12362add9SBarry Smith 2af0996ceSBarry Smith #include <petsc/private/isimpl.h> /*I "petscis.h" I*/ 3bbf7bc21SLisandro Dalcin #include <petsc/private/hash.h> 40c312b8eSJed Brown #include <petscsf.h> 5665c2dedSJed Brown #include <petscviewer.h> 62362add9SBarry Smith 77087cfbeSBarry Smith PetscClassId IS_LTOGM_CLASSID; 8268a049cSStefano Zampini static PetscErrorCode ISLocalToGlobalMappingGetBlockInfo_Private(ISLocalToGlobalMapping,PetscInt*,PetscInt**,PetscInt**,PetscInt***); 98e58c17dSMatthew Knepley 10413f72f0SBarry Smith typedef struct { 11413f72f0SBarry Smith PetscInt *globals; 12413f72f0SBarry Smith } ISLocalToGlobalMapping_Basic; 13413f72f0SBarry Smith 14413f72f0SBarry Smith typedef struct { 15413f72f0SBarry Smith PetscHashI globalht; 16413f72f0SBarry Smith } ISLocalToGlobalMapping_Hash; 17413f72f0SBarry Smith 18413f72f0SBarry Smith 19413f72f0SBarry Smith /* -----------------------------------------------------------------------------------------*/ 20413f72f0SBarry Smith 21413f72f0SBarry Smith /* 22413f72f0SBarry Smith Creates the global mapping information in the ISLocalToGlobalMapping structure 23413f72f0SBarry Smith 24413f72f0SBarry Smith If the user has not selected how to handle the global to local mapping then use HASH for "large" problems 25413f72f0SBarry Smith */ 26413f72f0SBarry Smith static PetscErrorCode ISGlobalToLocalMappingSetUp(ISLocalToGlobalMapping mapping) 27413f72f0SBarry Smith { 28413f72f0SBarry Smith PetscInt i,*idx = mapping->indices,n = mapping->n,end,start; 29413f72f0SBarry Smith PetscErrorCode ierr; 30413f72f0SBarry Smith 31413f72f0SBarry Smith PetscFunctionBegin; 32413f72f0SBarry Smith if (mapping->data) PetscFunctionReturn(0); 33413f72f0SBarry Smith end = 0; 34413f72f0SBarry Smith start = PETSC_MAX_INT; 35413f72f0SBarry Smith 36413f72f0SBarry Smith for (i=0; i<n; i++) { 37413f72f0SBarry Smith if (idx[i] < 0) continue; 38413f72f0SBarry Smith if (idx[i] < start) start = idx[i]; 39413f72f0SBarry Smith if (idx[i] > end) end = idx[i]; 40413f72f0SBarry Smith } 41413f72f0SBarry Smith if (start > end) {start = 0; end = -1;} 42413f72f0SBarry Smith mapping->globalstart = start; 43413f72f0SBarry Smith mapping->globalend = end; 44413f72f0SBarry Smith if (!((PetscObject)mapping)->type_name) { 45413f72f0SBarry Smith if ((end - start) > PetscMax(4*n,1000000)) { 467f79407eSBarry Smith ierr = ISLocalToGlobalMappingSetType(mapping,ISLOCALTOGLOBALMAPPINGHASH);CHKERRQ(ierr); 47413f72f0SBarry Smith } else { 487f79407eSBarry Smith ierr = ISLocalToGlobalMappingSetType(mapping,ISLOCALTOGLOBALMAPPINGBASIC);CHKERRQ(ierr); 49413f72f0SBarry Smith } 50413f72f0SBarry Smith } 51413f72f0SBarry Smith ierr = (*mapping->ops->globaltolocalmappingsetup)(mapping);CHKERRQ(ierr); 52413f72f0SBarry Smith PetscFunctionReturn(0); 53413f72f0SBarry Smith } 54413f72f0SBarry Smith 55413f72f0SBarry Smith static PetscErrorCode ISGlobalToLocalMappingSetUp_Basic(ISLocalToGlobalMapping mapping) 56413f72f0SBarry Smith { 57413f72f0SBarry Smith PetscErrorCode ierr; 58413f72f0SBarry Smith PetscInt i,*idx = mapping->indices,n = mapping->n,end,start,*globals; 59413f72f0SBarry Smith ISLocalToGlobalMapping_Basic *map; 60413f72f0SBarry Smith 61413f72f0SBarry Smith PetscFunctionBegin; 62413f72f0SBarry Smith start = mapping->globalstart; 63413f72f0SBarry Smith end = mapping->globalend; 64413f72f0SBarry Smith ierr = PetscNew(&map);CHKERRQ(ierr); 65413f72f0SBarry Smith ierr = PetscMalloc1(end-start+2,&globals);CHKERRQ(ierr); 66413f72f0SBarry Smith map->globals = globals; 67413f72f0SBarry Smith for (i=0; i<end-start+1; i++) globals[i] = -1; 68413f72f0SBarry Smith for (i=0; i<n; i++) { 69413f72f0SBarry Smith if (idx[i] < 0) continue; 70413f72f0SBarry Smith globals[idx[i] - start] = i; 71413f72f0SBarry Smith } 72413f72f0SBarry Smith mapping->data = (void*)map; 73413f72f0SBarry Smith ierr = PetscLogObjectMemory((PetscObject)mapping,(end-start+1)*sizeof(PetscInt));CHKERRQ(ierr); 74413f72f0SBarry Smith PetscFunctionReturn(0); 75413f72f0SBarry Smith } 76413f72f0SBarry Smith 77413f72f0SBarry Smith static PetscErrorCode ISGlobalToLocalMappingSetUp_Hash(ISLocalToGlobalMapping mapping) 78413f72f0SBarry Smith { 79413f72f0SBarry Smith PetscErrorCode ierr; 80413f72f0SBarry Smith PetscInt i,*idx = mapping->indices,n = mapping->n; 81413f72f0SBarry Smith ISLocalToGlobalMapping_Hash *map; 82413f72f0SBarry Smith 83413f72f0SBarry Smith PetscFunctionBegin; 84413f72f0SBarry Smith ierr = PetscNew(&map);CHKERRQ(ierr); 85413f72f0SBarry Smith PetscHashICreate(map->globalht); 86413f72f0SBarry Smith for (i=0; i<n; i++ ) { 87413f72f0SBarry Smith if (idx[i] < 0) continue; 88413f72f0SBarry Smith PetscHashIAdd(map->globalht, idx[i], i); 89413f72f0SBarry Smith } 90413f72f0SBarry Smith mapping->data = (void*)map; 91413f72f0SBarry Smith ierr = PetscLogObjectMemory((PetscObject)mapping,2*n*sizeof(PetscInt));CHKERRQ(ierr); 92413f72f0SBarry Smith PetscFunctionReturn(0); 93413f72f0SBarry Smith } 94413f72f0SBarry Smith 95413f72f0SBarry Smith static PetscErrorCode ISLocalToGlobalMappingDestroy_Basic(ISLocalToGlobalMapping mapping) 96413f72f0SBarry Smith { 97413f72f0SBarry Smith PetscErrorCode ierr; 98413f72f0SBarry Smith ISLocalToGlobalMapping_Basic *map = (ISLocalToGlobalMapping_Basic *)mapping->data; 99413f72f0SBarry Smith 100413f72f0SBarry Smith PetscFunctionBegin; 101413f72f0SBarry Smith if (!map) PetscFunctionReturn(0); 102413f72f0SBarry Smith ierr = PetscFree(map->globals);CHKERRQ(ierr); 103413f72f0SBarry Smith ierr = PetscFree(mapping->data);CHKERRQ(ierr); 104413f72f0SBarry Smith PetscFunctionReturn(0); 105413f72f0SBarry Smith } 106413f72f0SBarry Smith 107413f72f0SBarry Smith static PetscErrorCode ISLocalToGlobalMappingDestroy_Hash(ISLocalToGlobalMapping mapping) 108413f72f0SBarry Smith { 109413f72f0SBarry Smith PetscErrorCode ierr; 110413f72f0SBarry Smith ISLocalToGlobalMapping_Hash *map = (ISLocalToGlobalMapping_Hash*)mapping->data; 111413f72f0SBarry Smith 112413f72f0SBarry Smith PetscFunctionBegin; 113413f72f0SBarry Smith if (!map) PetscFunctionReturn(0); 114413f72f0SBarry Smith PetscHashIDestroy(map->globalht); 115413f72f0SBarry Smith ierr = PetscFree(mapping->data);CHKERRQ(ierr); 116413f72f0SBarry Smith PetscFunctionReturn(0); 117413f72f0SBarry Smith } 118413f72f0SBarry Smith 119413f72f0SBarry Smith #define GTOLTYPE _Basic 120413f72f0SBarry Smith #define GTOLNAME _Basic 121541bf97eSAdrian Croucher #define GTOLBS mapping->bs 122413f72f0SBarry Smith #define GTOL(g, local) do { \ 123413f72f0SBarry Smith local = map->globals[g/bs - start]; \ 124413f72f0SBarry Smith local = bs*local + (g % bs); \ 125413f72f0SBarry Smith } while (0) 126541bf97eSAdrian Croucher 127413f72f0SBarry Smith #include <../src/vec/is/utils/isltog.h> 128413f72f0SBarry Smith 129413f72f0SBarry Smith #define GTOLTYPE _Basic 130413f72f0SBarry Smith #define GTOLNAME Block_Basic 131541bf97eSAdrian Croucher #define GTOLBS 1 132413f72f0SBarry Smith #define GTOL(g, local) do { \ 133413f72f0SBarry Smith local = map->globals[g - start]; \ 134413f72f0SBarry Smith } while (0) 135413f72f0SBarry Smith #include <../src/vec/is/utils/isltog.h> 136413f72f0SBarry Smith 137413f72f0SBarry Smith #define GTOLTYPE _Hash 138413f72f0SBarry Smith #define GTOLNAME _Hash 139541bf97eSAdrian Croucher #define GTOLBS mapping->bs 140413f72f0SBarry Smith #define GTOL(g, local) do { \ 141413f72f0SBarry Smith PetscHashIMap(map->globalht,g/bs,local); \ 142413f72f0SBarry Smith local = bs*local + (g % bs); \ 143413f72f0SBarry Smith } while (0) 144413f72f0SBarry Smith #include <../src/vec/is/utils/isltog.h> 145413f72f0SBarry Smith 146413f72f0SBarry Smith #define GTOLTYPE _Hash 147413f72f0SBarry Smith #define GTOLNAME Block_Hash 148541bf97eSAdrian Croucher #define GTOLBS 1 149413f72f0SBarry Smith #define GTOL(g, local) do { \ 150413f72f0SBarry Smith PetscHashIMap(map->globalht,g,local); \ 151413f72f0SBarry Smith } while (0) 152413f72f0SBarry Smith #include <../src/vec/is/utils/isltog.h> 153413f72f0SBarry Smith 1546658fb44Sstefano_zampini /*@ 1556658fb44Sstefano_zampini ISLocalToGlobalMappingDuplicate - Duplicates the local to global mapping object 1566658fb44Sstefano_zampini 1576658fb44Sstefano_zampini Not Collective 1586658fb44Sstefano_zampini 1596658fb44Sstefano_zampini Input Parameter: 1606658fb44Sstefano_zampini . ltog - local to global mapping 1616658fb44Sstefano_zampini 1626658fb44Sstefano_zampini Output Parameter: 1636658fb44Sstefano_zampini . nltog - the duplicated local to global mapping 1646658fb44Sstefano_zampini 1656658fb44Sstefano_zampini Level: advanced 1666658fb44Sstefano_zampini 1676658fb44Sstefano_zampini Concepts: mapping^local to global 1686658fb44Sstefano_zampini 1696658fb44Sstefano_zampini .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreate() 1706658fb44Sstefano_zampini @*/ 1716658fb44Sstefano_zampini PetscErrorCode ISLocalToGlobalMappingDuplicate(ISLocalToGlobalMapping ltog,ISLocalToGlobalMapping* nltog) 1726658fb44Sstefano_zampini { 1736658fb44Sstefano_zampini PetscErrorCode ierr; 1746658fb44Sstefano_zampini 1756658fb44Sstefano_zampini PetscFunctionBegin; 1766658fb44Sstefano_zampini PetscValidHeaderSpecific(ltog,IS_LTOGM_CLASSID,1); 1776658fb44Sstefano_zampini ierr = ISLocalToGlobalMappingCreate(PetscObjectComm((PetscObject)ltog),ltog->bs,ltog->n,ltog->indices,PETSC_COPY_VALUES,nltog);CHKERRQ(ierr); 1786658fb44Sstefano_zampini PetscFunctionReturn(0); 1796658fb44Sstefano_zampini } 1806658fb44Sstefano_zampini 181565245c5SBarry Smith /*@ 182107e9a97SBarry Smith ISLocalToGlobalMappingGetSize - Gets the local size of a local to global mapping 1833b9aefa3SBarry Smith 1843b9aefa3SBarry Smith Not Collective 1853b9aefa3SBarry Smith 1863b9aefa3SBarry Smith Input Parameter: 1873b9aefa3SBarry Smith . ltog - local to global mapping 1883b9aefa3SBarry Smith 1893b9aefa3SBarry Smith Output Parameter: 190107e9a97SBarry Smith . n - the number of entries in the local mapping, ISLocalToGlobalMappingGetIndices() returns an array of this length 1913b9aefa3SBarry Smith 1923b9aefa3SBarry Smith Level: advanced 1933b9aefa3SBarry Smith 194273d9f13SBarry Smith Concepts: mapping^local to global 1953b9aefa3SBarry Smith 1963b9aefa3SBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreate() 1973b9aefa3SBarry Smith @*/ 1987087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingGetSize(ISLocalToGlobalMapping mapping,PetscInt *n) 1993b9aefa3SBarry Smith { 2003b9aefa3SBarry Smith PetscFunctionBegin; 2010700a824SBarry Smith PetscValidHeaderSpecific(mapping,IS_LTOGM_CLASSID,1); 2024482741eSBarry Smith PetscValidIntPointer(n,2); 203107e9a97SBarry Smith *n = mapping->bs*mapping->n; 2043b9aefa3SBarry Smith PetscFunctionReturn(0); 2053b9aefa3SBarry Smith } 2063b9aefa3SBarry Smith 2075a5d4f66SBarry Smith /*@C 2085a5d4f66SBarry Smith ISLocalToGlobalMappingView - View a local to global mapping 2095a5d4f66SBarry Smith 210b9cd556bSLois Curfman McInnes Not Collective 211b9cd556bSLois Curfman McInnes 2125a5d4f66SBarry Smith Input Parameters: 2133b9aefa3SBarry Smith + ltog - local to global mapping 2143b9aefa3SBarry Smith - viewer - viewer 2155a5d4f66SBarry Smith 216a997ad1aSLois Curfman McInnes Level: advanced 217a997ad1aSLois Curfman McInnes 218273d9f13SBarry Smith Concepts: mapping^local to global 2195a5d4f66SBarry Smith 2205a5d4f66SBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreate() 2215a5d4f66SBarry Smith @*/ 2227087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingView(ISLocalToGlobalMapping mapping,PetscViewer viewer) 2235a5d4f66SBarry Smith { 22432dcc486SBarry Smith PetscInt i; 22532dcc486SBarry Smith PetscMPIInt rank; 226ace3abfcSBarry Smith PetscBool iascii; 2276849ba73SBarry Smith PetscErrorCode ierr; 2285a5d4f66SBarry Smith 2295a5d4f66SBarry Smith PetscFunctionBegin; 2300700a824SBarry Smith PetscValidHeaderSpecific(mapping,IS_LTOGM_CLASSID,1); 2313050cee2SBarry Smith if (!viewer) { 232ce94432eSBarry Smith ierr = PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject)mapping),&viewer);CHKERRQ(ierr); 2333050cee2SBarry Smith } 2340700a824SBarry Smith PetscValidHeaderSpecific(viewer,PETSC_VIEWER_CLASSID,2); 2355a5d4f66SBarry Smith 236ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mapping),&rank);CHKERRQ(ierr); 237251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 23832077d6dSBarry Smith if (iascii) { 23998c3331eSBarry Smith ierr = PetscObjectPrintClassNamePrefixType((PetscObject)mapping,viewer);CHKERRQ(ierr); 2401575c14dSBarry Smith ierr = PetscViewerASCIIPushSynchronized(viewer);CHKERRQ(ierr); 2415a5d4f66SBarry Smith for (i=0; i<mapping->n; i++) { 2427904a332SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] %D %D\n",rank,i,mapping->indices[i]);CHKERRQ(ierr); 2436831982aSBarry Smith } 244b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 2451575c14dSBarry Smith ierr = PetscViewerASCIIPopSynchronized(viewer);CHKERRQ(ierr); 2461575c14dSBarry Smith } 2475a5d4f66SBarry Smith PetscFunctionReturn(0); 2485a5d4f66SBarry Smith } 2495a5d4f66SBarry Smith 2501f428162SBarry Smith /*@ 2512bdab257SBarry Smith ISLocalToGlobalMappingCreateIS - Creates a mapping between a local (0 to n) 2522bdab257SBarry Smith ordering and a global parallel ordering. 2532bdab257SBarry Smith 2540f5bd95cSBarry Smith Not collective 255b9cd556bSLois Curfman McInnes 256a997ad1aSLois Curfman McInnes Input Parameter: 2578c03b21aSDmitry Karpeev . is - index set containing the global numbers for each local number 2582bdab257SBarry Smith 259a997ad1aSLois Curfman McInnes Output Parameter: 2602bdab257SBarry Smith . mapping - new mapping data structure 2612bdab257SBarry Smith 262f0413b6fSBarry Smith Notes: the block size of the IS determines the block size of the mapping 263a997ad1aSLois Curfman McInnes Level: advanced 264a997ad1aSLois Curfman McInnes 265273d9f13SBarry Smith Concepts: mapping^local to global 2662bdab257SBarry Smith 2677e99dc12SLawrence Mitchell .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreate(), ISLocalToGlobalMappingSetFromOptions() 2682bdab257SBarry Smith @*/ 2697087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingCreateIS(IS is,ISLocalToGlobalMapping *mapping) 2702bdab257SBarry Smith { 2716849ba73SBarry Smith PetscErrorCode ierr; 2723bbf0e92SBarry Smith PetscInt n,bs; 2735d0c19d7SBarry Smith const PetscInt *indices; 2742bdab257SBarry Smith MPI_Comm comm; 2753bbf0e92SBarry Smith PetscBool isblock; 2763a40ed3dSBarry Smith 2773a40ed3dSBarry Smith PetscFunctionBegin; 2780700a824SBarry Smith PetscValidHeaderSpecific(is,IS_CLASSID,1); 2794482741eSBarry Smith PetscValidPointer(mapping,2); 2802bdab257SBarry Smith 2812bdab257SBarry Smith ierr = PetscObjectGetComm((PetscObject)is,&comm);CHKERRQ(ierr); 2823b9aefa3SBarry Smith ierr = ISGetLocalSize(is,&n);CHKERRQ(ierr); 2833bbf0e92SBarry Smith ierr = PetscObjectTypeCompare((PetscObject)is,ISBLOCK,&isblock);CHKERRQ(ierr); 2846006e8d2SBarry Smith if (!isblock) { 285f0413b6fSBarry Smith ierr = ISGetIndices(is,&indices);CHKERRQ(ierr); 286f0413b6fSBarry Smith ierr = ISLocalToGlobalMappingCreate(comm,1,n,indices,PETSC_COPY_VALUES,mapping);CHKERRQ(ierr); 2872bdab257SBarry Smith ierr = ISRestoreIndices(is,&indices);CHKERRQ(ierr); 2886006e8d2SBarry Smith } else { 2896006e8d2SBarry Smith ierr = ISGetBlockSize(is,&bs);CHKERRQ(ierr); 290f0413b6fSBarry Smith ierr = ISBlockGetIndices(is,&indices);CHKERRQ(ierr); 29128bc9809SBarry Smith ierr = ISLocalToGlobalMappingCreate(comm,bs,n/bs,indices,PETSC_COPY_VALUES,mapping);CHKERRQ(ierr); 292f0413b6fSBarry Smith ierr = ISBlockRestoreIndices(is,&indices);CHKERRQ(ierr); 2936006e8d2SBarry Smith } 2943a40ed3dSBarry Smith PetscFunctionReturn(0); 2952bdab257SBarry Smith } 2965a5d4f66SBarry Smith 297a4d96a55SJed Brown /*@C 298a4d96a55SJed Brown ISLocalToGlobalMappingCreateSF - Creates a mapping between a local (0 to n) 299a4d96a55SJed Brown ordering and a global parallel ordering. 300a4d96a55SJed Brown 301a4d96a55SJed Brown Collective 302a4d96a55SJed Brown 303a4d96a55SJed Brown Input Parameter: 304a4d96a55SJed Brown + sf - star forest mapping contiguous local indices to (rank, offset) 305a4d96a55SJed Brown - start - first global index on this process 306a4d96a55SJed Brown 307a4d96a55SJed Brown Output Parameter: 308a4d96a55SJed Brown . mapping - new mapping data structure 309a4d96a55SJed Brown 310a4d96a55SJed Brown Level: advanced 311a4d96a55SJed Brown 312a4d96a55SJed Brown Concepts: mapping^local to global 313a4d96a55SJed Brown 3147e99dc12SLawrence Mitchell .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreate(), ISLocalToGlobalMappingCreateIS(), ISLocalToGlobalMappingSetFromOptions() 315a4d96a55SJed Brown @*/ 316a4d96a55SJed Brown PetscErrorCode ISLocalToGlobalMappingCreateSF(PetscSF sf,PetscInt start,ISLocalToGlobalMapping *mapping) 317a4d96a55SJed Brown { 318a4d96a55SJed Brown PetscErrorCode ierr; 319a4d96a55SJed Brown PetscInt i,maxlocal,nroots,nleaves,*globals,*ltog; 320a4d96a55SJed Brown const PetscInt *ilocal; 321a4d96a55SJed Brown MPI_Comm comm; 322a4d96a55SJed Brown 323a4d96a55SJed Brown PetscFunctionBegin; 324a4d96a55SJed Brown PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 325a4d96a55SJed Brown PetscValidPointer(mapping,3); 326a4d96a55SJed Brown 327a4d96a55SJed Brown ierr = PetscObjectGetComm((PetscObject)sf,&comm);CHKERRQ(ierr); 3280298fd71SBarry Smith ierr = PetscSFGetGraph(sf,&nroots,&nleaves,&ilocal,NULL);CHKERRQ(ierr); 329f6e5521dSKarl Rupp if (ilocal) { 330f6e5521dSKarl Rupp for (i=0,maxlocal=0; i<nleaves; i++) maxlocal = PetscMax(maxlocal,ilocal[i]+1); 331f6e5521dSKarl Rupp } 332a4d96a55SJed Brown else maxlocal = nleaves; 333785e854fSJed Brown ierr = PetscMalloc1(nroots,&globals);CHKERRQ(ierr); 334785e854fSJed Brown ierr = PetscMalloc1(maxlocal,<og);CHKERRQ(ierr); 335a4d96a55SJed Brown for (i=0; i<nroots; i++) globals[i] = start + i; 336a4d96a55SJed Brown for (i=0; i<maxlocal; i++) ltog[i] = -1; 337a4d96a55SJed Brown ierr = PetscSFBcastBegin(sf,MPIU_INT,globals,ltog);CHKERRQ(ierr); 338a4d96a55SJed Brown ierr = PetscSFBcastEnd(sf,MPIU_INT,globals,ltog);CHKERRQ(ierr); 339f0413b6fSBarry Smith ierr = ISLocalToGlobalMappingCreate(comm,1,maxlocal,ltog,PETSC_OWN_POINTER,mapping);CHKERRQ(ierr); 340a4d96a55SJed Brown ierr = PetscFree(globals);CHKERRQ(ierr); 341a4d96a55SJed Brown PetscFunctionReturn(0); 342a4d96a55SJed Brown } 343b46b645bSBarry Smith 34463fa5c83Sstefano_zampini /*@ 34563fa5c83Sstefano_zampini ISLocalToGlobalMappingSetBlockSize - Sets the blocksize of the mapping 34663fa5c83Sstefano_zampini 34763fa5c83Sstefano_zampini Not collective 34863fa5c83Sstefano_zampini 34963fa5c83Sstefano_zampini Input Parameters: 35063fa5c83Sstefano_zampini . mapping - mapping data structure 35163fa5c83Sstefano_zampini . bs - the blocksize 35263fa5c83Sstefano_zampini 35363fa5c83Sstefano_zampini Level: advanced 35463fa5c83Sstefano_zampini 35563fa5c83Sstefano_zampini Concepts: mapping^local to global 35663fa5c83Sstefano_zampini 35763fa5c83Sstefano_zampini .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreateIS() 35863fa5c83Sstefano_zampini @*/ 35963fa5c83Sstefano_zampini PetscErrorCode ISLocalToGlobalMappingSetBlockSize(ISLocalToGlobalMapping mapping,PetscInt bs) 36063fa5c83Sstefano_zampini { 361a59f3c4dSstefano_zampini PetscInt *nid; 362a59f3c4dSstefano_zampini const PetscInt *oid; 363a59f3c4dSstefano_zampini PetscInt i,cn,on,obs,nn; 36463fa5c83Sstefano_zampini PetscErrorCode ierr; 36563fa5c83Sstefano_zampini 36663fa5c83Sstefano_zampini PetscFunctionBegin; 36763fa5c83Sstefano_zampini PetscValidHeaderSpecific(mapping,IS_LTOGM_CLASSID,1); 36863fa5c83Sstefano_zampini if (bs < 1) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Invalid block size %D",bs); 36963fa5c83Sstefano_zampini if (bs == mapping->bs) PetscFunctionReturn(0); 37063fa5c83Sstefano_zampini on = mapping->n; 37163fa5c83Sstefano_zampini obs = mapping->bs; 37263fa5c83Sstefano_zampini oid = mapping->indices; 37363fa5c83Sstefano_zampini nn = (on*obs)/bs; 37463fa5c83Sstefano_zampini if ((on*obs)%bs) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Block size %D is inconsistent with block size %D and number of block indices %D",bs,obs,on); 375a59f3c4dSstefano_zampini 37663fa5c83Sstefano_zampini ierr = PetscMalloc1(nn,&nid);CHKERRQ(ierr); 377a59f3c4dSstefano_zampini ierr = ISLocalToGlobalMappingGetIndices(mapping,&oid);CHKERRQ(ierr); 378a59f3c4dSstefano_zampini for (i=0;i<nn;i++) { 379a59f3c4dSstefano_zampini PetscInt j; 380a59f3c4dSstefano_zampini for (j=0,cn=0;j<bs-1;j++) { 381a59f3c4dSstefano_zampini if (oid[i*bs+j] < 0) { cn++; continue; } 382a59f3c4dSstefano_zampini if (oid[i*bs+j] != oid[i*bs+j+1]-1) SETERRQ4(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Block sizes %D and %D are incompatible with the block indices: non consecutive indices %D %D",bs,obs,oid[i*bs+j],oid[i*bs+j+1]); 383a59f3c4dSstefano_zampini } 384a59f3c4dSstefano_zampini if (oid[i*bs+j] < 0) cn++; 3858b7cb0e6Sstefano_zampini if (cn) { 386a59f3c4dSstefano_zampini if (cn != bs) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Block sizes %D and %D are incompatible with the block indices: invalid number of negative entries in block %D",bs,obs,cn); 387a59f3c4dSstefano_zampini nid[i] = -1; 3888b7cb0e6Sstefano_zampini } else { 389a59f3c4dSstefano_zampini nid[i] = oid[i*bs]/bs; 39063fa5c83Sstefano_zampini } 39163fa5c83Sstefano_zampini } 392a59f3c4dSstefano_zampini ierr = ISLocalToGlobalMappingRestoreIndices(mapping,&oid);CHKERRQ(ierr); 393a59f3c4dSstefano_zampini 39463fa5c83Sstefano_zampini mapping->n = nn; 39563fa5c83Sstefano_zampini mapping->bs = bs; 39663fa5c83Sstefano_zampini ierr = PetscFree(mapping->indices);CHKERRQ(ierr); 39763fa5c83Sstefano_zampini mapping->indices = nid; 398c9345713Sstefano_zampini mapping->globalstart = 0; 399c9345713Sstefano_zampini mapping->globalend = 0; 400413f72f0SBarry Smith if (mapping->ops->destroy) { 401413f72f0SBarry Smith ierr = (*mapping->ops->destroy)(mapping);CHKERRQ(ierr); 402413f72f0SBarry Smith } 40363fa5c83Sstefano_zampini PetscFunctionReturn(0); 40463fa5c83Sstefano_zampini } 40563fa5c83Sstefano_zampini 40645b6f7e9SBarry Smith /*@ 40745b6f7e9SBarry Smith ISLocalToGlobalMappingGetBlockSize - Gets the blocksize of the mapping 40845b6f7e9SBarry Smith ordering and a global parallel ordering. 40945b6f7e9SBarry Smith 41045b6f7e9SBarry Smith Not Collective 41145b6f7e9SBarry Smith 41245b6f7e9SBarry Smith Input Parameters: 41345b6f7e9SBarry Smith . mapping - mapping data structure 41445b6f7e9SBarry Smith 41545b6f7e9SBarry Smith Output Parameter: 41645b6f7e9SBarry Smith . bs - the blocksize 41745b6f7e9SBarry Smith 41845b6f7e9SBarry Smith Level: advanced 41945b6f7e9SBarry Smith 42045b6f7e9SBarry Smith Concepts: mapping^local to global 42145b6f7e9SBarry Smith 42245b6f7e9SBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreateIS() 42345b6f7e9SBarry Smith @*/ 42445b6f7e9SBarry Smith PetscErrorCode ISLocalToGlobalMappingGetBlockSize(ISLocalToGlobalMapping mapping,PetscInt *bs) 42545b6f7e9SBarry Smith { 42645b6f7e9SBarry Smith PetscFunctionBegin; 427cbc1caf0SMatthew G. Knepley PetscValidHeaderSpecific(mapping,IS_LTOGM_CLASSID,1); 42845b6f7e9SBarry Smith *bs = mapping->bs; 42945b6f7e9SBarry Smith PetscFunctionReturn(0); 43045b6f7e9SBarry Smith } 43145b6f7e9SBarry Smith 432ba5bb76aSSatish Balay /*@ 43390f02eecSBarry Smith ISLocalToGlobalMappingCreate - Creates a mapping between a local (0 to n) 43490f02eecSBarry Smith ordering and a global parallel ordering. 4352362add9SBarry Smith 43689d82c54SBarry Smith Not Collective, but communicator may have more than one process 437b9cd556bSLois Curfman McInnes 4382362add9SBarry Smith Input Parameters: 43989d82c54SBarry Smith + comm - MPI communicator 440f0413b6fSBarry Smith . bs - the block size 44128bc9809SBarry Smith . n - the number of local elements divided by the block size, or equivalently the number of block indices 44228bc9809SBarry Smith . indices - the global index for each local element, these do not need to be in increasing order (sorted), these values should not be scaled (i.e. multiplied) by the blocksize bs 443d5ad8652SBarry Smith - mode - see PetscCopyMode 4442362add9SBarry Smith 445a997ad1aSLois Curfman McInnes Output Parameter: 44690f02eecSBarry Smith . mapping - new mapping data structure 4472362add9SBarry Smith 448f0413b6fSBarry Smith Notes: There is one integer value in indices per block and it represents the actual indices bs*idx + j, where j=0,..,bs-1 449413f72f0SBarry Smith 4509a7b7924SJed Brown For "small" problems when using ISGlobalToLocalMappingApply() and ISGlobalToLocalMappingApplyBlock(), the ISLocalToGlobalMappingType of ISLOCALTOGLOBALMAPPINGBASIC will be used; 451413f72f0SBarry Smith this uses more memory but is faster; this approach is not scalable for extremely large mappings. For large problems ISLOCALTOGLOBALMAPPINGHASH is used, this is scalable. 452413f72f0SBarry Smith Use ISLocalToGlobalMappingSetType() or call ISLocalToGlobalMappingSetFromOptions() with the option -islocaltoglobalmapping_type <basic,hash> to control which is used. 453413f72f0SBarry Smith 454a997ad1aSLois Curfman McInnes Level: advanced 455a997ad1aSLois Curfman McInnes 456273d9f13SBarry Smith Concepts: mapping^local to global 4572362add9SBarry Smith 458413f72f0SBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreateIS(), ISLocalToGlobalMappingSetFromOptions(), ISLOCALTOGLOBALMAPPINGBASIC, ISLOCALTOGLOBALMAPPINGHASH 459413f72f0SBarry Smith ISLocalToGlobalMappingSetType(), ISLocalToGlobalMappingType 4602362add9SBarry Smith @*/ 46160c7cefcSBarry Smith PetscErrorCode ISLocalToGlobalMappingCreate(MPI_Comm comm,PetscInt bs,PetscInt n,const PetscInt indices[],PetscCopyMode mode,ISLocalToGlobalMapping *mapping) 4622362add9SBarry Smith { 4636849ba73SBarry Smith PetscErrorCode ierr; 46432dcc486SBarry Smith PetscInt *in; 465b46b645bSBarry Smith 466b46b645bSBarry Smith PetscFunctionBegin; 46773911063SBarry Smith if (n) PetscValidIntPointer(indices,3); 4684482741eSBarry Smith PetscValidPointer(mapping,4); 469b46b645bSBarry Smith 4700298fd71SBarry Smith *mapping = NULL; 471607a6623SBarry Smith ierr = ISInitializePackage();CHKERRQ(ierr); 4722362add9SBarry Smith 47373107ff1SLisandro Dalcin ierr = PetscHeaderCreate(*mapping,IS_LTOGM_CLASSID,"ISLocalToGlobalMapping","Local to global mapping","IS", 47460c7cefcSBarry Smith comm,ISLocalToGlobalMappingDestroy,ISLocalToGlobalMappingView);CHKERRQ(ierr); 475d4bb536fSBarry Smith (*mapping)->n = n; 476f0413b6fSBarry Smith (*mapping)->bs = bs; 477268a049cSStefano Zampini (*mapping)->info_cached = PETSC_FALSE; 478268a049cSStefano Zampini (*mapping)->info_free = PETSC_FALSE; 479268a049cSStefano Zampini (*mapping)->info_procs = NULL; 480268a049cSStefano Zampini (*mapping)->info_numprocs = NULL; 481268a049cSStefano Zampini (*mapping)->info_indices = NULL; 482413f72f0SBarry Smith 483413f72f0SBarry Smith (*mapping)->ops->globaltolocalmappingapply = NULL; 484413f72f0SBarry Smith (*mapping)->ops->globaltolocalmappingapplyblock = NULL; 485413f72f0SBarry Smith (*mapping)->ops->destroy = NULL; 486d5ad8652SBarry Smith if (mode == PETSC_COPY_VALUES) { 487785e854fSJed Brown ierr = PetscMalloc1(n,&in);CHKERRQ(ierr); 488d5ad8652SBarry Smith ierr = PetscMemcpy(in,indices,n*sizeof(PetscInt));CHKERRQ(ierr); 489d5ad8652SBarry Smith (*mapping)->indices = in; 4906389a1a1SBarry Smith ierr = PetscLogObjectMemory((PetscObject)*mapping,n*sizeof(PetscInt));CHKERRQ(ierr); 4916389a1a1SBarry Smith } else if (mode == PETSC_OWN_POINTER) { 4926389a1a1SBarry Smith (*mapping)->indices = (PetscInt*)indices; 4936389a1a1SBarry Smith ierr = PetscLogObjectMemory((PetscObject)*mapping,n*sizeof(PetscInt));CHKERRQ(ierr); 4946389a1a1SBarry Smith } 49560c7cefcSBarry Smith else SETERRQ(comm,PETSC_ERR_SUP,"Cannot currently use PETSC_USE_POINTER"); 4963a40ed3dSBarry Smith PetscFunctionReturn(0); 4972362add9SBarry Smith } 4982362add9SBarry Smith 499413f72f0SBarry Smith PetscFunctionList ISLocalToGlobalMappingList = NULL; 500413f72f0SBarry Smith 501413f72f0SBarry Smith 50290f02eecSBarry Smith /*@ 5037e99dc12SLawrence Mitchell ISLocalToGlobalMappingSetFromOptions - Set mapping options from the options database. 5047e99dc12SLawrence Mitchell 5057e99dc12SLawrence Mitchell Not collective 5067e99dc12SLawrence Mitchell 5077e99dc12SLawrence Mitchell Input Parameters: 5087e99dc12SLawrence Mitchell . mapping - mapping data structure 5097e99dc12SLawrence Mitchell 5107e99dc12SLawrence Mitchell Level: advanced 5117e99dc12SLawrence Mitchell 5127e99dc12SLawrence Mitchell @*/ 5137e99dc12SLawrence Mitchell PetscErrorCode ISLocalToGlobalMappingSetFromOptions(ISLocalToGlobalMapping mapping) 5147e99dc12SLawrence Mitchell { 5157e99dc12SLawrence Mitchell PetscErrorCode ierr; 516413f72f0SBarry Smith char type[256]; 517413f72f0SBarry Smith ISLocalToGlobalMappingType defaulttype = "Not set"; 5187e99dc12SLawrence Mitchell PetscBool flg; 5197e99dc12SLawrence Mitchell 5207e99dc12SLawrence Mitchell PetscFunctionBegin; 5217e99dc12SLawrence Mitchell PetscValidHeaderSpecific(mapping,IS_LTOGM_CLASSID,1); 522413f72f0SBarry Smith ierr = ISLocalToGlobalMappingRegisterAll();CHKERRQ(ierr); 5237e99dc12SLawrence Mitchell ierr = PetscObjectOptionsBegin((PetscObject)mapping);CHKERRQ(ierr); 524413f72f0SBarry Smith ierr = PetscOptionsFList("-islocaltoglobalmapping_type","ISLocalToGlobalMapping method","ISLocalToGlobalMappingSetType",ISLocalToGlobalMappingList,(char*)(((PetscObject)mapping)->type_name) ? ((PetscObject)mapping)->type_name : defaulttype,type,256,&flg);CHKERRQ(ierr); 525413f72f0SBarry Smith if (flg) { 526413f72f0SBarry Smith ierr = ISLocalToGlobalMappingSetType(mapping,type);CHKERRQ(ierr); 527413f72f0SBarry Smith } 5287e99dc12SLawrence Mitchell ierr = PetscOptionsEnd();CHKERRQ(ierr); 5297e99dc12SLawrence Mitchell PetscFunctionReturn(0); 5307e99dc12SLawrence Mitchell } 5317e99dc12SLawrence Mitchell 5327e99dc12SLawrence Mitchell /*@ 53390f02eecSBarry Smith ISLocalToGlobalMappingDestroy - Destroys a mapping between a local (0 to n) 53490f02eecSBarry Smith ordering and a global parallel ordering. 53590f02eecSBarry Smith 5360f5bd95cSBarry Smith Note Collective 537b9cd556bSLois Curfman McInnes 53890f02eecSBarry Smith Input Parameters: 53990f02eecSBarry Smith . mapping - mapping data structure 54090f02eecSBarry Smith 541a997ad1aSLois Curfman McInnes Level: advanced 542a997ad1aSLois Curfman McInnes 5433acfe500SLois Curfman McInnes .seealso: ISLocalToGlobalMappingCreate() 54490f02eecSBarry Smith @*/ 5456bf464f9SBarry Smith PetscErrorCode ISLocalToGlobalMappingDestroy(ISLocalToGlobalMapping *mapping) 54690f02eecSBarry Smith { 547dfbe8321SBarry Smith PetscErrorCode ierr; 5485fd66863SKarl Rupp 5493a40ed3dSBarry Smith PetscFunctionBegin; 5506bf464f9SBarry Smith if (!*mapping) PetscFunctionReturn(0); 5516bf464f9SBarry Smith PetscValidHeaderSpecific((*mapping),IS_LTOGM_CLASSID,1); 552997056adSBarry Smith if (--((PetscObject)(*mapping))->refct > 0) {*mapping = 0;PetscFunctionReturn(0);} 5536bf464f9SBarry Smith ierr = PetscFree((*mapping)->indices);CHKERRQ(ierr); 554268a049cSStefano Zampini ierr = PetscFree((*mapping)->info_procs);CHKERRQ(ierr); 555268a049cSStefano Zampini ierr = PetscFree((*mapping)->info_numprocs);CHKERRQ(ierr); 556268a049cSStefano Zampini if ((*mapping)->info_indices) { 557268a049cSStefano Zampini PetscInt i; 558268a049cSStefano Zampini 559268a049cSStefano Zampini ierr = PetscFree(((*mapping)->info_indices)[0]);CHKERRQ(ierr); 560268a049cSStefano Zampini for (i=1; i<(*mapping)->info_nproc; i++) { 561268a049cSStefano Zampini ierr = PetscFree(((*mapping)->info_indices)[i]);CHKERRQ(ierr); 562268a049cSStefano Zampini } 563268a049cSStefano Zampini ierr = PetscFree((*mapping)->info_indices);CHKERRQ(ierr); 564268a049cSStefano Zampini } 565413f72f0SBarry Smith if ((*mapping)->ops->destroy) { 566413f72f0SBarry Smith ierr = (*(*mapping)->ops->destroy)(*mapping);CHKERRQ(ierr); 567413f72f0SBarry Smith } 568d38fa0fbSBarry Smith ierr = PetscHeaderDestroy(mapping);CHKERRQ(ierr); 569992144d0SBarry Smith *mapping = 0; 5703a40ed3dSBarry Smith PetscFunctionReturn(0); 57190f02eecSBarry Smith } 57290f02eecSBarry Smith 57390f02eecSBarry Smith /*@ 5743acfe500SLois Curfman McInnes ISLocalToGlobalMappingApplyIS - Creates from an IS in the local numbering 5753acfe500SLois Curfman McInnes a new index set using the global numbering defined in an ISLocalToGlobalMapping 5763acfe500SLois Curfman McInnes context. 57790f02eecSBarry Smith 578b9cd556bSLois Curfman McInnes Not collective 579b9cd556bSLois Curfman McInnes 58090f02eecSBarry Smith Input Parameters: 581b9cd556bSLois Curfman McInnes + mapping - mapping between local and global numbering 582b9cd556bSLois Curfman McInnes - is - index set in local numbering 58390f02eecSBarry Smith 58490f02eecSBarry Smith Output Parameters: 58590f02eecSBarry Smith . newis - index set in global numbering 58690f02eecSBarry Smith 587a997ad1aSLois Curfman McInnes Level: advanced 588a997ad1aSLois Curfman McInnes 589273d9f13SBarry Smith Concepts: mapping^local to global 5903acfe500SLois Curfman McInnes 59190f02eecSBarry Smith .seealso: ISLocalToGlobalMappingApply(), ISLocalToGlobalMappingCreate(), 592d4bb536fSBarry Smith ISLocalToGlobalMappingDestroy(), ISGlobalToLocalMappingApply() 59390f02eecSBarry Smith @*/ 5947087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingApplyIS(ISLocalToGlobalMapping mapping,IS is,IS *newis) 59590f02eecSBarry Smith { 5966849ba73SBarry Smith PetscErrorCode ierr; 597e24637baSBarry Smith PetscInt n,*idxout; 5985d0c19d7SBarry Smith const PetscInt *idxin; 5993a40ed3dSBarry Smith 6003a40ed3dSBarry Smith PetscFunctionBegin; 6010700a824SBarry Smith PetscValidHeaderSpecific(mapping,IS_LTOGM_CLASSID,1); 6020700a824SBarry Smith PetscValidHeaderSpecific(is,IS_CLASSID,2); 6034482741eSBarry Smith PetscValidPointer(newis,3); 60490f02eecSBarry Smith 6053b9aefa3SBarry Smith ierr = ISGetLocalSize(is,&n);CHKERRQ(ierr); 60690f02eecSBarry Smith ierr = ISGetIndices(is,&idxin);CHKERRQ(ierr); 607785e854fSJed Brown ierr = PetscMalloc1(n,&idxout);CHKERRQ(ierr); 608e24637baSBarry Smith ierr = ISLocalToGlobalMappingApply(mapping,n,idxin,idxout);CHKERRQ(ierr); 6093b9aefa3SBarry Smith ierr = ISRestoreIndices(is,&idxin);CHKERRQ(ierr); 610543f3098SMatthew G. Knepley ierr = ISCreateGeneral(PetscObjectComm((PetscObject)is),n,idxout,PETSC_OWN_POINTER,newis);CHKERRQ(ierr); 6113a40ed3dSBarry Smith PetscFunctionReturn(0); 61290f02eecSBarry Smith } 61390f02eecSBarry Smith 614b89cb25eSSatish Balay /*@ 6153acfe500SLois Curfman McInnes ISLocalToGlobalMappingApply - Takes a list of integers in a local numbering 6163acfe500SLois Curfman McInnes and converts them to the global numbering. 61790f02eecSBarry Smith 618b9cd556bSLois Curfman McInnes Not collective 619b9cd556bSLois Curfman McInnes 620bb25748dSBarry Smith Input Parameters: 621b9cd556bSLois Curfman McInnes + mapping - the local to global mapping context 622bb25748dSBarry Smith . N - number of integers 623b9cd556bSLois Curfman McInnes - in - input indices in local numbering 624bb25748dSBarry Smith 625bb25748dSBarry Smith Output Parameter: 626bb25748dSBarry Smith . out - indices in global numbering 627bb25748dSBarry Smith 628b9cd556bSLois Curfman McInnes Notes: 629b9cd556bSLois Curfman McInnes The in and out array parameters may be identical. 630d4bb536fSBarry Smith 631a997ad1aSLois Curfman McInnes Level: advanced 632a997ad1aSLois Curfman McInnes 63345b6f7e9SBarry Smith .seealso: ISLocalToGlobalMappingApplyBlock(), ISLocalToGlobalMappingCreate(),ISLocalToGlobalMappingDestroy(), 6340752156aSBarry Smith ISLocalToGlobalMappingApplyIS(),AOCreateBasic(),AOApplicationToPetsc(), 635d4bb536fSBarry Smith AOPetscToApplication(), ISGlobalToLocalMappingApply() 636bb25748dSBarry Smith 637273d9f13SBarry Smith Concepts: mapping^local to global 638afcb2eb5SJed Brown @*/ 639afcb2eb5SJed Brown PetscErrorCode ISLocalToGlobalMappingApply(ISLocalToGlobalMapping mapping,PetscInt N,const PetscInt in[],PetscInt out[]) 640afcb2eb5SJed Brown { 641cbc1caf0SMatthew G. Knepley PetscInt i,bs,Nmax; 64245b6f7e9SBarry Smith 64345b6f7e9SBarry Smith PetscFunctionBegin; 644cbc1caf0SMatthew G. Knepley PetscValidHeaderSpecific(mapping,IS_LTOGM_CLASSID,1); 645cbc1caf0SMatthew G. Knepley bs = mapping->bs; 646cbc1caf0SMatthew G. Knepley Nmax = bs*mapping->n; 64745b6f7e9SBarry Smith if (bs == 1) { 648cbc1caf0SMatthew G. Knepley const PetscInt *idx = mapping->indices; 64945b6f7e9SBarry Smith for (i=0; i<N; i++) { 65045b6f7e9SBarry Smith if (in[i] < 0) { 65145b6f7e9SBarry Smith out[i] = in[i]; 65245b6f7e9SBarry Smith continue; 65345b6f7e9SBarry Smith } 654e24637baSBarry Smith if (in[i] >= Nmax) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local index %D too large %D (max) at %D",in[i],Nmax-1,i); 65545b6f7e9SBarry Smith out[i] = idx[in[i]]; 65645b6f7e9SBarry Smith } 65745b6f7e9SBarry Smith } else { 658cbc1caf0SMatthew G. Knepley const PetscInt *idx = mapping->indices; 65945b6f7e9SBarry Smith for (i=0; i<N; i++) { 66045b6f7e9SBarry Smith if (in[i] < 0) { 66145b6f7e9SBarry Smith out[i] = in[i]; 66245b6f7e9SBarry Smith continue; 66345b6f7e9SBarry Smith } 664e24637baSBarry Smith if (in[i] >= Nmax) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local index %D too large %D (max) at %D",in[i],Nmax-1,i); 66545b6f7e9SBarry Smith out[i] = idx[in[i]/bs]*bs + (in[i] % bs); 66645b6f7e9SBarry Smith } 66745b6f7e9SBarry Smith } 66845b6f7e9SBarry Smith PetscFunctionReturn(0); 66945b6f7e9SBarry Smith } 67045b6f7e9SBarry Smith 67145b6f7e9SBarry Smith /*@ 6726006e8d2SBarry Smith ISLocalToGlobalMappingApplyBlock - Takes a list of integers in a local block numbering and converts them to the global block numbering 67345b6f7e9SBarry Smith 67445b6f7e9SBarry Smith Not collective 67545b6f7e9SBarry Smith 67645b6f7e9SBarry Smith Input Parameters: 67745b6f7e9SBarry Smith + mapping - the local to global mapping context 67845b6f7e9SBarry Smith . N - number of integers 6796006e8d2SBarry Smith - in - input indices in local block numbering 68045b6f7e9SBarry Smith 68145b6f7e9SBarry Smith Output Parameter: 6826006e8d2SBarry Smith . out - indices in global block numbering 68345b6f7e9SBarry Smith 68445b6f7e9SBarry Smith Notes: 68545b6f7e9SBarry Smith The in and out array parameters may be identical. 68645b6f7e9SBarry Smith 6876006e8d2SBarry Smith Example: 6886006e8d2SBarry Smith If the index values are {0,1,6,7} set with a call to ISLocalToGlobalMappingCreate(PETSC_COMM_SELF,2,2,{0,3}) then the mapping applied to 0 6896006e8d2SBarry Smith (the first block) would produce 0 and the mapping applied to 1 (the second block) would produce 3. 6906006e8d2SBarry Smith 69145b6f7e9SBarry Smith Level: advanced 69245b6f7e9SBarry Smith 69345b6f7e9SBarry Smith .seealso: ISLocalToGlobalMappingApply(), ISLocalToGlobalMappingCreate(),ISLocalToGlobalMappingDestroy(), 69445b6f7e9SBarry Smith ISLocalToGlobalMappingApplyIS(),AOCreateBasic(),AOApplicationToPetsc(), 69545b6f7e9SBarry Smith AOPetscToApplication(), ISGlobalToLocalMappingApply() 69645b6f7e9SBarry Smith 69745b6f7e9SBarry Smith Concepts: mapping^local to global 69845b6f7e9SBarry Smith @*/ 69945b6f7e9SBarry Smith PetscErrorCode ISLocalToGlobalMappingApplyBlock(ISLocalToGlobalMapping mapping,PetscInt N,const PetscInt in[],PetscInt out[]) 70045b6f7e9SBarry Smith { 701cbc1caf0SMatthew G. Knepley 702cbc1caf0SMatthew G. Knepley PetscFunctionBegin; 703cbc1caf0SMatthew G. Knepley PetscValidHeaderSpecific(mapping,IS_LTOGM_CLASSID,1); 704cbc1caf0SMatthew G. Knepley { 705afcb2eb5SJed Brown PetscInt i,Nmax = mapping->n; 706afcb2eb5SJed Brown const PetscInt *idx = mapping->indices; 707d4bb536fSBarry Smith 708afcb2eb5SJed Brown for (i=0; i<N; i++) { 709afcb2eb5SJed Brown if (in[i] < 0) { 710afcb2eb5SJed Brown out[i] = in[i]; 711afcb2eb5SJed Brown continue; 712afcb2eb5SJed Brown } 713e24637baSBarry Smith if (in[i] >= Nmax) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local block index %D too large %D (max) at %D",in[i],Nmax-1,i); 714afcb2eb5SJed Brown out[i] = idx[in[i]]; 715afcb2eb5SJed Brown } 716cbc1caf0SMatthew G. Knepley } 717afcb2eb5SJed Brown PetscFunctionReturn(0); 718afcb2eb5SJed Brown } 719d4bb536fSBarry Smith 7207e99dc12SLawrence Mitchell /*@ 721a997ad1aSLois Curfman McInnes ISGlobalToLocalMappingApply - Provides the local numbering for a list of integers 722a997ad1aSLois Curfman McInnes specified with a global numbering. 723d4bb536fSBarry Smith 724b9cd556bSLois Curfman McInnes Not collective 725b9cd556bSLois Curfman McInnes 726d4bb536fSBarry Smith Input Parameters: 727b9cd556bSLois Curfman McInnes + mapping - mapping between local and global numbering 728d4bb536fSBarry Smith . type - IS_GTOLM_MASK - replaces global indices with no local value with -1 729d4bb536fSBarry Smith IS_GTOLM_DROP - drops the indices with no local value from the output list 730d4bb536fSBarry Smith . n - number of global indices to map 731b9cd556bSLois Curfman McInnes - idx - global indices to map 732d4bb536fSBarry Smith 733d4bb536fSBarry Smith Output Parameters: 734b9cd556bSLois Curfman McInnes + nout - number of indices in output array (if type == IS_GTOLM_MASK then nout = n) 735b9cd556bSLois Curfman McInnes - idxout - local index of each global index, one must pass in an array long enough 736e182c471SBarry Smith to hold all the indices. You can call ISGlobalToLocalMappingApply() with 7370298fd71SBarry Smith idxout == NULL to determine the required length (returned in nout) 738e182c471SBarry Smith and then allocate the required space and call ISGlobalToLocalMappingApply() 739e182c471SBarry Smith a second time to set the values. 740d4bb536fSBarry Smith 741b9cd556bSLois Curfman McInnes Notes: 7420298fd71SBarry Smith Either nout or idxout may be NULL. idx and idxout may be identical. 743d4bb536fSBarry Smith 7449a7b7924SJed Brown For "small" problems when using ISGlobalToLocalMappingApply() and ISGlobalToLocalMappingApplyBlock(), the ISLocalToGlobalMappingType of ISLOCALTOGLOBALMAPPINGBASIC will be used; 745413f72f0SBarry Smith this uses more memory but is faster; this approach is not scalable for extremely large mappings. For large problems ISLOCALTOGLOBALMAPPINGHASH is used, this is scalable. 746413f72f0SBarry Smith Use ISLocalToGlobalMappingSetType() or call ISLocalToGlobalMappingSetFromOptions() with the option -islocaltoglobalmapping_type <basic,hash> to control which is used. 7470f5bd95cSBarry Smith 748a997ad1aSLois Curfman McInnes Level: advanced 749a997ad1aSLois Curfman McInnes 75032fd6b96SBarry Smith Developer Note: The manual page states that idx and idxout may be identical but the calling 75132fd6b96SBarry Smith sequence declares idx as const so it cannot be the same as idxout. 75232fd6b96SBarry Smith 753273d9f13SBarry Smith Concepts: mapping^global to local 754d4bb536fSBarry Smith 7559d90f715SBarry Smith .seealso: ISLocalToGlobalMappingApply(), ISGlobalToLocalMappingApplyBlock(), ISLocalToGlobalMappingCreate(), 756413f72f0SBarry Smith ISLocalToGlobalMappingDestroy() 757d4bb536fSBarry Smith @*/ 758413f72f0SBarry Smith PetscErrorCode ISGlobalToLocalMappingApply(ISLocalToGlobalMapping mapping,ISGlobalToLocalMappingMode type,PetscInt n,const PetscInt idx[],PetscInt *nout,PetscInt idxout[]) 759d4bb536fSBarry Smith { 7609d90f715SBarry Smith PetscErrorCode ierr; 7619d90f715SBarry Smith 7629d90f715SBarry Smith PetscFunctionBegin; 7639d90f715SBarry Smith PetscValidHeaderSpecific(mapping,IS_LTOGM_CLASSID,1); 764413f72f0SBarry Smith if (!mapping->data) { 765413f72f0SBarry Smith ierr = ISGlobalToLocalMappingSetUp(mapping);CHKERRQ(ierr); 7669d90f715SBarry Smith } 767413f72f0SBarry Smith ierr = (*mapping->ops->globaltolocalmappingapply)(mapping,type,n,idx,nout,idxout);CHKERRQ(ierr); 7689d90f715SBarry Smith PetscFunctionReturn(0); 7699d90f715SBarry Smith } 7709d90f715SBarry Smith 771d4fe737eSStefano Zampini /*@ 772d4fe737eSStefano Zampini ISGlobalToLocalMappingApplyIS - Creates from an IS in the global numbering 773d4fe737eSStefano Zampini a new index set using the local numbering defined in an ISLocalToGlobalMapping 774d4fe737eSStefano Zampini context. 775d4fe737eSStefano Zampini 776d4fe737eSStefano Zampini Not collective 777d4fe737eSStefano Zampini 778d4fe737eSStefano Zampini Input Parameters: 779d4fe737eSStefano Zampini + mapping - mapping between local and global numbering 780*2785b321SStefano Zampini . type - IS_GTOLM_MASK - replaces global indices with no local value with -1 781*2785b321SStefano Zampini IS_GTOLM_DROP - drops the indices with no local value from the output list 782d4fe737eSStefano Zampini - is - index set in global numbering 783d4fe737eSStefano Zampini 784d4fe737eSStefano Zampini Output Parameters: 785d4fe737eSStefano Zampini . newis - index set in local numbering 786d4fe737eSStefano Zampini 787d4fe737eSStefano Zampini Level: advanced 788d4fe737eSStefano Zampini 789d4fe737eSStefano Zampini Concepts: mapping^local to global 790d4fe737eSStefano Zampini 791d4fe737eSStefano Zampini .seealso: ISGlobalToLocalMappingApply(), ISLocalToGlobalMappingCreate(), 792d4fe737eSStefano Zampini ISLocalToGlobalMappingDestroy() 793d4fe737eSStefano Zampini @*/ 794413f72f0SBarry Smith PetscErrorCode ISGlobalToLocalMappingApplyIS(ISLocalToGlobalMapping mapping,ISGlobalToLocalMappingMode type,IS is,IS *newis) 795d4fe737eSStefano Zampini { 796d4fe737eSStefano Zampini PetscErrorCode ierr; 797d4fe737eSStefano Zampini PetscInt n,nout,*idxout; 798d4fe737eSStefano Zampini const PetscInt *idxin; 799d4fe737eSStefano Zampini 800d4fe737eSStefano Zampini PetscFunctionBegin; 801d4fe737eSStefano Zampini PetscValidHeaderSpecific(mapping,IS_LTOGM_CLASSID,1); 802d4fe737eSStefano Zampini PetscValidHeaderSpecific(is,IS_CLASSID,3); 803d4fe737eSStefano Zampini PetscValidPointer(newis,4); 804d4fe737eSStefano Zampini 805d4fe737eSStefano Zampini ierr = ISGetLocalSize(is,&n);CHKERRQ(ierr); 806d4fe737eSStefano Zampini ierr = ISGetIndices(is,&idxin);CHKERRQ(ierr); 807d4fe737eSStefano Zampini if (type == IS_GTOLM_MASK) { 808d4fe737eSStefano Zampini ierr = PetscMalloc1(n,&idxout);CHKERRQ(ierr); 809d4fe737eSStefano Zampini } else { 810d4fe737eSStefano Zampini ierr = ISGlobalToLocalMappingApply(mapping,type,n,idxin,&nout,NULL);CHKERRQ(ierr); 811d4fe737eSStefano Zampini ierr = PetscMalloc1(nout,&idxout);CHKERRQ(ierr); 812d4fe737eSStefano Zampini } 813d4fe737eSStefano Zampini ierr = ISGlobalToLocalMappingApply(mapping,type,n,idxin,&nout,idxout);CHKERRQ(ierr); 814d4fe737eSStefano Zampini ierr = ISRestoreIndices(is,&idxin);CHKERRQ(ierr); 815d4fe737eSStefano Zampini ierr = ISCreateGeneral(PetscObjectComm((PetscObject)is),nout,idxout,PETSC_OWN_POINTER,newis);CHKERRQ(ierr); 816d4fe737eSStefano Zampini PetscFunctionReturn(0); 817d4fe737eSStefano Zampini } 818d4fe737eSStefano Zampini 8199d90f715SBarry Smith /*@ 8209d90f715SBarry Smith ISGlobalToLocalMappingApplyBlock - Provides the local block numbering for a list of integers 8219d90f715SBarry Smith specified with a block global numbering. 8229d90f715SBarry Smith 8239d90f715SBarry Smith Not collective 8249d90f715SBarry Smith 8259d90f715SBarry Smith Input Parameters: 8269d90f715SBarry Smith + mapping - mapping between local and global numbering 8279d90f715SBarry Smith . type - IS_GTOLM_MASK - replaces global indices with no local value with -1 8289d90f715SBarry Smith IS_GTOLM_DROP - drops the indices with no local value from the output list 8299d90f715SBarry Smith . n - number of global indices to map 8309d90f715SBarry Smith - idx - global indices to map 8319d90f715SBarry Smith 8329d90f715SBarry Smith Output Parameters: 8339d90f715SBarry Smith + nout - number of indices in output array (if type == IS_GTOLM_MASK then nout = n) 8349d90f715SBarry Smith - idxout - local index of each global index, one must pass in an array long enough 8359d90f715SBarry Smith to hold all the indices. You can call ISGlobalToLocalMappingApplyBlock() with 8369d90f715SBarry Smith idxout == NULL to determine the required length (returned in nout) 8379d90f715SBarry Smith and then allocate the required space and call ISGlobalToLocalMappingApplyBlock() 8389d90f715SBarry Smith a second time to set the values. 8399d90f715SBarry Smith 8409d90f715SBarry Smith Notes: 8419d90f715SBarry Smith Either nout or idxout may be NULL. idx and idxout may be identical. 8429d90f715SBarry Smith 8439a7b7924SJed Brown For "small" problems when using ISGlobalToLocalMappingApply() and ISGlobalToLocalMappingApplyBlock(), the ISLocalToGlobalMappingType of ISLOCALTOGLOBALMAPPINGBASIC will be used; 844413f72f0SBarry Smith this uses more memory but is faster; this approach is not scalable for extremely large mappings. For large problems ISLOCALTOGLOBALMAPPINGHASH is used, this is scalable. 845413f72f0SBarry Smith Use ISLocalToGlobalMappingSetType() or call ISLocalToGlobalMappingSetFromOptions() with the option -islocaltoglobalmapping_type <basic,hash> to control which is used. 8469d90f715SBarry Smith 8479d90f715SBarry Smith Level: advanced 8489d90f715SBarry Smith 8499d90f715SBarry Smith Developer Note: The manual page states that idx and idxout may be identical but the calling 8509d90f715SBarry Smith sequence declares idx as const so it cannot be the same as idxout. 8519d90f715SBarry Smith 8529d90f715SBarry Smith Concepts: mapping^global to local 8539d90f715SBarry Smith 8549d90f715SBarry Smith .seealso: ISLocalToGlobalMappingApply(), ISGlobalToLocalMappingApply(), ISLocalToGlobalMappingCreate(), 855413f72f0SBarry Smith ISLocalToGlobalMappingDestroy() 8569d90f715SBarry Smith @*/ 857413f72f0SBarry Smith PetscErrorCode ISGlobalToLocalMappingApplyBlock(ISLocalToGlobalMapping mapping,ISGlobalToLocalMappingMode type, 8589d90f715SBarry Smith PetscInt n,const PetscInt idx[],PetscInt *nout,PetscInt idxout[]) 8599d90f715SBarry Smith { 8606849ba73SBarry Smith PetscErrorCode ierr; 861d4bb536fSBarry Smith 8623a40ed3dSBarry Smith PetscFunctionBegin; 8630700a824SBarry Smith PetscValidHeaderSpecific(mapping,IS_LTOGM_CLASSID,1); 864413f72f0SBarry Smith if (!mapping->data) { 865413f72f0SBarry Smith ierr = ISGlobalToLocalMappingSetUp(mapping);CHKERRQ(ierr); 866d4bb536fSBarry Smith } 867413f72f0SBarry Smith ierr = (*mapping->ops->globaltolocalmappingapplyblock)(mapping,type,n,idx,nout,idxout);CHKERRQ(ierr); 8683a40ed3dSBarry Smith PetscFunctionReturn(0); 869d4bb536fSBarry Smith } 87090f02eecSBarry Smith 871413f72f0SBarry Smith 87289d82c54SBarry Smith /*@C 8736a818285SBarry Smith ISLocalToGlobalMappingGetBlockInfo - Gets the neighbor information for each processor and 87489d82c54SBarry Smith each index shared by more than one processor 87589d82c54SBarry Smith 87689d82c54SBarry Smith Collective on ISLocalToGlobalMapping 87789d82c54SBarry Smith 87889d82c54SBarry Smith Input Parameters: 87989d82c54SBarry Smith . mapping - the mapping from local to global indexing 88089d82c54SBarry Smith 88189d82c54SBarry Smith Output Parameter: 88289d82c54SBarry Smith + nproc - number of processors that are connected to this one 88389d82c54SBarry Smith . proc - neighboring processors 88407b52d57SBarry Smith . numproc - number of indices for each subdomain (processor) 8853463a7baSJed Brown - indices - indices of nodes (in local numbering) shared with neighbors (sorted by global numbering) 88689d82c54SBarry Smith 88789d82c54SBarry Smith Level: advanced 88889d82c54SBarry Smith 889273d9f13SBarry Smith Concepts: mapping^local to global 89089d82c54SBarry Smith 8912cfcea29SBarry Smith Fortran Usage: 8922cfcea29SBarry Smith $ ISLocalToGlobalMpngGetInfoSize(ISLocalToGlobalMapping,PetscInt nproc,PetscInt numprocmax,ierr) followed by 8932cfcea29SBarry Smith $ ISLocalToGlobalMappingGetInfo(ISLocalToGlobalMapping,PetscInt nproc, PetscInt procs[nproc],PetscInt numprocs[nproc], 8942cfcea29SBarry Smith PetscInt indices[nproc][numprocmax],ierr) 8952cfcea29SBarry Smith There is no ISLocalToGlobalMappingRestoreInfo() in Fortran. You must make sure that procs[], numprocs[] and 8962cfcea29SBarry Smith indices[][] are large enough arrays, either by allocating them dynamically or defining static ones large enough. 8972cfcea29SBarry Smith 8982cfcea29SBarry Smith 89907b52d57SBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreateIS(), ISLocalToGlobalMappingCreate(), 90007b52d57SBarry Smith ISLocalToGlobalMappingRestoreInfo() 90189d82c54SBarry Smith @*/ 9026a818285SBarry Smith PetscErrorCode ISLocalToGlobalMappingGetBlockInfo(ISLocalToGlobalMapping mapping,PetscInt *nproc,PetscInt *procs[],PetscInt *numprocs[],PetscInt **indices[]) 90389d82c54SBarry Smith { 9046849ba73SBarry Smith PetscErrorCode ierr; 905268a049cSStefano Zampini 906268a049cSStefano Zampini PetscFunctionBegin; 907268a049cSStefano Zampini PetscValidHeaderSpecific(mapping,IS_LTOGM_CLASSID,1); 908268a049cSStefano Zampini if (mapping->info_cached) { 909268a049cSStefano Zampini *nproc = mapping->info_nproc; 910268a049cSStefano Zampini *procs = mapping->info_procs; 911268a049cSStefano Zampini *numprocs = mapping->info_numprocs; 912268a049cSStefano Zampini *indices = mapping->info_indices; 913268a049cSStefano Zampini } else { 914268a049cSStefano Zampini ierr = ISLocalToGlobalMappingGetBlockInfo_Private(mapping,nproc,procs,numprocs,indices);CHKERRQ(ierr); 915268a049cSStefano Zampini } 916268a049cSStefano Zampini PetscFunctionReturn(0); 917268a049cSStefano Zampini } 918268a049cSStefano Zampini 919268a049cSStefano Zampini static PetscErrorCode ISLocalToGlobalMappingGetBlockInfo_Private(ISLocalToGlobalMapping mapping,PetscInt *nproc,PetscInt *procs[],PetscInt *numprocs[],PetscInt **indices[]) 920268a049cSStefano Zampini { 921268a049cSStefano Zampini PetscErrorCode ierr; 92297f1f81fSBarry Smith PetscMPIInt size,rank,tag1,tag2,tag3,*len,*source,imdex; 92332dcc486SBarry Smith PetscInt i,n = mapping->n,Ng,ng,max = 0,*lindices = mapping->indices; 92432dcc486SBarry Smith PetscInt *nprocs,*owner,nsends,*sends,j,*starts,nmax,nrecvs,*recvs,proc; 92597f1f81fSBarry Smith PetscInt cnt,scale,*ownedsenders,*nownedsenders,rstart,nowned; 92632dcc486SBarry Smith PetscInt node,nownedm,nt,*sends2,nsends2,*starts2,*lens2,*dest,nrecvs2,*starts3,*recvs2,k,*bprocs,*tmp; 92732dcc486SBarry Smith PetscInt first_procs,first_numprocs,*first_indices; 92889d82c54SBarry Smith MPI_Request *recv_waits,*send_waits; 92930dcb7c9SBarry Smith MPI_Status recv_status,*send_status,*recv_statuses; 930ce94432eSBarry Smith MPI_Comm comm; 931ace3abfcSBarry Smith PetscBool debug = PETSC_FALSE; 93289d82c54SBarry Smith 93389d82c54SBarry Smith PetscFunctionBegin; 934ce94432eSBarry Smith ierr = PetscObjectGetComm((PetscObject)mapping,&comm);CHKERRQ(ierr); 93524cf384cSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 93624cf384cSBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 93724cf384cSBarry Smith if (size == 1) { 93824cf384cSBarry Smith *nproc = 0; 9390298fd71SBarry Smith *procs = NULL; 94095dccacaSBarry Smith ierr = PetscNew(numprocs);CHKERRQ(ierr); 9411e2105dcSBarry Smith (*numprocs)[0] = 0; 94295dccacaSBarry Smith ierr = PetscNew(indices);CHKERRQ(ierr); 9430298fd71SBarry Smith (*indices)[0] = NULL; 944268a049cSStefano Zampini /* save info for reuse */ 945268a049cSStefano Zampini mapping->info_nproc = *nproc; 946268a049cSStefano Zampini mapping->info_procs = *procs; 947268a049cSStefano Zampini mapping->info_numprocs = *numprocs; 948268a049cSStefano Zampini mapping->info_indices = *indices; 949268a049cSStefano Zampini mapping->info_cached = PETSC_TRUE; 95024cf384cSBarry Smith PetscFunctionReturn(0); 95124cf384cSBarry Smith } 95224cf384cSBarry Smith 953c5929fdfSBarry Smith ierr = PetscOptionsGetBool(((PetscObject)mapping)->options,NULL,"-islocaltoglobalmappinggetinfo_debug",&debug,NULL);CHKERRQ(ierr); 95407b52d57SBarry Smith 9553677ff5aSBarry Smith /* 9566a818285SBarry Smith Notes on ISLocalToGlobalMappingGetBlockInfo 9573677ff5aSBarry Smith 9583677ff5aSBarry Smith globally owned node - the nodes that have been assigned to this processor in global 9593677ff5aSBarry Smith numbering, just for this routine. 9603677ff5aSBarry Smith 9613677ff5aSBarry Smith nontrivial globally owned node - node assigned to this processor that is on a subdomain 9623677ff5aSBarry Smith boundary (i.e. is has more than one local owner) 9633677ff5aSBarry Smith 9643677ff5aSBarry Smith locally owned node - node that exists on this processors subdomain 9653677ff5aSBarry Smith 9663677ff5aSBarry Smith nontrivial locally owned node - node that is not in the interior (i.e. has more than one 9673677ff5aSBarry Smith local subdomain 9683677ff5aSBarry Smith */ 96924cf384cSBarry Smith ierr = PetscObjectGetNewTag((PetscObject)mapping,&tag1);CHKERRQ(ierr); 97024cf384cSBarry Smith ierr = PetscObjectGetNewTag((PetscObject)mapping,&tag2);CHKERRQ(ierr); 97124cf384cSBarry Smith ierr = PetscObjectGetNewTag((PetscObject)mapping,&tag3);CHKERRQ(ierr); 97289d82c54SBarry Smith 97389d82c54SBarry Smith for (i=0; i<n; i++) { 97489d82c54SBarry Smith if (lindices[i] > max) max = lindices[i]; 97589d82c54SBarry Smith } 976b2566f29SBarry Smith ierr = MPIU_Allreduce(&max,&Ng,1,MPIU_INT,MPI_MAX,comm);CHKERRQ(ierr); 97778058e43SBarry Smith Ng++; 97889d82c54SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 97989d82c54SBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 980bc8ff85bSBarry Smith scale = Ng/size + 1; 981a2e34c3dSBarry Smith ng = scale; if (rank == size-1) ng = Ng - scale*(size-1); ng = PetscMax(1,ng); 982caba0dd0SBarry Smith rstart = scale*rank; 98389d82c54SBarry Smith 98489d82c54SBarry Smith /* determine ownership ranges of global indices */ 985785e854fSJed Brown ierr = PetscMalloc1(2*size,&nprocs);CHKERRQ(ierr); 98632dcc486SBarry Smith ierr = PetscMemzero(nprocs,2*size*sizeof(PetscInt));CHKERRQ(ierr); 98789d82c54SBarry Smith 98889d82c54SBarry Smith /* determine owners of each local node */ 989785e854fSJed Brown ierr = PetscMalloc1(n,&owner);CHKERRQ(ierr); 99089d82c54SBarry Smith for (i=0; i<n; i++) { 9913677ff5aSBarry Smith proc = lindices[i]/scale; /* processor that globally owns this index */ 99227c402fcSBarry Smith nprocs[2*proc+1] = 1; /* processor globally owns at least one of ours */ 9933677ff5aSBarry Smith owner[i] = proc; 99427c402fcSBarry Smith nprocs[2*proc]++; /* count of how many that processor globally owns of ours */ 99589d82c54SBarry Smith } 99627c402fcSBarry Smith nsends = 0; for (i=0; i<size; i++) nsends += nprocs[2*i+1]; 9977904a332SBarry Smith ierr = PetscInfo1(mapping,"Number of global owners for my local data %D\n",nsends);CHKERRQ(ierr); 99889d82c54SBarry Smith 99989d82c54SBarry Smith /* inform other processors of number of messages and max length*/ 100027c402fcSBarry Smith ierr = PetscMaxSum(comm,nprocs,&nmax,&nrecvs);CHKERRQ(ierr); 10017904a332SBarry Smith ierr = PetscInfo1(mapping,"Number of local owners for my global data %D\n",nrecvs);CHKERRQ(ierr); 100289d82c54SBarry Smith 100389d82c54SBarry Smith /* post receives for owned rows */ 1004785e854fSJed Brown ierr = PetscMalloc1((2*nrecvs+1)*(nmax+1),&recvs);CHKERRQ(ierr); 1005854ce69bSBarry Smith ierr = PetscMalloc1(nrecvs+1,&recv_waits);CHKERRQ(ierr); 100689d82c54SBarry Smith for (i=0; i<nrecvs; i++) { 100732dcc486SBarry Smith ierr = MPI_Irecv(recvs+2*nmax*i,2*nmax,MPIU_INT,MPI_ANY_SOURCE,tag1,comm,recv_waits+i);CHKERRQ(ierr); 100889d82c54SBarry Smith } 100989d82c54SBarry Smith 101089d82c54SBarry Smith /* pack messages containing lists of local nodes to owners */ 1011854ce69bSBarry Smith ierr = PetscMalloc1(2*n+1,&sends);CHKERRQ(ierr); 1012854ce69bSBarry Smith ierr = PetscMalloc1(size+1,&starts);CHKERRQ(ierr); 101389d82c54SBarry Smith starts[0] = 0; 1014f6e5521dSKarl Rupp for (i=1; i<size; i++) starts[i] = starts[i-1] + 2*nprocs[2*i-2]; 101589d82c54SBarry Smith for (i=0; i<n; i++) { 101689d82c54SBarry Smith sends[starts[owner[i]]++] = lindices[i]; 101730dcb7c9SBarry Smith sends[starts[owner[i]]++] = i; 101889d82c54SBarry Smith } 101989d82c54SBarry Smith ierr = PetscFree(owner);CHKERRQ(ierr); 102089d82c54SBarry Smith starts[0] = 0; 1021f6e5521dSKarl Rupp for (i=1; i<size; i++) starts[i] = starts[i-1] + 2*nprocs[2*i-2]; 102289d82c54SBarry Smith 102389d82c54SBarry Smith /* send the messages */ 1024854ce69bSBarry Smith ierr = PetscMalloc1(nsends+1,&send_waits);CHKERRQ(ierr); 1025854ce69bSBarry Smith ierr = PetscMalloc1(nsends+1,&dest);CHKERRQ(ierr); 102689d82c54SBarry Smith cnt = 0; 102789d82c54SBarry Smith for (i=0; i<size; i++) { 102827c402fcSBarry Smith if (nprocs[2*i]) { 102932dcc486SBarry Smith ierr = MPI_Isend(sends+starts[i],2*nprocs[2*i],MPIU_INT,i,tag1,comm,send_waits+cnt);CHKERRQ(ierr); 103030dcb7c9SBarry Smith dest[cnt] = i; 103189d82c54SBarry Smith cnt++; 103289d82c54SBarry Smith } 103389d82c54SBarry Smith } 103489d82c54SBarry Smith ierr = PetscFree(starts);CHKERRQ(ierr); 103589d82c54SBarry Smith 103689d82c54SBarry Smith /* wait on receives */ 1037854ce69bSBarry Smith ierr = PetscMalloc1(nrecvs+1,&source);CHKERRQ(ierr); 1038854ce69bSBarry Smith ierr = PetscMalloc1(nrecvs+1,&len);CHKERRQ(ierr); 103989d82c54SBarry Smith cnt = nrecvs; 1040854ce69bSBarry Smith ierr = PetscMalloc1(ng+1,&nownedsenders);CHKERRQ(ierr); 104132dcc486SBarry Smith ierr = PetscMemzero(nownedsenders,ng*sizeof(PetscInt));CHKERRQ(ierr); 104289d82c54SBarry Smith while (cnt) { 104389d82c54SBarry Smith ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr); 104489d82c54SBarry Smith /* unpack receives into our local space */ 104532dcc486SBarry Smith ierr = MPI_Get_count(&recv_status,MPIU_INT,&len[imdex]);CHKERRQ(ierr); 104689d82c54SBarry Smith source[imdex] = recv_status.MPI_SOURCE; 104730dcb7c9SBarry Smith len[imdex] = len[imdex]/2; 1048caba0dd0SBarry Smith /* count how many local owners for each of my global owned indices */ 104930dcb7c9SBarry Smith for (i=0; i<len[imdex]; i++) nownedsenders[recvs[2*imdex*nmax+2*i]-rstart]++; 105089d82c54SBarry Smith cnt--; 105189d82c54SBarry Smith } 105289d82c54SBarry Smith ierr = PetscFree(recv_waits);CHKERRQ(ierr); 105389d82c54SBarry Smith 105430dcb7c9SBarry Smith /* count how many globally owned indices are on an edge multiplied by how many processors own them. */ 1055bc8ff85bSBarry Smith nowned = 0; 1056bc8ff85bSBarry Smith nownedm = 0; 1057bc8ff85bSBarry Smith for (i=0; i<ng; i++) { 1058bc8ff85bSBarry Smith if (nownedsenders[i] > 1) {nownedm += nownedsenders[i]; nowned++;} 1059bc8ff85bSBarry Smith } 1060bc8ff85bSBarry Smith 1061bc8ff85bSBarry Smith /* create single array to contain rank of all local owners of each globally owned index */ 1062854ce69bSBarry Smith ierr = PetscMalloc1(nownedm+1,&ownedsenders);CHKERRQ(ierr); 1063854ce69bSBarry Smith ierr = PetscMalloc1(ng+1,&starts);CHKERRQ(ierr); 1064bc8ff85bSBarry Smith starts[0] = 0; 1065bc8ff85bSBarry Smith for (i=1; i<ng; i++) { 1066bc8ff85bSBarry Smith if (nownedsenders[i-1] > 1) starts[i] = starts[i-1] + nownedsenders[i-1]; 1067bc8ff85bSBarry Smith else starts[i] = starts[i-1]; 1068bc8ff85bSBarry Smith } 1069bc8ff85bSBarry Smith 107030dcb7c9SBarry Smith /* for each nontrival globally owned node list all arriving processors */ 1071bc8ff85bSBarry Smith for (i=0; i<nrecvs; i++) { 1072bc8ff85bSBarry Smith for (j=0; j<len[i]; j++) { 107330dcb7c9SBarry Smith node = recvs[2*i*nmax+2*j]-rstart; 1074f6e5521dSKarl Rupp if (nownedsenders[node] > 1) ownedsenders[starts[node]++] = source[i]; 1075bc8ff85bSBarry Smith } 1076bc8ff85bSBarry Smith } 1077bc8ff85bSBarry Smith 107807b52d57SBarry Smith if (debug) { /* ----------------------------------- */ 107930dcb7c9SBarry Smith starts[0] = 0; 108030dcb7c9SBarry Smith for (i=1; i<ng; i++) { 108130dcb7c9SBarry Smith if (nownedsenders[i-1] > 1) starts[i] = starts[i-1] + nownedsenders[i-1]; 108230dcb7c9SBarry Smith else starts[i] = starts[i-1]; 108330dcb7c9SBarry Smith } 108430dcb7c9SBarry Smith for (i=0; i<ng; i++) { 108530dcb7c9SBarry Smith if (nownedsenders[i] > 1) { 10867904a332SBarry Smith ierr = PetscSynchronizedPrintf(comm,"[%d] global node %D local owner processors: ",rank,i+rstart);CHKERRQ(ierr); 108730dcb7c9SBarry Smith for (j=0; j<nownedsenders[i]; j++) { 10887904a332SBarry Smith ierr = PetscSynchronizedPrintf(comm,"%D ",ownedsenders[starts[i]+j]);CHKERRQ(ierr); 108930dcb7c9SBarry Smith } 109030dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"\n");CHKERRQ(ierr); 109130dcb7c9SBarry Smith } 109230dcb7c9SBarry Smith } 10930ec8b6e3SBarry Smith ierr = PetscSynchronizedFlush(comm,PETSC_STDOUT);CHKERRQ(ierr); 109407b52d57SBarry Smith } /* ----------------------------------- */ 109530dcb7c9SBarry Smith 10963677ff5aSBarry Smith /* wait on original sends */ 10973a96401aSBarry Smith if (nsends) { 1098785e854fSJed Brown ierr = PetscMalloc1(nsends,&send_status);CHKERRQ(ierr); 10993a96401aSBarry Smith ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr); 11003a96401aSBarry Smith ierr = PetscFree(send_status);CHKERRQ(ierr); 11013a96401aSBarry Smith } 110289d82c54SBarry Smith ierr = PetscFree(send_waits);CHKERRQ(ierr); 11033a96401aSBarry Smith ierr = PetscFree(sends);CHKERRQ(ierr); 11043677ff5aSBarry Smith ierr = PetscFree(nprocs);CHKERRQ(ierr); 11053677ff5aSBarry Smith 11063677ff5aSBarry Smith /* pack messages to send back to local owners */ 110730dcb7c9SBarry Smith starts[0] = 0; 110830dcb7c9SBarry Smith for (i=1; i<ng; i++) { 110930dcb7c9SBarry Smith if (nownedsenders[i-1] > 1) starts[i] = starts[i-1] + nownedsenders[i-1]; 111030dcb7c9SBarry Smith else starts[i] = starts[i-1]; 111130dcb7c9SBarry Smith } 111230dcb7c9SBarry Smith nsends2 = nrecvs; 1113854ce69bSBarry Smith ierr = PetscMalloc1(nsends2+1,&nprocs);CHKERRQ(ierr); /* length of each message */ 111430dcb7c9SBarry Smith for (i=0; i<nrecvs; i++) { 111530dcb7c9SBarry Smith nprocs[i] = 1; 111630dcb7c9SBarry Smith for (j=0; j<len[i]; j++) { 111730dcb7c9SBarry Smith node = recvs[2*i*nmax+2*j]-rstart; 1118f6e5521dSKarl Rupp if (nownedsenders[node] > 1) nprocs[i] += 2 + nownedsenders[node]; 111930dcb7c9SBarry Smith } 112030dcb7c9SBarry Smith } 1121f6e5521dSKarl Rupp nt = 0; 1122f6e5521dSKarl Rupp for (i=0; i<nsends2; i++) nt += nprocs[i]; 1123f6e5521dSKarl Rupp 1124854ce69bSBarry Smith ierr = PetscMalloc1(nt+1,&sends2);CHKERRQ(ierr); 1125854ce69bSBarry Smith ierr = PetscMalloc1(nsends2+1,&starts2);CHKERRQ(ierr); 1126f6e5521dSKarl Rupp 1127f6e5521dSKarl Rupp starts2[0] = 0; 1128f6e5521dSKarl Rupp for (i=1; i<nsends2; i++) starts2[i] = starts2[i-1] + nprocs[i-1]; 112930dcb7c9SBarry Smith /* 113030dcb7c9SBarry Smith Each message is 1 + nprocs[i] long, and consists of 113130dcb7c9SBarry Smith (0) the number of nodes being sent back 113230dcb7c9SBarry Smith (1) the local node number, 113330dcb7c9SBarry Smith (2) the number of processors sharing it, 113430dcb7c9SBarry Smith (3) the processors sharing it 113530dcb7c9SBarry Smith */ 113630dcb7c9SBarry Smith for (i=0; i<nsends2; i++) { 113730dcb7c9SBarry Smith cnt = 1; 113830dcb7c9SBarry Smith sends2[starts2[i]] = 0; 113930dcb7c9SBarry Smith for (j=0; j<len[i]; j++) { 114030dcb7c9SBarry Smith node = recvs[2*i*nmax+2*j]-rstart; 114130dcb7c9SBarry Smith if (nownedsenders[node] > 1) { 114230dcb7c9SBarry Smith sends2[starts2[i]]++; 114330dcb7c9SBarry Smith sends2[starts2[i]+cnt++] = recvs[2*i*nmax+2*j+1]; 114430dcb7c9SBarry Smith sends2[starts2[i]+cnt++] = nownedsenders[node]; 114532dcc486SBarry Smith ierr = PetscMemcpy(&sends2[starts2[i]+cnt],&ownedsenders[starts[node]],nownedsenders[node]*sizeof(PetscInt));CHKERRQ(ierr); 114630dcb7c9SBarry Smith cnt += nownedsenders[node]; 114730dcb7c9SBarry Smith } 114830dcb7c9SBarry Smith } 114930dcb7c9SBarry Smith } 115030dcb7c9SBarry Smith 115130dcb7c9SBarry Smith /* receive the message lengths */ 115230dcb7c9SBarry Smith nrecvs2 = nsends; 1153854ce69bSBarry Smith ierr = PetscMalloc1(nrecvs2+1,&lens2);CHKERRQ(ierr); 1154854ce69bSBarry Smith ierr = PetscMalloc1(nrecvs2+1,&starts3);CHKERRQ(ierr); 1155854ce69bSBarry Smith ierr = PetscMalloc1(nrecvs2+1,&recv_waits);CHKERRQ(ierr); 115630dcb7c9SBarry Smith for (i=0; i<nrecvs2; i++) { 1157d44834fbSBarry Smith ierr = MPI_Irecv(&lens2[i],1,MPIU_INT,dest[i],tag2,comm,recv_waits+i);CHKERRQ(ierr); 115830dcb7c9SBarry Smith } 1159d44834fbSBarry Smith 11608a8e0b3aSBarry Smith /* send the message lengths */ 11618a8e0b3aSBarry Smith for (i=0; i<nsends2; i++) { 11628a8e0b3aSBarry Smith ierr = MPI_Send(&nprocs[i],1,MPIU_INT,source[i],tag2,comm);CHKERRQ(ierr); 11638a8e0b3aSBarry Smith } 11648a8e0b3aSBarry Smith 1165d44834fbSBarry Smith /* wait on receives of lens */ 11660c468ba9SBarry Smith if (nrecvs2) { 1167785e854fSJed Brown ierr = PetscMalloc1(nrecvs2,&recv_statuses);CHKERRQ(ierr); 1168d44834fbSBarry Smith ierr = MPI_Waitall(nrecvs2,recv_waits,recv_statuses);CHKERRQ(ierr); 1169d44834fbSBarry Smith ierr = PetscFree(recv_statuses);CHKERRQ(ierr); 11700c468ba9SBarry Smith } 1171a2ea699eSBarry Smith ierr = PetscFree(recv_waits);CHKERRQ(ierr); 1172d44834fbSBarry Smith 117330dcb7c9SBarry Smith starts3[0] = 0; 1174d44834fbSBarry Smith nt = 0; 117530dcb7c9SBarry Smith for (i=0; i<nrecvs2-1; i++) { 117630dcb7c9SBarry Smith starts3[i+1] = starts3[i] + lens2[i]; 1177d44834fbSBarry Smith nt += lens2[i]; 117830dcb7c9SBarry Smith } 117976466f69SStefano Zampini if (nrecvs2) nt += lens2[nrecvs2-1]; 1180d44834fbSBarry Smith 1181854ce69bSBarry Smith ierr = PetscMalloc1(nt+1,&recvs2);CHKERRQ(ierr); 1182854ce69bSBarry Smith ierr = PetscMalloc1(nrecvs2+1,&recv_waits);CHKERRQ(ierr); 118352b72c4aSBarry Smith for (i=0; i<nrecvs2; i++) { 118432dcc486SBarry Smith ierr = MPI_Irecv(recvs2+starts3[i],lens2[i],MPIU_INT,dest[i],tag3,comm,recv_waits+i);CHKERRQ(ierr); 118530dcb7c9SBarry Smith } 118630dcb7c9SBarry Smith 118730dcb7c9SBarry Smith /* send the messages */ 1188854ce69bSBarry Smith ierr = PetscMalloc1(nsends2+1,&send_waits);CHKERRQ(ierr); 118930dcb7c9SBarry Smith for (i=0; i<nsends2; i++) { 119032dcc486SBarry Smith ierr = MPI_Isend(sends2+starts2[i],nprocs[i],MPIU_INT,source[i],tag3,comm,send_waits+i);CHKERRQ(ierr); 119130dcb7c9SBarry Smith } 119230dcb7c9SBarry Smith 119330dcb7c9SBarry Smith /* wait on receives */ 11940c468ba9SBarry Smith if (nrecvs2) { 1195785e854fSJed Brown ierr = PetscMalloc1(nrecvs2,&recv_statuses);CHKERRQ(ierr); 119630dcb7c9SBarry Smith ierr = MPI_Waitall(nrecvs2,recv_waits,recv_statuses);CHKERRQ(ierr); 119730dcb7c9SBarry Smith ierr = PetscFree(recv_statuses);CHKERRQ(ierr); 11980c468ba9SBarry Smith } 119930dcb7c9SBarry Smith ierr = PetscFree(recv_waits);CHKERRQ(ierr); 120030dcb7c9SBarry Smith ierr = PetscFree(nprocs);CHKERRQ(ierr); 120130dcb7c9SBarry Smith 120207b52d57SBarry Smith if (debug) { /* ----------------------------------- */ 120330dcb7c9SBarry Smith cnt = 0; 120430dcb7c9SBarry Smith for (i=0; i<nrecvs2; i++) { 120530dcb7c9SBarry Smith nt = recvs2[cnt++]; 120630dcb7c9SBarry Smith for (j=0; j<nt; j++) { 12077904a332SBarry Smith ierr = PetscSynchronizedPrintf(comm,"[%d] local node %D number of subdomains %D: ",rank,recvs2[cnt],recvs2[cnt+1]);CHKERRQ(ierr); 120830dcb7c9SBarry Smith for (k=0; k<recvs2[cnt+1]; k++) { 12097904a332SBarry Smith ierr = PetscSynchronizedPrintf(comm,"%D ",recvs2[cnt+2+k]);CHKERRQ(ierr); 121030dcb7c9SBarry Smith } 121130dcb7c9SBarry Smith cnt += 2 + recvs2[cnt+1]; 121230dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"\n");CHKERRQ(ierr); 121330dcb7c9SBarry Smith } 121430dcb7c9SBarry Smith } 12150ec8b6e3SBarry Smith ierr = PetscSynchronizedFlush(comm,PETSC_STDOUT);CHKERRQ(ierr); 121607b52d57SBarry Smith } /* ----------------------------------- */ 121730dcb7c9SBarry Smith 121830dcb7c9SBarry Smith /* count number subdomains for each local node */ 1219785e854fSJed Brown ierr = PetscMalloc1(size,&nprocs);CHKERRQ(ierr); 122032dcc486SBarry Smith ierr = PetscMemzero(nprocs,size*sizeof(PetscInt));CHKERRQ(ierr); 122130dcb7c9SBarry Smith cnt = 0; 122230dcb7c9SBarry Smith for (i=0; i<nrecvs2; i++) { 122330dcb7c9SBarry Smith nt = recvs2[cnt++]; 122430dcb7c9SBarry Smith for (j=0; j<nt; j++) { 1225f6e5521dSKarl Rupp for (k=0; k<recvs2[cnt+1]; k++) nprocs[recvs2[cnt+2+k]]++; 122630dcb7c9SBarry Smith cnt += 2 + recvs2[cnt+1]; 122730dcb7c9SBarry Smith } 122830dcb7c9SBarry Smith } 122930dcb7c9SBarry Smith nt = 0; for (i=0; i<size; i++) nt += (nprocs[i] > 0); 123030dcb7c9SBarry Smith *nproc = nt; 1231854ce69bSBarry Smith ierr = PetscMalloc1(nt+1,procs);CHKERRQ(ierr); 1232854ce69bSBarry Smith ierr = PetscMalloc1(nt+1,numprocs);CHKERRQ(ierr); 1233854ce69bSBarry Smith ierr = PetscMalloc1(nt+1,indices);CHKERRQ(ierr); 12340298fd71SBarry Smith for (i=0;i<nt+1;i++) (*indices)[i]=NULL; 1235785e854fSJed Brown ierr = PetscMalloc1(size,&bprocs);CHKERRQ(ierr); 123630dcb7c9SBarry Smith cnt = 0; 123730dcb7c9SBarry Smith for (i=0; i<size; i++) { 123830dcb7c9SBarry Smith if (nprocs[i] > 0) { 123930dcb7c9SBarry Smith bprocs[i] = cnt; 124030dcb7c9SBarry Smith (*procs)[cnt] = i; 124130dcb7c9SBarry Smith (*numprocs)[cnt] = nprocs[i]; 1242785e854fSJed Brown ierr = PetscMalloc1(nprocs[i],&(*indices)[cnt]);CHKERRQ(ierr); 124330dcb7c9SBarry Smith cnt++; 124430dcb7c9SBarry Smith } 124530dcb7c9SBarry Smith } 124630dcb7c9SBarry Smith 124730dcb7c9SBarry Smith /* make the list of subdomains for each nontrivial local node */ 124832dcc486SBarry Smith ierr = PetscMemzero(*numprocs,nt*sizeof(PetscInt));CHKERRQ(ierr); 124930dcb7c9SBarry Smith cnt = 0; 125030dcb7c9SBarry Smith for (i=0; i<nrecvs2; i++) { 125130dcb7c9SBarry Smith nt = recvs2[cnt++]; 125230dcb7c9SBarry Smith for (j=0; j<nt; j++) { 1253f6e5521dSKarl Rupp for (k=0; k<recvs2[cnt+1]; k++) (*indices)[bprocs[recvs2[cnt+2+k]]][(*numprocs)[bprocs[recvs2[cnt+2+k]]]++] = recvs2[cnt]; 125430dcb7c9SBarry Smith cnt += 2 + recvs2[cnt+1]; 125530dcb7c9SBarry Smith } 125630dcb7c9SBarry Smith } 125730dcb7c9SBarry Smith ierr = PetscFree(bprocs);CHKERRQ(ierr); 125807b52d57SBarry Smith ierr = PetscFree(recvs2);CHKERRQ(ierr); 125930dcb7c9SBarry Smith 126007b52d57SBarry Smith /* sort the node indexing by their global numbers */ 126107b52d57SBarry Smith nt = *nproc; 126207b52d57SBarry Smith for (i=0; i<nt; i++) { 1263854ce69bSBarry Smith ierr = PetscMalloc1((*numprocs)[i],&tmp);CHKERRQ(ierr); 1264f6e5521dSKarl Rupp for (j=0; j<(*numprocs)[i]; j++) tmp[j] = lindices[(*indices)[i][j]]; 126507b52d57SBarry Smith ierr = PetscSortIntWithArray((*numprocs)[i],tmp,(*indices)[i]);CHKERRQ(ierr); 126607b52d57SBarry Smith ierr = PetscFree(tmp);CHKERRQ(ierr); 126707b52d57SBarry Smith } 126807b52d57SBarry Smith 126907b52d57SBarry Smith if (debug) { /* ----------------------------------- */ 127030dcb7c9SBarry Smith nt = *nproc; 127130dcb7c9SBarry Smith for (i=0; i<nt; i++) { 12727904a332SBarry Smith ierr = PetscSynchronizedPrintf(comm,"[%d] subdomain %D number of indices %D: ",rank,(*procs)[i],(*numprocs)[i]);CHKERRQ(ierr); 127330dcb7c9SBarry Smith for (j=0; j<(*numprocs)[i]; j++) { 12747904a332SBarry Smith ierr = PetscSynchronizedPrintf(comm,"%D ",(*indices)[i][j]);CHKERRQ(ierr); 127530dcb7c9SBarry Smith } 127630dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"\n");CHKERRQ(ierr); 127730dcb7c9SBarry Smith } 12780ec8b6e3SBarry Smith ierr = PetscSynchronizedFlush(comm,PETSC_STDOUT);CHKERRQ(ierr); 127907b52d57SBarry Smith } /* ----------------------------------- */ 128030dcb7c9SBarry Smith 128130dcb7c9SBarry Smith /* wait on sends */ 128230dcb7c9SBarry Smith if (nsends2) { 1283785e854fSJed Brown ierr = PetscMalloc1(nsends2,&send_status);CHKERRQ(ierr); 128430dcb7c9SBarry Smith ierr = MPI_Waitall(nsends2,send_waits,send_status);CHKERRQ(ierr); 128530dcb7c9SBarry Smith ierr = PetscFree(send_status);CHKERRQ(ierr); 128630dcb7c9SBarry Smith } 128730dcb7c9SBarry Smith 128830dcb7c9SBarry Smith ierr = PetscFree(starts3);CHKERRQ(ierr); 128930dcb7c9SBarry Smith ierr = PetscFree(dest);CHKERRQ(ierr); 129030dcb7c9SBarry Smith ierr = PetscFree(send_waits);CHKERRQ(ierr); 12913677ff5aSBarry Smith 1292bc8ff85bSBarry Smith ierr = PetscFree(nownedsenders);CHKERRQ(ierr); 1293bc8ff85bSBarry Smith ierr = PetscFree(ownedsenders);CHKERRQ(ierr); 1294bc8ff85bSBarry Smith ierr = PetscFree(starts);CHKERRQ(ierr); 129530dcb7c9SBarry Smith ierr = PetscFree(starts2);CHKERRQ(ierr); 129630dcb7c9SBarry Smith ierr = PetscFree(lens2);CHKERRQ(ierr); 129789d82c54SBarry Smith 129889d82c54SBarry Smith ierr = PetscFree(source);CHKERRQ(ierr); 129997f1f81fSBarry Smith ierr = PetscFree(len);CHKERRQ(ierr); 130089d82c54SBarry Smith ierr = PetscFree(recvs);CHKERRQ(ierr); 13013a96401aSBarry Smith ierr = PetscFree(nprocs);CHKERRQ(ierr); 130230dcb7c9SBarry Smith ierr = PetscFree(sends2);CHKERRQ(ierr); 130324cf384cSBarry Smith 130424cf384cSBarry Smith /* put the information about myself as the first entry in the list */ 130524cf384cSBarry Smith first_procs = (*procs)[0]; 130624cf384cSBarry Smith first_numprocs = (*numprocs)[0]; 130724cf384cSBarry Smith first_indices = (*indices)[0]; 130824cf384cSBarry Smith for (i=0; i<*nproc; i++) { 130924cf384cSBarry Smith if ((*procs)[i] == rank) { 131024cf384cSBarry Smith (*procs)[0] = (*procs)[i]; 131124cf384cSBarry Smith (*numprocs)[0] = (*numprocs)[i]; 131224cf384cSBarry Smith (*indices)[0] = (*indices)[i]; 131324cf384cSBarry Smith (*procs)[i] = first_procs; 131424cf384cSBarry Smith (*numprocs)[i] = first_numprocs; 131524cf384cSBarry Smith (*indices)[i] = first_indices; 131624cf384cSBarry Smith break; 131724cf384cSBarry Smith } 131824cf384cSBarry Smith } 1319268a049cSStefano Zampini 1320268a049cSStefano Zampini /* save info for reuse */ 1321268a049cSStefano Zampini mapping->info_nproc = *nproc; 1322268a049cSStefano Zampini mapping->info_procs = *procs; 1323268a049cSStefano Zampini mapping->info_numprocs = *numprocs; 1324268a049cSStefano Zampini mapping->info_indices = *indices; 1325268a049cSStefano Zampini mapping->info_cached = PETSC_TRUE; 132689d82c54SBarry Smith PetscFunctionReturn(0); 132789d82c54SBarry Smith } 132889d82c54SBarry Smith 13296a818285SBarry Smith /*@C 13306a818285SBarry Smith ISLocalToGlobalMappingRestoreBlockInfo - Frees the memory allocated by ISLocalToGlobalMappingGetBlockInfo() 13316a818285SBarry Smith 13326a818285SBarry Smith Collective on ISLocalToGlobalMapping 13336a818285SBarry Smith 13346a818285SBarry Smith Input Parameters: 13356a818285SBarry Smith . mapping - the mapping from local to global indexing 13366a818285SBarry Smith 13376a818285SBarry Smith Output Parameter: 13386a818285SBarry Smith + nproc - number of processors that are connected to this one 13396a818285SBarry Smith . proc - neighboring processors 13406a818285SBarry Smith . numproc - number of indices for each processor 13416a818285SBarry Smith - indices - indices of local nodes shared with neighbor (sorted by global numbering) 13426a818285SBarry Smith 13436a818285SBarry Smith Level: advanced 13446a818285SBarry Smith 13456a818285SBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreateIS(), ISLocalToGlobalMappingCreate(), 13466a818285SBarry Smith ISLocalToGlobalMappingGetInfo() 13476a818285SBarry Smith @*/ 13486a818285SBarry Smith PetscErrorCode ISLocalToGlobalMappingRestoreBlockInfo(ISLocalToGlobalMapping mapping,PetscInt *nproc,PetscInt *procs[],PetscInt *numprocs[],PetscInt **indices[]) 13496a818285SBarry Smith { 13506a818285SBarry Smith PetscErrorCode ierr; 13516a818285SBarry Smith 13526a818285SBarry Smith PetscFunctionBegin; 1353cbc1caf0SMatthew G. Knepley PetscValidHeaderSpecific(mapping,IS_LTOGM_CLASSID,1); 1354268a049cSStefano Zampini if (mapping->info_free) { 13556a818285SBarry Smith ierr = PetscFree(*numprocs);CHKERRQ(ierr); 13566a818285SBarry Smith if (*indices) { 1357268a049cSStefano Zampini PetscInt i; 1358268a049cSStefano Zampini 13596a818285SBarry Smith ierr = PetscFree((*indices)[0]);CHKERRQ(ierr); 13606a818285SBarry Smith for (i=1; i<*nproc; i++) { 13616a818285SBarry Smith ierr = PetscFree((*indices)[i]);CHKERRQ(ierr); 13626a818285SBarry Smith } 13636a818285SBarry Smith ierr = PetscFree(*indices);CHKERRQ(ierr); 13646a818285SBarry Smith } 1365268a049cSStefano Zampini } 1366268a049cSStefano Zampini *nproc = 0; 1367268a049cSStefano Zampini *procs = NULL; 1368268a049cSStefano Zampini *numprocs = NULL; 1369268a049cSStefano Zampini *indices = NULL; 13706a818285SBarry Smith PetscFunctionReturn(0); 13716a818285SBarry Smith } 13726a818285SBarry Smith 13736a818285SBarry Smith /*@C 13746a818285SBarry Smith ISLocalToGlobalMappingGetInfo - Gets the neighbor information for each processor and 13756a818285SBarry Smith each index shared by more than one processor 13766a818285SBarry Smith 13776a818285SBarry Smith Collective on ISLocalToGlobalMapping 13786a818285SBarry Smith 13796a818285SBarry Smith Input Parameters: 13806a818285SBarry Smith . mapping - the mapping from local to global indexing 13816a818285SBarry Smith 13826a818285SBarry Smith Output Parameter: 13836a818285SBarry Smith + nproc - number of processors that are connected to this one 13846a818285SBarry Smith . proc - neighboring processors 13856a818285SBarry Smith . numproc - number of indices for each subdomain (processor) 13866a818285SBarry Smith - indices - indices of nodes (in local numbering) shared with neighbors (sorted by global numbering) 13876a818285SBarry Smith 13886a818285SBarry Smith Level: advanced 13896a818285SBarry Smith 13906a818285SBarry Smith Concepts: mapping^local to global 13916a818285SBarry Smith 13926a818285SBarry Smith Fortran Usage: 13936a818285SBarry Smith $ ISLocalToGlobalMpngGetInfoSize(ISLocalToGlobalMapping,PetscInt nproc,PetscInt numprocmax,ierr) followed by 13946a818285SBarry Smith $ ISLocalToGlobalMappingGetInfo(ISLocalToGlobalMapping,PetscInt nproc, PetscInt procs[nproc],PetscInt numprocs[nproc], 13956a818285SBarry Smith PetscInt indices[nproc][numprocmax],ierr) 13966a818285SBarry Smith There is no ISLocalToGlobalMappingRestoreInfo() in Fortran. You must make sure that procs[], numprocs[] and 13976a818285SBarry Smith indices[][] are large enough arrays, either by allocating them dynamically or defining static ones large enough. 13986a818285SBarry Smith 13996a818285SBarry Smith 14006a818285SBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreateIS(), ISLocalToGlobalMappingCreate(), 14016a818285SBarry Smith ISLocalToGlobalMappingRestoreInfo() 14026a818285SBarry Smith @*/ 14036a818285SBarry Smith PetscErrorCode ISLocalToGlobalMappingGetInfo(ISLocalToGlobalMapping mapping,PetscInt *nproc,PetscInt *procs[],PetscInt *numprocs[],PetscInt **indices[]) 14046a818285SBarry Smith { 14056a818285SBarry Smith PetscErrorCode ierr; 1406268a049cSStefano Zampini PetscInt **bindices = NULL,*bnumprocs = NULL,bs = mapping->bs,i,j,k; 14076a818285SBarry Smith 14086a818285SBarry Smith PetscFunctionBegin; 14096a818285SBarry Smith PetscValidHeaderSpecific(mapping,IS_LTOGM_CLASSID,1); 1410268a049cSStefano Zampini ierr = ISLocalToGlobalMappingGetBlockInfo(mapping,nproc,procs,&bnumprocs,&bindices);CHKERRQ(ierr); 1411268a049cSStefano Zampini if (bs > 1) { /* we need to expand the cached info */ 1412732f65e3SBarry Smith ierr = PetscCalloc1(*nproc,&*indices);CHKERRQ(ierr); 1413268a049cSStefano Zampini ierr = PetscCalloc1(*nproc,&*numprocs);CHKERRQ(ierr); 14146a818285SBarry Smith for (i=0; i<*nproc; i++) { 1415268a049cSStefano Zampini ierr = PetscMalloc1(bs*bnumprocs[i],&(*indices)[i]);CHKERRQ(ierr); 1416268a049cSStefano Zampini for (j=0; j<bnumprocs[i]; j++) { 14176a818285SBarry Smith for (k=0; k<bs; k++) { 14186a818285SBarry Smith (*indices)[i][j*bs+k] = bs*bindices[i][j] + k; 14196a818285SBarry Smith } 14206a818285SBarry Smith } 1421268a049cSStefano Zampini (*numprocs)[i] = bnumprocs[i]*bs; 14226a818285SBarry Smith } 1423268a049cSStefano Zampini mapping->info_free = PETSC_TRUE; 1424268a049cSStefano Zampini } else { 1425268a049cSStefano Zampini *numprocs = bnumprocs; 1426268a049cSStefano Zampini *indices = bindices; 14276a818285SBarry Smith } 14286a818285SBarry Smith PetscFunctionReturn(0); 14296a818285SBarry Smith } 14306a818285SBarry Smith 143107b52d57SBarry Smith /*@C 143207b52d57SBarry Smith ISLocalToGlobalMappingRestoreInfo - Frees the memory allocated by ISLocalToGlobalMappingGetInfo() 143389d82c54SBarry Smith 143407b52d57SBarry Smith Collective on ISLocalToGlobalMapping 143507b52d57SBarry Smith 143607b52d57SBarry Smith Input Parameters: 143707b52d57SBarry Smith . mapping - the mapping from local to global indexing 143807b52d57SBarry Smith 143907b52d57SBarry Smith Output Parameter: 144007b52d57SBarry Smith + nproc - number of processors that are connected to this one 144107b52d57SBarry Smith . proc - neighboring processors 144207b52d57SBarry Smith . numproc - number of indices for each processor 144307b52d57SBarry Smith - indices - indices of local nodes shared with neighbor (sorted by global numbering) 144407b52d57SBarry Smith 144507b52d57SBarry Smith Level: advanced 144607b52d57SBarry Smith 144707b52d57SBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreateIS(), ISLocalToGlobalMappingCreate(), 144807b52d57SBarry Smith ISLocalToGlobalMappingGetInfo() 144907b52d57SBarry Smith @*/ 14507087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingRestoreInfo(ISLocalToGlobalMapping mapping,PetscInt *nproc,PetscInt *procs[],PetscInt *numprocs[],PetscInt **indices[]) 145107b52d57SBarry Smith { 14526849ba73SBarry Smith PetscErrorCode ierr; 145307b52d57SBarry Smith 145407b52d57SBarry Smith PetscFunctionBegin; 14556a818285SBarry Smith ierr = ISLocalToGlobalMappingRestoreBlockInfo(mapping,nproc,procs,numprocs,indices);CHKERRQ(ierr); 145607b52d57SBarry Smith PetscFunctionReturn(0); 145707b52d57SBarry Smith } 145886994e45SJed Brown 145986994e45SJed Brown /*@C 1460107e9a97SBarry Smith ISLocalToGlobalMappingGetIndices - Get global indices for every local point that is mapped 146186994e45SJed Brown 146286994e45SJed Brown Not Collective 146386994e45SJed Brown 146486994e45SJed Brown Input Arguments: 146586994e45SJed Brown . ltog - local to global mapping 146686994e45SJed Brown 146786994e45SJed Brown Output Arguments: 1468565245c5SBarry Smith . array - array of indices, the length of this array may be obtained with ISLocalToGlobalMappingGetSize() 146986994e45SJed Brown 147086994e45SJed Brown Level: advanced 147186994e45SJed Brown 1472107e9a97SBarry Smith Notes: ISLocalToGlobalMappingGetSize() returns the length the this array 1473107e9a97SBarry Smith 1474107e9a97SBarry Smith .seealso: ISLocalToGlobalMappingCreate(), ISLocalToGlobalMappingApply(), ISLocalToGlobalMappingRestoreIndices(), ISLocalToGlobalMappingGetBlockIndices(), ISLocalToGlobalMappingRestoreBlockIndices() 147586994e45SJed Brown @*/ 14767087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingGetIndices(ISLocalToGlobalMapping ltog,const PetscInt **array) 147786994e45SJed Brown { 147886994e45SJed Brown PetscFunctionBegin; 147986994e45SJed Brown PetscValidHeaderSpecific(ltog,IS_LTOGM_CLASSID,1); 148086994e45SJed Brown PetscValidPointer(array,2); 148145b6f7e9SBarry Smith if (ltog->bs == 1) { 148286994e45SJed Brown *array = ltog->indices; 148345b6f7e9SBarry Smith } else { 148445b6f7e9SBarry Smith PetscInt *jj,k,i,j,n = ltog->n, bs = ltog->bs; 148545b6f7e9SBarry Smith const PetscInt *ii; 148645b6f7e9SBarry Smith PetscErrorCode ierr; 148745b6f7e9SBarry Smith 148845b6f7e9SBarry Smith ierr = PetscMalloc1(bs*n,&jj);CHKERRQ(ierr); 148945b6f7e9SBarry Smith *array = jj; 149045b6f7e9SBarry Smith k = 0; 149145b6f7e9SBarry Smith ii = ltog->indices; 149245b6f7e9SBarry Smith for (i=0; i<n; i++) 149345b6f7e9SBarry Smith for (j=0; j<bs; j++) 149445b6f7e9SBarry Smith jj[k++] = bs*ii[i] + j; 149545b6f7e9SBarry Smith } 149686994e45SJed Brown PetscFunctionReturn(0); 149786994e45SJed Brown } 149886994e45SJed Brown 149986994e45SJed Brown /*@C 1500193a2b41SJulian Andrej ISLocalToGlobalMappingRestoreIndices - Restore indices obtained with ISLocalToGlobalMappingGetIndices() 150186994e45SJed Brown 150286994e45SJed Brown Not Collective 150386994e45SJed Brown 150486994e45SJed Brown Input Arguments: 150586994e45SJed Brown + ltog - local to global mapping 150686994e45SJed Brown - array - array of indices 150786994e45SJed Brown 150886994e45SJed Brown Level: advanced 150986994e45SJed Brown 151086994e45SJed Brown .seealso: ISLocalToGlobalMappingCreate(), ISLocalToGlobalMappingApply(), ISLocalToGlobalMappingGetIndices() 151186994e45SJed Brown @*/ 15127087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingRestoreIndices(ISLocalToGlobalMapping ltog,const PetscInt **array) 151386994e45SJed Brown { 151486994e45SJed Brown PetscFunctionBegin; 151586994e45SJed Brown PetscValidHeaderSpecific(ltog,IS_LTOGM_CLASSID,1); 151686994e45SJed Brown PetscValidPointer(array,2); 151745b6f7e9SBarry Smith if (ltog->bs == 1 && *array != ltog->indices) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_BADPTR,"Trying to return mismatched pointer"); 151845b6f7e9SBarry Smith 151945b6f7e9SBarry Smith if (ltog->bs > 1) { 152045b6f7e9SBarry Smith PetscErrorCode ierr; 152145b6f7e9SBarry Smith ierr = PetscFree(*(void**)array);CHKERRQ(ierr); 152245b6f7e9SBarry Smith } 152345b6f7e9SBarry Smith PetscFunctionReturn(0); 152445b6f7e9SBarry Smith } 152545b6f7e9SBarry Smith 152645b6f7e9SBarry Smith /*@C 152745b6f7e9SBarry Smith ISLocalToGlobalMappingGetBlockIndices - Get global indices for every local block 152845b6f7e9SBarry Smith 152945b6f7e9SBarry Smith Not Collective 153045b6f7e9SBarry Smith 153145b6f7e9SBarry Smith Input Arguments: 153245b6f7e9SBarry Smith . ltog - local to global mapping 153345b6f7e9SBarry Smith 153445b6f7e9SBarry Smith Output Arguments: 153545b6f7e9SBarry Smith . array - array of indices 153645b6f7e9SBarry Smith 153745b6f7e9SBarry Smith Level: advanced 153845b6f7e9SBarry Smith 153945b6f7e9SBarry Smith .seealso: ISLocalToGlobalMappingCreate(), ISLocalToGlobalMappingApply(), ISLocalToGlobalMappingRestoreBlockIndices() 154045b6f7e9SBarry Smith @*/ 154145b6f7e9SBarry Smith PetscErrorCode ISLocalToGlobalMappingGetBlockIndices(ISLocalToGlobalMapping ltog,const PetscInt **array) 154245b6f7e9SBarry Smith { 154345b6f7e9SBarry Smith PetscFunctionBegin; 154445b6f7e9SBarry Smith PetscValidHeaderSpecific(ltog,IS_LTOGM_CLASSID,1); 154545b6f7e9SBarry Smith PetscValidPointer(array,2); 154645b6f7e9SBarry Smith *array = ltog->indices; 154745b6f7e9SBarry Smith PetscFunctionReturn(0); 154845b6f7e9SBarry Smith } 154945b6f7e9SBarry Smith 155045b6f7e9SBarry Smith /*@C 155145b6f7e9SBarry Smith ISLocalToGlobalMappingRestoreBlockIndices - Restore indices obtained with ISLocalToGlobalMappingGetBlockIndices() 155245b6f7e9SBarry Smith 155345b6f7e9SBarry Smith Not Collective 155445b6f7e9SBarry Smith 155545b6f7e9SBarry Smith Input Arguments: 155645b6f7e9SBarry Smith + ltog - local to global mapping 155745b6f7e9SBarry Smith - array - array of indices 155845b6f7e9SBarry Smith 155945b6f7e9SBarry Smith Level: advanced 156045b6f7e9SBarry Smith 156145b6f7e9SBarry Smith .seealso: ISLocalToGlobalMappingCreate(), ISLocalToGlobalMappingApply(), ISLocalToGlobalMappingGetIndices() 156245b6f7e9SBarry Smith @*/ 156345b6f7e9SBarry Smith PetscErrorCode ISLocalToGlobalMappingRestoreBlockIndices(ISLocalToGlobalMapping ltog,const PetscInt **array) 156445b6f7e9SBarry Smith { 156545b6f7e9SBarry Smith PetscFunctionBegin; 156645b6f7e9SBarry Smith PetscValidHeaderSpecific(ltog,IS_LTOGM_CLASSID,1); 156745b6f7e9SBarry Smith PetscValidPointer(array,2); 156886994e45SJed Brown if (*array != ltog->indices) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_BADPTR,"Trying to return mismatched pointer"); 15690298fd71SBarry Smith *array = NULL; 157086994e45SJed Brown PetscFunctionReturn(0); 157186994e45SJed Brown } 1572f7efa3c7SJed Brown 1573f7efa3c7SJed Brown /*@C 1574f7efa3c7SJed Brown ISLocalToGlobalMappingConcatenate - Create a new mapping that concatenates a list of mappings 1575f7efa3c7SJed Brown 1576f7efa3c7SJed Brown Not Collective 1577f7efa3c7SJed Brown 1578f7efa3c7SJed Brown Input Arguments: 1579f7efa3c7SJed Brown + comm - communicator for the new mapping, must contain the communicator of every mapping to concatenate 1580f7efa3c7SJed Brown . n - number of mappings to concatenate 1581f7efa3c7SJed Brown - ltogs - local to global mappings 1582f7efa3c7SJed Brown 1583f7efa3c7SJed Brown Output Arguments: 1584f7efa3c7SJed Brown . ltogcat - new mapping 1585f7efa3c7SJed Brown 15869d90f715SBarry Smith Note: this currently always returns a mapping with block size of 1 15879d90f715SBarry Smith 15889d90f715SBarry Smith Developer Note: If all the input mapping have the same block size we could easily handle that as a special case 15899d90f715SBarry Smith 1590f7efa3c7SJed Brown Level: advanced 1591f7efa3c7SJed Brown 1592f7efa3c7SJed Brown .seealso: ISLocalToGlobalMappingCreate() 1593f7efa3c7SJed Brown @*/ 1594f7efa3c7SJed Brown PetscErrorCode ISLocalToGlobalMappingConcatenate(MPI_Comm comm,PetscInt n,const ISLocalToGlobalMapping ltogs[],ISLocalToGlobalMapping *ltogcat) 1595f7efa3c7SJed Brown { 1596f7efa3c7SJed Brown PetscInt i,cnt,m,*idx; 1597f7efa3c7SJed Brown PetscErrorCode ierr; 1598f7efa3c7SJed Brown 1599f7efa3c7SJed Brown PetscFunctionBegin; 1600f7efa3c7SJed Brown if (n < 0) SETERRQ1(comm,PETSC_ERR_ARG_OUTOFRANGE,"Must have a non-negative number of mappings, given %D",n); 1601f7efa3c7SJed Brown if (n > 0) PetscValidPointer(ltogs,3); 1602f7efa3c7SJed Brown for (i=0; i<n; i++) PetscValidHeaderSpecific(ltogs[i],IS_LTOGM_CLASSID,3); 1603f7efa3c7SJed Brown PetscValidPointer(ltogcat,4); 1604f7efa3c7SJed Brown for (cnt=0,i=0; i<n; i++) { 1605f7efa3c7SJed Brown ierr = ISLocalToGlobalMappingGetSize(ltogs[i],&m);CHKERRQ(ierr); 1606f7efa3c7SJed Brown cnt += m; 1607f7efa3c7SJed Brown } 1608785e854fSJed Brown ierr = PetscMalloc1(cnt,&idx);CHKERRQ(ierr); 1609f7efa3c7SJed Brown for (cnt=0,i=0; i<n; i++) { 1610f7efa3c7SJed Brown const PetscInt *subidx; 1611f7efa3c7SJed Brown ierr = ISLocalToGlobalMappingGetSize(ltogs[i],&m);CHKERRQ(ierr); 1612f7efa3c7SJed Brown ierr = ISLocalToGlobalMappingGetIndices(ltogs[i],&subidx);CHKERRQ(ierr); 1613f7efa3c7SJed Brown ierr = PetscMemcpy(&idx[cnt],subidx,m*sizeof(PetscInt));CHKERRQ(ierr); 1614f7efa3c7SJed Brown ierr = ISLocalToGlobalMappingRestoreIndices(ltogs[i],&subidx);CHKERRQ(ierr); 1615f7efa3c7SJed Brown cnt += m; 1616f7efa3c7SJed Brown } 1617f0413b6fSBarry Smith ierr = ISLocalToGlobalMappingCreate(comm,1,cnt,idx,PETSC_OWN_POINTER,ltogcat);CHKERRQ(ierr); 1618f7efa3c7SJed Brown PetscFunctionReturn(0); 1619f7efa3c7SJed Brown } 162004a59952SBarry Smith 1621413f72f0SBarry Smith /*MC 1622413f72f0SBarry Smith ISLOCALTOGLOBALMAPPINGBASIC - basic implementation of the ISLocalToGlobalMapping object. When ISGlobalToLocalMappingApply() is 1623413f72f0SBarry Smith used this is good for only small and moderate size problems. 1624413f72f0SBarry Smith 1625413f72f0SBarry Smith Options Database Keys: 1626413f72f0SBarry Smith + -islocaltoglobalmapping_type basic - select this method 1627413f72f0SBarry Smith 1628413f72f0SBarry Smith Level: beginner 1629413f72f0SBarry Smith 1630413f72f0SBarry Smith .seealso: ISLocalToGlobalMappingCreate(), ISLocalToGlobalMappingSetType(), ISLOCALTOGLOBALMAPPINGHASH 1631413f72f0SBarry Smith M*/ 1632413f72f0SBarry Smith PETSC_EXTERN PetscErrorCode ISLocalToGlobalMappingCreate_Basic(ISLocalToGlobalMapping ltog) 1633413f72f0SBarry Smith { 1634413f72f0SBarry Smith PetscFunctionBegin; 1635413f72f0SBarry Smith ltog->ops->globaltolocalmappingapply = ISGlobalToLocalMappingApply_Basic; 1636413f72f0SBarry Smith ltog->ops->globaltolocalmappingsetup = ISGlobalToLocalMappingSetUp_Basic; 1637413f72f0SBarry Smith ltog->ops->globaltolocalmappingapplyblock = ISGlobalToLocalMappingApplyBlock_Basic; 1638413f72f0SBarry Smith ltog->ops->destroy = ISLocalToGlobalMappingDestroy_Basic; 1639413f72f0SBarry Smith PetscFunctionReturn(0); 1640413f72f0SBarry Smith } 1641413f72f0SBarry Smith 1642413f72f0SBarry Smith /*MC 1643413f72f0SBarry Smith ISLOCALTOGLOBALMAPPINGHASH - hash implementation of the ISLocalToGlobalMapping object. When ISGlobalToLocalMappingApply() is 1644ed56e8eaSBarry Smith used this is good for large memory problems. 1645413f72f0SBarry Smith 1646413f72f0SBarry Smith Options Database Keys: 1647413f72f0SBarry Smith + -islocaltoglobalmapping_type hash - select this method 1648413f72f0SBarry Smith 1649ed56e8eaSBarry Smith 1650ed56e8eaSBarry Smith Notes: This is selected automatically for large problems if the user does not set the type. 1651ed56e8eaSBarry Smith 1652413f72f0SBarry Smith Level: beginner 1653413f72f0SBarry Smith 1654413f72f0SBarry Smith .seealso: ISLocalToGlobalMappingCreate(), ISLocalToGlobalMappingSetType(), ISLOCALTOGLOBALMAPPINGHASH 1655413f72f0SBarry Smith M*/ 1656413f72f0SBarry Smith PETSC_EXTERN PetscErrorCode ISLocalToGlobalMappingCreate_Hash(ISLocalToGlobalMapping ltog) 1657413f72f0SBarry Smith { 1658413f72f0SBarry Smith PetscFunctionBegin; 1659413f72f0SBarry Smith ltog->ops->globaltolocalmappingapply = ISGlobalToLocalMappingApply_Hash; 1660413f72f0SBarry Smith ltog->ops->globaltolocalmappingsetup = ISGlobalToLocalMappingSetUp_Hash; 1661413f72f0SBarry Smith ltog->ops->globaltolocalmappingapplyblock = ISGlobalToLocalMappingApplyBlock_Hash; 1662413f72f0SBarry Smith ltog->ops->destroy = ISLocalToGlobalMappingDestroy_Hash; 1663413f72f0SBarry Smith PetscFunctionReturn(0); 1664413f72f0SBarry Smith } 1665413f72f0SBarry Smith 1666413f72f0SBarry Smith 1667413f72f0SBarry Smith /*@C 1668413f72f0SBarry Smith ISLocalToGlobalMappingRegister - Adds a method for applying a global to local mapping with an ISLocalToGlobalMapping 1669413f72f0SBarry Smith 1670413f72f0SBarry Smith Not Collective 1671413f72f0SBarry Smith 1672413f72f0SBarry Smith Input Parameters: 1673413f72f0SBarry Smith + sname - name of a new method 1674413f72f0SBarry Smith - routine_create - routine to create method context 1675413f72f0SBarry Smith 1676413f72f0SBarry Smith Notes: 1677ed56e8eaSBarry Smith ISLocalToGlobalMappingRegister() may be called multiple times to add several user-defined mappings. 1678413f72f0SBarry Smith 1679413f72f0SBarry Smith Sample usage: 1680413f72f0SBarry Smith .vb 1681413f72f0SBarry Smith ISLocalToGlobalMappingRegister("my_mapper",MyCreate); 1682413f72f0SBarry Smith .ve 1683413f72f0SBarry Smith 1684ed56e8eaSBarry Smith Then, your mapping can be chosen with the procedural interface via 1685413f72f0SBarry Smith $ ISLocalToGlobalMappingSetType(ltog,"my_mapper") 1686413f72f0SBarry Smith or at runtime via the option 1687ed56e8eaSBarry Smith $ -islocaltoglobalmapping_type my_mapper 1688413f72f0SBarry Smith 1689413f72f0SBarry Smith Level: advanced 1690413f72f0SBarry Smith 1691413f72f0SBarry Smith .keywords: ISLocalToGlobalMappingType, register 1692413f72f0SBarry Smith 1693413f72f0SBarry Smith .seealso: ISLocalToGlobalMappingRegisterAll(), ISLocalToGlobalMappingRegisterDestroy(), ISLOCALTOGLOBALMAPPINGBASIC, ISLOCALTOGLOBALMAPPINGHASH 1694413f72f0SBarry Smith 1695413f72f0SBarry Smith @*/ 1696413f72f0SBarry Smith PetscErrorCode ISLocalToGlobalMappingRegister(const char sname[],PetscErrorCode (*function)(ISLocalToGlobalMapping)) 1697413f72f0SBarry Smith { 1698413f72f0SBarry Smith PetscErrorCode ierr; 1699413f72f0SBarry Smith 1700413f72f0SBarry Smith PetscFunctionBegin; 1701413f72f0SBarry Smith ierr = PetscFunctionListAdd(&ISLocalToGlobalMappingList,sname,function);CHKERRQ(ierr); 1702413f72f0SBarry Smith PetscFunctionReturn(0); 1703413f72f0SBarry Smith } 1704413f72f0SBarry Smith 1705413f72f0SBarry Smith /*@C 1706ed56e8eaSBarry Smith ISLocalToGlobalMappingSetType - Builds ISLocalToGlobalMapping for a particular global to local mapping approach. 1707413f72f0SBarry Smith 1708413f72f0SBarry Smith Logically Collective on ISLocalToGlobalMapping 1709413f72f0SBarry Smith 1710413f72f0SBarry Smith Input Parameters: 1711413f72f0SBarry Smith + ltog - the ISLocalToGlobalMapping object 1712413f72f0SBarry Smith - type - a known method 1713413f72f0SBarry Smith 1714413f72f0SBarry Smith Options Database Key: 1715ed56e8eaSBarry Smith . -islocaltoglobalmapping_type <method> - Sets the method; use -help for a list 1716413f72f0SBarry Smith of available methods (for instance, basic or hash) 1717413f72f0SBarry Smith 1718413f72f0SBarry Smith Notes: 1719413f72f0SBarry Smith See "petsc/include/petscis.h" for available methods 1720413f72f0SBarry Smith 1721413f72f0SBarry Smith Normally, it is best to use the ISLocalToGlobalMappingSetFromOptions() command and 1722413f72f0SBarry Smith then set the ISLocalToGlobalMapping type from the options database rather than by using 1723413f72f0SBarry Smith this routine. 1724413f72f0SBarry Smith 1725413f72f0SBarry Smith Level: intermediate 1726413f72f0SBarry Smith 1727413f72f0SBarry Smith Developer Note: ISLocalToGlobalMappingRegister() is used to add new types to ISLocalToGlobalMappingList from which they 1728413f72f0SBarry Smith are accessed by ISLocalToGlobalMappingSetType(). 1729413f72f0SBarry Smith 1730413f72f0SBarry Smith .keywords: ISLocalToGlobalMapping, set, method 1731413f72f0SBarry Smith 1732413f72f0SBarry Smith .seealso: PCSetType(), ISLocalToGlobalMappingType, ISLocalToGlobalMappingRegister(), ISLocalToGlobalMappingCreate() 1733413f72f0SBarry Smith 1734413f72f0SBarry Smith @*/ 1735413f72f0SBarry Smith PetscErrorCode ISLocalToGlobalMappingSetType(ISLocalToGlobalMapping ltog, ISLocalToGlobalMappingType type) 1736413f72f0SBarry Smith { 1737413f72f0SBarry Smith PetscErrorCode ierr,(*r)(ISLocalToGlobalMapping); 1738413f72f0SBarry Smith PetscBool match; 1739413f72f0SBarry Smith 1740413f72f0SBarry Smith PetscFunctionBegin; 1741413f72f0SBarry Smith PetscValidHeaderSpecific(ltog,IS_LTOGM_CLASSID,1); 1742413f72f0SBarry Smith PetscValidCharPointer(type,2); 1743413f72f0SBarry Smith 1744413f72f0SBarry Smith ierr = PetscObjectTypeCompare((PetscObject)ltog,type,&match);CHKERRQ(ierr); 1745413f72f0SBarry Smith if (match) PetscFunctionReturn(0); 1746413f72f0SBarry Smith 1747413f72f0SBarry Smith ierr = PetscFunctionListFind(ISLocalToGlobalMappingList,type,&r);CHKERRQ(ierr); 1748413f72f0SBarry Smith if (!r) SETERRQ1(PetscObjectComm((PetscObject)ltog),PETSC_ERR_ARG_UNKNOWN_TYPE,"Unable to find requested ISLocalToGlobalMapping type %s",type); 1749413f72f0SBarry Smith /* Destroy the previous private LTOG context */ 1750413f72f0SBarry Smith if (ltog->ops->destroy) { 1751413f72f0SBarry Smith ierr = (*ltog->ops->destroy)(ltog);CHKERRQ(ierr); 1752413f72f0SBarry Smith ltog->ops->destroy = NULL; 1753413f72f0SBarry Smith } 1754413f72f0SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)ltog,type);CHKERRQ(ierr); 1755413f72f0SBarry Smith ierr = (*r)(ltog);CHKERRQ(ierr); 1756413f72f0SBarry Smith PetscFunctionReturn(0); 1757413f72f0SBarry Smith } 1758413f72f0SBarry Smith 1759413f72f0SBarry Smith PetscBool ISLocalToGlobalMappingRegisterAllCalled = PETSC_FALSE; 1760413f72f0SBarry Smith 1761413f72f0SBarry Smith /*@C 1762413f72f0SBarry Smith ISLocalToGlobalMappingRegisterAll - Registers all of the local to global mapping components in the IS package. 1763413f72f0SBarry Smith 1764413f72f0SBarry Smith Not Collective 1765413f72f0SBarry Smith 1766413f72f0SBarry Smith Level: advanced 1767413f72f0SBarry Smith 1768413f72f0SBarry Smith .keywords: IS, register, all 1769413f72f0SBarry Smith .seealso: ISRegister(), ISLocalToGlobalRegister() 1770413f72f0SBarry Smith @*/ 1771413f72f0SBarry Smith PetscErrorCode ISLocalToGlobalMappingRegisterAll(void) 1772413f72f0SBarry Smith { 1773413f72f0SBarry Smith PetscErrorCode ierr; 1774413f72f0SBarry Smith 1775413f72f0SBarry Smith PetscFunctionBegin; 1776413f72f0SBarry Smith if (ISLocalToGlobalMappingRegisterAllCalled) PetscFunctionReturn(0); 1777413f72f0SBarry Smith ISLocalToGlobalMappingRegisterAllCalled = PETSC_TRUE; 1778413f72f0SBarry Smith 1779413f72f0SBarry Smith ierr = ISLocalToGlobalMappingRegister(ISLOCALTOGLOBALMAPPINGBASIC, ISLocalToGlobalMappingCreate_Basic);CHKERRQ(ierr); 1780413f72f0SBarry Smith ierr = ISLocalToGlobalMappingRegister(ISLOCALTOGLOBALMAPPINGHASH, ISLocalToGlobalMappingCreate_Hash);CHKERRQ(ierr); 1781413f72f0SBarry Smith PetscFunctionReturn(0); 1782413f72f0SBarry Smith } 178304a59952SBarry Smith 1784