a049cSStefano Zampini mapping->info_procs = *procs; 1084268a049cSStefano Zampini mapping->info_numprocs = *numprocs; 1085268a049cSStefano Zampini mapping->info_indices = *indices; 1086268a049cSStefano Zampini mapping->info_cached = PETSC_TRUE; 108724cf384cSBarry Smith PetscFunctionReturn(0); 108824cf384cSBarry Smith } 108924cf384cSBarry Smith 1090c5929fdfSBarry Smith ierr = PetscOptionsGetBool(((PetscObject)mapping)->options,NULL,"-islocaltoglobalmappinggetinfo_debug",&debug,NULL);CHKERRQ(ierr); 109107b52d57SBarry Smith 10923677ff5aSBarry Smith /* 10936a818285SBarry Smith Notes on ISLocalToGlobalMappingGetBlockInfo 10943677ff5aSBarry Smith 10953677ff5aSBarry Smith globally owned node - the nodes that have been assigned to this processor in global 10963677ff5aSBarry Smith numbering, just for this routine. 10973677ff5aSBarry Smith 10983677ff5aSBarry Smith nontrivial globally owned node - node assigned to this processor that is on a subdomain 10993677ff5aSBarry Smith boundary (i.e. is has more than one local owner) 11003677ff5aSBarry Smith 11013677ff5aSBarry Smith locally owned node - node that exists on this processors subdomain 11023677ff5aSBarry Smith 11033677ff5aSBarry Smith nontrivial locally owned node - node that is not in the interior (i.e. has more than one 11043677ff5aSBarry Smith local subdomain 11053677ff5aSBarry Smith */ 110624cf384cSBarry Smith ierr = PetscObjectGetNewTag((PetscObject)mapping,&tag1);CHKERRQ(ierr); 110724cf384cSBarry Smith ierr = PetscObjectGetNewTag((PetscObject)mapping,&tag2);CHKERRQ(ierr); 110824cf384cSBarry Smith ierr = PetscObjectGetNewTag((PetscObject)mapping,&tag3);CHKERRQ(ierr); 110989d82c54SBarry Smith 111089d82c54SBarry Smith for (i=0; i<n; i++) { 111189d82c54SBarry Smith if (lindices[i] > max) max = lindices[i]; 111289d82c54SBarry Smith } 1113820f2d46SBarry Smith ierr = MPIU_Allreduce(&max,&Ng,1,MPIU_INT,MPI_MAX,comm);CHKERRMPI(ierr); 111478058e43SBarry Smith Ng++; 111555b25c41SPierre Jolivet ierr = MPI_Comm_size(comm,&size);CHKERRMPI(ierr); 111655b25c41SPierre Jolivet ierr = MPI_Comm_rank(comm,&rank);CHKERRMPI(ierr); 1117bc8ff85bSBarry Smith scale = Ng/size + 1; 1118a2e34c3dSBarry Smith ng = scale; if (rank == size-1) ng = Ng - scale*(size-1); ng = PetscMax(1,ng); 1119caba0dd0SBarry Smith rstart = scale*rank; 112089d82c54SBarry Smith 112189d82c54SBarry Smith /* determine ownership ranges of global indices */ 1122785e854fSJed Brown ierr = PetscMalloc1(2*size,&nprocs);CHKERRQ(ierr); 1123580bdb30SBarry Smith ierr = PetscArrayzero(nprocs,2*size);CHKERRQ(ierr); 112489d82c54SBarry Smith 112589d82c54SBarry Smith /* determine owners of each local node */ 1126785e854fSJed Brown ierr = PetscMalloc1(n,&owner);CHKERRQ(ierr); 112789d82c54SBarry Smith for (i=0; i<n; i++) { 11283677ff5aSBarry Smith proc = lindices[i]/scale; /* processor that globally owns this index */ 112927c402fcSBarry Smith nprocs[2*proc+1] = 1; /* processor globally owns at least one of ours */ 11303677ff5aSBarry Smith owner[i] = proc; 113127c402fcSBarry Smith nprocs[2*proc]++; /* count of how many that processor globally owns of ours */ 113289d82c54SBarry Smith } 113327c402fcSBarry Smith nsends = 0; for (i=0; i<size; i++) nsends += nprocs[2*i+1]; 11347904a332SBarry Smith ierr = PetscInfo1(mapping,"Number of global owners for my local data %D\n",nsends);CHKERRQ(ierr); 113589d82c54SBarry Smith 113689d82c54SBarry Smith /* inform other processors of number of messages and max length*/ 113727c402fcSBarry Smith ierr = PetscMaxSum(comm,nprocs,&nmax,&nrecvs);CHKERRQ(ierr); 11387904a332SBarry Smith ierr = PetscInfo1(mapping,"Number of local owners for my global data %D\n",nrecvs);CHKERRQ(ierr); 113989d82c54SBarry Smith 114089d82c54SBarry Smith /* post receives for owned rows */ 1141785e854fSJed Brown ierr = PetscMalloc1((2*nrecvs+1)*(nmax+1),&recvs);CHKERRQ(ierr); 1142854ce69bSBarry Smith ierr = PetscMalloc1(nrecvs+1,&recv_waits);CHKERRQ(ierr); 114389d82c54SBarry Smith for (i=0; i<nrecvs; i++) { 1144ffc4695bSBarry Smith ierr = MPI_Irecv(recvs+2*nmax*i,2*nmax,MPIU_INT,MPI_ANY_SOURCE,tag1,comm,recv_waits+i);CHKERRMPI(ierr); 114589d82c54SBarry Smith } 114689d82c54SBarry Smith 114789d82c54SBarry Smith /* pack messages containing lists of local nodes to owners */ 1148854ce69bSBarry Smith ierr = PetscMalloc1(2*n+1,&sends);CHKERRQ(ierr); 1149854ce69bSBarry Smith ierr = PetscMalloc1(size+1,&starts);CHKERRQ(ierr); 115089d82c54SBarry Smith starts[0] = 0; 1151f6e5521dSKarl Rupp for (i=1; i<size; i++) starts[i] = starts[i-1] + 2*nprocs[2*i-2]; 115289d82c54SBarry Smith for (i=0; i<n; i++) { 115389d82c54SBarry Smith sends[starts[owner[i]]++] = lindices[i]; 115430dcb7c9SBarry Smith sends[starts[owner[i]]++] = i; 115589d82c54SBarry Smith } 115689d82c54SBarry Smith ierr = PetscFree(owner);CHKERRQ(ierr); 115789d82c54SBarry Smith starts[0] = 0; 1158f6e5521dSKarl Rupp for (i=1; i<size; i++) starts[i] = starts[i-1] + 2*nprocs[2*i-2]; 115989d82c54SBarry Smith 116089d82c54SBarry Smith /* send the messages */ 1161854ce69bSBarry Smith ierr = PetscMalloc1(nsends+1,&send_waits);CHKERRQ(ierr); 1162854ce69bSBarry Smith ierr = PetscMalloc1(nsends+1,&dest);CHKERRQ(ierr); 116389d82c54SBarry Smith cnt = 0; 116489d82c54SBarry Smith for (i=0; i<size; i++) { 116527c402fcSBarry Smith if (nprocs[2*i]) { 116655b25c41SPierre Jolivet ierr = MPI_Isend(sends+starts[i],2*nprocs[2*i],MPIU_INT,i,tag1,comm,send_waits+cnt);CHKERRMPI(ierr); 116730dcb7c9SBarry Smith dest[cnt] = i; 116889d82c54SBarry Smith cnt++; 116989d82c54SBarry Smith } 117089d82c54SBarry Smith } 117189d82c54SBarry Smith ierr = PetscFree(starts);CHKERRQ(ierr); 117289d82c54SBarry Smith 117389d82c54SBarry Smith /* wait on receives */ 1174854ce69bSBarry Smith ierr = PetscMalloc1(nrecvs+1,&source);CHKERRQ(ierr); 1175854ce69bSBarry Smith ierr = PetscMalloc1(nrecvs+1,&len);CHKERRQ(ierr); 117689d82c54SBarry Smith cnt = nrecvs; 1177580bdb30SBarry Smith ierr = PetscCalloc1(ng+1,&nownedsenders);CHKERRQ(ierr); 117889d82c54SBarry Smith while (cnt) { 1179ffc4695bSBarry Smith ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRMPI(ierr); 118089d82c54SBarry Smith /* unpack receives into our local space */ 118155b25c41SPierre Jolivet ierr = MPI_Get_count(&recv_status,MPIU_INT,&len[imdex]);CHKERRMPI(ierr); 118289d82c54SBarry Smith source[imdex] = recv_status.MPI_SOURCE; 118330dcb7c9SBarry Smith len[imdex] = len[imdex]/2; 1184caba0dd0SBarry Smith /* count how many local owners for each of my global owned indices */ 118530dcb7c9SBarry Smith for (i=0; i<len[imdex]; i++) nownedsenders[recvs[2*imdex*nmax+2*i]-rstart]++; 118689d82c54SBarry Smith cnt--; 118789d82c54SBarry Smith } 118889d82c54SBarry Smith ierr = PetscFree(recv_waits);CHKERRQ(ierr); 118989d82c54SBarry Smith 119030dcb7c9SBarry Smith /* count how many globally owned indices are on an edge multiplied by how many processors own them. */ 1191bc8ff85bSBarry Smith nowned = 0; 1192bc8ff85bSBarry Smith nownedm = 0; 1193bc8ff85bSBarry Smith for (i=0; i<ng; i++) { 1194bc8ff85bSBarry Smith if (nownedsenders[i] > 1) {nownedm += nownedsenders[i]; nowned++;} 1195bc8ff85bSBarry Smith } 1196bc8ff85bSBarry Smith 1197bc8ff85bSBarry Smith /* create single array to contain rank of all local owners of each globally owned index */ 1198854ce69bSBarry Smith ierr = PetscMalloc1(nownedm+1,&ownedsenders);CHKERRQ(ierr); 1199854ce69bSBarry Smith ierr = PetscMalloc1(ng+1,&starts);CHKERRQ(ierr); 1200bc8ff85bSBarry Smith starts[0] = 0; 1201bc8ff85bSBarry Smith for (i=1; i<ng; i++) { 1202bc8ff85bSBarry Smith if (nownedsenders[i-1] > 1) starts[i] = starts[i-1] + nownedsenders[i-1]; 1203bc8ff85bSBarry Smith else starts[i] = starts[i-1]; 1204bc8ff85bSBarry Smith } 1205bc8ff85bSBarry Smith 120630dcb7c9SBarry Smith /* for each nontrival globally owned node list all arriving processors */ 1207bc8ff85bSBarry Smith for (i=0; i<nrecvs; i++) { 1208bc8ff85bSBarry Smith for (j=0; j<len[i]; j++) { 120930dcb7c9SBarry Smith node = recvs[2*i*nmax+2*j]-rstart; 1210f6e5521dSKarl Rupp if (nownedsenders[node] > 1) ownedsenders[starts[node]++] = source[i]; 1211bc8ff85bSBarry Smith } 1212bc8ff85bSBarry Smith } 1213bc8ff85bSBarry Smith 121407b52d57SBarry Smith if (debug) { /* ----------------------------------- */ 121530dcb7c9SBarry Smith starts[0] = 0; 121630dcb7c9SBarry Smith for (i=1; i<ng; i++) { 121730dcb7c9SBarry Smith if (nownedsenders[i-1] > 1) starts[i] = starts[i-1] + nownedsenders[i-1]; 121830dcb7c9SBarry Smith else starts[i] = starts[i-1]; 121930dcb7c9SBarry Smith } 122030dcb7c9SBarry Smith for (i=0; i<ng; i++) { 122130dcb7c9SBarry Smith if (nownedsenders[i] > 1) { 12227904a332SBarry Smith ierr = PetscSynchronizedPrintf(comm,"[%d] global node %D local owner processors: ",rank,i+rstart);CHKERRQ(ierr); 122330dcb7c9SBarry Smith for (j=0; j<nownedsenders[i]; j++) { 12247904a332SBarry Smith ierr = PetscSynchronizedPrintf(comm,"%D ",ownedsenders[starts[i]+j]);CHKERRQ(ierr); 122530dcb7c9SBarry Smith } 122630dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"\n");CHKERRQ(ierr); 122730dcb7c9SBarry Smith } 122830dcb7c9SBarry Smith } 12290ec8b6e3SBarry Smith ierr = PetscSynchronizedFlush(comm,PETSC_STDOUT);CHKERRQ(ierr); 123007b52d57SBarry Smith } /* ----------------------------------- */ 123130dcb7c9SBarry Smith 12323677ff5aSBarry Smith /* wait on original sends */ 12333a96401aSBarry Smith if (nsends) { 1234785e854fSJed Brown ierr = PetscMalloc1(nsends,&send_status);CHKERRQ(ierr); 1235ffc4695bSBarry Smith ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRMPI(ierr); 12363a96401aSBarry Smith ierr = PetscFree(send_status);CHKERRQ(ierr); 12373a96401aSBarry Smith } 123889d82c54SBarry Smith ierr = PetscFree(send_waits);CHKERRQ(ierr); 12393a96401aSBarry Smith ierr = PetscFree(sends);CHKERRQ(ierr); 12403677ff5aSBarry Smith ierr = PetscFree(nprocs);CHKERRQ(ierr); 12413677ff5aSBarry Smith 12423677ff5aSBarry Smith /* pack messages to send back to local owners */ 124330dcb7c9SBarry Smith starts[0] = 0; 124430dcb7c9SBarry Smith for (i=1; i<ng; i++) { 124530dcb7c9SBarry Smith if (nownedsenders[i-1] > 1) starts[i] = starts[i-1] + nownedsenders[i-1]; 124630dcb7c9SBarry Smith else starts[i] = starts[i-1]; 124730dcb7c9SBarry Smith } 124830dcb7c9SBarry Smith nsends2 = nrecvs; 1249854ce69bSBarry Smith ierr = PetscMalloc1(nsends2+1,&nprocs);CHKERRQ(ierr); /* length of each message */ 125030dcb7c9SBarry Smith for (i=0; i<nrecvs; i++) { 125130dcb7c9SBarry Smith nprocs[i] = 1; 125230dcb7c9SBarry Smith for (j=0; j<len[i]; j++) { 125330dcb7c9SBarry Smith node = recvs[2*i*nmax+2*j]-rstart; 1254f6e5521dSKarl Rupp if (nownedsenders[node] > 1) nprocs[i] += 2 + nownedsenders[node]; 125530dcb7c9SBarry Smith } 125630dcb7c9SBarry Smith } 1257f6e5521dSKarl Rupp nt = 0; 1258f6e5521dSKarl Rupp for (i=0; i<nsends2; i++) nt += nprocs[i]; 1259f6e5521dSKarl Rupp 1260854ce69bSBarry Smith ierr = PetscMalloc1(nt+1,&sends2);CHKERRQ(ierr); 1261854ce69bSBarry Smith ierr = PetscMalloc1(nsends2+1,&starts2);CHKERRQ(ierr); 1262f6e5521dSKarl Rupp 1263f6e5521dSKarl Rupp starts2[0] = 0; 1264f6e5521dSKarl Rupp for (i=1; i<nsends2; i++) starts2[i] = starts2[i-1] + nprocs[i-1]; 126530dcb7c9SBarry Smith /* 126630dcb7c9SBarry Smith Each message is 1 + nprocs[i] long, and consists of 126730dcb7c9SBarry Smith (0) the number of nodes being sent back 126830dcb7c9SBarry Smith (1) the local node number, 126930dcb7c9SBarry Smith (2) the number of processors sharing it, 127030dcb7c9SBarry Smith (3) the processors sharing it 127130dcb7c9SBarry Smith */ 127230dcb7c9SBarry Smith for (i=0; i<nsends2; i++) { 127330dcb7c9SBarry Smith cnt = 1; 127430dcb7c9SBarry Smith sends2[starts2[i]] = 0; 127530dcb7c9SBarry Smith for (j=0; j<len[i]; j++) { 127630dcb7c9SBarry Smith node = recvs[2*i*nmax+2*j]-rstart; 127730dcb7c9SBarry Smith if (nownedsenders[node] > 1) { 127830dcb7c9SBarry Smith sends2[starts2[i]]++; 127930dcb7c9SBarry Smith sends2[starts2[i]+cnt++] = recvs[2*i*nmax+2*j+1]; 128030dcb7c9SBarry Smith sends2[starts2[i]+cnt++] = nownedsenders[node]; 1281580bdb30SBarry Smith ierr = PetscArraycpy(&sends2[starts2[i]+cnt],&ownedsenders[starts[node]],nownedsenders[node]);CHKERRQ(ierr); 128230dcb7c9SBarry Smith cnt += nownedsenders[node]; 128330dcb7c9SBarry Smith } 128430dcb7c9SBarry Smith } 128530dcb7c9SBarry Smith } 128630dcb7c9SBarry Smith 128730dcb7c9SBarry Smith /* receive the message lengths */ 128830dcb7c9SBarry Smith nrecvs2 = nsends; 1289854ce69bSBarry Smith ierr = PetscMalloc1(nrecvs2+1,&lens2);CHKERRQ(ierr); 1290854ce69bSBarry Smith ierr = PetscMalloc1(nrecvs2+1,&starts3);CHKERRQ(ierr); 1291854ce69bSBarry Smith ierr = PetscMalloc1(nrecvs2+1,&recv_waits);CHKERRQ(ierr); 129230dcb7c9SBarry Smith for (i=0; i<nrecvs2; i++) { 1293ffc4695bSBarry Smith ierr = MPI_Irecv(&lens2[i],1,MPIU_INT,dest[i],tag2,comm,recv_waits+i);CHKERRMPI(ierr); 129430dcb7c9SBarry Smith } 1295d44834fbSBarry Smith 12968a8e0b3aSBarry Smith /* send the message lengths */ 12978a8e0b3aSBarry Smith for (i=0; i<nsends2; i++) { 1298ffc4695bSBarry Smith ierr = MPI_Send(&nprocs[i],1,MPIU_INT,source[i],tag2,comm);CHKERRMPI(ierr); 12998a8e0b3aSBarry Smith } 13008a8e0b3aSBarry Smith 1301d44834fbSBarry Smith /* wait on receives of lens */ 13020c468ba9SBarry Smith if (nrecvs2) { 1303785e854fSJed Brown ierr = PetscMalloc1(nrecvs2,&recv_statuses);CHKERRQ(ierr); 1304ffc4695bSBarry Smith ierr = MPI_Waitall(nrecvs2,recv_waits,recv_statuses);CHKERRMPI(ierr); 1305d44834fbSBarry Smith ierr = PetscFree(recv_statuses);CHKERRQ(ierr); 13060c468ba9SBarry Smith } 1307a2ea699eSBarry Smith ierr = PetscFree(recv_waits);CHKERRQ(ierr); 1308d44834fbSBarry Smith 130930dcb7c9SBarry Smith starts3[0] = 0; 1310d44834fbSBarry Smith nt = 0; 131130dcb7c9SBarry Smith for (i=0; i<nrecvs2-1; i++) { 131230dcb7c9SBarry Smith starts3[i+1] = starts3[i] + lens2[i]; 1313d44834fbSBarry Smith nt += lens2[i]; 131430dcb7c9SBarry Smith } 131576466f69SStefano Zampini if (nrecvs2) nt += lens2[nrecvs2-1]; 1316d44834fbSBarry Smith 1317854ce69bSBarry Smith ierr = PetscMalloc1(nt+1,&recvs2);CHKERRQ(ierr); 1318854ce69bSBarry Smith ierr = PetscMalloc1(nrecvs2+1,&recv_waits);CHKERRQ(ierr); 131952b72c4aSBarry Smith for (i=0; i<nrecvs2; i++) { 1320ffc4695bSBarry Smith ierr = MPI_Irecv(recvs2+starts3[i],lens2[i],MPIU_INT,dest[i],tag3,comm,recv_waits+i);CHKERRMPI(ierr); 132130dcb7c9SBarry Smith } 132230dcb7c9SBarry Smith 132330dcb7c9SBarry Smith /* send the messages */ 1324854ce69bSBarry Smith ierr = PetscMalloc1(nsends2+1,&send_waits);CHKERRQ(ierr); 132530dcb7c9SBarry Smith for (i=0; i<nsends2; i++) { 1326ffc4695bSBarry Smith ierr = MPI_Isend(sends2+starts2[i],nprocs[i],MPIU_INT,source[i],tag3,comm,send_waits+i);CHKERRMPI(ierr); 132730dcb7c9SBarry Smith } 132830dcb7c9SBarry Smith 132930dcb7c9SBarry Smith /* wait on receives */ 13300c468ba9SBarry Smith if (nrecvs2) { 1331785e854fSJed Brown ierr = PetscMalloc1(nrecvs2,&recv_statuses);CHKERRQ(ierr); 1332ffc4695bSBarry Smith ierr = MPI_Waitall(nrecvs2,recv_waits,recv_statuses);CHKERRMPI(ierr); 133330dcb7c9SBarry Smith ierr = PetscFree(recv_statuses);CHKERRQ(ierr); 13340c468ba9SBarry Smith } 133530dcb7c9SBarry Smith ierr = PetscFree(recv_waits);CHKERRQ(ierr); 133630dcb7c9SBarry Smith ierr = PetscFree(nprocs);CHKERRQ(ierr); 133730dcb7c9SBarry Smith 133807b52d57SBarry Smith if (debug) { /* ----------------------------------- */ 133930dcb7c9SBarry Smith cnt = 0; 134030dcb7c9SBarry Smith for (i=0; i<nrecvs2; i++) { 134130dcb7c9SBarry Smith nt = recvs2[cnt++]; 134230dcb7c9SBarry Smith for (j=0; j<nt; j++) { 13437904a332SBarry Smith ierr = PetscSynchronizedPrintf(comm,"[%d] local node %D number of subdomains %D: ",rank,recvs2[cnt],recvs2[cnt+1]);CHKERRQ(ierr); 134430dcb7c9SBarry Smith for (k=0; k<recvs2[cnt+1]; k++) { 13457904a332SBarry Smith ierr = PetscSynchronizedPrintf(comm,"%D ",recvs2[cnt+2+k]);CHKERRQ(ierr); 134630dcb7c9SBarry Smith } 134730dcb7c9SBarry Smith cnt += 2 + recvs2[cnt+1]; 134830dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"\n");CHKERRQ(ierr); 134930dcb7c9SBarry Smith } 135030dcb7c9SBarry Smith } 13510ec8b6e3SBarry Smith ierr = PetscSynchronizedFlush(comm,PETSC_STDOUT);CHKERRQ(ierr); 135207b52d57SBarry Smith } /* ----------------------------------- */ 135330dcb7c9SBarry Smith 135430dcb7c9SBarry Smith /* count number subdomains for each local node */ 1355580bdb30SBarry Smith ierr = PetscCalloc1(size,&nprocs);CHKERRQ(ierr); 135630dcb7c9SBarry Smith cnt = 0; 135730dcb7c9SBarry Smith for (i=0; i<nrecvs2; i++) { 135830dcb7c9SBarry Smith nt = recvs2[cnt++]; 135930dcb7c9SBarry Smith for (j=0; j<nt; j++) { 1360f6e5521dSKarl Rupp for (k=0; k<recvs2[cnt+1]; k++) nprocs[recvs2[cnt+2+k]]++; 136130dcb7c9SBarry Smith cnt += 2 + recvs2[cnt+1]; 136230dcb7c9SBarry Smith } 136330dcb7c9SBarry Smith } 136430dcb7c9SBarry Smith nt = 0; for (i=0; i<size; i++) nt += (nprocs[i] > 0); 136530dcb7c9SBarry Smith *nproc = nt; 1366854ce69bSBarry Smith ierr = PetscMalloc1(nt+1,procs);CHKERRQ(ierr); 1367854ce69bSBarry Smith ierr = PetscMalloc1(nt+1,numprocs);CHKERRQ(ierr); 1368854ce69bSBarry Smith ierr = PetscMalloc1(nt+1,indices);CHKERRQ(ierr); 13690298fd71SBarry Smith for (i=0;i<nt+1;i++) (*indices)[i]=NULL; 1370785e854fSJed Brown ierr = PetscMalloc1(size,&bprocs);CHKERRQ(ierr); 137130dcb7c9SBarry Smith cnt = 0; 137230dcb7c9SBarry Smith for (i=0; i<size; i++) { 137330dcb7c9SBarry Smith if (nprocs[i] > 0) { 137430dcb7c9SBarry Smith bprocs[i] = cnt; 137530dcb7c9SBarry Smith (*procs)[cnt] = i; 137630dcb7c9SBarry Smith (*numprocs)[cnt] = nprocs[i]; 1377785e854fSJed Brown ierr = PetscMalloc1(nprocs[i],&(*indices)[cnt]);CHKERRQ(ierr); 137830dcb7c9SBarry Smith cnt++; 137930dcb7c9SBarry Smith } 138030dcb7c9SBarry Smith } 138130dcb7c9SBarry Smith 138230dcb7c9SBarry Smith /* make the list of subdomains for each nontrivial local node */ 1383580bdb30SBarry Smith ierr = PetscArrayzero(*numprocs,nt);CHKERRQ(ierr); 138430dcb7c9SBarry Smith cnt = 0; 138530dcb7c9SBarry Smith for (i=0; i<nrecvs2; i++) { 138630dcb7c9SBarry Smith nt = recvs2[cnt++]; 138730dcb7c9SBarry Smith for (j=0; j<nt; j++) { 1388f6e5521dSKarl Rupp for (k=0; k<recvs2[cnt+1]; k++) (*indices)[bprocs[recvs2[cnt+2+k]]][(*numprocs)[bprocs[recvs2[cnt+2+k]]]++] = recvs2[cnt]; 138930dcb7c9SBarry Smith cnt += 2 + recvs2[cnt+1]; 139030dcb7c9SBarry Smith } 139130dcb7c9SBarry Smith } 139230dcb7c9SBarry Smith ierr = PetscFree(bprocs);CHKERRQ(ierr); 139307b52d57SBarry Smith ierr = PetscFree(recvs2);CHKERRQ(ierr); 139430dcb7c9SBarry Smith 139507b52d57SBarry Smith /* sort the node indexing by their global numbers */ 139607b52d57SBarry Smith nt = *nproc; 139707b52d57SBarry Smith for (i=0; i<nt; i++) { 1398854ce69bSBarry Smith ierr = PetscMalloc1((*numprocs)[i],&tmp);CHKERRQ(ierr); 1399f6e5521dSKarl Rupp for (j=0; j<(*numprocs)[i]; j++) tmp[j] = lindices[(*indices)[i][j]]; 140007b52d57SBarry Smith ierr = PetscSortIntWithArray((*numprocs)[i],tmp,(*indices)[i]);CHKERRQ(ierr); 140107b52d57SBarry Smith ierr = PetscFree(tmp);CHKERRQ(ierr); 140207b52d57SBarry Smith } 140307b52d57SBarry Smith 140407b52d57SBarry Smith if (debug) { /* ----------------------------------- */ 140530dcb7c9SBarry Smith nt = *nproc; 140630dcb7c9SBarry Smith for (i=0; i<nt; i++) { 14077904a332SBarry Smith ierr = PetscSynchronizedPrintf(comm,"[%d] subdomain %D number of indices %D: ",rank,(*procs)[i],(*numprocs)[i]);CHKERRQ(ierr); 140830dcb7c9SBarry Smith for (j=0; j<(*numprocs)[i]; j++) { 14097904a332SBarry Smith ierr = PetscSynchronizedPrintf(comm,"%D ",(*indices)[i][j]);CHKERRQ(ierr); 141030dcb7c9SBarry Smith } 141130dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"\n");CHKERRQ(ierr); 141230dcb7c9SBarry Smith } 14130ec8b6e3SBarry Smith ierr = PetscSynchronizedFlush(comm,PETSC_STDOUT);CHKERRQ(ierr); 141407b52d57SBarry Smith } /* ----------------------------------- */ 141530dcb7c9SBarry Smith 141630dcb7c9SBarry Smith /* wait on sends */ 141730dcb7c9SBarry Smith if (nsends2) { 1418785e854fSJed Brown ierr = PetscMalloc1(nsends2,&send_status);CHKERRQ(ierr); 1419ffc4695bSBarry Smith ierr = MPI_Waitall(nsends2,send_waits,send_status);CHKERRMPI(ierr); 142030dcb7c9SBarry Smith ierr = PetscFree(send_status);CHKERRQ(ierr); 142130dcb7c9SBarry Smith } 142230dcb7c9SBarry Smith 142330dcb7c9SBarry Smith ierr = PetscFree(starts3);CHKERRQ(ierr); 142430dcb7c9SBarry Smith ierr = PetscFree(dest);CHKERRQ(ierr); 142530dcb7c9SBarry Smith ierr = PetscFree(send_waits);CHKERRQ(ierr); 14263677ff5aSBarry Smith 1427bc8ff85bSBarry Smith ierr = PetscFree(nownedsenders);CHKERRQ(ierr); 1428bc8ff85bSBarry Smith ierr = PetscFree(ownedsenders);CHKERRQ(ierr); 1429bc8ff85bSBarry Smith ierr = PetscFree(starts);CHKERRQ(ierr); 143030dcb7c9SBarry Smith ierr = PetscFree(starts2);CHKERRQ(ierr); 143130dcb7c9SBarry Smith ierr = PetscFree(lens2);CHKERRQ(ierr); 143289d82c54SBarry Smith 143389d82c54SBarry Smith ierr = PetscFree(source);CHKERRQ(ierr); 143497f1f81fSBarry Smith ierr = PetscFree(len);CHKERRQ(ierr); 143589d82c54SBarry Smith ierr = PetscFree(recvs);CHKERRQ(ierr); 14363a96401aSBarry Smith ierr = PetscFree(nprocs);CHKERRQ(ierr); 143730dcb7c9SBarry Smith ierr = PetscFree(sends2);CHKERRQ(ierr); 143824cf384cSBarry Smith 143924cf384cSBarry Smith /* put the information about myself as the first entry in the list */ 144024cf384cSBarry Smith first_procs = (*procs)[0]; 144124cf384cSBarry Smith first_numprocs = (*numprocs)[0]; 144224cf384cSBarry Smith first_indices = (*indices)[0]; 144324cf384cSBarry Smith for (i=0; i<*nproc; i++) { 144424cf384cSBarry Smith if ((*procs)[i] == rank) { 144524cf384cSBarry Smith (*procs)[0] = (*procs)[i]; 144624cf384cSBarry Smith (*numprocs)[0] = (*numprocs)[i]; 144724cf384cSBarry Smith (*indices)[0] = (*indices)[i]; 144824cf384cSBarry Smith (*procs)[i] = first_procs; 144924cf384cSBarry Smith (*numprocs)[i] = first_numprocs; 145024cf384cSBarry Smith (*indices)[i] = first_indices; 145124cf384cSBarry Smith break; 145224cf384cSBarry Smith } 145324cf384cSBarry Smith } 1454268a049cSStefano Zampini 1455268a049cSStefano Zampini /* save info for reuse */ 1456268a049cSStefano Zampini mapping->info_nproc = *nproc; 1457268a049cSStefano Zampini mapping->info_procs = *procs; 1458268a049cSStefano Zampini mapping->info_numprocs = *numprocs; 1459268a049cSStefano Zampini mapping->info_indices = *indices; 1460268a049cSStefano Zampini mapping->info_cached = PETSC_TRUE; 146189d82c54SBarry Smith PetscFunctionReturn(0); 146289d82c54SBarry Smith } 146389d82c54SBarry Smith 14646a818285SBarry Smith /*@C 14656a818285SBarry Smith ISLocalToGlobalMappingRestoreBlockInfo - Frees the memory allocated by ISLocalToGlobalMappingGetBlockInfo() 14666a818285SBarry Smith 14676a818285SBarry Smith Collective on ISLocalToGlobalMapping 14686a818285SBarry Smith 14696a818285SBarry Smith Input Parameters: 14706a818285SBarry Smith . mapping - the mapping from local to global indexing 14716a818285SBarry Smith 14726a818285SBarry Smith Output Parameter: 14736a818285SBarry Smith + nproc - number of processors that are connected to this one 14746a818285SBarry Smith . proc - neighboring processors 14756a818285SBarry Smith . numproc - number of indices for each processor 14766a818285SBarry Smith - indices - indices of local nodes shared with neighbor (sorted by global numbering) 14776a818285SBarry Smith 14786a818285SBarry Smith Level: advanced 14796a818285SBarry Smith 14806a818285SBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreateIS(), ISLocalToGlobalMappingCreate(), 14816a818285SBarry Smith ISLocalToGlobalMappingGetInfo() 14826a818285SBarry Smith @*/ 14836a818285SBarry Smith PetscErrorCode ISLocalToGlobalMappingRestoreBlockInfo(ISLocalToGlobalMapping mapping,PetscInt *nproc,PetscInt *procs[],PetscInt *numprocs[],PetscInt **indices[]) 14846a818285SBarry Smith { 14856a818285SBarry Smith PetscErrorCode ierr; 14866a818285SBarry Smith 14876a818285SBarry Smith PetscFunctionBegin; 1488cbc1caf0SMatthew G. Knepley PetscValidHeaderSpecific(mapping,IS_LTOGM_CLASSID,1); 1489268a049cSStefano Zampini if (mapping->info_free) { 14906a818285SBarry Smith ierr = PetscFree(*numprocs);CHKERRQ(ierr); 14916a818285SBarry Smith if (*indices) { 1492268a049cSStefano Zampini PetscInt i; 1493268a049cSStefano Zampini 14946a818285SBarry Smith ierr = PetscFree((*indices)[0]);CHKERRQ(ierr); 14956a818285SBarry Smith for (i=1; i<*nproc; i++) { 14966a818285SBarry Smith ierr = PetscFree((*indices)[i]);CHKERRQ(ierr); 14976a818285SBarry Smith } 14986a818285SBarry Smith ierr = PetscFree(*indices);CHKERRQ(ierr); 14996a818285SBarry Smith } 1500268a049cSStefano Zampini } 1501268a049cSStefano Zampini *nproc = 0; 1502268a049cSStefano Zampini *procs = NULL; 1503268a049cSStefano Zampini *numprocs = NULL; 1504268a049cSStefano Zampini *indices = NULL; 15056a818285SBarry Smith PetscFunctionReturn(0); 15066a818285SBarry Smith } 15076a818285SBarry Smith 15086a818285SBarry Smith /*@C 15096a818285SBarry Smith ISLocalToGlobalMappingGetInfo - Gets the neighbor information for each processor and 15106a818285SBarry Smith each index shared by more than one processor 15116a818285SBarry Smith 15126a818285SBarry Smith Collective on ISLocalToGlobalMapping 15136a818285SBarry Smith 15146a818285SBarry Smith Input Parameters: 15156a818285SBarry Smith . mapping - the mapping from local to global indexing 15166a818285SBarry Smith 15176a818285SBarry Smith Output Parameter: 15186a818285SBarry Smith + nproc - number of processors that are connected to this one 15196a818285SBarry Smith . proc - neighboring processors 15206a818285SBarry Smith . numproc - number of indices for each subdomain (processor) 15216a818285SBarry Smith - indices - indices of nodes (in local numbering) shared with neighbors (sorted by global numbering) 15226a818285SBarry Smith 15236a818285SBarry Smith Level: advanced 15246a818285SBarry Smith 15251bd0b88eSStefano Zampini Notes: The user needs to call ISLocalToGlobalMappingRestoreInfo when the data is no longer needed. 15261bd0b88eSStefano Zampini 15276a818285SBarry Smith Fortran Usage: 15286a818285SBarry Smith $ ISLocalToGlobalMpngGetInfoSize(ISLocalToGlobalMapping,PetscInt nproc,PetscInt numprocmax,ierr) followed by 15296a818285SBarry Smith $ ISLocalToGlobalMappingGetInfo(ISLocalToGlobalMapping,PetscInt nproc, PetscInt procs[nproc],PetscInt numprocs[nproc], 15306a818285SBarry Smith PetscInt indices[nproc][numprocmax],ierr) 15316a818285SBarry Smith There is no ISLocalToGlobalMappingRestoreInfo() in Fortran. You must make sure that procs[], numprocs[] and 15326a818285SBarry Smith indices[][] are large enough arrays, either by allocating them dynamically or defining static ones large enough. 15336a818285SBarry Smith 15346a818285SBarry Smith 15356a818285SBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreateIS(), ISLocalToGlobalMappingCreate(), 15366a818285SBarry Smith ISLocalToGlobalMappingRestoreInfo() 15376a818285SBarry Smith @*/ 15386a818285SBarry Smith PetscErrorCode ISLocalToGlobalMappingGetInfo(ISLocalToGlobalMapping mapping,PetscInt *nproc,PetscInt *procs[],PetscInt *numprocs[],PetscInt **indices[]) 15396a818285SBarry Smith { 15406a818285SBarry Smith PetscErrorCode ierr; 1541268a049cSStefano Zampini PetscInt **bindices = NULL,*bnumprocs = NULL,bs = mapping->bs,i,j,k; 15426a818285SBarry Smith 15436a818285SBarry Smith PetscFunctionBegin; 15446a818285SBarry Smith PetscValidHeaderSpecific(mapping,IS_LTOGM_CLASSID,1); 1545268a049cSStefano Zampini ierr = ISLocalToGlobalMappingGetBlockInfo(mapping,nproc,procs,&bnumprocs,&bindices);CHKERRQ(ierr); 1546268a049cSStefano Zampini if (bs > 1) { /* we need to expand the cached info */ 1547732f65e3SBarry Smith ierr = PetscCalloc1(*nproc,&*indices);CHKERRQ(ierr); 1548268a049cSStefano Zampini ierr = PetscCalloc1(*nproc,&*numprocs);CHKERRQ(ierr); 15496a818285SBarry Smith for (i=0; i<*nproc; i++) { 1550268a049cSStefano Zampini ierr = PetscMalloc1(bs*bnumprocs[i],&(*indices)[i]);CHKERRQ(ierr); 1551268a049cSStefano Zampini for (j=0; j<bnumprocs[i]; j++) { 15526a818285SBarry Smith for (k=0; k<bs; k++) { 15536a818285SBarry Smith (*indices)[i][j*bs+k] = bs*bindices[i][j] + k; 15546a818285SBarry Smith } 15556a818285SBarry Smith } 1556268a049cSStefano Zampini (*numprocs)[i] = bnumprocs[i]*bs; 15576a818285SBarry Smith } 1558268a049cSStefano Zampini mapping->info_free = PETSC_TRUE; 1559268a049cSStefano Zampini } else { 1560268a049cSStefano Zampini *numprocs = bnumprocs; 1561268a049cSStefano Zampini *indices = bindices; 15626a818285SBarry Smith } 15636a818285SBarry Smith PetscFunctionReturn(0); 15646a818285SBarry Smith } 15656a818285SBarry Smith 156607b52d57SBarry Smith /*@C 156707b52d57SBarry Smith ISLocalToGlobalMappingRestoreInfo - Frees the memory allocated by ISLocalToGlobalMappingGetInfo() 156889d82c54SBarry Smith 156907b52d57SBarry Smith Collective on ISLocalToGlobalMapping 157007b52d57SBarry Smith 157107b52d57SBarry Smith Input Parameters: 157207b52d57SBarry Smith . mapping - the mapping from local to global indexing 157307b52d57SBarry Smith 157407b52d57SBarry Smith Output Parameter: 157507b52d57SBarry Smith + nproc - number of processors that are connected to this one 157607b52d57SBarry Smith . proc - neighboring processors 157707b52d57SBarry Smith . numproc - number of indices for each processor 157807b52d57SBarry Smith - indices - indices of local nodes shared with neighbor (sorted by global numbering) 157907b52d57SBarry Smith 158007b52d57SBarry Smith Level: advanced 158107b52d57SBarry Smith 158207b52d57SBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreateIS(), ISLocalToGlobalMappingCreate(), 158307b52d57SBarry Smith ISLocalToGlobalMappingGetInfo() 158407b52d57SBarry Smith @*/ 15857087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingRestoreInfo(ISLocalToGlobalMapping mapping,PetscInt *nproc,PetscInt *procs[],PetscInt *numprocs[],PetscInt **indices[]) 158607b52d57SBarry Smith { 15876849ba73SBarry Smith PetscErrorCode ierr; 158807b52d57SBarry Smith 158907b52d57SBarry Smith PetscFunctionBegin; 15906a818285SBarry Smith ierr = ISLocalToGlobalMappingRestoreBlockInfo(mapping,nproc,procs,numprocs,indices);CHKERRQ(ierr); 159107b52d57SBarry Smith PetscFunctionReturn(0); 159207b52d57SBarry Smith } 159386994e45SJed Brown 159486994e45SJed Brown /*@C 15951bd0b88eSStefano Zampini ISLocalToGlobalMappingGetNodeInfo - Gets the neighbor information for each node 15961bd0b88eSStefano Zampini 15971bd0b88eSStefano Zampini Collective on ISLocalToGlobalMapping 15981bd0b88eSStefano Zampini 15991bd0b88eSStefano Zampini Input Parameters: 16001bd0b88eSStefano Zampini . mapping - the mapping from local to global indexing 16011bd0b88eSStefano Zampini 16021bd0b88eSStefano Zampini Output Parameter: 16031bd0b88eSStefano Zampini + nnodes - number of local nodes (same ISLocalToGlobalMappingGetSize()) 16041bd0b88eSStefano Zampini . count - number of neighboring processors per node 16051bd0b88eSStefano Zampini - indices - indices of processes sharing the node (sorted) 16061bd0b88eSStefano Zampini 16071bd0b88eSStefano Zampini Level: advanced 16081bd0b88eSStefano Zampini 16091bd0b88eSStefano Zampini Notes: The user needs to call ISLocalToGlobalMappingRestoreInfo when the data is no longer needed. 16101bd0b88eSStefano Zampini 16111bd0b88eSStefano Zampini .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreateIS(), ISLocalToGlobalMappingCreate(), 16121bd0b88eSStefano Zampini ISLocalToGlobalMappingGetInfo(), ISLocalToGlobalMappingRestoreNodeInfo() 16131bd0b88eSStefano Zampini @*/ 16141bd0b88eSStefano Zampini PetscErrorCode ISLocalToGlobalMappingGetNodeInfo(ISLocalToGlobalMapping mapping,PetscInt *nnodes,PetscInt *count[],PetscInt **indices[]) 16151bd0b88eSStefano Zampini { 16161bd0b88eSStefano Zampini PetscInt n; 16171bd0b88eSStefano Zampini PetscErrorCode ierr; 16181bd0b88eSStefano Zampini 16191bd0b88eSStefano Zampini PetscFunctionBegin; 16201bd0b88eSStefano Zampini PetscValidHeaderSpecific(mapping,IS_LTOGM_CLASSID,1); 16211bd0b88eSStefano Zampini ierr = ISLocalToGlobalMappingGetSize(mapping,&n);CHKERRQ(ierr); 16221bd0b88eSStefano Zampini if (!mapping->info_nodec) { 16231bd0b88eSStefano Zampini PetscInt i,m,n_neigh,*neigh,*n_shared,**shared; 16241bd0b88eSStefano Zampini 1625071fcb05SBarry Smith ierr = PetscMalloc2(n+1,&mapping->info_nodec,n,&mapping->info_nodei);CHKERRQ(ierr); 16261bd0b88eSStefano Zampini ierr = ISLocalToGlobalMappingGetInfo(mapping,&n_neigh,&neigh,&n_shared,&shared);CHKERRQ(ierr); 1627071fcb05SBarry Smith for (i=0;i<n;i++) { mapping->info_nodec[i] = 1;} 1628071fcb05SBarry Smith m = n; 1629071fcb05SBarry Smith mapping->info_nodec[n] = 0; 16301bd0b88eSStefano Zampini for (i=1;i<n_neigh;i++) { 16311bd0b88eSStefano Zampini PetscInt j; 16321bd0b88eSStefano Zampini 16331bd0b88eSStefano Zampini m += n_shared[i]; 16341bd0b88eSStefano Zampini for (j=0;j<n_shared[i];j++) mapping->info_nodec[shared[i][j]] += 1; 16351bd0b88eSStefano Zampini } 16361bd0b88eSStefano Zampini if (n) { ierr = PetscMalloc1(m,&mapping->info_nodei[0]);CHKERRQ(ierr); } 16371bd0b88eSStefano Zampini for (i=1;i<n;i++) mapping->info_nodei[i] = mapping->info_nodei[i-1] + mapping->info_nodec[i-1]; 1638580bdb30SBarry Smith ierr = PetscArrayzero(mapping->info_nodec,n);CHKERRQ(ierr); 16391bd0b88eSStefano Zampini for (i=0;i<n;i++) { mapping->info_nodec[i] = 1; mapping->info_nodei[i][0] = neigh[0]; } 16401bd0b88eSStefano Zampini for (i=1;i<n_neigh;i++) { 16411bd0b88eSStefano Zampini PetscInt j; 16421bd0b88eSStefano Zampini 16431bd0b88eSStefano Zampini for (j=0;j<n_shared[i];j++) { 16441bd0b88eSStefano Zampini PetscInt k = shared[i][j]; 16451bd0b88eSStefano Zampini 16461bd0b88eSStefano Zampini mapping->info_nodei[k][mapping->info_nodec[k]] = neigh[i]; 16471bd0b88eSStefano Zampini mapping->info_nodec[k] += 1; 16481bd0b88eSStefano Zampini } 16491bd0b88eSStefano Zampini } 16501bd0b88eSStefano Zampini for (i=0;i<n;i++) { ierr = PetscSortRemoveDupsInt(&mapping->info_nodec[i],mapping->info_nodei[i]);CHKERRQ(ierr); } 16511bd0b88eSStefano Zampini ierr = ISLocalToGlobalMappingRestoreInfo(mapping,&n_neigh,&neigh,&n_shared,&shared);CHKERRQ(ierr); 16521bd0b88eSStefano Zampini } 16531bd0b88eSStefano Zampini if (nnodes) *nnodes = n; 16541bd0b88eSStefano Zampini if (count) *count = mapping->info_nodec; 16551bd0b88eSStefano Zampini if (indices) *indices = mapping->info_nodei; 16561bd0b88eSStefano Zampini PetscFunctionReturn(0); 16571bd0b88eSStefano Zampini } 16581bd0b88eSStefano Zampini 16591bd0b88eSStefano Zampini /*@C 16601bd0b88eSStefano Zampini ISLocalToGlobalMappingRestoreNodeInfo - Frees the memory allocated by ISLocalToGlobalMappingGetNodeInfo() 16611bd0b88eSStefano Zampini 16621bd0b88eSStefano Zampini Collective on ISLocalToGlobalMapping 16631bd0b88eSStefano Zampini 16641bd0b88eSStefano Zampini Input Parameters: 16651bd0b88eSStefano Zampini . mapping - the mapping from local to global indexing 16661bd0b88eSStefano Zampini 16671bd0b88eSStefano Zampini Output Parameter: 16681bd0b88eSStefano Zampini + nnodes - number of local nodes 16691bd0b88eSStefano Zampini . count - number of neighboring processors per node 16701bd0b88eSStefano Zampini - indices - indices of processes sharing the node (sorted) 16711bd0b88eSStefano Zampini 16721bd0b88eSStefano Zampini Level: advanced 16731bd0b88eSStefano Zampini 16741bd0b88eSStefano Zampini .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreateIS(), ISLocalToGlobalMappingCreate(), 16751bd0b88eSStefano Zampini ISLocalToGlobalMappingGetInfo() 16761bd0b88eSStefano Zampini @*/ 16771bd0b88eSStefano Zampini PetscErrorCode ISLocalToGlobalMappingRestoreNodeInfo(ISLocalToGlobalMapping mapping,PetscInt *nnodes,PetscInt *count[],PetscInt **indices[]) 16781bd0b88eSStefano Zampini { 16791bd0b88eSStefano Zampini PetscFunctionBegin; 16801bd0b88eSStefano Zampini PetscValidHeaderSpecific(mapping,IS_LTOGM_CLASSID,1); 16811bd0b88eSStefano Zampini if (nnodes) *nnodes = 0; 16821bd0b88eSStefano Zampini if (count) *count = NULL; 16831bd0b88eSStefano Zampini if (indices) *indices = NULL; 16841bd0b88eSStefano Zampini PetscFunctionReturn(0); 16851bd0b88eSStefano Zampini } 16861bd0b88eSStefano Zampini 16871bd0b88eSStefano Zampini /*@C 1688107e9a97SBarry Smith ISLocalToGlobalMappingGetIndices - Get global indices for every local point that is mapped 168986994e45SJed Brown 169086994e45SJed Brown Not Collective 169186994e45SJed Brown 169286994e45SJed Brown Input Arguments: 169386994e45SJed Brown . ltog - local to global mapping 169486994e45SJed Brown 169586994e45SJed Brown Output Arguments: 1696565245c5SBarry Smith . array - array of indices, the length of this array may be obtained with ISLocalToGlobalMappingGetSize() 169786994e45SJed Brown 169886994e45SJed Brown Level: advanced 169986994e45SJed Brown 170095452b02SPatrick Sanan Notes: 170195452b02SPatrick Sanan ISLocalToGlobalMappingGetSize() returns the length the this array 1702107e9a97SBarry Smith 1703107e9a97SBarry Smith .seealso: ISLocalToGlobalMappingCreate(), ISLocalToGlobalMappingApply(), ISLocalToGlobalMappingRestoreIndices(), ISLocalToGlobalMappingGetBlockIndices(), ISLocalToGlobalMappingRestoreBlockIndices() 170486994e45SJed Brown @*/ 17057087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingGetIndices(ISLocalToGlobalMapping ltog,const PetscInt **array) 170686994e45SJed Brown { 170786994e45SJed Brown PetscFunctionBegin; 170886994e45SJed Brown PetscValidHeaderSpecific(ltog,IS_LTOGM_CLASSID,1); 170986994e45SJed Brown PetscValidPointer(array,2); 171045b6f7e9SBarry Smith if (ltog->bs == 1) { 171186994e45SJed Brown *array = ltog->indices; 171245b6f7e9SBarry Smith } else { 171345b6f7e9SBarry Smith PetscInt *jj,k,i,j,n = ltog->n, bs = ltog->bs; 171445b6f7e9SBarry Smith const PetscInt *ii; 171545b6f7e9SBarry Smith PetscErrorCode ierr; 171645b6f7e9SBarry Smith 171745b6f7e9SBarry Smith ierr = PetscMalloc1(bs*n,&jj);CHKERRQ(ierr); 171845b6f7e9SBarry Smith *array = jj; 171945b6f7e9SBarry Smith k = 0; 172045b6f7e9SBarry Smith ii = ltog->indices; 172145b6f7e9SBarry Smith for (i=0; i<n; i++) 172245b6f7e9SBarry Smith for (j=0; j<bs; j++) 172345b6f7e9SBarry Smith jj[k++] = bs*ii[i] + j; 172445b6f7e9SBarry Smith } 172586994e45SJed Brown PetscFunctionReturn(0); 172686994e45SJed Brown } 172786994e45SJed Brown 172886994e45SJed Brown /*@C 1729193a2b41SJulian Andrej ISLocalToGlobalMappingRestoreIndices - Restore indices obtained with ISLocalToGlobalMappingGetIndices() 173086994e45SJed Brown 173186994e45SJed Brown Not Collective 173286994e45SJed Brown 173386994e45SJed Brown Input Arguments: 173486994e45SJed Brown + ltog - local to global mapping 173586994e45SJed Brown - array - array of indices 173686994e45SJed Brown 173786994e45SJed Brown Level: advanced 173886994e45SJed Brown 173986994e45SJed Brown .seealso: ISLocalToGlobalMappingCreate(), ISLocalToGlobalMappingApply(), ISLocalToGlobalMappingGetIndices() 174086994e45SJed Brown @*/ 17417087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingRestoreIndices(ISLocalToGlobalMapping ltog,const PetscInt **array) 174286994e45SJed Brown { 174386994e45SJed Brown PetscFunctionBegin; 174486994e45SJed Brown PetscValidHeaderSpecific(ltog,IS_LTOGM_CLASSID,1); 174586994e45SJed Brown PetscValidPointer(array,2); 174645b6f7e9SBarry Smith if (ltog->bs == 1 && *array != ltog->indices) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_BADPTR,"Trying to return mismatched pointer"); 174745b6f7e9SBarry Smith 174845b6f7e9SBarry Smith if (ltog->bs > 1) { 174945b6f7e9SBarry Smith PetscErrorCode ierr; 175045b6f7e9SBarry Smith ierr = PetscFree(*(void**)array);CHKERRQ(ierr); 175145b6f7e9SBarry Smith } 175245b6f7e9SBarry Smith PetscFunctionReturn(0); 175345b6f7e9SBarry Smith } 175445b6f7e9SBarry Smith 175545b6f7e9SBarry Smith /*@C 175645b6f7e9SBarry Smith ISLocalToGlobalMappingGetBlockIndices - Get global indices for every local block 175745b6f7e9SBarry Smith 175845b6f7e9SBarry Smith Not Collective 175945b6f7e9SBarry Smith 176045b6f7e9SBarry Smith Input Arguments: 176145b6f7e9SBarry Smith . ltog - local to global mapping 176245b6f7e9SBarry Smith 176345b6f7e9SBarry Smith Output Arguments: 176445b6f7e9SBarry Smith . array - array of indices 176545b6f7e9SBarry Smith 176645b6f7e9SBarry Smith Level: advanced 176745b6f7e9SBarry Smith 176845b6f7e9SBarry Smith .seealso: ISLocalToGlobalMappingCreate(), ISLocalToGlobalMappingApply(), ISLocalToGlobalMappingRestoreBlockIndices() 176945b6f7e9SBarry Smith @*/ 177045b6f7e9SBarry Smith PetscErrorCode ISLocalToGlobalMappingGetBlockIndices(ISLocalToGlobalMapping ltog,const PetscInt **array) 177145b6f7e9SBarry Smith { 177245b6f7e9SBarry Smith PetscFunctionBegin; 177345b6f7e9SBarry Smith PetscValidHeaderSpecific(ltog,IS_LTOGM_CLASSID,1); 177445b6f7e9SBarry Smith PetscValidPointer(array,2); 177545b6f7e9SBarry Smith *array = ltog->indices; 177645b6f7e9SBarry Smith PetscFunctionReturn(0); 177745b6f7e9SBarry Smith } 177845b6f7e9SBarry Smith 177945b6f7e9SBarry Smith /*@C 178045b6f7e9SBarry Smith ISLocalToGlobalMappingRestoreBlockIndices - Restore indices obtained with ISLocalToGlobalMappingGetBlockIndices() 178145b6f7e9SBarry Smith 178245b6f7e9SBarry Smith Not Collective 178345b6f7e9SBarry Smith 178445b6f7e9SBarry Smith Input Arguments: 178545b6f7e9SBarry Smith + ltog - local to global mapping 178645b6f7e9SBarry Smith - array - array of indices 178745b6f7e9SBarry Smith 178845b6f7e9SBarry Smith Level: advanced 178945b6f7e9SBarry Smith 179045b6f7e9SBarry Smith .seealso: ISLocalToGlobalMappingCreate(), ISLocalToGlobalMappingApply(), ISLocalToGlobalMappingGetIndices() 179145b6f7e9SBarry Smith @*/ 179245b6f7e9SBarry Smith PetscErrorCode ISLocalToGlobalMappingRestoreBlockIndices(ISLocalToGlobalMapping ltog,const PetscInt **array) 179345b6f7e9SBarry Smith { 179445b6f7e9SBarry Smith PetscFunctionBegin; 179545b6f7e9SBarry Smith PetscValidHeaderSpecific(ltog,IS_LTOGM_CLASSID,1); 179645b6f7e9SBarry Smith PetscValidPointer(array,2); 179786994e45SJed Brown if (*array != ltog->indices) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_BADPTR,"Trying to return mismatched pointer"); 17980298fd71SBarry Smith *array = NULL; 179986994e45SJed Brown PetscFunctionReturn(0); 180086994e45SJed Brown } 1801f7efa3c7SJed Brown 1802f7efa3c7SJed Brown /*@C 1803f7efa3c7SJed Brown ISLocalToGlobalMappingConcatenate - Create a new mapping that concatenates a list of mappings 1804f7efa3c7SJed Brown 1805f7efa3c7SJed Brown Not Collective 1806f7efa3c7SJed Brown 1807f7efa3c7SJed Brown Input Arguments: 1808f7efa3c7SJed Brown + comm - communicator for the new mapping, must contain the communicator of every mapping to concatenate 1809f7efa3c7SJed Brown . n - number of mappings to concatenate 1810f7efa3c7SJed Brown - ltogs - local to global mappings 1811f7efa3c7SJed Brown 1812f7efa3c7SJed Brown Output Arguments: 1813f7efa3c7SJed Brown . ltogcat - new mapping 1814f7efa3c7SJed Brown 18159d90f715SBarry Smith Note: this currently always returns a mapping with block size of 1 18169d90f715SBarry Smith 18179d90f715SBarry Smith Developer Note: If all the input mapping have the same block size we could easily handle that as a special case 18189d90f715SBarry Smith 1819f7efa3c7SJed Brown Level: advanced 1820f7efa3c7SJed Brown 1821f7efa3c7SJed Brown .seealso: ISLocalToGlobalMappingCreate() 1822f7efa3c7SJed Brown @*/ 1823f7efa3c7SJed Brown PetscErrorCode ISLocalToGlobalMappingConcatenate(MPI_Comm comm,PetscInt n,const ISLocalToGlobalMapping ltogs[],ISLocalToGlobalMapping *ltogcat) 1824f7efa3c7SJed Brown { 1825f7efa3c7SJed Brown PetscInt i,cnt,m,*idx; 1826f7efa3c7SJed Brown PetscErrorCode ierr; 1827f7efa3c7SJed Brown 1828f7efa3c7SJed Brown PetscFunctionBegin; 1829f7efa3c7SJed Brown if (n < 0) SETERRQ1(comm,PETSC_ERR_ARG_OUTOFRANGE,"Must have a non-negative number of mappings, given %D",n); 1830f7efa3c7SJed Brown if (n > 0) PetscValidPointer(ltogs,3); 1831f7efa3c7SJed Brown for (i=0; i<n; i++) PetscValidHeaderSpecific(ltogs[i],IS_LTOGM_CLASSID,3); 1832f7efa3c7SJed Brown PetscValidPointer(ltogcat,4); 1833f7efa3c7SJed Brown for (cnt=0,i=0; i<n; i++) { 1834f7efa3c7SJed Brown ierr = ISLocalToGlobalMappingGetSize(ltogs[i],&m);CHKERRQ(ierr); 1835f7efa3c7SJed Brown cnt += m; 1836f7efa3c7SJed Brown } 1837785e854fSJed Brown ierr = PetscMalloc1(cnt,&idx);CHKERRQ(ierr); 1838f7efa3c7SJed Brown for (cnt=0,i=0; i<n; i++) { 1839f7efa3c7SJed Brown const PetscInt *subidx; 1840f7efa3c7SJed Brown ierr = ISLocalToGlobalMappingGetSize(ltogs[i],&m);CHKERRQ(ierr); 1841f7efa3c7SJed Brown ierr = ISLocalToGlobalMappingGetIndices(ltogs[i],&subidx);CHKERRQ(ierr); 1842580bdb30SBarry Smith ierr = PetscArraycpy(&idx[cnt],subidx,m);CHKERRQ(ierr); 1843f7efa3c7SJed Brown ierr = ISLocalToGlobalMappingRestoreIndices(ltogs[i],&subidx);CHKERRQ(ierr); 1844f7efa3c7SJed Brown cnt += m; 1845f7efa3c7SJed Brown } 1846f0413b6fSBarry Smith ierr = ISLocalToGlobalMappingCreate(comm,1,cnt,idx,PETSC_OWN_POINTER,ltogcat);CHKERRQ(ierr); 1847f7efa3c7SJed Brown PetscFunctionReturn(0); 1848f7efa3c7SJed Brown } 184904a59952SBarry Smith 1850413f72f0SBarry Smith /*MC 1851413f72f0SBarry Smith ISLOCALTOGLOBALMAPPINGBASIC - basic implementation of the ISLocalToGlobalMapping object. When ISGlobalToLocalMappingApply() is 1852413f72f0SBarry Smith used this is good for only small and moderate size problems. 1853413f72f0SBarry Smith 1854413f72f0SBarry Smith Options Database Keys: 1855a2b725a8SWilliam Gropp . -islocaltoglobalmapping_type basic - select this method 1856413f72f0SBarry Smith 1857413f72f0SBarry Smith Level: beginner 1858413f72f0SBarry Smith 1859413f72f0SBarry Smith .seealso: ISLocalToGlobalMappingCreate(), ISLocalToGlobalMappingSetType(), ISLOCALTOGLOBALMAPPINGHASH 1860413f72f0SBarry Smith M*/ 1861413f72f0SBarry Smith PETSC_EXTERN PetscErrorCode ISLocalToGlobalMappingCreate_Basic(ISLocalToGlobalMapping ltog) 1862413f72f0SBarry Smith { 1863413f72f0SBarry Smith PetscFunctionBegin; 1864413f72f0SBarry Smith ltog->ops->globaltolocalmappingapply = ISGlobalToLocalMappingApply_Basic; 1865413f72f0SBarry Smith ltog->ops->globaltolocalmappingsetup = ISGlobalToLocalMappingSetUp_Basic; 1866413f72f0SBarry Smith ltog->ops->globaltolocalmappingapplyblock = ISGlobalToLocalMappingApplyBlock_Basic; 1867413f72f0SBarry Smith ltog->ops->destroy = ISLocalToGlobalMappingDestroy_Basic; 1868413f72f0SBarry Smith PetscFunctionReturn(0); 1869413f72f0SBarry Smith } 1870413f72f0SBarry Smith 1871413f72f0SBarry Smith /*MC 1872413f72f0SBarry Smith ISLOCALTOGLOBALMAPPINGHASH - hash implementation of the ISLocalToGlobalMapping object. When ISGlobalToLocalMappingApply() is 1873ed56e8eaSBarry Smith used this is good for large memory problems. 1874413f72f0SBarry Smith 1875413f72f0SBarry Smith Options Database Keys: 1876a2b725a8SWilliam Gropp . -islocaltoglobalmapping_type hash - select this method 1877413f72f0SBarry Smith 1878ed56e8eaSBarry Smith 187995452b02SPatrick Sanan Notes: 188095452b02SPatrick Sanan This is selected automatically for large problems if the user does not set the type. 1881ed56e8eaSBarry Smith 1882413f72f0SBarry Smith Level: beginner 1883413f72f0SBarry Smith 1884413f72f0SBarry Smith .seealso: ISLocalToGlobalMappingCreate(), ISLocalToGlobalMappingSetType(), ISLOCALTOGLOBALMAPPINGHASH 1885413f72f0SBarry Smith M*/ 1886413f72f0SBarry Smith PETSC_EXTERN PetscErrorCode ISLocalToGlobalMappingCreate_Hash(ISLocalToGlobalMapping ltog) 1887413f72f0SBarry Smith { 1888413f72f0SBarry Smith PetscFunctionBegin; 1889413f72f0SBarry Smith ltog->ops->globaltolocalmappingapply = ISGlobalToLocalMappingApply_Hash; 1890413f72f0SBarry Smith ltog->ops->globaltolocalmappingsetup = ISGlobalToLocalMappingSetUp_Hash; 1891413f72f0SBarry Smith ltog->ops->globaltolocalmappingapplyblock = ISGlobalToLocalMappingApplyBlock_Hash; 1892413f72f0SBarry Smith ltog->ops->destroy = ISLocalToGlobalMappingDestroy_Hash; 1893413f72f0SBarry Smith PetscFunctionReturn(0); 1894413f72f0SBarry Smith } 1895413f72f0SBarry Smith 1896413f72f0SBarry Smith 1897413f72f0SBarry Smith /*@C 1898413f72f0SBarry Smith ISLocalToGlobalMappingRegister - Adds a method for applying a global to local mapping with an ISLocalToGlobalMapping 1899413f72f0SBarry Smith 1900413f72f0SBarry Smith Not Collective 1901413f72f0SBarry Smith 1902413f72f0SBarry Smith Input Parameters: 1903413f72f0SBarry Smith + sname - name of a new method 1904413f72f0SBarry Smith - routine_create - routine to create method context 1905413f72f0SBarry Smith 1906413f72f0SBarry Smith Notes: 1907ed56e8eaSBarry Smith ISLocalToGlobalMappingRegister() may be called multiple times to add several user-defined mappings. 1908413f72f0SBarry Smith 1909413f72f0SBarry Smith Sample usage: 1910413f72f0SBarry Smith .vb 1911413f72f0SBarry Smith ISLocalToGlobalMappingRegister("my_mapper",MyCreate); 1912413f72f0SBarry Smith .ve 1913413f72f0SBarry Smith 1914ed56e8eaSBarry Smith Then, your mapping can be chosen with the procedural interface via 1915413f72f0SBarry Smith $ ISLocalToGlobalMappingSetType(ltog,"my_mapper") 1916413f72f0SBarry Smith or at runtime via the option 1917ed56e8eaSBarry Smith $ -islocaltoglobalmapping_type my_mapper 1918413f72f0SBarry Smith 1919413f72f0SBarry Smith Level: advanced 1920413f72f0SBarry Smith 1921413f72f0SBarry Smith .seealso: ISLocalToGlobalMappingRegisterAll(), ISLocalToGlobalMappingRegisterDestroy(), ISLOCALTOGLOBALMAPPINGBASIC, ISLOCALTOGLOBALMAPPINGHASH 1922413f72f0SBarry Smith 1923413f72f0SBarry Smith @*/ 1924413f72f0SBarry Smith PetscErrorCode ISLocalToGlobalMappingRegister(const char sname[],PetscErrorCode (*function)(ISLocalToGlobalMapping)) 1925413f72f0SBarry Smith { 1926413f72f0SBarry Smith PetscErrorCode ierr; 1927413f72f0SBarry Smith 1928413f72f0SBarry Smith PetscFunctionBegin; 19291d36bdfdSBarry Smith ierr = ISInitializePackage();CHKERRQ(ierr); 1930413f72f0SBarry Smith ierr = PetscFunctionListAdd(&ISLocalToGlobalMappingList,sname,function);CHKERRQ(ierr); 1931413f72f0SBarry Smith PetscFunctionReturn(0); 1932413f72f0SBarry Smith } 1933413f72f0SBarry Smith 1934413f72f0SBarry Smith /*@C 1935ed56e8eaSBarry Smith ISLocalToGlobalMappingSetType - Builds ISLocalToGlobalMapping for a particular global to local mapping approach. 1936413f72f0SBarry Smith 1937413f72f0SBarry Smith Logically Collective on ISLocalToGlobalMapping 1938413f72f0SBarry Smith 1939413f72f0SBarry Smith Input Parameters: 1940413f72f0SBarry Smith + ltog - the ISLocalToGlobalMapping object 1941413f72f0SBarry Smith - type - a known method 1942413f72f0SBarry Smith 1943413f72f0SBarry Smith Options Database Key: 1944ed56e8eaSBarry Smith . -islocaltoglobalmapping_type <method> - Sets the method; use -help for a list 1945413f72f0SBarry Smith of available methods (for instance, basic or hash) 1946413f72f0SBarry Smith 1947413f72f0SBarry Smith Notes: 1948413f72f0SBarry Smith See "petsc/include/petscis.h" for available methods 1949413f72f0SBarry Smith 1950413f72f0SBarry Smith Normally, it is best to use the ISLocalToGlobalMappingSetFromOptions() command and 1951413f72f0SBarry Smith then set the ISLocalToGlobalMapping type from the options database rather than by using 1952413f72f0SBarry Smith this routine. 1953413f72f0SBarry Smith 1954413f72f0SBarry Smith Level: intermediate 1955413f72f0SBarry Smith 1956413f72f0SBarry Smith Developer Note: ISLocalToGlobalMappingRegister() is used to add new types to ISLocalToGlobalMappingList from which they 1957413f72f0SBarry Smith are accessed by ISLocalToGlobalMappingSetType(). 1958413f72f0SBarry Smith 1959413f72f0SBarry Smith .seealso: PCSetType(), ISLocalToGlobalMappingType, ISLocalToGlobalMappingRegister(), ISLocalToGlobalMappingCreate() 1960413f72f0SBarry Smith 1961413f72f0SBarry Smith @*/ 1962413f72f0SBarry Smith PetscErrorCode ISLocalToGlobalMappingSetType(ISLocalToGlobalMapping ltog, ISLocalToGlobalMappingType type) 1963413f72f0SBarry Smith { 1964413f72f0SBarry Smith PetscErrorCode ierr,(*r)(ISLocalToGlobalMapping); 1965413f72f0SBarry Smith PetscBool match; 1966413f72f0SBarry Smith 1967413f72f0SBarry Smith PetscFunctionBegin; 1968413f72f0SBarry Smith PetscValidHeaderSpecific(ltog,IS_LTOGM_CLASSID,1); 1969413f72f0SBarry Smith PetscValidCharPointer(type,2); 1970413f72f0SBarry Smith 1971413f72f0SBarry Smith ierr = PetscObjectTypeCompare((PetscObject)ltog,type,&match);CHKERRQ(ierr); 1972413f72f0SBarry Smith if (match) PetscFunctionReturn(0); 1973413f72f0SBarry Smith 1974413f72f0SBarry Smith ierr = PetscFunctionListFind(ISLocalToGlobalMappingList,type,&r);CHKERRQ(ierr); 1975413f72f0SBarry Smith if (!r) SETERRQ1(PetscObjectComm((PetscObject)ltog),PETSC_ERR_ARG_UNKNOWN_TYPE,"Unable to find requested ISLocalToGlobalMapping type %s",type); 1976413f72f0SBarry Smith /* Destroy the previous private LTOG context */ 1977413f72f0SBarry Smith if (ltog->ops->destroy) { 1978413f72f0SBarry Smith ierr = (*ltog->ops->destroy)(ltog);CHKERRQ(ierr); 1979413f72f0SBarry Smith ltog->ops->destroy = NULL; 1980413f72f0SBarry Smith } 1981413f72f0SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)ltog,type);CHKERRQ(ierr); 1982413f72f0SBarry Smith ierr = (*r)(ltog);CHKERRQ(ierr); 1983413f72f0SBarry Smith PetscFunctionReturn(0); 1984413f72f0SBarry Smith } 1985413f72f0SBarry Smith 1986413f72f0SBarry Smith PetscBool ISLocalToGlobalMappingRegisterAllCalled = PETSC_FALSE; 1987413f72f0SBarry Smith 1988413f72f0SBarry Smith /*@C 1989413f72f0SBarry Smith ISLocalToGlobalMappingRegisterAll - Registers all of the local to global mapping components in the IS package. 1990413f72f0SBarry Smith 1991413f72f0SBarry Smith Not Collective 1992413f72f0SBarry Smith 1993413f72f0SBarry Smith Level: advanced 1994413f72f0SBarry Smith 1995413f72f0SBarry Smith .seealso: ISRegister(), ISLocalToGlobalRegister() 1996413f72f0SBarry Smith @*/ 1997413f72f0SBarry Smith PetscErrorCode ISLocalToGlobalMappingRegisterAll(void) 1998413f72f0SBarry Smith { 1999413f72f0SBarry Smith PetscErrorCode ierr; 2000413f72f0SBarry Smith 2001413f72f0SBarry Smith PetscFunctionBegin; 2002413f72f0SBarry Smith if (ISLocalToGlobalMappingRegisterAllCalled) PetscFunctionReturn(0); 2003413f72f0SBarry Smith ISLocalToGlobalMappingRegisterAllCalled = PETSC_TRUE; 2004413f72f0SBarry Smith 2005413f72f0SBarry Smith ierr = ISLocalToGlobalMappingRegister(ISLOCALTOGLOBALMAPPINGBASIC, ISLocalToGlobalMappingCreate_Basic);CHKERRQ(ierr); 2006413f72f0SBarry Smith ierr = ISLocalToGlobalMappingRegister(ISLOCALTOGLOBALMAPPINGHASH, ISLocalToGlobalMappingCreate_Hash);CHKERRQ(ierr); 2007413f72f0SBarry Smith PetscFunctionReturn(0); 2008413f72f0SBarry Smith } 2009