12362add9SBarry Smith 2b45d2f2cSJed Brown #include <petsc-private/isimpl.h> /*I "petscis.h" I*/ 30c312b8eSJed Brown #include <petscsf.h> 4665c2dedSJed Brown #include <petscviewer.h> 52362add9SBarry Smith 67087cfbeSBarry Smith PetscClassId IS_LTOGM_CLASSID; 78e58c17dSMatthew Knepley 84a2ae208SSatish Balay #undef __FUNCT__ 9186d4ecdSBarry Smith #define __FUNCT__ "ISL2GMapApply" 10186d4ecdSBarry Smith PetscErrorCode ISG2LMapApply(ISLocalToGlobalMapping mapping,PetscInt n,const PetscInt in[],PetscInt out[]) 11186d4ecdSBarry Smith { 12186d4ecdSBarry Smith PetscErrorCode ierr; 13186d4ecdSBarry Smith PetscInt i,*globals = mapping->globals,start = mapping->globalstart,end = mapping->globalend; 14186d4ecdSBarry Smith 15186d4ecdSBarry Smith PetscFunctionBegin; 16186d4ecdSBarry Smith if (!mapping->globals) { 17186d4ecdSBarry Smith ierr = ISGlobalToLocalMappingApply(mapping,IS_GTOLM_MASK,0,0,0,0);CHKERRQ(ierr); 18186d4ecdSBarry Smith } 19186d4ecdSBarry Smith for (i=0; i<n; i++) { 20186d4ecdSBarry Smith if (in[i] < 0) out[i] = in[i]; 21186d4ecdSBarry Smith else if (in[i] < start) out[i] = -1; 22186d4ecdSBarry Smith else if (in[i] > end) out[i] = -1; 23186d4ecdSBarry Smith else out[i] = globals[in[i] - start]; 24186d4ecdSBarry Smith } 25186d4ecdSBarry Smith PetscFunctionReturn(0); 26186d4ecdSBarry Smith } 27186d4ecdSBarry Smith 28186d4ecdSBarry Smith 29186d4ecdSBarry Smith #undef __FUNCT__ 304a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingGetSize" 313b9aefa3SBarry Smith /*@C 323b9aefa3SBarry Smith ISLocalToGlobalMappingGetSize - Gets the local size of a local to global mapping. 333b9aefa3SBarry Smith 343b9aefa3SBarry Smith Not Collective 353b9aefa3SBarry Smith 363b9aefa3SBarry Smith Input Parameter: 373b9aefa3SBarry Smith . ltog - local to global mapping 383b9aefa3SBarry Smith 393b9aefa3SBarry Smith Output Parameter: 403b9aefa3SBarry Smith . n - the number of entries in the local mapping 413b9aefa3SBarry Smith 423b9aefa3SBarry Smith Level: advanced 433b9aefa3SBarry Smith 44273d9f13SBarry Smith Concepts: mapping^local to global 453b9aefa3SBarry Smith 463b9aefa3SBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreate() 473b9aefa3SBarry Smith @*/ 487087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingGetSize(ISLocalToGlobalMapping mapping,PetscInt *n) 493b9aefa3SBarry Smith { 503b9aefa3SBarry Smith PetscFunctionBegin; 510700a824SBarry Smith PetscValidHeaderSpecific(mapping,IS_LTOGM_CLASSID,1); 524482741eSBarry Smith PetscValidIntPointer(n,2); 533b9aefa3SBarry Smith *n = mapping->n; 543b9aefa3SBarry Smith PetscFunctionReturn(0); 553b9aefa3SBarry Smith } 563b9aefa3SBarry Smith 574a2ae208SSatish Balay #undef __FUNCT__ 584a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingView" 595a5d4f66SBarry Smith /*@C 605a5d4f66SBarry Smith ISLocalToGlobalMappingView - View a local to global mapping 615a5d4f66SBarry Smith 62b9cd556bSLois Curfman McInnes Not Collective 63b9cd556bSLois Curfman McInnes 645a5d4f66SBarry Smith Input Parameters: 653b9aefa3SBarry Smith + ltog - local to global mapping 663b9aefa3SBarry Smith - viewer - viewer 675a5d4f66SBarry Smith 68a997ad1aSLois Curfman McInnes Level: advanced 69a997ad1aSLois Curfman McInnes 70273d9f13SBarry Smith Concepts: mapping^local to global 715a5d4f66SBarry Smith 725a5d4f66SBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreate() 735a5d4f66SBarry Smith @*/ 747087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingView(ISLocalToGlobalMapping mapping,PetscViewer viewer) 755a5d4f66SBarry Smith { 7632dcc486SBarry Smith PetscInt i; 7732dcc486SBarry Smith PetscMPIInt rank; 78ace3abfcSBarry Smith PetscBool iascii; 796849ba73SBarry Smith PetscErrorCode ierr; 805a5d4f66SBarry Smith 815a5d4f66SBarry Smith PetscFunctionBegin; 820700a824SBarry Smith PetscValidHeaderSpecific(mapping,IS_LTOGM_CLASSID,1); 833050cee2SBarry Smith if (!viewer) { 84ce94432eSBarry Smith ierr = PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject)mapping),&viewer);CHKERRQ(ierr); 853050cee2SBarry Smith } 860700a824SBarry Smith PetscValidHeaderSpecific(viewer,PETSC_VIEWER_CLASSID,2); 875a5d4f66SBarry Smith 88ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mapping),&rank);CHKERRQ(ierr); 89251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 9032077d6dSBarry Smith if (iascii) { 917b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_TRUE);CHKERRQ(ierr); 925a5d4f66SBarry Smith for (i=0; i<mapping->n; i++) { 93b0a32e0cSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] %d %d\n",rank,i,mapping->indices[i]);CHKERRQ(ierr); 946831982aSBarry Smith } 95b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 967b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_FALSE);CHKERRQ(ierr); 977b23a99aSBarry Smith } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Viewer type %s not supported for ISLocalToGlobalMapping",((PetscObject)viewer)->type_name); 985a5d4f66SBarry Smith PetscFunctionReturn(0); 995a5d4f66SBarry Smith } 1005a5d4f66SBarry Smith 1014a2ae208SSatish Balay #undef __FUNCT__ 1024a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingCreateIS" 1031f428162SBarry Smith /*@ 1042bdab257SBarry Smith ISLocalToGlobalMappingCreateIS - Creates a mapping between a local (0 to n) 1052bdab257SBarry Smith ordering and a global parallel ordering. 1062bdab257SBarry Smith 1070f5bd95cSBarry Smith Not collective 108b9cd556bSLois Curfman McInnes 109a997ad1aSLois Curfman McInnes Input Parameter: 1108c03b21aSDmitry Karpeev . is - index set containing the global numbers for each local number 1112bdab257SBarry Smith 112a997ad1aSLois Curfman McInnes Output Parameter: 1132bdab257SBarry Smith . mapping - new mapping data structure 1142bdab257SBarry Smith 115a997ad1aSLois Curfman McInnes Level: advanced 116a997ad1aSLois Curfman McInnes 117273d9f13SBarry Smith Concepts: mapping^local to global 1182bdab257SBarry Smith 1192bdab257SBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreate() 1202bdab257SBarry Smith @*/ 1217087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingCreateIS(IS is,ISLocalToGlobalMapping *mapping) 1222bdab257SBarry Smith { 1236849ba73SBarry Smith PetscErrorCode ierr; 1245d0c19d7SBarry Smith PetscInt n; 1255d0c19d7SBarry Smith const PetscInt *indices; 1262bdab257SBarry Smith MPI_Comm comm; 1273a40ed3dSBarry Smith 1283a40ed3dSBarry Smith PetscFunctionBegin; 1290700a824SBarry Smith PetscValidHeaderSpecific(is,IS_CLASSID,1); 1304482741eSBarry Smith PetscValidPointer(mapping,2); 1312bdab257SBarry Smith 1322bdab257SBarry Smith ierr = PetscObjectGetComm((PetscObject)is,&comm);CHKERRQ(ierr); 1333b9aefa3SBarry Smith ierr = ISGetLocalSize(is,&n);CHKERRQ(ierr); 1342bdab257SBarry Smith ierr = ISGetIndices(is,&indices);CHKERRQ(ierr); 135d5ad8652SBarry Smith ierr = ISLocalToGlobalMappingCreate(comm,n,indices,PETSC_COPY_VALUES,mapping);CHKERRQ(ierr); 1362bdab257SBarry Smith ierr = ISRestoreIndices(is,&indices);CHKERRQ(ierr); 1373a40ed3dSBarry Smith PetscFunctionReturn(0); 1382bdab257SBarry Smith } 1395a5d4f66SBarry Smith 140a4d96a55SJed Brown #undef __FUNCT__ 141a4d96a55SJed Brown #define __FUNCT__ "ISLocalToGlobalMappingCreateSF" 142a4d96a55SJed Brown /*@C 143a4d96a55SJed Brown ISLocalToGlobalMappingCreateSF - Creates a mapping between a local (0 to n) 144a4d96a55SJed Brown ordering and a global parallel ordering. 145a4d96a55SJed Brown 146a4d96a55SJed Brown Collective 147a4d96a55SJed Brown 148a4d96a55SJed Brown Input Parameter: 149a4d96a55SJed Brown + sf - star forest mapping contiguous local indices to (rank, offset) 150a4d96a55SJed Brown - start - first global index on this process 151a4d96a55SJed Brown 152a4d96a55SJed Brown Output Parameter: 153a4d96a55SJed Brown . mapping - new mapping data structure 154a4d96a55SJed Brown 155a4d96a55SJed Brown Level: advanced 156a4d96a55SJed Brown 157a4d96a55SJed Brown Concepts: mapping^local to global 158a4d96a55SJed Brown 159a4d96a55SJed Brown .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreate(), ISLocalToGlobalMappingCreateIS() 160a4d96a55SJed Brown @*/ 161a4d96a55SJed Brown PetscErrorCode ISLocalToGlobalMappingCreateSF(PetscSF sf,PetscInt start,ISLocalToGlobalMapping *mapping) 162a4d96a55SJed Brown { 163a4d96a55SJed Brown PetscErrorCode ierr; 164a4d96a55SJed Brown PetscInt i,maxlocal,nroots,nleaves,*globals,*ltog; 165a4d96a55SJed Brown const PetscInt *ilocal; 166a4d96a55SJed Brown MPI_Comm comm; 167a4d96a55SJed Brown 168a4d96a55SJed Brown PetscFunctionBegin; 169a4d96a55SJed Brown PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 170a4d96a55SJed Brown PetscValidPointer(mapping,3); 171a4d96a55SJed Brown 172a4d96a55SJed Brown ierr = PetscObjectGetComm((PetscObject)sf,&comm);CHKERRQ(ierr); 1730298fd71SBarry Smith ierr = PetscSFGetGraph(sf,&nroots,&nleaves,&ilocal,NULL);CHKERRQ(ierr); 174f6e5521dSKarl Rupp if (ilocal) { 175f6e5521dSKarl Rupp for (i=0,maxlocal=0; i<nleaves; i++) maxlocal = PetscMax(maxlocal,ilocal[i]+1); 176f6e5521dSKarl Rupp } 177a4d96a55SJed Brown else maxlocal = nleaves; 178a4d96a55SJed Brown ierr = PetscMalloc(nroots*sizeof(PetscInt),&globals);CHKERRQ(ierr); 179a4d96a55SJed Brown ierr = PetscMalloc(maxlocal*sizeof(PetscInt),<og);CHKERRQ(ierr); 180a4d96a55SJed Brown for (i=0; i<nroots; i++) globals[i] = start + i; 181a4d96a55SJed Brown for (i=0; i<maxlocal; i++) ltog[i] = -1; 182a4d96a55SJed Brown ierr = PetscSFBcastBegin(sf,MPIU_INT,globals,ltog);CHKERRQ(ierr); 183a4d96a55SJed Brown ierr = PetscSFBcastEnd(sf,MPIU_INT,globals,ltog);CHKERRQ(ierr); 184a4d96a55SJed Brown ierr = ISLocalToGlobalMappingCreate(comm,maxlocal,ltog,PETSC_OWN_POINTER,mapping);CHKERRQ(ierr); 185a4d96a55SJed Brown ierr = PetscFree(globals);CHKERRQ(ierr); 186a4d96a55SJed Brown PetscFunctionReturn(0); 187a4d96a55SJed Brown } 188b46b645bSBarry Smith 1894a2ae208SSatish Balay #undef __FUNCT__ 1904a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingCreate" 191ba5bb76aSSatish Balay /*@ 19290f02eecSBarry Smith ISLocalToGlobalMappingCreate - Creates a mapping between a local (0 to n) 19390f02eecSBarry Smith ordering and a global parallel ordering. 1942362add9SBarry Smith 19589d82c54SBarry Smith Not Collective, but communicator may have more than one process 196b9cd556bSLois Curfman McInnes 1972362add9SBarry Smith Input Parameters: 19889d82c54SBarry Smith + comm - MPI communicator 19990f02eecSBarry Smith . n - the number of local elements 2009669e4d8SBarry Smith . indices - the global index for each local element, these do not need to be in increasing order (sorted) 201d5ad8652SBarry Smith - mode - see PetscCopyMode 2022362add9SBarry Smith 203a997ad1aSLois Curfman McInnes Output Parameter: 20490f02eecSBarry Smith . mapping - new mapping data structure 2052362add9SBarry Smith 206a997ad1aSLois Curfman McInnes Level: advanced 207a997ad1aSLois Curfman McInnes 208273d9f13SBarry Smith Concepts: mapping^local to global 2092362add9SBarry Smith 210d5ad8652SBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreateIS() 2112362add9SBarry Smith @*/ 2127087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingCreate(MPI_Comm cm,PetscInt n,const PetscInt indices[],PetscCopyMode mode,ISLocalToGlobalMapping *mapping) 2132362add9SBarry Smith { 2146849ba73SBarry Smith PetscErrorCode ierr; 21532dcc486SBarry Smith PetscInt *in; 216b46b645bSBarry Smith 217b46b645bSBarry Smith PetscFunctionBegin; 21873911063SBarry Smith if (n) PetscValidIntPointer(indices,3); 2194482741eSBarry Smith PetscValidPointer(mapping,4); 220b46b645bSBarry Smith 2210298fd71SBarry Smith *mapping = NULL; 222519f805aSKarl Rupp #if !defined(PETSC_USE_DYNAMIC_LIBRARIES) 223607a6623SBarry Smith ierr = ISInitializePackage();CHKERRQ(ierr); 2248e58c17dSMatthew Knepley #endif 2252362add9SBarry Smith 22667c2884eSBarry Smith ierr = PetscHeaderCreate(*mapping,_p_ISLocalToGlobalMapping,int,IS_LTOGM_CLASSID,"ISLocalToGlobalMapping","Local to global mapping","IS", 22752e6d16bSBarry Smith cm,ISLocalToGlobalMappingDestroy,ISLocalToGlobalMappingView);CHKERRQ(ierr); 228d4bb536fSBarry Smith (*mapping)->n = n; 229d4bb536fSBarry Smith /* 230d4bb536fSBarry Smith Do not create the global to local mapping. This is only created if 231d4bb536fSBarry Smith ISGlobalToLocalMapping() is called 232d4bb536fSBarry Smith */ 233d4bb536fSBarry Smith (*mapping)->globals = 0; 234d5ad8652SBarry Smith if (mode == PETSC_COPY_VALUES) { 235d5ad8652SBarry Smith ierr = PetscMalloc(n*sizeof(PetscInt),&in);CHKERRQ(ierr); 236d5ad8652SBarry Smith ierr = PetscMemcpy(in,indices,n*sizeof(PetscInt));CHKERRQ(ierr); 237*3bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)*mapping,n*sizeof(PetscInt));CHKERRQ(ierr); 238d5ad8652SBarry Smith (*mapping)->indices = in; 239f6e5521dSKarl Rupp } else if (mode == PETSC_OWN_POINTER) (*mapping)->indices = (PetscInt*)indices; 240f6e5521dSKarl Rupp else SETERRQ(cm,PETSC_ERR_SUP,"Cannot currently use PETSC_USE_POINTER"); 2413a40ed3dSBarry Smith PetscFunctionReturn(0); 2422362add9SBarry Smith } 2432362add9SBarry Smith 2444a2ae208SSatish Balay #undef __FUNCT__ 2454a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingBlock" 246bce096a4SSatish Balay /*@ 247323b833fSBarry Smith ISLocalToGlobalMappingBlock - Creates a blocked index version of an 248323b833fSBarry Smith ISLocalToGlobalMapping that is appropriate for MatSetLocalToGlobalMappingBlock() 249323b833fSBarry Smith and VecSetLocalToGlobalMappingBlock(). 250323b833fSBarry Smith 251323b833fSBarry Smith Not Collective, but communicator may have more than one process 252323b833fSBarry Smith 253323b833fSBarry Smith Input Parameters: 254323b833fSBarry Smith + inmap - original point-wise mapping 255323b833fSBarry Smith - bs - block size 256323b833fSBarry Smith 257323b833fSBarry Smith Output Parameter: 25869eb54c3SBarry Smith . outmap - block based mapping; the indices are relative to BLOCKS, not individual vector or matrix entries. 259323b833fSBarry Smith 260323b833fSBarry Smith Level: advanced 261323b833fSBarry Smith 262323b833fSBarry Smith Concepts: mapping^local to global 263323b833fSBarry Smith 264323b833fSBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreate(), ISLocalToGlobalMappingCreateIS() 265323b833fSBarry Smith @*/ 2667087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingBlock(ISLocalToGlobalMapping inmap,PetscInt bs,ISLocalToGlobalMapping *outmap) 267323b833fSBarry Smith { 2686849ba73SBarry Smith PetscErrorCode ierr; 26932dcc486SBarry Smith PetscInt *ii,i,n; 270323b833fSBarry Smith 271323b833fSBarry Smith PetscFunctionBegin; 2720700a824SBarry Smith PetscValidHeaderSpecific(inmap,IS_LTOGM_CLASSID,1); 273b2beed0aSJed Brown PetscValidPointer(outmap,3); 274323b833fSBarry Smith if (bs > 1) { 275323b833fSBarry Smith n = inmap->n/bs; 276e32f2f54SBarry Smith if (n*bs != inmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Pointwise mapping length is not divisible by block size"); 27732dcc486SBarry Smith ierr = PetscMalloc(n*sizeof(PetscInt),&ii);CHKERRQ(ierr); 278f6e5521dSKarl Rupp for (i=0; i<n; i++) ii[i] = inmap->indices[bs*i]/bs; 279ce94432eSBarry Smith ierr = ISLocalToGlobalMappingCreate(PetscObjectComm((PetscObject)inmap),n,ii,PETSC_OWN_POINTER,outmap);CHKERRQ(ierr); 280323b833fSBarry Smith } else { 281323b833fSBarry Smith ierr = PetscObjectReference((PetscObject)inmap);CHKERRQ(ierr); 282c3122656SLisandro Dalcin *outmap = inmap; 283323b833fSBarry Smith } 284323b833fSBarry Smith PetscFunctionReturn(0); 285323b833fSBarry Smith } 286323b833fSBarry Smith 2874a2ae208SSatish Balay #undef __FUNCT__ 2888ab951edSJed Brown #define __FUNCT__ "ISLocalToGlobalMappingUnBlock" 289b2beed0aSJed Brown /*@ 290b2beed0aSJed Brown ISLocalToGlobalMappingUnBlock - Creates a scalar index version of a blocked 291b2beed0aSJed Brown ISLocalToGlobalMapping 292b2beed0aSJed Brown 293b2beed0aSJed Brown Not Collective, but communicator may have more than one process 294b2beed0aSJed Brown 295b2beed0aSJed Brown Input Parameter: 296b2beed0aSJed Brown + inmap - block based mapping; the indices are relative to BLOCKS, not individual vector or matrix entries. 297b2beed0aSJed Brown - bs - block size 298b2beed0aSJed Brown 299b2beed0aSJed Brown Output Parameter: 300b2beed0aSJed Brown . outmap - pointwise mapping 301b2beed0aSJed Brown 302b2beed0aSJed Brown Level: advanced 303b2beed0aSJed Brown 304b2beed0aSJed Brown Concepts: mapping^local to global 305b2beed0aSJed Brown 306b2beed0aSJed Brown .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreate(), ISLocalToGlobalMappingBlock() 307b2beed0aSJed Brown @*/ 3087087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingUnBlock(ISLocalToGlobalMapping inmap,PetscInt bs,ISLocalToGlobalMapping *outmap) 309b2beed0aSJed Brown { 310b2beed0aSJed Brown PetscErrorCode ierr; 311b2beed0aSJed Brown PetscInt *ii,i,n; 312b2beed0aSJed Brown 313b2beed0aSJed Brown PetscFunctionBegin; 314b2beed0aSJed Brown PetscValidHeaderSpecific(inmap,IS_LTOGM_CLASSID,1); 315b2beed0aSJed Brown PetscValidPointer(outmap,2); 316b2beed0aSJed Brown if (bs > 1) { 317b2beed0aSJed Brown n = inmap->n*bs; 318b2beed0aSJed Brown ierr = PetscMalloc(n*sizeof(PetscInt),&ii);CHKERRQ(ierr); 319f6e5521dSKarl Rupp for (i=0; i<n; i++) ii[i] = inmap->indices[i/bs]*bs + (i%bs); 320ce94432eSBarry Smith ierr = ISLocalToGlobalMappingCreate(PetscObjectComm((PetscObject)inmap),n,ii,PETSC_OWN_POINTER,outmap);CHKERRQ(ierr); 321b2beed0aSJed Brown } else { 322b2beed0aSJed Brown ierr = PetscObjectReference((PetscObject)inmap);CHKERRQ(ierr); 323b2beed0aSJed Brown *outmap = inmap; 324b2beed0aSJed Brown } 325b2beed0aSJed Brown PetscFunctionReturn(0); 326b2beed0aSJed Brown } 327b2beed0aSJed Brown 328b2beed0aSJed Brown #undef __FUNCT__ 3294a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingDestroy" 33090f02eecSBarry Smith /*@ 33190f02eecSBarry Smith ISLocalToGlobalMappingDestroy - Destroys a mapping between a local (0 to n) 33290f02eecSBarry Smith ordering and a global parallel ordering. 33390f02eecSBarry Smith 3340f5bd95cSBarry Smith Note Collective 335b9cd556bSLois Curfman McInnes 33690f02eecSBarry Smith Input Parameters: 33790f02eecSBarry Smith . mapping - mapping data structure 33890f02eecSBarry Smith 339a997ad1aSLois Curfman McInnes Level: advanced 340a997ad1aSLois Curfman McInnes 3413acfe500SLois Curfman McInnes .seealso: ISLocalToGlobalMappingCreate() 34290f02eecSBarry Smith @*/ 3436bf464f9SBarry Smith PetscErrorCode ISLocalToGlobalMappingDestroy(ISLocalToGlobalMapping *mapping) 34490f02eecSBarry Smith { 345dfbe8321SBarry Smith PetscErrorCode ierr; 3465fd66863SKarl Rupp 3473a40ed3dSBarry Smith PetscFunctionBegin; 3486bf464f9SBarry Smith if (!*mapping) PetscFunctionReturn(0); 3496bf464f9SBarry Smith PetscValidHeaderSpecific((*mapping),IS_LTOGM_CLASSID,1); 350997056adSBarry Smith if (--((PetscObject)(*mapping))->refct > 0) {*mapping = 0;PetscFunctionReturn(0);} 3516bf464f9SBarry Smith ierr = PetscFree((*mapping)->indices);CHKERRQ(ierr); 3526bf464f9SBarry Smith ierr = PetscFree((*mapping)->globals);CHKERRQ(ierr); 353d38fa0fbSBarry Smith ierr = PetscHeaderDestroy(mapping);CHKERRQ(ierr); 354992144d0SBarry Smith *mapping = 0; 3553a40ed3dSBarry Smith PetscFunctionReturn(0); 35690f02eecSBarry Smith } 35790f02eecSBarry Smith 3584a2ae208SSatish Balay #undef __FUNCT__ 3594a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingApplyIS" 36090f02eecSBarry Smith /*@ 3613acfe500SLois Curfman McInnes ISLocalToGlobalMappingApplyIS - Creates from an IS in the local numbering 3623acfe500SLois Curfman McInnes a new index set using the global numbering defined in an ISLocalToGlobalMapping 3633acfe500SLois Curfman McInnes context. 36490f02eecSBarry Smith 365b9cd556bSLois Curfman McInnes Not collective 366b9cd556bSLois Curfman McInnes 36790f02eecSBarry Smith Input Parameters: 368b9cd556bSLois Curfman McInnes + mapping - mapping between local and global numbering 369b9cd556bSLois Curfman McInnes - is - index set in local numbering 37090f02eecSBarry Smith 37190f02eecSBarry Smith Output Parameters: 37290f02eecSBarry Smith . newis - index set in global numbering 37390f02eecSBarry Smith 374a997ad1aSLois Curfman McInnes Level: advanced 375a997ad1aSLois Curfman McInnes 376273d9f13SBarry Smith Concepts: mapping^local to global 3773acfe500SLois Curfman McInnes 37890f02eecSBarry Smith .seealso: ISLocalToGlobalMappingApply(), ISLocalToGlobalMappingCreate(), 379d4bb536fSBarry Smith ISLocalToGlobalMappingDestroy(), ISGlobalToLocalMappingApply() 38090f02eecSBarry Smith @*/ 3817087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingApplyIS(ISLocalToGlobalMapping mapping,IS is,IS *newis) 38290f02eecSBarry Smith { 3836849ba73SBarry Smith PetscErrorCode ierr; 3845d0c19d7SBarry Smith PetscInt n,i,*idxmap,*idxout,Nmax = mapping->n; 3855d0c19d7SBarry Smith const PetscInt *idxin; 3863a40ed3dSBarry Smith 3873a40ed3dSBarry Smith PetscFunctionBegin; 3880700a824SBarry Smith PetscValidHeaderSpecific(mapping,IS_LTOGM_CLASSID,1); 3890700a824SBarry Smith PetscValidHeaderSpecific(is,IS_CLASSID,2); 3904482741eSBarry Smith PetscValidPointer(newis,3); 39190f02eecSBarry Smith 3923b9aefa3SBarry Smith ierr = ISGetLocalSize(is,&n);CHKERRQ(ierr); 39390f02eecSBarry Smith ierr = ISGetIndices(is,&idxin);CHKERRQ(ierr); 39490f02eecSBarry Smith idxmap = mapping->indices; 39590f02eecSBarry Smith 3967c334f02SBarry Smith ierr = PetscMalloc(n*sizeof(PetscInt),&idxout);CHKERRQ(ierr); 39790f02eecSBarry Smith for (i=0; i<n; i++) { 398e32f2f54SBarry Smith if (idxin[i] >= Nmax) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local index %d too large %d (max) at %d",idxin[i],Nmax-1,i); 39990f02eecSBarry Smith idxout[i] = idxmap[idxin[i]]; 40090f02eecSBarry Smith } 4013b9aefa3SBarry Smith ierr = ISRestoreIndices(is,&idxin);CHKERRQ(ierr); 40270b3c8c7SBarry Smith ierr = ISCreateGeneral(PETSC_COMM_SELF,n,idxout,PETSC_OWN_POINTER,newis);CHKERRQ(ierr); 4033a40ed3dSBarry Smith PetscFunctionReturn(0); 40490f02eecSBarry Smith } 40590f02eecSBarry Smith 406afcb2eb5SJed Brown #undef __FUNCT__ 407afcb2eb5SJed Brown #define __FUNCT__ "ISLocalToGlobalMappingApply" 408b89cb25eSSatish Balay /*@ 4093acfe500SLois Curfman McInnes ISLocalToGlobalMappingApply - Takes a list of integers in a local numbering 4103acfe500SLois Curfman McInnes and converts them to the global numbering. 41190f02eecSBarry Smith 412b9cd556bSLois Curfman McInnes Not collective 413b9cd556bSLois Curfman McInnes 414bb25748dSBarry Smith Input Parameters: 415b9cd556bSLois Curfman McInnes + mapping - the local to global mapping context 416bb25748dSBarry Smith . N - number of integers 417b9cd556bSLois Curfman McInnes - in - input indices in local numbering 418bb25748dSBarry Smith 419bb25748dSBarry Smith Output Parameter: 420bb25748dSBarry Smith . out - indices in global numbering 421bb25748dSBarry Smith 422b9cd556bSLois Curfman McInnes Notes: 423b9cd556bSLois Curfman McInnes The in and out array parameters may be identical. 424d4bb536fSBarry Smith 425a997ad1aSLois Curfman McInnes Level: advanced 426a997ad1aSLois Curfman McInnes 427bb25748dSBarry Smith .seealso: ISLocalToGlobalMappingCreate(),ISLocalToGlobalMappingDestroy(), 4280752156aSBarry Smith ISLocalToGlobalMappingApplyIS(),AOCreateBasic(),AOApplicationToPetsc(), 429d4bb536fSBarry Smith AOPetscToApplication(), ISGlobalToLocalMappingApply() 430bb25748dSBarry Smith 431273d9f13SBarry Smith Concepts: mapping^local to global 432afcb2eb5SJed Brown @*/ 433afcb2eb5SJed Brown PetscErrorCode ISLocalToGlobalMappingApply(ISLocalToGlobalMapping mapping,PetscInt N,const PetscInt in[],PetscInt out[]) 434afcb2eb5SJed Brown { 435afcb2eb5SJed Brown PetscInt i,Nmax = mapping->n; 436afcb2eb5SJed Brown const PetscInt *idx = mapping->indices; 437d4bb536fSBarry Smith 438afcb2eb5SJed Brown PetscFunctionBegin; 439afcb2eb5SJed Brown for (i=0; i<N; i++) { 440afcb2eb5SJed Brown if (in[i] < 0) { 441afcb2eb5SJed Brown out[i] = in[i]; 442afcb2eb5SJed Brown continue; 443afcb2eb5SJed Brown } 444afcb2eb5SJed Brown if (in[i] >= Nmax) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local index %D too large %D (max) at %D",in[i],Nmax,i); 445afcb2eb5SJed Brown out[i] = idx[in[i]]; 446afcb2eb5SJed Brown } 447afcb2eb5SJed Brown PetscFunctionReturn(0); 448afcb2eb5SJed Brown } 449d4bb536fSBarry Smith 450d4bb536fSBarry Smith /* -----------------------------------------------------------------------------------------*/ 451d4bb536fSBarry Smith 4524a2ae208SSatish Balay #undef __FUNCT__ 4534a2ae208SSatish Balay #define __FUNCT__ "ISGlobalToLocalMappingSetUp_Private" 454d4bb536fSBarry Smith /* 455d4bb536fSBarry Smith Creates the global fields in the ISLocalToGlobalMapping structure 456d4bb536fSBarry Smith */ 4576849ba73SBarry Smith static PetscErrorCode ISGlobalToLocalMappingSetUp_Private(ISLocalToGlobalMapping mapping) 458d4bb536fSBarry Smith { 4596849ba73SBarry Smith PetscErrorCode ierr; 46032dcc486SBarry Smith PetscInt i,*idx = mapping->indices,n = mapping->n,end,start,*globals; 461d4bb536fSBarry Smith 4623a40ed3dSBarry Smith PetscFunctionBegin; 463d4bb536fSBarry Smith end = 0; 464ec268f7cSJed Brown start = PETSC_MAX_INT; 465d4bb536fSBarry Smith 466d4bb536fSBarry Smith for (i=0; i<n; i++) { 467d4bb536fSBarry Smith if (idx[i] < 0) continue; 468d4bb536fSBarry Smith if (idx[i] < start) start = idx[i]; 469d4bb536fSBarry Smith if (idx[i] > end) end = idx[i]; 470d4bb536fSBarry Smith } 471d4bb536fSBarry Smith if (start > end) {start = 0; end = -1;} 472d4bb536fSBarry Smith mapping->globalstart = start; 473d4bb536fSBarry Smith mapping->globalend = end; 474d4bb536fSBarry Smith 47532dcc486SBarry Smith ierr = PetscMalloc((end-start+2)*sizeof(PetscInt),&globals);CHKERRQ(ierr); 476b0a32e0cSBarry Smith mapping->globals = globals; 477f6e5521dSKarl Rupp for (i=0; i<end-start+1; i++) globals[i] = -1; 478d4bb536fSBarry Smith for (i=0; i<n; i++) { 479d4bb536fSBarry Smith if (idx[i] < 0) continue; 480d4bb536fSBarry Smith globals[idx[i] - start] = i; 481d4bb536fSBarry Smith } 482d4bb536fSBarry Smith 483*3bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)mapping,(end-start+1)*sizeof(PetscInt));CHKERRQ(ierr); 4843a40ed3dSBarry Smith PetscFunctionReturn(0); 485d4bb536fSBarry Smith } 486d4bb536fSBarry Smith 4874a2ae208SSatish Balay #undef __FUNCT__ 4884a2ae208SSatish Balay #define __FUNCT__ "ISGlobalToLocalMappingApply" 489d4bb536fSBarry Smith /*@ 490a997ad1aSLois Curfman McInnes ISGlobalToLocalMappingApply - Provides the local numbering for a list of integers 491a997ad1aSLois Curfman McInnes specified with a global numbering. 492d4bb536fSBarry Smith 493b9cd556bSLois Curfman McInnes Not collective 494b9cd556bSLois Curfman McInnes 495d4bb536fSBarry Smith Input Parameters: 496b9cd556bSLois Curfman McInnes + mapping - mapping between local and global numbering 497d4bb536fSBarry Smith . type - IS_GTOLM_MASK - replaces global indices with no local value with -1 498d4bb536fSBarry Smith IS_GTOLM_DROP - drops the indices with no local value from the output list 499d4bb536fSBarry Smith . n - number of global indices to map 500b9cd556bSLois Curfman McInnes - idx - global indices to map 501d4bb536fSBarry Smith 502d4bb536fSBarry Smith Output Parameters: 503b9cd556bSLois Curfman McInnes + nout - number of indices in output array (if type == IS_GTOLM_MASK then nout = n) 504b9cd556bSLois Curfman McInnes - idxout - local index of each global index, one must pass in an array long enough 505e182c471SBarry Smith to hold all the indices. You can call ISGlobalToLocalMappingApply() with 5060298fd71SBarry Smith idxout == NULL to determine the required length (returned in nout) 507e182c471SBarry Smith and then allocate the required space and call ISGlobalToLocalMappingApply() 508e182c471SBarry Smith a second time to set the values. 509d4bb536fSBarry Smith 510b9cd556bSLois Curfman McInnes Notes: 5110298fd71SBarry Smith Either nout or idxout may be NULL. idx and idxout may be identical. 512d4bb536fSBarry Smith 5130f5bd95cSBarry Smith This is not scalable in memory usage. Each processor requires O(Nglobal) size 5140f5bd95cSBarry Smith array to compute these. 5150f5bd95cSBarry Smith 516a997ad1aSLois Curfman McInnes Level: advanced 517a997ad1aSLois Curfman McInnes 51832fd6b96SBarry Smith Developer Note: The manual page states that idx and idxout may be identical but the calling 51932fd6b96SBarry Smith sequence declares idx as const so it cannot be the same as idxout. 52032fd6b96SBarry Smith 521273d9f13SBarry Smith Concepts: mapping^global to local 522d4bb536fSBarry Smith 523d4bb536fSBarry Smith .seealso: ISLocalToGlobalMappingApply(), ISLocalToGlobalMappingCreate(), 524d4bb536fSBarry Smith ISLocalToGlobalMappingDestroy() 525d4bb536fSBarry Smith @*/ 5267087cfbeSBarry Smith PetscErrorCode ISGlobalToLocalMappingApply(ISLocalToGlobalMapping mapping,ISGlobalToLocalMappingType type, 52732dcc486SBarry Smith PetscInt n,const PetscInt idx[],PetscInt *nout,PetscInt idxout[]) 528d4bb536fSBarry Smith { 52932dcc486SBarry Smith PetscInt i,*globals,nf = 0,tmp,start,end; 5306849ba73SBarry Smith PetscErrorCode ierr; 531d4bb536fSBarry Smith 5323a40ed3dSBarry Smith PetscFunctionBegin; 5330700a824SBarry Smith PetscValidHeaderSpecific(mapping,IS_LTOGM_CLASSID,1); 534d4bb536fSBarry Smith if (!mapping->globals) { 535d4bb536fSBarry Smith ierr = ISGlobalToLocalMappingSetUp_Private(mapping);CHKERRQ(ierr); 536d4bb536fSBarry Smith } 537d4bb536fSBarry Smith globals = mapping->globals; 538d4bb536fSBarry Smith start = mapping->globalstart; 539d4bb536fSBarry Smith end = mapping->globalend; 540d4bb536fSBarry Smith 541d4bb536fSBarry Smith if (type == IS_GTOLM_MASK) { 542d4bb536fSBarry Smith if (idxout) { 543d4bb536fSBarry Smith for (i=0; i<n; i++) { 544d4bb536fSBarry Smith if (idx[i] < 0) idxout[i] = idx[i]; 545d4bb536fSBarry Smith else if (idx[i] < start) idxout[i] = -1; 546d4bb536fSBarry Smith else if (idx[i] > end) idxout[i] = -1; 547d4bb536fSBarry Smith else idxout[i] = globals[idx[i] - start]; 548d4bb536fSBarry Smith } 549d4bb536fSBarry Smith } 550d4bb536fSBarry Smith if (nout) *nout = n; 551d4bb536fSBarry Smith } else { 552d4bb536fSBarry Smith if (idxout) { 553d4bb536fSBarry Smith for (i=0; i<n; i++) { 554d4bb536fSBarry Smith if (idx[i] < 0) continue; 555d4bb536fSBarry Smith if (idx[i] < start) continue; 556d4bb536fSBarry Smith if (idx[i] > end) continue; 557d4bb536fSBarry Smith tmp = globals[idx[i] - start]; 558d4bb536fSBarry Smith if (tmp < 0) continue; 559d4bb536fSBarry Smith idxout[nf++] = tmp; 560d4bb536fSBarry Smith } 561d4bb536fSBarry Smith } else { 562d4bb536fSBarry Smith for (i=0; i<n; i++) { 563d4bb536fSBarry Smith if (idx[i] < 0) continue; 564d4bb536fSBarry Smith if (idx[i] < start) continue; 565d4bb536fSBarry Smith if (idx[i] > end) continue; 566d4bb536fSBarry Smith tmp = globals[idx[i] - start]; 567d4bb536fSBarry Smith if (tmp < 0) continue; 568d4bb536fSBarry Smith nf++; 569d4bb536fSBarry Smith } 570d4bb536fSBarry Smith } 571d4bb536fSBarry Smith if (nout) *nout = nf; 572d4bb536fSBarry Smith } 5733a40ed3dSBarry Smith PetscFunctionReturn(0); 574d4bb536fSBarry Smith } 57590f02eecSBarry Smith 5764a2ae208SSatish Balay #undef __FUNCT__ 5774a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingGetInfo" 57889d82c54SBarry Smith /*@C 57989d82c54SBarry Smith ISLocalToGlobalMappingGetInfo - Gets the neighbor information for each processor and 58089d82c54SBarry Smith each index shared by more than one processor 58189d82c54SBarry Smith 58289d82c54SBarry Smith Collective on ISLocalToGlobalMapping 58389d82c54SBarry Smith 58489d82c54SBarry Smith Input Parameters: 58589d82c54SBarry Smith . mapping - the mapping from local to global indexing 58689d82c54SBarry Smith 58789d82c54SBarry Smith Output Parameter: 58889d82c54SBarry Smith + nproc - number of processors that are connected to this one 58989d82c54SBarry Smith . proc - neighboring processors 59007b52d57SBarry Smith . numproc - number of indices for each subdomain (processor) 5913463a7baSJed Brown - indices - indices of nodes (in local numbering) shared with neighbors (sorted by global numbering) 59289d82c54SBarry Smith 59389d82c54SBarry Smith Level: advanced 59489d82c54SBarry Smith 595273d9f13SBarry Smith Concepts: mapping^local to global 59689d82c54SBarry Smith 5972cfcea29SBarry Smith Fortran Usage: 5982cfcea29SBarry Smith $ ISLocalToGlobalMpngGetInfoSize(ISLocalToGlobalMapping,PetscInt nproc,PetscInt numprocmax,ierr) followed by 5992cfcea29SBarry Smith $ ISLocalToGlobalMappingGetInfo(ISLocalToGlobalMapping,PetscInt nproc, PetscInt procs[nproc],PetscInt numprocs[nproc], 6002cfcea29SBarry Smith PetscInt indices[nproc][numprocmax],ierr) 6012cfcea29SBarry Smith There is no ISLocalToGlobalMappingRestoreInfo() in Fortran. You must make sure that procs[], numprocs[] and 6022cfcea29SBarry Smith indices[][] are large enough arrays, either by allocating them dynamically or defining static ones large enough. 6032cfcea29SBarry Smith 6042cfcea29SBarry Smith 60507b52d57SBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreateIS(), ISLocalToGlobalMappingCreate(), 60607b52d57SBarry Smith ISLocalToGlobalMappingRestoreInfo() 60789d82c54SBarry Smith @*/ 6087087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingGetInfo(ISLocalToGlobalMapping mapping,PetscInt *nproc,PetscInt *procs[],PetscInt *numprocs[],PetscInt **indices[]) 60989d82c54SBarry Smith { 6106849ba73SBarry Smith PetscErrorCode ierr; 61197f1f81fSBarry Smith PetscMPIInt size,rank,tag1,tag2,tag3,*len,*source,imdex; 61232dcc486SBarry Smith PetscInt i,n = mapping->n,Ng,ng,max = 0,*lindices = mapping->indices; 61332dcc486SBarry Smith PetscInt *nprocs,*owner,nsends,*sends,j,*starts,nmax,nrecvs,*recvs,proc; 61497f1f81fSBarry Smith PetscInt cnt,scale,*ownedsenders,*nownedsenders,rstart,nowned; 61532dcc486SBarry Smith PetscInt node,nownedm,nt,*sends2,nsends2,*starts2,*lens2,*dest,nrecvs2,*starts3,*recvs2,k,*bprocs,*tmp; 61632dcc486SBarry Smith PetscInt first_procs,first_numprocs,*first_indices; 61789d82c54SBarry Smith MPI_Request *recv_waits,*send_waits; 61830dcb7c9SBarry Smith MPI_Status recv_status,*send_status,*recv_statuses; 619ce94432eSBarry Smith MPI_Comm comm; 620ace3abfcSBarry Smith PetscBool debug = PETSC_FALSE; 62189d82c54SBarry Smith 62289d82c54SBarry Smith PetscFunctionBegin; 6230700a824SBarry Smith PetscValidHeaderSpecific(mapping,IS_LTOGM_CLASSID,1); 624ce94432eSBarry Smith ierr = PetscObjectGetComm((PetscObject)mapping,&comm);CHKERRQ(ierr); 62524cf384cSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 62624cf384cSBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 62724cf384cSBarry Smith if (size == 1) { 62824cf384cSBarry Smith *nproc = 0; 6290298fd71SBarry Smith *procs = NULL; 63032dcc486SBarry Smith ierr = PetscMalloc(sizeof(PetscInt),numprocs);CHKERRQ(ierr); 6311e2105dcSBarry Smith (*numprocs)[0] = 0; 63232dcc486SBarry Smith ierr = PetscMalloc(sizeof(PetscInt*),indices);CHKERRQ(ierr); 6330298fd71SBarry Smith (*indices)[0] = NULL; 63424cf384cSBarry Smith PetscFunctionReturn(0); 63524cf384cSBarry Smith } 63624cf384cSBarry Smith 6370298fd71SBarry Smith ierr = PetscOptionsGetBool(NULL,"-islocaltoglobalmappinggetinfo_debug",&debug,NULL);CHKERRQ(ierr); 63807b52d57SBarry Smith 6393677ff5aSBarry Smith /* 6403677ff5aSBarry Smith Notes on ISLocalToGlobalMappingGetInfo 6413677ff5aSBarry Smith 6423677ff5aSBarry Smith globally owned node - the nodes that have been assigned to this processor in global 6433677ff5aSBarry Smith numbering, just for this routine. 6443677ff5aSBarry Smith 6453677ff5aSBarry Smith nontrivial globally owned node - node assigned to this processor that is on a subdomain 6463677ff5aSBarry Smith boundary (i.e. is has more than one local owner) 6473677ff5aSBarry Smith 6483677ff5aSBarry Smith locally owned node - node that exists on this processors subdomain 6493677ff5aSBarry Smith 6503677ff5aSBarry Smith nontrivial locally owned node - node that is not in the interior (i.e. has more than one 6513677ff5aSBarry Smith local subdomain 6523677ff5aSBarry Smith */ 65324cf384cSBarry Smith ierr = PetscObjectGetNewTag((PetscObject)mapping,&tag1);CHKERRQ(ierr); 65424cf384cSBarry Smith ierr = PetscObjectGetNewTag((PetscObject)mapping,&tag2);CHKERRQ(ierr); 65524cf384cSBarry Smith ierr = PetscObjectGetNewTag((PetscObject)mapping,&tag3);CHKERRQ(ierr); 65689d82c54SBarry Smith 65789d82c54SBarry Smith for (i=0; i<n; i++) { 65889d82c54SBarry Smith if (lindices[i] > max) max = lindices[i]; 65989d82c54SBarry Smith } 66032dcc486SBarry Smith ierr = MPI_Allreduce(&max,&Ng,1,MPIU_INT,MPI_MAX,comm);CHKERRQ(ierr); 66178058e43SBarry Smith Ng++; 66289d82c54SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 66389d82c54SBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 664bc8ff85bSBarry Smith scale = Ng/size + 1; 665a2e34c3dSBarry Smith ng = scale; if (rank == size-1) ng = Ng - scale*(size-1); ng = PetscMax(1,ng); 666caba0dd0SBarry Smith rstart = scale*rank; 66789d82c54SBarry Smith 66889d82c54SBarry Smith /* determine ownership ranges of global indices */ 6697c334f02SBarry Smith ierr = PetscMalloc(2*size*sizeof(PetscInt),&nprocs);CHKERRQ(ierr); 67032dcc486SBarry Smith ierr = PetscMemzero(nprocs,2*size*sizeof(PetscInt));CHKERRQ(ierr); 67189d82c54SBarry Smith 67289d82c54SBarry Smith /* determine owners of each local node */ 6737c334f02SBarry Smith ierr = PetscMalloc(n*sizeof(PetscInt),&owner);CHKERRQ(ierr); 67489d82c54SBarry Smith for (i=0; i<n; i++) { 6753677ff5aSBarry Smith proc = lindices[i]/scale; /* processor that globally owns this index */ 67627c402fcSBarry Smith nprocs[2*proc+1] = 1; /* processor globally owns at least one of ours */ 6773677ff5aSBarry Smith owner[i] = proc; 67827c402fcSBarry Smith nprocs[2*proc]++; /* count of how many that processor globally owns of ours */ 67989d82c54SBarry Smith } 68027c402fcSBarry Smith nsends = 0; for (i=0; i<size; i++) nsends += nprocs[2*i+1]; 6811e2582c4SBarry Smith ierr = PetscInfo1(mapping,"Number of global owners for my local data %d\n",nsends);CHKERRQ(ierr); 68289d82c54SBarry Smith 68389d82c54SBarry Smith /* inform other processors of number of messages and max length*/ 68427c402fcSBarry Smith ierr = PetscMaxSum(comm,nprocs,&nmax,&nrecvs);CHKERRQ(ierr); 6851e2582c4SBarry Smith ierr = PetscInfo1(mapping,"Number of local owners for my global data %d\n",nrecvs);CHKERRQ(ierr); 68689d82c54SBarry Smith 68789d82c54SBarry Smith /* post receives for owned rows */ 68832dcc486SBarry Smith ierr = PetscMalloc((2*nrecvs+1)*(nmax+1)*sizeof(PetscInt),&recvs);CHKERRQ(ierr); 689b0a32e0cSBarry Smith ierr = PetscMalloc((nrecvs+1)*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr); 69089d82c54SBarry Smith for (i=0; i<nrecvs; i++) { 69132dcc486SBarry Smith ierr = MPI_Irecv(recvs+2*nmax*i,2*nmax,MPIU_INT,MPI_ANY_SOURCE,tag1,comm,recv_waits+i);CHKERRQ(ierr); 69289d82c54SBarry Smith } 69389d82c54SBarry Smith 69489d82c54SBarry Smith /* pack messages containing lists of local nodes to owners */ 69532dcc486SBarry Smith ierr = PetscMalloc((2*n+1)*sizeof(PetscInt),&sends);CHKERRQ(ierr); 69632dcc486SBarry Smith ierr = PetscMalloc((size+1)*sizeof(PetscInt),&starts);CHKERRQ(ierr); 69789d82c54SBarry Smith starts[0] = 0; 698f6e5521dSKarl Rupp for (i=1; i<size; i++) starts[i] = starts[i-1] + 2*nprocs[2*i-2]; 69989d82c54SBarry Smith for (i=0; i<n; i++) { 70089d82c54SBarry Smith sends[starts[owner[i]]++] = lindices[i]; 70130dcb7c9SBarry Smith sends[starts[owner[i]]++] = i; 70289d82c54SBarry Smith } 70389d82c54SBarry Smith ierr = PetscFree(owner);CHKERRQ(ierr); 70489d82c54SBarry Smith starts[0] = 0; 705f6e5521dSKarl Rupp for (i=1; i<size; i++) starts[i] = starts[i-1] + 2*nprocs[2*i-2]; 70689d82c54SBarry Smith 70789d82c54SBarry Smith /* send the messages */ 708b0a32e0cSBarry Smith ierr = PetscMalloc((nsends+1)*sizeof(MPI_Request),&send_waits);CHKERRQ(ierr); 70932dcc486SBarry Smith ierr = PetscMalloc((nsends+1)*sizeof(PetscInt),&dest);CHKERRQ(ierr); 71089d82c54SBarry Smith cnt = 0; 71189d82c54SBarry Smith for (i=0; i<size; i++) { 71227c402fcSBarry Smith if (nprocs[2*i]) { 71332dcc486SBarry Smith ierr = MPI_Isend(sends+starts[i],2*nprocs[2*i],MPIU_INT,i,tag1,comm,send_waits+cnt);CHKERRQ(ierr); 71430dcb7c9SBarry Smith dest[cnt] = i; 71589d82c54SBarry Smith cnt++; 71689d82c54SBarry Smith } 71789d82c54SBarry Smith } 71889d82c54SBarry Smith ierr = PetscFree(starts);CHKERRQ(ierr); 71989d82c54SBarry Smith 72089d82c54SBarry Smith /* wait on receives */ 72197f1f81fSBarry Smith ierr = PetscMalloc((nrecvs+1)*sizeof(PetscMPIInt),&source);CHKERRQ(ierr); 72297f1f81fSBarry Smith ierr = PetscMalloc((nrecvs+1)*sizeof(PetscMPIInt),&len);CHKERRQ(ierr); 72389d82c54SBarry Smith cnt = nrecvs; 72432dcc486SBarry Smith ierr = PetscMalloc((ng+1)*sizeof(PetscInt),&nownedsenders);CHKERRQ(ierr); 72532dcc486SBarry Smith ierr = PetscMemzero(nownedsenders,ng*sizeof(PetscInt));CHKERRQ(ierr); 72689d82c54SBarry Smith while (cnt) { 72789d82c54SBarry Smith ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr); 72889d82c54SBarry Smith /* unpack receives into our local space */ 72932dcc486SBarry Smith ierr = MPI_Get_count(&recv_status,MPIU_INT,&len[imdex]);CHKERRQ(ierr); 73089d82c54SBarry Smith source[imdex] = recv_status.MPI_SOURCE; 73130dcb7c9SBarry Smith len[imdex] = len[imdex]/2; 732caba0dd0SBarry Smith /* count how many local owners for each of my global owned indices */ 73330dcb7c9SBarry Smith for (i=0; i<len[imdex]; i++) nownedsenders[recvs[2*imdex*nmax+2*i]-rstart]++; 73489d82c54SBarry Smith cnt--; 73589d82c54SBarry Smith } 73689d82c54SBarry Smith ierr = PetscFree(recv_waits);CHKERRQ(ierr); 73789d82c54SBarry Smith 73830dcb7c9SBarry Smith /* count how many globally owned indices are on an edge multiplied by how many processors own them. */ 739bc8ff85bSBarry Smith nowned = 0; 740bc8ff85bSBarry Smith nownedm = 0; 741bc8ff85bSBarry Smith for (i=0; i<ng; i++) { 742bc8ff85bSBarry Smith if (nownedsenders[i] > 1) {nownedm += nownedsenders[i]; nowned++;} 743bc8ff85bSBarry Smith } 744bc8ff85bSBarry Smith 745bc8ff85bSBarry Smith /* create single array to contain rank of all local owners of each globally owned index */ 74632dcc486SBarry Smith ierr = PetscMalloc((nownedm+1)*sizeof(PetscInt),&ownedsenders);CHKERRQ(ierr); 74732dcc486SBarry Smith ierr = PetscMalloc((ng+1)*sizeof(PetscInt),&starts);CHKERRQ(ierr); 748bc8ff85bSBarry Smith starts[0] = 0; 749bc8ff85bSBarry Smith for (i=1; i<ng; i++) { 750bc8ff85bSBarry Smith if (nownedsenders[i-1] > 1) starts[i] = starts[i-1] + nownedsenders[i-1]; 751bc8ff85bSBarry Smith else starts[i] = starts[i-1]; 752bc8ff85bSBarry Smith } 753bc8ff85bSBarry Smith 75430dcb7c9SBarry Smith /* for each nontrival globally owned node list all arriving processors */ 755bc8ff85bSBarry Smith for (i=0; i<nrecvs; i++) { 756bc8ff85bSBarry Smith for (j=0; j<len[i]; j++) { 75730dcb7c9SBarry Smith node = recvs[2*i*nmax+2*j]-rstart; 758f6e5521dSKarl Rupp if (nownedsenders[node] > 1) ownedsenders[starts[node]++] = source[i]; 759bc8ff85bSBarry Smith } 760bc8ff85bSBarry Smith } 761bc8ff85bSBarry Smith 76207b52d57SBarry Smith if (debug) { /* ----------------------------------- */ 76330dcb7c9SBarry Smith starts[0] = 0; 76430dcb7c9SBarry Smith for (i=1; i<ng; i++) { 76530dcb7c9SBarry Smith if (nownedsenders[i-1] > 1) starts[i] = starts[i-1] + nownedsenders[i-1]; 76630dcb7c9SBarry Smith else starts[i] = starts[i-1]; 76730dcb7c9SBarry Smith } 76830dcb7c9SBarry Smith for (i=0; i<ng; i++) { 76930dcb7c9SBarry Smith if (nownedsenders[i] > 1) { 77030dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"[%d] global node %d local owner processors: ",rank,i+rstart);CHKERRQ(ierr); 77130dcb7c9SBarry Smith for (j=0; j<nownedsenders[i]; j++) { 77230dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"%d ",ownedsenders[starts[i]+j]);CHKERRQ(ierr); 77330dcb7c9SBarry Smith } 77430dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"\n");CHKERRQ(ierr); 77530dcb7c9SBarry Smith } 77630dcb7c9SBarry Smith } 77730dcb7c9SBarry Smith ierr = PetscSynchronizedFlush(comm);CHKERRQ(ierr); 77807b52d57SBarry Smith } /* ----------------------------------- */ 77930dcb7c9SBarry Smith 7803677ff5aSBarry Smith /* wait on original sends */ 7813a96401aSBarry Smith if (nsends) { 782b0a32e0cSBarry Smith ierr = PetscMalloc(nsends*sizeof(MPI_Status),&send_status);CHKERRQ(ierr); 7833a96401aSBarry Smith ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr); 7843a96401aSBarry Smith ierr = PetscFree(send_status);CHKERRQ(ierr); 7853a96401aSBarry Smith } 78689d82c54SBarry Smith ierr = PetscFree(send_waits);CHKERRQ(ierr); 7873a96401aSBarry Smith ierr = PetscFree(sends);CHKERRQ(ierr); 7883677ff5aSBarry Smith ierr = PetscFree(nprocs);CHKERRQ(ierr); 7893677ff5aSBarry Smith 7903677ff5aSBarry Smith /* pack messages to send back to local owners */ 79130dcb7c9SBarry Smith starts[0] = 0; 79230dcb7c9SBarry Smith for (i=1; i<ng; i++) { 79330dcb7c9SBarry Smith if (nownedsenders[i-1] > 1) starts[i] = starts[i-1] + nownedsenders[i-1]; 79430dcb7c9SBarry Smith else starts[i] = starts[i-1]; 79530dcb7c9SBarry Smith } 79630dcb7c9SBarry Smith nsends2 = nrecvs; 79732dcc486SBarry Smith ierr = PetscMalloc((nsends2+1)*sizeof(PetscInt),&nprocs);CHKERRQ(ierr); /* length of each message */ 79830dcb7c9SBarry Smith for (i=0; i<nrecvs; i++) { 79930dcb7c9SBarry Smith nprocs[i] = 1; 80030dcb7c9SBarry Smith for (j=0; j<len[i]; j++) { 80130dcb7c9SBarry Smith node = recvs[2*i*nmax+2*j]-rstart; 802f6e5521dSKarl Rupp if (nownedsenders[node] > 1) nprocs[i] += 2 + nownedsenders[node]; 80330dcb7c9SBarry Smith } 80430dcb7c9SBarry Smith } 805f6e5521dSKarl Rupp nt = 0; 806f6e5521dSKarl Rupp for (i=0; i<nsends2; i++) nt += nprocs[i]; 807f6e5521dSKarl Rupp 80832dcc486SBarry Smith ierr = PetscMalloc((nt+1)*sizeof(PetscInt),&sends2);CHKERRQ(ierr); 80932dcc486SBarry Smith ierr = PetscMalloc((nsends2+1)*sizeof(PetscInt),&starts2);CHKERRQ(ierr); 810f6e5521dSKarl Rupp 811f6e5521dSKarl Rupp starts2[0] = 0; 812f6e5521dSKarl Rupp for (i=1; i<nsends2; i++) starts2[i] = starts2[i-1] + nprocs[i-1]; 81330dcb7c9SBarry Smith /* 81430dcb7c9SBarry Smith Each message is 1 + nprocs[i] long, and consists of 81530dcb7c9SBarry Smith (0) the number of nodes being sent back 81630dcb7c9SBarry Smith (1) the local node number, 81730dcb7c9SBarry Smith (2) the number of processors sharing it, 81830dcb7c9SBarry Smith (3) the processors sharing it 81930dcb7c9SBarry Smith */ 82030dcb7c9SBarry Smith for (i=0; i<nsends2; i++) { 82130dcb7c9SBarry Smith cnt = 1; 82230dcb7c9SBarry Smith sends2[starts2[i]] = 0; 82330dcb7c9SBarry Smith for (j=0; j<len[i]; j++) { 82430dcb7c9SBarry Smith node = recvs[2*i*nmax+2*j]-rstart; 82530dcb7c9SBarry Smith if (nownedsenders[node] > 1) { 82630dcb7c9SBarry Smith sends2[starts2[i]]++; 82730dcb7c9SBarry Smith sends2[starts2[i]+cnt++] = recvs[2*i*nmax+2*j+1]; 82830dcb7c9SBarry Smith sends2[starts2[i]+cnt++] = nownedsenders[node]; 82932dcc486SBarry Smith ierr = PetscMemcpy(&sends2[starts2[i]+cnt],&ownedsenders[starts[node]],nownedsenders[node]*sizeof(PetscInt));CHKERRQ(ierr); 83030dcb7c9SBarry Smith cnt += nownedsenders[node]; 83130dcb7c9SBarry Smith } 83230dcb7c9SBarry Smith } 83330dcb7c9SBarry Smith } 83430dcb7c9SBarry Smith 83530dcb7c9SBarry Smith /* receive the message lengths */ 83630dcb7c9SBarry Smith nrecvs2 = nsends; 83732dcc486SBarry Smith ierr = PetscMalloc((nrecvs2+1)*sizeof(PetscInt),&lens2);CHKERRQ(ierr); 83832dcc486SBarry Smith ierr = PetscMalloc((nrecvs2+1)*sizeof(PetscInt),&starts3);CHKERRQ(ierr); 839d44834fbSBarry Smith ierr = PetscMalloc((nrecvs2+1)*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr); 84030dcb7c9SBarry Smith for (i=0; i<nrecvs2; i++) { 841d44834fbSBarry Smith ierr = MPI_Irecv(&lens2[i],1,MPIU_INT,dest[i],tag2,comm,recv_waits+i);CHKERRQ(ierr); 84230dcb7c9SBarry Smith } 843d44834fbSBarry Smith 8448a8e0b3aSBarry Smith /* send the message lengths */ 8458a8e0b3aSBarry Smith for (i=0; i<nsends2; i++) { 8468a8e0b3aSBarry Smith ierr = MPI_Send(&nprocs[i],1,MPIU_INT,source[i],tag2,comm);CHKERRQ(ierr); 8478a8e0b3aSBarry Smith } 8488a8e0b3aSBarry Smith 849d44834fbSBarry Smith /* wait on receives of lens */ 8500c468ba9SBarry Smith if (nrecvs2) { 8510c468ba9SBarry Smith ierr = PetscMalloc(nrecvs2*sizeof(MPI_Status),&recv_statuses);CHKERRQ(ierr); 852d44834fbSBarry Smith ierr = MPI_Waitall(nrecvs2,recv_waits,recv_statuses);CHKERRQ(ierr); 853d44834fbSBarry Smith ierr = PetscFree(recv_statuses);CHKERRQ(ierr); 8540c468ba9SBarry Smith } 855a2ea699eSBarry Smith ierr = PetscFree(recv_waits);CHKERRQ(ierr); 856d44834fbSBarry Smith 85730dcb7c9SBarry Smith starts3[0] = 0; 858d44834fbSBarry Smith nt = 0; 85930dcb7c9SBarry Smith for (i=0; i<nrecvs2-1; i++) { 86030dcb7c9SBarry Smith starts3[i+1] = starts3[i] + lens2[i]; 861d44834fbSBarry Smith nt += lens2[i]; 86230dcb7c9SBarry Smith } 86376466f69SStefano Zampini if (nrecvs2) nt += lens2[nrecvs2-1]; 864d44834fbSBarry Smith 86532dcc486SBarry Smith ierr = PetscMalloc((nt+1)*sizeof(PetscInt),&recvs2);CHKERRQ(ierr); 866b0a32e0cSBarry Smith ierr = PetscMalloc((nrecvs2+1)*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr); 86752b72c4aSBarry Smith for (i=0; i<nrecvs2; i++) { 86832dcc486SBarry Smith ierr = MPI_Irecv(recvs2+starts3[i],lens2[i],MPIU_INT,dest[i],tag3,comm,recv_waits+i);CHKERRQ(ierr); 86930dcb7c9SBarry Smith } 87030dcb7c9SBarry Smith 87130dcb7c9SBarry Smith /* send the messages */ 872b0a32e0cSBarry Smith ierr = PetscMalloc((nsends2+1)*sizeof(MPI_Request),&send_waits);CHKERRQ(ierr); 87330dcb7c9SBarry Smith for (i=0; i<nsends2; i++) { 87432dcc486SBarry Smith ierr = MPI_Isend(sends2+starts2[i],nprocs[i],MPIU_INT,source[i],tag3,comm,send_waits+i);CHKERRQ(ierr); 87530dcb7c9SBarry Smith } 87630dcb7c9SBarry Smith 87730dcb7c9SBarry Smith /* wait on receives */ 8780c468ba9SBarry Smith if (nrecvs2) { 8790c468ba9SBarry Smith ierr = PetscMalloc(nrecvs2*sizeof(MPI_Status),&recv_statuses);CHKERRQ(ierr); 88030dcb7c9SBarry Smith ierr = MPI_Waitall(nrecvs2,recv_waits,recv_statuses);CHKERRQ(ierr); 88130dcb7c9SBarry Smith ierr = PetscFree(recv_statuses);CHKERRQ(ierr); 8820c468ba9SBarry Smith } 88330dcb7c9SBarry Smith ierr = PetscFree(recv_waits);CHKERRQ(ierr); 88430dcb7c9SBarry Smith ierr = PetscFree(nprocs);CHKERRQ(ierr); 88530dcb7c9SBarry Smith 88607b52d57SBarry Smith if (debug) { /* ----------------------------------- */ 88730dcb7c9SBarry Smith cnt = 0; 88830dcb7c9SBarry Smith for (i=0; i<nrecvs2; i++) { 88930dcb7c9SBarry Smith nt = recvs2[cnt++]; 89030dcb7c9SBarry Smith for (j=0; j<nt; j++) { 89130dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"[%d] local node %d number of subdomains %d: ",rank,recvs2[cnt],recvs2[cnt+1]);CHKERRQ(ierr); 89230dcb7c9SBarry Smith for (k=0; k<recvs2[cnt+1]; k++) { 89330dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"%d ",recvs2[cnt+2+k]);CHKERRQ(ierr); 89430dcb7c9SBarry Smith } 89530dcb7c9SBarry Smith cnt += 2 + recvs2[cnt+1]; 89630dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"\n");CHKERRQ(ierr); 89730dcb7c9SBarry Smith } 89830dcb7c9SBarry Smith } 89930dcb7c9SBarry Smith ierr = PetscSynchronizedFlush(comm);CHKERRQ(ierr); 90007b52d57SBarry Smith } /* ----------------------------------- */ 90130dcb7c9SBarry Smith 90230dcb7c9SBarry Smith /* count number subdomains for each local node */ 90332dcc486SBarry Smith ierr = PetscMalloc(size*sizeof(PetscInt),&nprocs);CHKERRQ(ierr); 90432dcc486SBarry Smith ierr = PetscMemzero(nprocs,size*sizeof(PetscInt));CHKERRQ(ierr); 90530dcb7c9SBarry Smith cnt = 0; 90630dcb7c9SBarry Smith for (i=0; i<nrecvs2; i++) { 90730dcb7c9SBarry Smith nt = recvs2[cnt++]; 90830dcb7c9SBarry Smith for (j=0; j<nt; j++) { 909f6e5521dSKarl Rupp for (k=0; k<recvs2[cnt+1]; k++) nprocs[recvs2[cnt+2+k]]++; 91030dcb7c9SBarry Smith cnt += 2 + recvs2[cnt+1]; 91130dcb7c9SBarry Smith } 91230dcb7c9SBarry Smith } 91330dcb7c9SBarry Smith nt = 0; for (i=0; i<size; i++) nt += (nprocs[i] > 0); 91430dcb7c9SBarry Smith *nproc = nt; 91532dcc486SBarry Smith ierr = PetscMalloc((nt+1)*sizeof(PetscInt),procs);CHKERRQ(ierr); 91632dcc486SBarry Smith ierr = PetscMalloc((nt+1)*sizeof(PetscInt),numprocs);CHKERRQ(ierr); 91732dcc486SBarry Smith ierr = PetscMalloc((nt+1)*sizeof(PetscInt*),indices);CHKERRQ(ierr); 9180298fd71SBarry Smith for (i=0;i<nt+1;i++) (*indices)[i]=NULL; 91932dcc486SBarry Smith ierr = PetscMalloc(size*sizeof(PetscInt),&bprocs);CHKERRQ(ierr); 92030dcb7c9SBarry Smith cnt = 0; 92130dcb7c9SBarry Smith for (i=0; i<size; i++) { 92230dcb7c9SBarry Smith if (nprocs[i] > 0) { 92330dcb7c9SBarry Smith bprocs[i] = cnt; 92430dcb7c9SBarry Smith (*procs)[cnt] = i; 92530dcb7c9SBarry Smith (*numprocs)[cnt] = nprocs[i]; 92632dcc486SBarry Smith ierr = PetscMalloc(nprocs[i]*sizeof(PetscInt),&(*indices)[cnt]);CHKERRQ(ierr); 92730dcb7c9SBarry Smith cnt++; 92830dcb7c9SBarry Smith } 92930dcb7c9SBarry Smith } 93030dcb7c9SBarry Smith 93130dcb7c9SBarry Smith /* make the list of subdomains for each nontrivial local node */ 93232dcc486SBarry Smith ierr = PetscMemzero(*numprocs,nt*sizeof(PetscInt));CHKERRQ(ierr); 93330dcb7c9SBarry Smith cnt = 0; 93430dcb7c9SBarry Smith for (i=0; i<nrecvs2; i++) { 93530dcb7c9SBarry Smith nt = recvs2[cnt++]; 93630dcb7c9SBarry Smith for (j=0; j<nt; j++) { 937f6e5521dSKarl Rupp for (k=0; k<recvs2[cnt+1]; k++) (*indices)[bprocs[recvs2[cnt+2+k]]][(*numprocs)[bprocs[recvs2[cnt+2+k]]]++] = recvs2[cnt]; 93830dcb7c9SBarry Smith cnt += 2 + recvs2[cnt+1]; 93930dcb7c9SBarry Smith } 94030dcb7c9SBarry Smith } 94130dcb7c9SBarry Smith ierr = PetscFree(bprocs);CHKERRQ(ierr); 94207b52d57SBarry Smith ierr = PetscFree(recvs2);CHKERRQ(ierr); 94330dcb7c9SBarry Smith 94407b52d57SBarry Smith /* sort the node indexing by their global numbers */ 94507b52d57SBarry Smith nt = *nproc; 94607b52d57SBarry Smith for (i=0; i<nt; i++) { 94732dcc486SBarry Smith ierr = PetscMalloc(((*numprocs)[i])*sizeof(PetscInt),&tmp);CHKERRQ(ierr); 948f6e5521dSKarl Rupp for (j=0; j<(*numprocs)[i]; j++) tmp[j] = lindices[(*indices)[i][j]]; 94907b52d57SBarry Smith ierr = PetscSortIntWithArray((*numprocs)[i],tmp,(*indices)[i]);CHKERRQ(ierr); 95007b52d57SBarry Smith ierr = PetscFree(tmp);CHKERRQ(ierr); 95107b52d57SBarry Smith } 95207b52d57SBarry Smith 95307b52d57SBarry Smith if (debug) { /* ----------------------------------- */ 95430dcb7c9SBarry Smith nt = *nproc; 95530dcb7c9SBarry Smith for (i=0; i<nt; i++) { 95630dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"[%d] subdomain %d number of indices %d: ",rank,(*procs)[i],(*numprocs)[i]);CHKERRQ(ierr); 95730dcb7c9SBarry Smith for (j=0; j<(*numprocs)[i]; j++) { 95830dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"%d ",(*indices)[i][j]);CHKERRQ(ierr); 95930dcb7c9SBarry Smith } 96030dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"\n");CHKERRQ(ierr); 96130dcb7c9SBarry Smith } 96230dcb7c9SBarry Smith ierr = PetscSynchronizedFlush(comm);CHKERRQ(ierr); 96307b52d57SBarry Smith } /* ----------------------------------- */ 96430dcb7c9SBarry Smith 96530dcb7c9SBarry Smith /* wait on sends */ 96630dcb7c9SBarry Smith if (nsends2) { 967b0a32e0cSBarry Smith ierr = PetscMalloc(nsends2*sizeof(MPI_Status),&send_status);CHKERRQ(ierr); 96830dcb7c9SBarry Smith ierr = MPI_Waitall(nsends2,send_waits,send_status);CHKERRQ(ierr); 96930dcb7c9SBarry Smith ierr = PetscFree(send_status);CHKERRQ(ierr); 97030dcb7c9SBarry Smith } 97130dcb7c9SBarry Smith 97230dcb7c9SBarry Smith ierr = PetscFree(starts3);CHKERRQ(ierr); 97330dcb7c9SBarry Smith ierr = PetscFree(dest);CHKERRQ(ierr); 97430dcb7c9SBarry Smith ierr = PetscFree(send_waits);CHKERRQ(ierr); 9753677ff5aSBarry Smith 976bc8ff85bSBarry Smith ierr = PetscFree(nownedsenders);CHKERRQ(ierr); 977bc8ff85bSBarry Smith ierr = PetscFree(ownedsenders);CHKERRQ(ierr); 978bc8ff85bSBarry Smith ierr = PetscFree(starts);CHKERRQ(ierr); 97930dcb7c9SBarry Smith ierr = PetscFree(starts2);CHKERRQ(ierr); 98030dcb7c9SBarry Smith ierr = PetscFree(lens2);CHKERRQ(ierr); 98189d82c54SBarry Smith 98289d82c54SBarry Smith ierr = PetscFree(source);CHKERRQ(ierr); 98397f1f81fSBarry Smith ierr = PetscFree(len);CHKERRQ(ierr); 98489d82c54SBarry Smith ierr = PetscFree(recvs);CHKERRQ(ierr); 9853a96401aSBarry Smith ierr = PetscFree(nprocs);CHKERRQ(ierr); 98630dcb7c9SBarry Smith ierr = PetscFree(sends2);CHKERRQ(ierr); 98724cf384cSBarry Smith 98824cf384cSBarry Smith /* put the information about myself as the first entry in the list */ 98924cf384cSBarry Smith first_procs = (*procs)[0]; 99024cf384cSBarry Smith first_numprocs = (*numprocs)[0]; 99124cf384cSBarry Smith first_indices = (*indices)[0]; 99224cf384cSBarry Smith for (i=0; i<*nproc; i++) { 99324cf384cSBarry Smith if ((*procs)[i] == rank) { 99424cf384cSBarry Smith (*procs)[0] = (*procs)[i]; 99524cf384cSBarry Smith (*numprocs)[0] = (*numprocs)[i]; 99624cf384cSBarry Smith (*indices)[0] = (*indices)[i]; 99724cf384cSBarry Smith (*procs)[i] = first_procs; 99824cf384cSBarry Smith (*numprocs)[i] = first_numprocs; 99924cf384cSBarry Smith (*indices)[i] = first_indices; 100024cf384cSBarry Smith break; 100124cf384cSBarry Smith } 100224cf384cSBarry Smith } 100389d82c54SBarry Smith PetscFunctionReturn(0); 100489d82c54SBarry Smith } 100589d82c54SBarry Smith 10064a2ae208SSatish Balay #undef __FUNCT__ 10074a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingRestoreInfo" 100807b52d57SBarry Smith /*@C 100907b52d57SBarry Smith ISLocalToGlobalMappingRestoreInfo - Frees the memory allocated by ISLocalToGlobalMappingGetInfo() 101089d82c54SBarry Smith 101107b52d57SBarry Smith Collective on ISLocalToGlobalMapping 101207b52d57SBarry Smith 101307b52d57SBarry Smith Input Parameters: 101407b52d57SBarry Smith . mapping - the mapping from local to global indexing 101507b52d57SBarry Smith 101607b52d57SBarry Smith Output Parameter: 101707b52d57SBarry Smith + nproc - number of processors that are connected to this one 101807b52d57SBarry Smith . proc - neighboring processors 101907b52d57SBarry Smith . numproc - number of indices for each processor 102007b52d57SBarry Smith - indices - indices of local nodes shared with neighbor (sorted by global numbering) 102107b52d57SBarry Smith 102207b52d57SBarry Smith Level: advanced 102307b52d57SBarry Smith 102407b52d57SBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreateIS(), ISLocalToGlobalMappingCreate(), 102507b52d57SBarry Smith ISLocalToGlobalMappingGetInfo() 102607b52d57SBarry Smith @*/ 10277087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingRestoreInfo(ISLocalToGlobalMapping mapping,PetscInt *nproc,PetscInt *procs[],PetscInt *numprocs[],PetscInt **indices[]) 102807b52d57SBarry Smith { 10296849ba73SBarry Smith PetscErrorCode ierr; 103032dcc486SBarry Smith PetscInt i; 103107b52d57SBarry Smith 103207b52d57SBarry Smith PetscFunctionBegin; 103305b42c5fSBarry Smith ierr = PetscFree(*procs);CHKERRQ(ierr); 103405b42c5fSBarry Smith ierr = PetscFree(*numprocs);CHKERRQ(ierr); 103500ff320aSBarry Smith if (*indices) { 103605b42c5fSBarry Smith ierr = PetscFree((*indices)[0]);CHKERRQ(ierr); 103700ff320aSBarry Smith for (i=1; i<*nproc; i++) { 103805b42c5fSBarry Smith ierr = PetscFree((*indices)[i]);CHKERRQ(ierr); 103907b52d57SBarry Smith } 104007b52d57SBarry Smith ierr = PetscFree(*indices);CHKERRQ(ierr); 104124cf384cSBarry Smith } 104207b52d57SBarry Smith PetscFunctionReturn(0); 104307b52d57SBarry Smith } 104486994e45SJed Brown 104586994e45SJed Brown #undef __FUNCT__ 104686994e45SJed Brown #define __FUNCT__ "ISLocalToGlobalMappingGetIndices" 104786994e45SJed Brown /*@C 104886994e45SJed Brown ISLocalToGlobalMappingGetIndices - Get global indices for every local point 104986994e45SJed Brown 105086994e45SJed Brown Not Collective 105186994e45SJed Brown 105286994e45SJed Brown Input Arguments: 105386994e45SJed Brown . ltog - local to global mapping 105486994e45SJed Brown 105586994e45SJed Brown Output Arguments: 105686994e45SJed Brown . array - array of indices 105786994e45SJed Brown 105886994e45SJed Brown Level: advanced 105986994e45SJed Brown 106086994e45SJed Brown .seealso: ISLocalToGlobalMappingCreate(), ISLocalToGlobalMappingApply(), ISLocalToGlobalMappingRestoreIndices() 106186994e45SJed Brown @*/ 10627087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingGetIndices(ISLocalToGlobalMapping ltog,const PetscInt **array) 106386994e45SJed Brown { 106486994e45SJed Brown PetscFunctionBegin; 106586994e45SJed Brown PetscValidHeaderSpecific(ltog,IS_LTOGM_CLASSID,1); 106686994e45SJed Brown PetscValidPointer(array,2); 106786994e45SJed Brown *array = ltog->indices; 106886994e45SJed Brown PetscFunctionReturn(0); 106986994e45SJed Brown } 107086994e45SJed Brown 107186994e45SJed Brown #undef __FUNCT__ 107286994e45SJed Brown #define __FUNCT__ "ISLocalToGlobalMappingRestoreIndices" 107386994e45SJed Brown /*@C 107486994e45SJed Brown ISLocalToGlobalMappingRestoreIndices - Restore indices obtained with ISLocalToGlobalMappingRestoreIndices() 107586994e45SJed Brown 107686994e45SJed Brown Not Collective 107786994e45SJed Brown 107886994e45SJed Brown Input Arguments: 107986994e45SJed Brown + ltog - local to global mapping 108086994e45SJed Brown - array - array of indices 108186994e45SJed Brown 108286994e45SJed Brown Level: advanced 108386994e45SJed Brown 108486994e45SJed Brown .seealso: ISLocalToGlobalMappingCreate(), ISLocalToGlobalMappingApply(), ISLocalToGlobalMappingGetIndices() 108586994e45SJed Brown @*/ 10867087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingRestoreIndices(ISLocalToGlobalMapping ltog,const PetscInt **array) 108786994e45SJed Brown { 108886994e45SJed Brown PetscFunctionBegin; 108986994e45SJed Brown PetscValidHeaderSpecific(ltog,IS_LTOGM_CLASSID,1); 109086994e45SJed Brown PetscValidPointer(array,2); 109186994e45SJed Brown if (*array != ltog->indices) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_BADPTR,"Trying to return mismatched pointer"); 10920298fd71SBarry Smith *array = NULL; 109386994e45SJed Brown PetscFunctionReturn(0); 109486994e45SJed Brown } 1095f7efa3c7SJed Brown 1096f7efa3c7SJed Brown #undef __FUNCT__ 1097f7efa3c7SJed Brown #define __FUNCT__ "ISLocalToGlobalMappingConcatenate" 1098f7efa3c7SJed Brown /*@C 1099f7efa3c7SJed Brown ISLocalToGlobalMappingConcatenate - Create a new mapping that concatenates a list of mappings 1100f7efa3c7SJed Brown 1101f7efa3c7SJed Brown Not Collective 1102f7efa3c7SJed Brown 1103f7efa3c7SJed Brown Input Arguments: 1104f7efa3c7SJed Brown + comm - communicator for the new mapping, must contain the communicator of every mapping to concatenate 1105f7efa3c7SJed Brown . n - number of mappings to concatenate 1106f7efa3c7SJed Brown - ltogs - local to global mappings 1107f7efa3c7SJed Brown 1108f7efa3c7SJed Brown Output Arguments: 1109f7efa3c7SJed Brown . ltogcat - new mapping 1110f7efa3c7SJed Brown 1111f7efa3c7SJed Brown Level: advanced 1112f7efa3c7SJed Brown 1113f7efa3c7SJed Brown .seealso: ISLocalToGlobalMappingCreate() 1114f7efa3c7SJed Brown @*/ 1115f7efa3c7SJed Brown PetscErrorCode ISLocalToGlobalMappingConcatenate(MPI_Comm comm,PetscInt n,const ISLocalToGlobalMapping ltogs[],ISLocalToGlobalMapping *ltogcat) 1116f7efa3c7SJed Brown { 1117f7efa3c7SJed Brown PetscInt i,cnt,m,*idx; 1118f7efa3c7SJed Brown PetscErrorCode ierr; 1119f7efa3c7SJed Brown 1120f7efa3c7SJed Brown PetscFunctionBegin; 1121f7efa3c7SJed Brown if (n < 0) SETERRQ1(comm,PETSC_ERR_ARG_OUTOFRANGE,"Must have a non-negative number of mappings, given %D",n); 1122f7efa3c7SJed Brown if (n > 0) PetscValidPointer(ltogs,3); 1123f7efa3c7SJed Brown for (i=0; i<n; i++) PetscValidHeaderSpecific(ltogs[i],IS_LTOGM_CLASSID,3); 1124f7efa3c7SJed Brown PetscValidPointer(ltogcat,4); 1125f7efa3c7SJed Brown for (cnt=0,i=0; i<n; i++) { 1126f7efa3c7SJed Brown ierr = ISLocalToGlobalMappingGetSize(ltogs[i],&m);CHKERRQ(ierr); 1127f7efa3c7SJed Brown cnt += m; 1128f7efa3c7SJed Brown } 1129f7efa3c7SJed Brown ierr = PetscMalloc(cnt*sizeof(PetscInt),&idx);CHKERRQ(ierr); 1130f7efa3c7SJed Brown for (cnt=0,i=0; i<n; i++) { 1131f7efa3c7SJed Brown const PetscInt *subidx; 1132f7efa3c7SJed Brown ierr = ISLocalToGlobalMappingGetSize(ltogs[i],&m);CHKERRQ(ierr); 1133f7efa3c7SJed Brown ierr = ISLocalToGlobalMappingGetIndices(ltogs[i],&subidx);CHKERRQ(ierr); 1134f7efa3c7SJed Brown ierr = PetscMemcpy(&idx[cnt],subidx,m*sizeof(PetscInt));CHKERRQ(ierr); 1135f7efa3c7SJed Brown ierr = ISLocalToGlobalMappingRestoreIndices(ltogs[i],&subidx);CHKERRQ(ierr); 1136f7efa3c7SJed Brown cnt += m; 1137f7efa3c7SJed Brown } 1138f7efa3c7SJed Brown ierr = ISLocalToGlobalMappingCreate(comm,cnt,idx,PETSC_OWN_POINTER,ltogcat);CHKERRQ(ierr); 1139f7efa3c7SJed Brown PetscFunctionReturn(0); 1140f7efa3c7SJed Brown } 1141