10c735eedSKris Buschelman #define PETSCVEC_DLL 22362add9SBarry Smith 3e1fa1e0fSSatish Balay #include "petscvec.h" /*I "petscsys.h" I*/ 412d94eddSLisandro Dalcin #include "include/private/isimpl.h" /*I "petscis.h" I*/ 52362add9SBarry Smith 6ad48de64SLisandro Dalcin PetscCookie PETSCVEC_DLLEXPORT IS_LTOGM_COOKIE = 0; 78e58c17dSMatthew Knepley 84a2ae208SSatish Balay #undef __FUNCT__ 94a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingGetSize" 103b9aefa3SBarry Smith /*@C 113b9aefa3SBarry Smith ISLocalToGlobalMappingGetSize - Gets the local size of a local to global mapping. 123b9aefa3SBarry Smith 133b9aefa3SBarry Smith Not Collective 143b9aefa3SBarry Smith 153b9aefa3SBarry Smith Input Parameter: 163b9aefa3SBarry Smith . ltog - local to global mapping 173b9aefa3SBarry Smith 183b9aefa3SBarry Smith Output Parameter: 193b9aefa3SBarry Smith . n - the number of entries in the local mapping 203b9aefa3SBarry Smith 213b9aefa3SBarry Smith Level: advanced 223b9aefa3SBarry Smith 23273d9f13SBarry Smith Concepts: mapping^local to global 243b9aefa3SBarry Smith 253b9aefa3SBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreate() 263b9aefa3SBarry Smith @*/ 270c735eedSKris Buschelman PetscErrorCode PETSCVEC_DLLEXPORT ISLocalToGlobalMappingGetSize(ISLocalToGlobalMapping mapping,PetscInt *n) 283b9aefa3SBarry Smith { 293b9aefa3SBarry Smith PetscFunctionBegin; 304482741eSBarry Smith PetscValidHeaderSpecific(mapping,IS_LTOGM_COOKIE,1); 314482741eSBarry Smith PetscValidIntPointer(n,2); 323b9aefa3SBarry Smith *n = mapping->n; 333b9aefa3SBarry Smith PetscFunctionReturn(0); 343b9aefa3SBarry Smith } 353b9aefa3SBarry Smith 364a2ae208SSatish Balay #undef __FUNCT__ 374a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingView" 385a5d4f66SBarry Smith /*@C 395a5d4f66SBarry Smith ISLocalToGlobalMappingView - View a local to global mapping 405a5d4f66SBarry Smith 41b9cd556bSLois Curfman McInnes Not Collective 42b9cd556bSLois Curfman McInnes 435a5d4f66SBarry Smith Input Parameters: 443b9aefa3SBarry Smith + ltog - local to global mapping 453b9aefa3SBarry Smith - viewer - viewer 465a5d4f66SBarry Smith 47a997ad1aSLois Curfman McInnes Level: advanced 48a997ad1aSLois Curfman McInnes 49273d9f13SBarry Smith Concepts: mapping^local to global 505a5d4f66SBarry Smith 515a5d4f66SBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreate() 525a5d4f66SBarry Smith @*/ 530c735eedSKris Buschelman PetscErrorCode PETSCVEC_DLLEXPORT ISLocalToGlobalMappingView(ISLocalToGlobalMapping mapping,PetscViewer viewer) 545a5d4f66SBarry Smith { 5532dcc486SBarry Smith PetscInt i; 5632dcc486SBarry Smith PetscMPIInt rank; 5732077d6dSBarry Smith PetscTruth iascii; 586849ba73SBarry Smith PetscErrorCode ierr; 595a5d4f66SBarry Smith 605a5d4f66SBarry Smith PetscFunctionBegin; 614482741eSBarry Smith PetscValidHeaderSpecific(mapping,IS_LTOGM_COOKIE,1); 623050cee2SBarry Smith if (!viewer) { 637adad957SLisandro Dalcin ierr = PetscViewerASCIIGetStdout(((PetscObject)mapping)->comm,&viewer);CHKERRQ(ierr); 643050cee2SBarry Smith } 654482741eSBarry Smith PetscValidHeaderSpecific(viewer,PETSC_VIEWER_COOKIE,2); 665a5d4f66SBarry Smith 677adad957SLisandro Dalcin ierr = MPI_Comm_rank(((PetscObject)mapping)->comm,&rank);CHKERRQ(ierr); 6832077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 6932077d6dSBarry Smith if (iascii) { 705a5d4f66SBarry Smith for (i=0; i<mapping->n; i++) { 71b0a32e0cSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] %d %d\n",rank,i,mapping->indices[i]);CHKERRQ(ierr); 726831982aSBarry Smith } 73b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 746831982aSBarry Smith } else { 75958c9bccSBarry Smith SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported for ISLocalToGlobalMapping",((PetscObject)viewer)->type_name); 765a5d4f66SBarry Smith } 775a5d4f66SBarry Smith 785a5d4f66SBarry Smith PetscFunctionReturn(0); 795a5d4f66SBarry Smith } 805a5d4f66SBarry Smith 814a2ae208SSatish Balay #undef __FUNCT__ 824a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingCreateIS" 831f428162SBarry Smith /*@ 842bdab257SBarry Smith ISLocalToGlobalMappingCreateIS - Creates a mapping between a local (0 to n) 852bdab257SBarry Smith ordering and a global parallel ordering. 862bdab257SBarry Smith 870f5bd95cSBarry Smith Not collective 88b9cd556bSLois Curfman McInnes 89a997ad1aSLois Curfman McInnes Input Parameter: 902bdab257SBarry Smith . is - index set containing the global numbers for each local 912bdab257SBarry Smith 92a997ad1aSLois Curfman McInnes Output Parameter: 932bdab257SBarry Smith . mapping - new mapping data structure 942bdab257SBarry Smith 95a997ad1aSLois Curfman McInnes Level: advanced 96a997ad1aSLois Curfman McInnes 97273d9f13SBarry Smith Concepts: mapping^local to global 982bdab257SBarry Smith 992bdab257SBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreate() 1002bdab257SBarry Smith @*/ 1010c735eedSKris Buschelman PetscErrorCode PETSCVEC_DLLEXPORT ISLocalToGlobalMappingCreateIS(IS is,ISLocalToGlobalMapping *mapping) 1022bdab257SBarry Smith { 1036849ba73SBarry Smith PetscErrorCode ierr; 10432dcc486SBarry Smith PetscInt n,*indices; 1052bdab257SBarry Smith MPI_Comm comm; 1063a40ed3dSBarry Smith 1073a40ed3dSBarry Smith PetscFunctionBegin; 1084482741eSBarry Smith PetscValidHeaderSpecific(is,IS_COOKIE,1); 1094482741eSBarry Smith PetscValidPointer(mapping,2); 1102bdab257SBarry Smith 1112bdab257SBarry Smith ierr = PetscObjectGetComm((PetscObject)is,&comm);CHKERRQ(ierr); 1123b9aefa3SBarry Smith ierr = ISGetLocalSize(is,&n);CHKERRQ(ierr); 1132bdab257SBarry Smith ierr = ISGetIndices(is,&indices);CHKERRQ(ierr); 1142bdab257SBarry Smith ierr = ISLocalToGlobalMappingCreate(comm,n,indices,mapping);CHKERRQ(ierr); 1152bdab257SBarry Smith ierr = ISRestoreIndices(is,&indices);CHKERRQ(ierr); 1162bdab257SBarry Smith 1173a40ed3dSBarry Smith PetscFunctionReturn(0); 1182bdab257SBarry Smith } 1195a5d4f66SBarry Smith 120b46b645bSBarry Smith 1214a2ae208SSatish Balay #undef __FUNCT__ 1224a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingCreate" 123ba5bb76aSSatish Balay /*@ 12490f02eecSBarry Smith ISLocalToGlobalMappingCreate - Creates a mapping between a local (0 to n) 12590f02eecSBarry Smith ordering and a global parallel ordering. 1262362add9SBarry Smith 12789d82c54SBarry Smith Not Collective, but communicator may have more than one process 128b9cd556bSLois Curfman McInnes 1292362add9SBarry Smith Input Parameters: 13089d82c54SBarry Smith + comm - MPI communicator 13190f02eecSBarry Smith . n - the number of local elements 132b9cd556bSLois Curfman McInnes - indices - the global index for each local element 1332362add9SBarry Smith 134a997ad1aSLois Curfman McInnes Output Parameter: 13590f02eecSBarry Smith . mapping - new mapping data structure 1362362add9SBarry Smith 137a997ad1aSLois Curfman McInnes Level: advanced 138a997ad1aSLois Curfman McInnes 139273d9f13SBarry Smith Concepts: mapping^local to global 1402362add9SBarry Smith 141b46b645bSBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreateIS(), ISLocalToGlobalMappingCreateNC() 1422362add9SBarry Smith @*/ 1430c735eedSKris Buschelman PetscErrorCode PETSCVEC_DLLEXPORT ISLocalToGlobalMappingCreate(MPI_Comm cm,PetscInt n,const PetscInt indices[],ISLocalToGlobalMapping *mapping) 1442362add9SBarry Smith { 1456849ba73SBarry Smith PetscErrorCode ierr; 14632dcc486SBarry Smith PetscInt *in; 147b46b645bSBarry Smith 148b46b645bSBarry Smith PetscFunctionBegin; 14973911063SBarry Smith if (n) PetscValidIntPointer(indices,3); 1504482741eSBarry Smith PetscValidPointer(mapping,4); 1517c334f02SBarry Smith ierr = PetscMalloc(n*sizeof(PetscInt),&in);CHKERRQ(ierr); 15232dcc486SBarry Smith ierr = PetscMemcpy(in,indices,n*sizeof(PetscInt));CHKERRQ(ierr); 153b46b645bSBarry Smith ierr = ISLocalToGlobalMappingCreateNC(cm,n,in,mapping);CHKERRQ(ierr); 154b46b645bSBarry Smith PetscFunctionReturn(0); 155b46b645bSBarry Smith } 156b46b645bSBarry Smith 157b46b645bSBarry Smith #undef __FUNCT__ 158b46b645bSBarry Smith #define __FUNCT__ "ISLocalToGlobalMappingCreateNC" 159b46b645bSBarry Smith /*@C 160b46b645bSBarry Smith ISLocalToGlobalMappingCreateNC - Creates a mapping between a local (0 to n) 161b46b645bSBarry Smith ordering and a global parallel ordering. 162b46b645bSBarry Smith 163b46b645bSBarry Smith Not Collective, but communicator may have more than one process 164b46b645bSBarry Smith 165b46b645bSBarry Smith Input Parameters: 166b46b645bSBarry Smith + comm - MPI communicator 167b46b645bSBarry Smith . n - the number of local elements 168b46b645bSBarry Smith - indices - the global index for each local element 169b46b645bSBarry Smith 170b46b645bSBarry Smith Output Parameter: 171b46b645bSBarry Smith . mapping - new mapping data structure 172b46b645bSBarry Smith 173b46b645bSBarry Smith Level: developer 174b46b645bSBarry Smith 175b46b645bSBarry Smith Notes: Does not copy the indices, just keeps the pointer to the indices. The ISLocalToGlobalMappingDestroy() 176b46b645bSBarry Smith will free the space so it must be obtained with PetscMalloc() and it must not be freed elsewhere. 177b46b645bSBarry Smith 178b46b645bSBarry Smith Concepts: mapping^local to global 179b46b645bSBarry Smith 180b46b645bSBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreateIS(), ISLocalToGlobalMappingCreate() 181b46b645bSBarry Smith @*/ 1820c735eedSKris Buschelman PetscErrorCode PETSCVEC_DLLEXPORT ISLocalToGlobalMappingCreateNC(MPI_Comm cm,PetscInt n,const PetscInt indices[],ISLocalToGlobalMapping *mapping) 183b46b645bSBarry Smith { 184dfbe8321SBarry Smith PetscErrorCode ierr; 18523f7533aSBarry Smith 1863a40ed3dSBarry Smith PetscFunctionBegin; 187ad48de64SLisandro Dalcin if (n) PetscValidIntPointer(indices,3); 1884482741eSBarry Smith PetscValidPointer(mapping,4); 1898e58c17dSMatthew Knepley *mapping = PETSC_NULL; 1908e58c17dSMatthew Knepley #ifndef PETSC_USE_DYNAMIC_LIBRARIES 191*2b6de112SBarry Smith ierr = ISInitializePackage(PETSC_NULL);CHKERRQ(ierr); 1928e58c17dSMatthew Knepley #endif 1932362add9SBarry Smith 19452e6d16bSBarry Smith ierr = PetscHeaderCreate(*mapping,_p_ISLocalToGlobalMapping,int,IS_LTOGM_COOKIE,0,"ISLocalToGlobalMapping", 19552e6d16bSBarry Smith cm,ISLocalToGlobalMappingDestroy,ISLocalToGlobalMappingView);CHKERRQ(ierr); 196d4bb536fSBarry Smith 197d4bb536fSBarry Smith (*mapping)->n = n; 19832dcc486SBarry Smith (*mapping)->indices = (PetscInt*)indices; 19938f2d2fdSLisandro Dalcin ierr = PetscLogObjectMemory(*mapping,n*sizeof(PetscInt));CHKERRQ(ierr); 200d4bb536fSBarry Smith 201d4bb536fSBarry Smith /* 202d4bb536fSBarry Smith Do not create the global to local mapping. This is only created if 203d4bb536fSBarry Smith ISGlobalToLocalMapping() is called 204d4bb536fSBarry Smith */ 205d4bb536fSBarry Smith (*mapping)->globals = 0; 2063a40ed3dSBarry Smith PetscFunctionReturn(0); 2072362add9SBarry Smith } 2082362add9SBarry Smith 2094a2ae208SSatish Balay #undef __FUNCT__ 2104a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingBlock" 211bce096a4SSatish Balay /*@ 212323b833fSBarry Smith ISLocalToGlobalMappingBlock - Creates a blocked index version of an 213323b833fSBarry Smith ISLocalToGlobalMapping that is appropriate for MatSetLocalToGlobalMappingBlock() 214323b833fSBarry Smith and VecSetLocalToGlobalMappingBlock(). 215323b833fSBarry Smith 216323b833fSBarry Smith Not Collective, but communicator may have more than one process 217323b833fSBarry Smith 218323b833fSBarry Smith Input Parameters: 219323b833fSBarry Smith + inmap - original point-wise mapping 220323b833fSBarry Smith - bs - block size 221323b833fSBarry Smith 222323b833fSBarry Smith Output Parameter: 22369eb54c3SBarry Smith . outmap - block based mapping; the indices are relative to BLOCKS, not individual vector or matrix entries. 224323b833fSBarry Smith 225323b833fSBarry Smith Level: advanced 226323b833fSBarry Smith 227323b833fSBarry Smith Concepts: mapping^local to global 228323b833fSBarry Smith 229323b833fSBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreate(), ISLocalToGlobalMappingCreateIS() 230323b833fSBarry Smith @*/ 2310c735eedSKris Buschelman PetscErrorCode PETSCVEC_DLLEXPORT ISLocalToGlobalMappingBlock(ISLocalToGlobalMapping inmap,PetscInt bs,ISLocalToGlobalMapping *outmap) 232323b833fSBarry Smith { 2336849ba73SBarry Smith PetscErrorCode ierr; 23432dcc486SBarry Smith PetscInt *ii,i,n; 235323b833fSBarry Smith 236323b833fSBarry Smith PetscFunctionBegin; 237ad48de64SLisandro Dalcin PetscValidHeaderSpecific(inmap,IS_LTOGM_COOKIE,1); 238ad48de64SLisandro Dalcin PetscValidPointer(outmap,1); 239323b833fSBarry Smith if (bs > 1) { 240323b833fSBarry Smith n = inmap->n/bs; 24112ce3465SBarry Smith if (n*bs != inmap->n) SETERRQ(PETSC_ERR_ARG_INCOMP,"Pointwise mapping length is not divisible by block size"); 24232dcc486SBarry Smith ierr = PetscMalloc(n*sizeof(PetscInt),&ii);CHKERRQ(ierr); 243323b833fSBarry Smith for (i=0; i<n; i++) { 244db032c9dSBarry Smith ii[i] = inmap->indices[bs*i]/bs; 245323b833fSBarry Smith } 2467adad957SLisandro Dalcin ierr = ISLocalToGlobalMappingCreate(((PetscObject)inmap)->comm,n,ii,outmap);CHKERRQ(ierr); 247323b833fSBarry Smith ierr = PetscFree(ii);CHKERRQ(ierr); 248323b833fSBarry Smith } else { 249323b833fSBarry Smith ierr = PetscObjectReference((PetscObject)inmap);CHKERRQ(ierr); 250c3122656SLisandro Dalcin *outmap = inmap; 251323b833fSBarry Smith } 252323b833fSBarry Smith PetscFunctionReturn(0); 253323b833fSBarry Smith } 254323b833fSBarry Smith 2554a2ae208SSatish Balay #undef __FUNCT__ 2564a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingDestroy" 25790f02eecSBarry Smith /*@ 25890f02eecSBarry Smith ISLocalToGlobalMappingDestroy - Destroys a mapping between a local (0 to n) 25990f02eecSBarry Smith ordering and a global parallel ordering. 26090f02eecSBarry Smith 2610f5bd95cSBarry Smith Note Collective 262b9cd556bSLois Curfman McInnes 26390f02eecSBarry Smith Input Parameters: 26490f02eecSBarry Smith . mapping - mapping data structure 26590f02eecSBarry Smith 266a997ad1aSLois Curfman McInnes Level: advanced 267a997ad1aSLois Curfman McInnes 2683acfe500SLois Curfman McInnes .seealso: ISLocalToGlobalMappingCreate() 26990f02eecSBarry Smith @*/ 2700c735eedSKris Buschelman PetscErrorCode PETSCVEC_DLLEXPORT ISLocalToGlobalMappingDestroy(ISLocalToGlobalMapping mapping) 27190f02eecSBarry Smith { 272dfbe8321SBarry Smith PetscErrorCode ierr; 2733a40ed3dSBarry Smith PetscFunctionBegin; 274ad48de64SLisandro Dalcin PetscValidHeaderSpecific(mapping,IS_LTOGM_COOKIE,1); 2757adad957SLisandro Dalcin if (--((PetscObject)mapping)->refct > 0) PetscFunctionReturn(0); 276606d414cSSatish Balay ierr = PetscFree(mapping->indices);CHKERRQ(ierr); 27705b42c5fSBarry Smith ierr = PetscFree(mapping->globals);CHKERRQ(ierr); 278d38fa0fbSBarry Smith ierr = PetscHeaderDestroy(mapping);CHKERRQ(ierr); 2793a40ed3dSBarry Smith PetscFunctionReturn(0); 28090f02eecSBarry Smith } 28190f02eecSBarry Smith 2824a2ae208SSatish Balay #undef __FUNCT__ 2834a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingApplyIS" 28490f02eecSBarry Smith /*@ 2853acfe500SLois Curfman McInnes ISLocalToGlobalMappingApplyIS - Creates from an IS in the local numbering 2863acfe500SLois Curfman McInnes a new index set using the global numbering defined in an ISLocalToGlobalMapping 2873acfe500SLois Curfman McInnes context. 28890f02eecSBarry Smith 289b9cd556bSLois Curfman McInnes Not collective 290b9cd556bSLois Curfman McInnes 29190f02eecSBarry Smith Input Parameters: 292b9cd556bSLois Curfman McInnes + mapping - mapping between local and global numbering 293b9cd556bSLois Curfman McInnes - is - index set in local numbering 29490f02eecSBarry Smith 29590f02eecSBarry Smith Output Parameters: 29690f02eecSBarry Smith . newis - index set in global numbering 29790f02eecSBarry Smith 298a997ad1aSLois Curfman McInnes Level: advanced 299a997ad1aSLois Curfman McInnes 300273d9f13SBarry Smith Concepts: mapping^local to global 3013acfe500SLois Curfman McInnes 30290f02eecSBarry Smith .seealso: ISLocalToGlobalMappingApply(), ISLocalToGlobalMappingCreate(), 303d4bb536fSBarry Smith ISLocalToGlobalMappingDestroy(), ISGlobalToLocalMappingApply() 30490f02eecSBarry Smith @*/ 3050c735eedSKris Buschelman PetscErrorCode PETSCVEC_DLLEXPORT ISLocalToGlobalMappingApplyIS(ISLocalToGlobalMapping mapping,IS is,IS *newis) 30690f02eecSBarry Smith { 3076849ba73SBarry Smith PetscErrorCode ierr; 30832dcc486SBarry Smith PetscInt n,i,*idxin,*idxmap,*idxout,Nmax = mapping->n; 3093a40ed3dSBarry Smith 3103a40ed3dSBarry Smith PetscFunctionBegin; 311ad48de64SLisandro Dalcin PetscValidHeaderSpecific(mapping,IS_LTOGM_COOKIE,1); 3124482741eSBarry Smith PetscValidHeaderSpecific(is,IS_COOKIE,2); 3134482741eSBarry Smith PetscValidPointer(newis,3); 31490f02eecSBarry Smith 3153b9aefa3SBarry Smith ierr = ISGetLocalSize(is,&n);CHKERRQ(ierr); 31690f02eecSBarry Smith ierr = ISGetIndices(is,&idxin);CHKERRQ(ierr); 31790f02eecSBarry Smith idxmap = mapping->indices; 31890f02eecSBarry Smith 3197c334f02SBarry Smith ierr = PetscMalloc(n*sizeof(PetscInt),&idxout);CHKERRQ(ierr); 32090f02eecSBarry Smith for (i=0; i<n; i++) { 321590ac198SBarry Smith if (idxin[i] >= Nmax) SETERRQ3(PETSC_ERR_ARG_OUTOFRANGE,"Local index %d too large %d (max) at %d",idxin[i],Nmax-1,i); 32290f02eecSBarry Smith idxout[i] = idxmap[idxin[i]]; 32390f02eecSBarry Smith } 3243b9aefa3SBarry Smith ierr = ISRestoreIndices(is,&idxin);CHKERRQ(ierr); 325f7a1537bSLisandro Dalcin ierr = ISCreateGeneralNC(PETSC_COMM_SELF,n,idxout,newis);CHKERRQ(ierr); 3263a40ed3dSBarry Smith PetscFunctionReturn(0); 32790f02eecSBarry Smith } 32890f02eecSBarry Smith 32989d82c54SBarry Smith /*MC 3303acfe500SLois Curfman McInnes ISLocalToGlobalMappingApply - Takes a list of integers in a local numbering 3313acfe500SLois Curfman McInnes and converts them to the global numbering. 33290f02eecSBarry Smith 333b9cd556bSLois Curfman McInnes Not collective 334b9cd556bSLois Curfman McInnes 335bb25748dSBarry Smith Input Parameters: 336b9cd556bSLois Curfman McInnes + mapping - the local to global mapping context 337bb25748dSBarry Smith . N - number of integers 338b9cd556bSLois Curfman McInnes - in - input indices in local numbering 339bb25748dSBarry Smith 340bb25748dSBarry Smith Output Parameter: 341bb25748dSBarry Smith . out - indices in global numbering 342bb25748dSBarry Smith 3433b9aefa3SBarry Smith Synopsis: 344d360dc6fSBarry Smith PetscErrorCode ISLocalToGlobalMappingApply(ISLocalToGlobalMapping mapping,int N,int in[],int out[]) 3453b9aefa3SBarry Smith 346b9cd556bSLois Curfman McInnes Notes: 347b9cd556bSLois Curfman McInnes The in and out array parameters may be identical. 348d4bb536fSBarry Smith 349a997ad1aSLois Curfman McInnes Level: advanced 350a997ad1aSLois Curfman McInnes 351bb25748dSBarry Smith .seealso: ISLocalToGlobalMappingCreate(),ISLocalToGlobalMappingDestroy(), 3520752156aSBarry Smith ISLocalToGlobalMappingApplyIS(),AOCreateBasic(),AOApplicationToPetsc(), 353d4bb536fSBarry Smith AOPetscToApplication(), ISGlobalToLocalMappingApply() 354bb25748dSBarry Smith 355273d9f13SBarry Smith Concepts: mapping^local to global 356d4bb536fSBarry Smith 35789d82c54SBarry Smith M*/ 358d4bb536fSBarry Smith 359d4bb536fSBarry Smith /* -----------------------------------------------------------------------------------------*/ 360d4bb536fSBarry Smith 3614a2ae208SSatish Balay #undef __FUNCT__ 3624a2ae208SSatish Balay #define __FUNCT__ "ISGlobalToLocalMappingSetUp_Private" 363d4bb536fSBarry Smith /* 364d4bb536fSBarry Smith Creates the global fields in the ISLocalToGlobalMapping structure 365d4bb536fSBarry Smith */ 3666849ba73SBarry Smith static PetscErrorCode ISGlobalToLocalMappingSetUp_Private(ISLocalToGlobalMapping mapping) 367d4bb536fSBarry Smith { 3686849ba73SBarry Smith PetscErrorCode ierr; 36932dcc486SBarry Smith PetscInt i,*idx = mapping->indices,n = mapping->n,end,start,*globals; 370d4bb536fSBarry Smith 3713a40ed3dSBarry Smith PetscFunctionBegin; 372d4bb536fSBarry Smith end = 0; 373d4bb536fSBarry Smith start = 100000000; 374d4bb536fSBarry Smith 375d4bb536fSBarry Smith for (i=0; i<n; i++) { 376d4bb536fSBarry Smith if (idx[i] < 0) continue; 377d4bb536fSBarry Smith if (idx[i] < start) start = idx[i]; 378d4bb536fSBarry Smith if (idx[i] > end) end = idx[i]; 379d4bb536fSBarry Smith } 380d4bb536fSBarry Smith if (start > end) {start = 0; end = -1;} 381d4bb536fSBarry Smith mapping->globalstart = start; 382d4bb536fSBarry Smith mapping->globalend = end; 383d4bb536fSBarry Smith 38432dcc486SBarry Smith ierr = PetscMalloc((end-start+2)*sizeof(PetscInt),&globals);CHKERRQ(ierr); 385b0a32e0cSBarry Smith mapping->globals = globals; 386d4bb536fSBarry Smith for (i=0; i<end-start+1; i++) { 387d4bb536fSBarry Smith globals[i] = -1; 388d4bb536fSBarry Smith } 389d4bb536fSBarry Smith for (i=0; i<n; i++) { 390d4bb536fSBarry Smith if (idx[i] < 0) continue; 391d4bb536fSBarry Smith globals[idx[i] - start] = i; 392d4bb536fSBarry Smith } 393d4bb536fSBarry Smith 39452e6d16bSBarry Smith ierr = PetscLogObjectMemory(mapping,(end-start+1)*sizeof(PetscInt));CHKERRQ(ierr); 3953a40ed3dSBarry Smith PetscFunctionReturn(0); 396d4bb536fSBarry Smith } 397d4bb536fSBarry Smith 3984a2ae208SSatish Balay #undef __FUNCT__ 3994a2ae208SSatish Balay #define __FUNCT__ "ISGlobalToLocalMappingApply" 400d4bb536fSBarry Smith /*@ 401a997ad1aSLois Curfman McInnes ISGlobalToLocalMappingApply - Provides the local numbering for a list of integers 402a997ad1aSLois Curfman McInnes specified with a global numbering. 403d4bb536fSBarry Smith 404b9cd556bSLois Curfman McInnes Not collective 405b9cd556bSLois Curfman McInnes 406d4bb536fSBarry Smith Input Parameters: 407b9cd556bSLois Curfman McInnes + mapping - mapping between local and global numbering 408d4bb536fSBarry Smith . type - IS_GTOLM_MASK - replaces global indices with no local value with -1 409d4bb536fSBarry Smith IS_GTOLM_DROP - drops the indices with no local value from the output list 410d4bb536fSBarry Smith . n - number of global indices to map 411b9cd556bSLois Curfman McInnes - idx - global indices to map 412d4bb536fSBarry Smith 413d4bb536fSBarry Smith Output Parameters: 414b9cd556bSLois Curfman McInnes + nout - number of indices in output array (if type == IS_GTOLM_MASK then nout = n) 415b9cd556bSLois Curfman McInnes - idxout - local index of each global index, one must pass in an array long enough 416e182c471SBarry Smith to hold all the indices. You can call ISGlobalToLocalMappingApply() with 417e182c471SBarry Smith idxout == PETSC_NULL to determine the required length (returned in nout) 418e182c471SBarry Smith and then allocate the required space and call ISGlobalToLocalMappingApply() 419e182c471SBarry Smith a second time to set the values. 420d4bb536fSBarry Smith 421b9cd556bSLois Curfman McInnes Notes: 422b9cd556bSLois Curfman McInnes Either nout or idxout may be PETSC_NULL. idx and idxout may be identical. 423d4bb536fSBarry Smith 4240f5bd95cSBarry Smith This is not scalable in memory usage. Each processor requires O(Nglobal) size 4250f5bd95cSBarry Smith array to compute these. 4260f5bd95cSBarry Smith 427a997ad1aSLois Curfman McInnes Level: advanced 428a997ad1aSLois Curfman McInnes 429273d9f13SBarry Smith Concepts: mapping^global to local 430d4bb536fSBarry Smith 431d4bb536fSBarry Smith .seealso: ISLocalToGlobalMappingApply(), ISLocalToGlobalMappingCreate(), 432d4bb536fSBarry Smith ISLocalToGlobalMappingDestroy() 433d4bb536fSBarry Smith @*/ 4340c735eedSKris Buschelman PetscErrorCode PETSCVEC_DLLEXPORT ISGlobalToLocalMappingApply(ISLocalToGlobalMapping mapping,ISGlobalToLocalMappingType type, 43532dcc486SBarry Smith PetscInt n,const PetscInt idx[],PetscInt *nout,PetscInt idxout[]) 436d4bb536fSBarry Smith { 43732dcc486SBarry Smith PetscInt i,*globals,nf = 0,tmp,start,end; 4386849ba73SBarry Smith PetscErrorCode ierr; 439d4bb536fSBarry Smith 4403a40ed3dSBarry Smith PetscFunctionBegin; 441ad48de64SLisandro Dalcin PetscValidHeaderSpecific(mapping,IS_LTOGM_COOKIE,1); 442d4bb536fSBarry Smith if (!mapping->globals) { 443d4bb536fSBarry Smith ierr = ISGlobalToLocalMappingSetUp_Private(mapping);CHKERRQ(ierr); 444d4bb536fSBarry Smith } 445d4bb536fSBarry Smith globals = mapping->globals; 446d4bb536fSBarry Smith start = mapping->globalstart; 447d4bb536fSBarry Smith end = mapping->globalend; 448d4bb536fSBarry Smith 449d4bb536fSBarry Smith if (type == IS_GTOLM_MASK) { 450d4bb536fSBarry Smith if (idxout) { 451d4bb536fSBarry Smith for (i=0; i<n; i++) { 452d4bb536fSBarry Smith if (idx[i] < 0) idxout[i] = idx[i]; 453d4bb536fSBarry Smith else if (idx[i] < start) idxout[i] = -1; 454d4bb536fSBarry Smith else if (idx[i] > end) idxout[i] = -1; 455d4bb536fSBarry Smith else idxout[i] = globals[idx[i] - start]; 456d4bb536fSBarry Smith } 457d4bb536fSBarry Smith } 458d4bb536fSBarry Smith if (nout) *nout = n; 459d4bb536fSBarry Smith } else { 460d4bb536fSBarry Smith if (idxout) { 461d4bb536fSBarry Smith for (i=0; i<n; i++) { 462d4bb536fSBarry Smith if (idx[i] < 0) continue; 463d4bb536fSBarry Smith if (idx[i] < start) continue; 464d4bb536fSBarry Smith if (idx[i] > end) continue; 465d4bb536fSBarry Smith tmp = globals[idx[i] - start]; 466d4bb536fSBarry Smith if (tmp < 0) continue; 467d4bb536fSBarry Smith idxout[nf++] = tmp; 468d4bb536fSBarry Smith } 469d4bb536fSBarry Smith } else { 470d4bb536fSBarry Smith for (i=0; i<n; i++) { 471d4bb536fSBarry Smith if (idx[i] < 0) continue; 472d4bb536fSBarry Smith if (idx[i] < start) continue; 473d4bb536fSBarry Smith if (idx[i] > end) continue; 474d4bb536fSBarry Smith tmp = globals[idx[i] - start]; 475d4bb536fSBarry Smith if (tmp < 0) continue; 476d4bb536fSBarry Smith nf++; 477d4bb536fSBarry Smith } 478d4bb536fSBarry Smith } 479d4bb536fSBarry Smith if (nout) *nout = nf; 480d4bb536fSBarry Smith } 481d4bb536fSBarry Smith 4823a40ed3dSBarry Smith PetscFunctionReturn(0); 483d4bb536fSBarry Smith } 48490f02eecSBarry Smith 4854a2ae208SSatish Balay #undef __FUNCT__ 4864a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingGetInfo" 48789d82c54SBarry Smith /*@C 48889d82c54SBarry Smith ISLocalToGlobalMappingGetInfo - Gets the neighbor information for each processor and 48989d82c54SBarry Smith each index shared by more than one processor 49089d82c54SBarry Smith 49189d82c54SBarry Smith Collective on ISLocalToGlobalMapping 49289d82c54SBarry Smith 49389d82c54SBarry Smith Input Parameters: 49489d82c54SBarry Smith . mapping - the mapping from local to global indexing 49589d82c54SBarry Smith 49689d82c54SBarry Smith Output Parameter: 49789d82c54SBarry Smith + nproc - number of processors that are connected to this one 49889d82c54SBarry Smith . proc - neighboring processors 49907b52d57SBarry Smith . numproc - number of indices for each subdomain (processor) 50007b52d57SBarry Smith - indices - indices of local nodes shared with neighbor (sorted by global numbering) 50189d82c54SBarry Smith 50289d82c54SBarry Smith Level: advanced 50389d82c54SBarry Smith 504273d9f13SBarry Smith Concepts: mapping^local to global 50589d82c54SBarry Smith 5062cfcea29SBarry Smith Fortran Usage: 5072cfcea29SBarry Smith $ ISLocalToGlobalMpngGetInfoSize(ISLocalToGlobalMapping,PetscInt nproc,PetscInt numprocmax,ierr) followed by 5082cfcea29SBarry Smith $ ISLocalToGlobalMappingGetInfo(ISLocalToGlobalMapping,PetscInt nproc, PetscInt procs[nproc],PetscInt numprocs[nproc], 5092cfcea29SBarry Smith PetscInt indices[nproc][numprocmax],ierr) 5102cfcea29SBarry Smith There is no ISLocalToGlobalMappingRestoreInfo() in Fortran. You must make sure that procs[], numprocs[] and 5112cfcea29SBarry Smith indices[][] are large enough arrays, either by allocating them dynamically or defining static ones large enough. 5122cfcea29SBarry Smith 5132cfcea29SBarry Smith 51407b52d57SBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreateIS(), ISLocalToGlobalMappingCreate(), 51507b52d57SBarry Smith ISLocalToGlobalMappingRestoreInfo() 51689d82c54SBarry Smith @*/ 5170c735eedSKris Buschelman PetscErrorCode PETSCVEC_DLLEXPORT ISLocalToGlobalMappingGetInfo(ISLocalToGlobalMapping mapping,PetscInt *nproc,PetscInt *procs[],PetscInt *numprocs[],PetscInt **indices[]) 51889d82c54SBarry Smith { 5196849ba73SBarry Smith PetscErrorCode ierr; 52097f1f81fSBarry Smith PetscMPIInt size,rank,tag1,tag2,tag3,*len,*source,imdex; 52132dcc486SBarry Smith PetscInt i,n = mapping->n,Ng,ng,max = 0,*lindices = mapping->indices; 52232dcc486SBarry Smith PetscInt *nprocs,*owner,nsends,*sends,j,*starts,nmax,nrecvs,*recvs,proc; 52397f1f81fSBarry Smith PetscInt cnt,scale,*ownedsenders,*nownedsenders,rstart,nowned; 52432dcc486SBarry Smith PetscInt node,nownedm,nt,*sends2,nsends2,*starts2,*lens2,*dest,nrecvs2,*starts3,*recvs2,k,*bprocs,*tmp; 52532dcc486SBarry Smith PetscInt first_procs,first_numprocs,*first_indices; 52689d82c54SBarry Smith MPI_Request *recv_waits,*send_waits; 52730dcb7c9SBarry Smith MPI_Status recv_status,*send_status,*recv_statuses; 5287adad957SLisandro Dalcin MPI_Comm comm = ((PetscObject)mapping)->comm; 52907b52d57SBarry Smith PetscTruth debug = PETSC_FALSE; 53089d82c54SBarry Smith 53189d82c54SBarry Smith PetscFunctionBegin; 532ad48de64SLisandro Dalcin PetscValidHeaderSpecific(mapping,IS_LTOGM_COOKIE,1); 53324cf384cSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 53424cf384cSBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 53524cf384cSBarry Smith if (size == 1) { 53624cf384cSBarry Smith *nproc = 0; 53724cf384cSBarry Smith *procs = PETSC_NULL; 53832dcc486SBarry Smith ierr = PetscMalloc(sizeof(PetscInt),numprocs);CHKERRQ(ierr); 5391e2105dcSBarry Smith (*numprocs)[0] = 0; 54032dcc486SBarry Smith ierr = PetscMalloc(sizeof(PetscInt*),indices);CHKERRQ(ierr); 5411e2105dcSBarry Smith (*indices)[0] = PETSC_NULL; 54224cf384cSBarry Smith PetscFunctionReturn(0); 54324cf384cSBarry Smith } 54424cf384cSBarry Smith 545b0a32e0cSBarry Smith ierr = PetscOptionsHasName(PETSC_NULL,"-islocaltoglobalmappinggetinfo_debug",&debug);CHKERRQ(ierr); 54607b52d57SBarry Smith 5473677ff5aSBarry Smith /* 5483677ff5aSBarry Smith Notes on ISLocalToGlobalMappingGetInfo 5493677ff5aSBarry Smith 5503677ff5aSBarry Smith globally owned node - the nodes that have been assigned to this processor in global 5513677ff5aSBarry Smith numbering, just for this routine. 5523677ff5aSBarry Smith 5533677ff5aSBarry Smith nontrivial globally owned node - node assigned to this processor that is on a subdomain 5543677ff5aSBarry Smith boundary (i.e. is has more than one local owner) 5553677ff5aSBarry Smith 5563677ff5aSBarry Smith locally owned node - node that exists on this processors subdomain 5573677ff5aSBarry Smith 5583677ff5aSBarry Smith nontrivial locally owned node - node that is not in the interior (i.e. has more than one 5593677ff5aSBarry Smith local subdomain 5603677ff5aSBarry Smith */ 56124cf384cSBarry Smith ierr = PetscObjectGetNewTag((PetscObject)mapping,&tag1);CHKERRQ(ierr); 56224cf384cSBarry Smith ierr = PetscObjectGetNewTag((PetscObject)mapping,&tag2);CHKERRQ(ierr); 56324cf384cSBarry Smith ierr = PetscObjectGetNewTag((PetscObject)mapping,&tag3);CHKERRQ(ierr); 56489d82c54SBarry Smith 56589d82c54SBarry Smith for (i=0; i<n; i++) { 56689d82c54SBarry Smith if (lindices[i] > max) max = lindices[i]; 56789d82c54SBarry Smith } 56832dcc486SBarry Smith ierr = MPI_Allreduce(&max,&Ng,1,MPIU_INT,MPI_MAX,comm);CHKERRQ(ierr); 56978058e43SBarry Smith Ng++; 57089d82c54SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 57189d82c54SBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 572bc8ff85bSBarry Smith scale = Ng/size + 1; 573a2e34c3dSBarry Smith ng = scale; if (rank == size-1) ng = Ng - scale*(size-1); ng = PetscMax(1,ng); 574caba0dd0SBarry Smith rstart = scale*rank; 57589d82c54SBarry Smith 57689d82c54SBarry Smith /* determine ownership ranges of global indices */ 5777c334f02SBarry Smith ierr = PetscMalloc(2*size*sizeof(PetscInt),&nprocs);CHKERRQ(ierr); 57832dcc486SBarry Smith ierr = PetscMemzero(nprocs,2*size*sizeof(PetscInt));CHKERRQ(ierr); 57989d82c54SBarry Smith 58089d82c54SBarry Smith /* determine owners of each local node */ 5817c334f02SBarry Smith ierr = PetscMalloc(n*sizeof(PetscInt),&owner);CHKERRQ(ierr); 58289d82c54SBarry Smith for (i=0; i<n; i++) { 5833677ff5aSBarry Smith proc = lindices[i]/scale; /* processor that globally owns this index */ 58427c402fcSBarry Smith nprocs[2*proc+1] = 1; /* processor globally owns at least one of ours */ 5853677ff5aSBarry Smith owner[i] = proc; 58627c402fcSBarry Smith nprocs[2*proc]++; /* count of how many that processor globally owns of ours */ 58789d82c54SBarry Smith } 58827c402fcSBarry Smith nsends = 0; for (i=0; i<size; i++) nsends += nprocs[2*i+1]; 5891e2582c4SBarry Smith ierr = PetscInfo1(mapping,"Number of global owners for my local data %d\n",nsends);CHKERRQ(ierr); 59089d82c54SBarry Smith 59189d82c54SBarry Smith /* inform other processors of number of messages and max length*/ 59227c402fcSBarry Smith ierr = PetscMaxSum(comm,nprocs,&nmax,&nrecvs);CHKERRQ(ierr); 5931e2582c4SBarry Smith ierr = PetscInfo1(mapping,"Number of local owners for my global data %d\n",nrecvs);CHKERRQ(ierr); 59489d82c54SBarry Smith 59589d82c54SBarry Smith /* post receives for owned rows */ 59632dcc486SBarry Smith ierr = PetscMalloc((2*nrecvs+1)*(nmax+1)*sizeof(PetscInt),&recvs);CHKERRQ(ierr); 597b0a32e0cSBarry Smith ierr = PetscMalloc((nrecvs+1)*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr); 59889d82c54SBarry Smith for (i=0; i<nrecvs; i++) { 59932dcc486SBarry Smith ierr = MPI_Irecv(recvs+2*nmax*i,2*nmax,MPIU_INT,MPI_ANY_SOURCE,tag1,comm,recv_waits+i);CHKERRQ(ierr); 60089d82c54SBarry Smith } 60189d82c54SBarry Smith 60289d82c54SBarry Smith /* pack messages containing lists of local nodes to owners */ 60332dcc486SBarry Smith ierr = PetscMalloc((2*n+1)*sizeof(PetscInt),&sends);CHKERRQ(ierr); 60432dcc486SBarry Smith ierr = PetscMalloc((size+1)*sizeof(PetscInt),&starts);CHKERRQ(ierr); 60589d82c54SBarry Smith starts[0] = 0; 60627c402fcSBarry Smith for (i=1; i<size; i++) { starts[i] = starts[i-1] + 2*nprocs[2*i-2];} 60789d82c54SBarry Smith for (i=0; i<n; i++) { 60889d82c54SBarry Smith sends[starts[owner[i]]++] = lindices[i]; 60930dcb7c9SBarry Smith sends[starts[owner[i]]++] = i; 61089d82c54SBarry Smith } 61189d82c54SBarry Smith ierr = PetscFree(owner);CHKERRQ(ierr); 61289d82c54SBarry Smith starts[0] = 0; 61327c402fcSBarry Smith for (i=1; i<size; i++) { starts[i] = starts[i-1] + 2*nprocs[2*i-2];} 61489d82c54SBarry Smith 61589d82c54SBarry Smith /* send the messages */ 616b0a32e0cSBarry Smith ierr = PetscMalloc((nsends+1)*sizeof(MPI_Request),&send_waits);CHKERRQ(ierr); 61732dcc486SBarry Smith ierr = PetscMalloc((nsends+1)*sizeof(PetscInt),&dest);CHKERRQ(ierr); 61889d82c54SBarry Smith cnt = 0; 61989d82c54SBarry Smith for (i=0; i<size; i++) { 62027c402fcSBarry Smith if (nprocs[2*i]) { 62132dcc486SBarry Smith ierr = MPI_Isend(sends+starts[i],2*nprocs[2*i],MPIU_INT,i,tag1,comm,send_waits+cnt);CHKERRQ(ierr); 62230dcb7c9SBarry Smith dest[cnt] = i; 62389d82c54SBarry Smith cnt++; 62489d82c54SBarry Smith } 62589d82c54SBarry Smith } 62689d82c54SBarry Smith ierr = PetscFree(starts);CHKERRQ(ierr); 62789d82c54SBarry Smith 62889d82c54SBarry Smith /* wait on receives */ 62997f1f81fSBarry Smith ierr = PetscMalloc((nrecvs+1)*sizeof(PetscMPIInt),&source);CHKERRQ(ierr); 63097f1f81fSBarry Smith ierr = PetscMalloc((nrecvs+1)*sizeof(PetscMPIInt),&len);CHKERRQ(ierr); 63189d82c54SBarry Smith cnt = nrecvs; 63232dcc486SBarry Smith ierr = PetscMalloc((ng+1)*sizeof(PetscInt),&nownedsenders);CHKERRQ(ierr); 63332dcc486SBarry Smith ierr = PetscMemzero(nownedsenders,ng*sizeof(PetscInt));CHKERRQ(ierr); 63489d82c54SBarry Smith while (cnt) { 63589d82c54SBarry Smith ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr); 63689d82c54SBarry Smith /* unpack receives into our local space */ 63732dcc486SBarry Smith ierr = MPI_Get_count(&recv_status,MPIU_INT,&len[imdex]);CHKERRQ(ierr); 63889d82c54SBarry Smith source[imdex] = recv_status.MPI_SOURCE; 63930dcb7c9SBarry Smith len[imdex] = len[imdex]/2; 640caba0dd0SBarry Smith /* count how many local owners for each of my global owned indices */ 64130dcb7c9SBarry Smith for (i=0; i<len[imdex]; i++) nownedsenders[recvs[2*imdex*nmax+2*i]-rstart]++; 64289d82c54SBarry Smith cnt--; 64389d82c54SBarry Smith } 64489d82c54SBarry Smith ierr = PetscFree(recv_waits);CHKERRQ(ierr); 64589d82c54SBarry Smith 64630dcb7c9SBarry Smith /* count how many globally owned indices are on an edge multiplied by how many processors own them. */ 647bc8ff85bSBarry Smith nowned = 0; 648bc8ff85bSBarry Smith nownedm = 0; 649bc8ff85bSBarry Smith for (i=0; i<ng; i++) { 650bc8ff85bSBarry Smith if (nownedsenders[i] > 1) {nownedm += nownedsenders[i]; nowned++;} 651bc8ff85bSBarry Smith } 652bc8ff85bSBarry Smith 653bc8ff85bSBarry Smith /* create single array to contain rank of all local owners of each globally owned index */ 65432dcc486SBarry Smith ierr = PetscMalloc((nownedm+1)*sizeof(PetscInt),&ownedsenders);CHKERRQ(ierr); 65532dcc486SBarry Smith ierr = PetscMalloc((ng+1)*sizeof(PetscInt),&starts);CHKERRQ(ierr); 656bc8ff85bSBarry Smith starts[0] = 0; 657bc8ff85bSBarry Smith for (i=1; i<ng; i++) { 658bc8ff85bSBarry Smith if (nownedsenders[i-1] > 1) starts[i] = starts[i-1] + nownedsenders[i-1]; 659bc8ff85bSBarry Smith else starts[i] = starts[i-1]; 660bc8ff85bSBarry Smith } 661bc8ff85bSBarry Smith 66230dcb7c9SBarry Smith /* for each nontrival globally owned node list all arriving processors */ 663bc8ff85bSBarry Smith for (i=0; i<nrecvs; i++) { 664bc8ff85bSBarry Smith for (j=0; j<len[i]; j++) { 66530dcb7c9SBarry Smith node = recvs[2*i*nmax+2*j]-rstart; 666bc8ff85bSBarry Smith if (nownedsenders[node] > 1) { 667bc8ff85bSBarry Smith ownedsenders[starts[node]++] = source[i]; 668bc8ff85bSBarry Smith } 669bc8ff85bSBarry Smith } 670bc8ff85bSBarry Smith } 671bc8ff85bSBarry Smith 67207b52d57SBarry Smith if (debug) { /* ----------------------------------- */ 67330dcb7c9SBarry Smith starts[0] = 0; 67430dcb7c9SBarry Smith for (i=1; i<ng; i++) { 67530dcb7c9SBarry Smith if (nownedsenders[i-1] > 1) starts[i] = starts[i-1] + nownedsenders[i-1]; 67630dcb7c9SBarry Smith else starts[i] = starts[i-1]; 67730dcb7c9SBarry Smith } 67830dcb7c9SBarry Smith for (i=0; i<ng; i++) { 67930dcb7c9SBarry Smith if (nownedsenders[i] > 1) { 68030dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"[%d] global node %d local owner processors: ",rank,i+rstart);CHKERRQ(ierr); 68130dcb7c9SBarry Smith for (j=0; j<nownedsenders[i]; j++) { 68230dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"%d ",ownedsenders[starts[i]+j]);CHKERRQ(ierr); 68330dcb7c9SBarry Smith } 68430dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"\n");CHKERRQ(ierr); 68530dcb7c9SBarry Smith } 68630dcb7c9SBarry Smith } 68730dcb7c9SBarry Smith ierr = PetscSynchronizedFlush(comm);CHKERRQ(ierr); 68807b52d57SBarry Smith }/* ----------------------------------- */ 68930dcb7c9SBarry Smith 6903677ff5aSBarry Smith /* wait on original sends */ 6913a96401aSBarry Smith if (nsends) { 692b0a32e0cSBarry Smith ierr = PetscMalloc(nsends*sizeof(MPI_Status),&send_status);CHKERRQ(ierr); 6933a96401aSBarry Smith ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr); 6943a96401aSBarry Smith ierr = PetscFree(send_status);CHKERRQ(ierr); 6953a96401aSBarry Smith } 69689d82c54SBarry Smith ierr = PetscFree(send_waits);CHKERRQ(ierr); 6973a96401aSBarry Smith ierr = PetscFree(sends);CHKERRQ(ierr); 6983677ff5aSBarry Smith ierr = PetscFree(nprocs);CHKERRQ(ierr); 6993677ff5aSBarry Smith 7003677ff5aSBarry Smith /* pack messages to send back to local owners */ 70130dcb7c9SBarry Smith starts[0] = 0; 70230dcb7c9SBarry Smith for (i=1; i<ng; i++) { 70330dcb7c9SBarry Smith if (nownedsenders[i-1] > 1) starts[i] = starts[i-1] + nownedsenders[i-1]; 70430dcb7c9SBarry Smith else starts[i] = starts[i-1]; 70530dcb7c9SBarry Smith } 70630dcb7c9SBarry Smith nsends2 = nrecvs; 70732dcc486SBarry Smith ierr = PetscMalloc((nsends2+1)*sizeof(PetscInt),&nprocs);CHKERRQ(ierr); /* length of each message */ 70830dcb7c9SBarry Smith for (i=0; i<nrecvs; i++) { 70930dcb7c9SBarry Smith nprocs[i] = 1; 71030dcb7c9SBarry Smith for (j=0; j<len[i]; j++) { 71130dcb7c9SBarry Smith node = recvs[2*i*nmax+2*j]-rstart; 71230dcb7c9SBarry Smith if (nownedsenders[node] > 1) { 71330dcb7c9SBarry Smith nprocs[i] += 2 + nownedsenders[node]; 71430dcb7c9SBarry Smith } 71530dcb7c9SBarry Smith } 71630dcb7c9SBarry Smith } 71730dcb7c9SBarry Smith nt = 0; for (i=0; i<nsends2; i++) nt += nprocs[i]; 71832dcc486SBarry Smith ierr = PetscMalloc((nt+1)*sizeof(PetscInt),&sends2);CHKERRQ(ierr); 71932dcc486SBarry Smith ierr = PetscMalloc((nsends2+1)*sizeof(PetscInt),&starts2);CHKERRQ(ierr); 72030dcb7c9SBarry Smith starts2[0] = 0; for (i=1; i<nsends2; i++) starts2[i] = starts2[i-1] + nprocs[i-1]; 72130dcb7c9SBarry Smith /* 72230dcb7c9SBarry Smith Each message is 1 + nprocs[i] long, and consists of 72330dcb7c9SBarry Smith (0) the number of nodes being sent back 72430dcb7c9SBarry Smith (1) the local node number, 72530dcb7c9SBarry Smith (2) the number of processors sharing it, 72630dcb7c9SBarry Smith (3) the processors sharing it 72730dcb7c9SBarry Smith */ 72830dcb7c9SBarry Smith for (i=0; i<nsends2; i++) { 72930dcb7c9SBarry Smith cnt = 1; 73030dcb7c9SBarry Smith sends2[starts2[i]] = 0; 73130dcb7c9SBarry Smith for (j=0; j<len[i]; j++) { 73230dcb7c9SBarry Smith node = recvs[2*i*nmax+2*j]-rstart; 73330dcb7c9SBarry Smith if (nownedsenders[node] > 1) { 73430dcb7c9SBarry Smith sends2[starts2[i]]++; 73530dcb7c9SBarry Smith sends2[starts2[i]+cnt++] = recvs[2*i*nmax+2*j+1]; 73630dcb7c9SBarry Smith sends2[starts2[i]+cnt++] = nownedsenders[node]; 73732dcc486SBarry Smith ierr = PetscMemcpy(&sends2[starts2[i]+cnt],&ownedsenders[starts[node]],nownedsenders[node]*sizeof(PetscInt));CHKERRQ(ierr); 73830dcb7c9SBarry Smith cnt += nownedsenders[node]; 73930dcb7c9SBarry Smith } 74030dcb7c9SBarry Smith } 74130dcb7c9SBarry Smith } 74230dcb7c9SBarry Smith 74330dcb7c9SBarry Smith /* receive the message lengths */ 74430dcb7c9SBarry Smith nrecvs2 = nsends; 74532dcc486SBarry Smith ierr = PetscMalloc((nrecvs2+1)*sizeof(PetscInt),&lens2);CHKERRQ(ierr); 74632dcc486SBarry Smith ierr = PetscMalloc((nrecvs2+1)*sizeof(PetscInt),&starts3);CHKERRQ(ierr); 747d44834fbSBarry Smith ierr = PetscMalloc((nrecvs2+1)*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr); 74830dcb7c9SBarry Smith for (i=0; i<nrecvs2; i++) { 749d44834fbSBarry Smith ierr = MPI_Irecv(&lens2[i],1,MPIU_INT,dest[i],tag2,comm,recv_waits+i);CHKERRQ(ierr); 75030dcb7c9SBarry Smith } 751d44834fbSBarry Smith 7528a8e0b3aSBarry Smith /* send the message lengths */ 7538a8e0b3aSBarry Smith for (i=0; i<nsends2; i++) { 7548a8e0b3aSBarry Smith ierr = MPI_Send(&nprocs[i],1,MPIU_INT,source[i],tag2,comm);CHKERRQ(ierr); 7558a8e0b3aSBarry Smith } 7568a8e0b3aSBarry Smith 757d44834fbSBarry Smith /* wait on receives of lens */ 7580c468ba9SBarry Smith if (nrecvs2) { 7590c468ba9SBarry Smith ierr = PetscMalloc(nrecvs2*sizeof(MPI_Status),&recv_statuses);CHKERRQ(ierr); 760d44834fbSBarry Smith ierr = MPI_Waitall(nrecvs2,recv_waits,recv_statuses);CHKERRQ(ierr); 761d44834fbSBarry Smith ierr = PetscFree(recv_statuses);CHKERRQ(ierr); 7620c468ba9SBarry Smith } 763d44834fbSBarry Smith ierr = PetscFree(recv_waits); 764d44834fbSBarry Smith 76530dcb7c9SBarry Smith starts3[0] = 0; 766d44834fbSBarry Smith nt = 0; 76730dcb7c9SBarry Smith for (i=0; i<nrecvs2-1; i++) { 76830dcb7c9SBarry Smith starts3[i+1] = starts3[i] + lens2[i]; 769d44834fbSBarry Smith nt += lens2[i]; 77030dcb7c9SBarry Smith } 771d44834fbSBarry Smith nt += lens2[nrecvs2-1]; 772d44834fbSBarry Smith 77332dcc486SBarry Smith ierr = PetscMalloc((nt+1)*sizeof(PetscInt),&recvs2);CHKERRQ(ierr); 774b0a32e0cSBarry Smith ierr = PetscMalloc((nrecvs2+1)*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr); 77552b72c4aSBarry Smith for (i=0; i<nrecvs2; i++) { 77632dcc486SBarry Smith ierr = MPI_Irecv(recvs2+starts3[i],lens2[i],MPIU_INT,dest[i],tag3,comm,recv_waits+i);CHKERRQ(ierr); 77730dcb7c9SBarry Smith } 77830dcb7c9SBarry Smith 77930dcb7c9SBarry Smith /* send the messages */ 780b0a32e0cSBarry Smith ierr = PetscMalloc((nsends2+1)*sizeof(MPI_Request),&send_waits);CHKERRQ(ierr); 78130dcb7c9SBarry Smith for (i=0; i<nsends2; i++) { 78232dcc486SBarry Smith ierr = MPI_Isend(sends2+starts2[i],nprocs[i],MPIU_INT,source[i],tag3,comm,send_waits+i);CHKERRQ(ierr); 78330dcb7c9SBarry Smith } 78430dcb7c9SBarry Smith 78530dcb7c9SBarry Smith /* wait on receives */ 7860c468ba9SBarry Smith if (nrecvs2) { 7870c468ba9SBarry Smith ierr = PetscMalloc(nrecvs2*sizeof(MPI_Status),&recv_statuses);CHKERRQ(ierr); 78830dcb7c9SBarry Smith ierr = MPI_Waitall(nrecvs2,recv_waits,recv_statuses);CHKERRQ(ierr); 78930dcb7c9SBarry Smith ierr = PetscFree(recv_statuses);CHKERRQ(ierr); 7900c468ba9SBarry Smith } 79130dcb7c9SBarry Smith ierr = PetscFree(recv_waits);CHKERRQ(ierr); 79230dcb7c9SBarry Smith ierr = PetscFree(nprocs);CHKERRQ(ierr); 79330dcb7c9SBarry Smith 79407b52d57SBarry Smith if (debug) { /* ----------------------------------- */ 79530dcb7c9SBarry Smith cnt = 0; 79630dcb7c9SBarry Smith for (i=0; i<nrecvs2; i++) { 79730dcb7c9SBarry Smith nt = recvs2[cnt++]; 79830dcb7c9SBarry Smith for (j=0; j<nt; j++) { 79930dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"[%d] local node %d number of subdomains %d: ",rank,recvs2[cnt],recvs2[cnt+1]);CHKERRQ(ierr); 80030dcb7c9SBarry Smith for (k=0; k<recvs2[cnt+1]; k++) { 80130dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"%d ",recvs2[cnt+2+k]);CHKERRQ(ierr); 80230dcb7c9SBarry Smith } 80330dcb7c9SBarry Smith cnt += 2 + recvs2[cnt+1]; 80430dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"\n");CHKERRQ(ierr); 80530dcb7c9SBarry Smith } 80630dcb7c9SBarry Smith } 80730dcb7c9SBarry Smith ierr = PetscSynchronizedFlush(comm);CHKERRQ(ierr); 80807b52d57SBarry Smith } /* ----------------------------------- */ 80930dcb7c9SBarry Smith 81030dcb7c9SBarry Smith /* count number subdomains for each local node */ 81132dcc486SBarry Smith ierr = PetscMalloc(size*sizeof(PetscInt),&nprocs);CHKERRQ(ierr); 81232dcc486SBarry Smith ierr = PetscMemzero(nprocs,size*sizeof(PetscInt));CHKERRQ(ierr); 81330dcb7c9SBarry Smith cnt = 0; 81430dcb7c9SBarry Smith for (i=0; i<nrecvs2; i++) { 81530dcb7c9SBarry Smith nt = recvs2[cnt++]; 81630dcb7c9SBarry Smith for (j=0; j<nt; j++) { 81730dcb7c9SBarry Smith for (k=0; k<recvs2[cnt+1]; k++) { 81830dcb7c9SBarry Smith nprocs[recvs2[cnt+2+k]]++; 81930dcb7c9SBarry Smith } 82030dcb7c9SBarry Smith cnt += 2 + recvs2[cnt+1]; 82130dcb7c9SBarry Smith } 82230dcb7c9SBarry Smith } 82330dcb7c9SBarry Smith nt = 0; for (i=0; i<size; i++) nt += (nprocs[i] > 0); 82430dcb7c9SBarry Smith *nproc = nt; 82532dcc486SBarry Smith ierr = PetscMalloc((nt+1)*sizeof(PetscInt),procs);CHKERRQ(ierr); 82632dcc486SBarry Smith ierr = PetscMalloc((nt+1)*sizeof(PetscInt),numprocs);CHKERRQ(ierr); 82732dcc486SBarry Smith ierr = PetscMalloc((nt+1)*sizeof(PetscInt*),indices);CHKERRQ(ierr); 82832dcc486SBarry Smith ierr = PetscMalloc(size*sizeof(PetscInt),&bprocs);CHKERRQ(ierr); 82930dcb7c9SBarry Smith cnt = 0; 83030dcb7c9SBarry Smith for (i=0; i<size; i++) { 83130dcb7c9SBarry Smith if (nprocs[i] > 0) { 83230dcb7c9SBarry Smith bprocs[i] = cnt; 83330dcb7c9SBarry Smith (*procs)[cnt] = i; 83430dcb7c9SBarry Smith (*numprocs)[cnt] = nprocs[i]; 83532dcc486SBarry Smith ierr = PetscMalloc(nprocs[i]*sizeof(PetscInt),&(*indices)[cnt]);CHKERRQ(ierr); 83630dcb7c9SBarry Smith cnt++; 83730dcb7c9SBarry Smith } 83830dcb7c9SBarry Smith } 83930dcb7c9SBarry Smith 84030dcb7c9SBarry Smith /* make the list of subdomains for each nontrivial local node */ 84132dcc486SBarry Smith ierr = PetscMemzero(*numprocs,nt*sizeof(PetscInt));CHKERRQ(ierr); 84230dcb7c9SBarry Smith cnt = 0; 84330dcb7c9SBarry Smith for (i=0; i<nrecvs2; i++) { 84430dcb7c9SBarry Smith nt = recvs2[cnt++]; 84530dcb7c9SBarry Smith for (j=0; j<nt; j++) { 84630dcb7c9SBarry Smith for (k=0; k<recvs2[cnt+1]; k++) { 84730dcb7c9SBarry Smith (*indices)[bprocs[recvs2[cnt+2+k]]][(*numprocs)[bprocs[recvs2[cnt+2+k]]]++] = recvs2[cnt]; 84830dcb7c9SBarry Smith } 84930dcb7c9SBarry Smith cnt += 2 + recvs2[cnt+1]; 85030dcb7c9SBarry Smith } 85130dcb7c9SBarry Smith } 85230dcb7c9SBarry Smith ierr = PetscFree(bprocs);CHKERRQ(ierr); 85307b52d57SBarry Smith ierr = PetscFree(recvs2);CHKERRQ(ierr); 85430dcb7c9SBarry Smith 85507b52d57SBarry Smith /* sort the node indexing by their global numbers */ 85607b52d57SBarry Smith nt = *nproc; 85707b52d57SBarry Smith for (i=0; i<nt; i++) { 85832dcc486SBarry Smith ierr = PetscMalloc(((*numprocs)[i])*sizeof(PetscInt),&tmp);CHKERRQ(ierr); 85907b52d57SBarry Smith for (j=0; j<(*numprocs)[i]; j++) { 86007b52d57SBarry Smith tmp[j] = lindices[(*indices)[i][j]]; 86107b52d57SBarry Smith } 86207b52d57SBarry Smith ierr = PetscSortIntWithArray((*numprocs)[i],tmp,(*indices)[i]);CHKERRQ(ierr); 86307b52d57SBarry Smith ierr = PetscFree(tmp);CHKERRQ(ierr); 86407b52d57SBarry Smith } 86507b52d57SBarry Smith 86607b52d57SBarry Smith if (debug) { /* ----------------------------------- */ 86730dcb7c9SBarry Smith nt = *nproc; 86830dcb7c9SBarry Smith for (i=0; i<nt; i++) { 86930dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"[%d] subdomain %d number of indices %d: ",rank,(*procs)[i],(*numprocs)[i]);CHKERRQ(ierr); 87030dcb7c9SBarry Smith for (j=0; j<(*numprocs)[i]; j++) { 87130dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"%d ",(*indices)[i][j]);CHKERRQ(ierr); 87230dcb7c9SBarry Smith } 87330dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"\n");CHKERRQ(ierr); 87430dcb7c9SBarry Smith } 87530dcb7c9SBarry Smith ierr = PetscSynchronizedFlush(comm);CHKERRQ(ierr); 87607b52d57SBarry Smith } /* ----------------------------------- */ 87730dcb7c9SBarry Smith 87830dcb7c9SBarry Smith /* wait on sends */ 87930dcb7c9SBarry Smith if (nsends2) { 880b0a32e0cSBarry Smith ierr = PetscMalloc(nsends2*sizeof(MPI_Status),&send_status);CHKERRQ(ierr); 88130dcb7c9SBarry Smith ierr = MPI_Waitall(nsends2,send_waits,send_status);CHKERRQ(ierr); 88230dcb7c9SBarry Smith ierr = PetscFree(send_status);CHKERRQ(ierr); 88330dcb7c9SBarry Smith } 88430dcb7c9SBarry Smith 88530dcb7c9SBarry Smith ierr = PetscFree(starts3);CHKERRQ(ierr); 88630dcb7c9SBarry Smith ierr = PetscFree(dest);CHKERRQ(ierr); 88730dcb7c9SBarry Smith ierr = PetscFree(send_waits);CHKERRQ(ierr); 8883677ff5aSBarry Smith 889bc8ff85bSBarry Smith ierr = PetscFree(nownedsenders);CHKERRQ(ierr); 890bc8ff85bSBarry Smith ierr = PetscFree(ownedsenders);CHKERRQ(ierr); 891bc8ff85bSBarry Smith ierr = PetscFree(starts);CHKERRQ(ierr); 89230dcb7c9SBarry Smith ierr = PetscFree(starts2);CHKERRQ(ierr); 89330dcb7c9SBarry Smith ierr = PetscFree(lens2);CHKERRQ(ierr); 89489d82c54SBarry Smith 89589d82c54SBarry Smith ierr = PetscFree(source);CHKERRQ(ierr); 89697f1f81fSBarry Smith ierr = PetscFree(len);CHKERRQ(ierr); 89789d82c54SBarry Smith ierr = PetscFree(recvs);CHKERRQ(ierr); 8983a96401aSBarry Smith ierr = PetscFree(nprocs);CHKERRQ(ierr); 89930dcb7c9SBarry Smith ierr = PetscFree(sends2);CHKERRQ(ierr); 90024cf384cSBarry Smith 90124cf384cSBarry Smith /* put the information about myself as the first entry in the list */ 90224cf384cSBarry Smith first_procs = (*procs)[0]; 90324cf384cSBarry Smith first_numprocs = (*numprocs)[0]; 90424cf384cSBarry Smith first_indices = (*indices)[0]; 90524cf384cSBarry Smith for (i=0; i<*nproc; i++) { 90624cf384cSBarry Smith if ((*procs)[i] == rank) { 90724cf384cSBarry Smith (*procs)[0] = (*procs)[i]; 90824cf384cSBarry Smith (*numprocs)[0] = (*numprocs)[i]; 90924cf384cSBarry Smith (*indices)[0] = (*indices)[i]; 91024cf384cSBarry Smith (*procs)[i] = first_procs; 91124cf384cSBarry Smith (*numprocs)[i] = first_numprocs; 91224cf384cSBarry Smith (*indices)[i] = first_indices; 91324cf384cSBarry Smith break; 91424cf384cSBarry Smith } 91524cf384cSBarry Smith } 91689d82c54SBarry Smith PetscFunctionReturn(0); 91789d82c54SBarry Smith } 91889d82c54SBarry Smith 9194a2ae208SSatish Balay #undef __FUNCT__ 9204a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingRestoreInfo" 92107b52d57SBarry Smith /*@C 92207b52d57SBarry Smith ISLocalToGlobalMappingRestoreInfo - Frees the memory allocated by ISLocalToGlobalMappingGetInfo() 92389d82c54SBarry Smith 92407b52d57SBarry Smith Collective on ISLocalToGlobalMapping 92507b52d57SBarry Smith 92607b52d57SBarry Smith Input Parameters: 92707b52d57SBarry Smith . mapping - the mapping from local to global indexing 92807b52d57SBarry Smith 92907b52d57SBarry Smith Output Parameter: 93007b52d57SBarry Smith + nproc - number of processors that are connected to this one 93107b52d57SBarry Smith . proc - neighboring processors 93207b52d57SBarry Smith . numproc - number of indices for each processor 93307b52d57SBarry Smith - indices - indices of local nodes shared with neighbor (sorted by global numbering) 93407b52d57SBarry Smith 93507b52d57SBarry Smith Level: advanced 93607b52d57SBarry Smith 93707b52d57SBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreateIS(), ISLocalToGlobalMappingCreate(), 93807b52d57SBarry Smith ISLocalToGlobalMappingGetInfo() 93907b52d57SBarry Smith @*/ 9400c735eedSKris Buschelman PetscErrorCode PETSCVEC_DLLEXPORT ISLocalToGlobalMappingRestoreInfo(ISLocalToGlobalMapping mapping,PetscInt *nproc,PetscInt *procs[],PetscInt *numprocs[],PetscInt **indices[]) 94107b52d57SBarry Smith { 9426849ba73SBarry Smith PetscErrorCode ierr; 94332dcc486SBarry Smith PetscInt i; 94407b52d57SBarry Smith 94507b52d57SBarry Smith PetscFunctionBegin; 94605b42c5fSBarry Smith ierr = PetscFree(*procs);CHKERRQ(ierr); 94705b42c5fSBarry Smith ierr = PetscFree(*numprocs);CHKERRQ(ierr); 94800ff320aSBarry Smith if (*indices) { 94905b42c5fSBarry Smith ierr = PetscFree((*indices)[0]);CHKERRQ(ierr); 95000ff320aSBarry Smith for (i=1; i<*nproc; i++) { 95105b42c5fSBarry Smith ierr = PetscFree((*indices)[i]);CHKERRQ(ierr); 95207b52d57SBarry Smith } 95307b52d57SBarry Smith ierr = PetscFree(*indices);CHKERRQ(ierr); 95424cf384cSBarry Smith } 95507b52d57SBarry Smith PetscFunctionReturn(0); 95607b52d57SBarry Smith } 957