12362add9SBarry Smith 2b45d2f2cSJed Brown #include <petsc-private/isimpl.h> /*I "petscis.h" I*/ 30c312b8eSJed Brown #include <petscsf.h> 4665c2dedSJed Brown #include <petscviewer.h> 52362add9SBarry Smith 67087cfbeSBarry Smith PetscClassId IS_LTOGM_CLASSID; 78e58c17dSMatthew Knepley 84a2ae208SSatish Balay #undef __FUNCT__ 9743c9b42SStefano Zampini #define __FUNCT__ "ISG2LMapApply" 10186d4ecdSBarry Smith PetscErrorCode ISG2LMapApply(ISLocalToGlobalMapping mapping,PetscInt n,const PetscInt in[],PetscInt out[]) 11186d4ecdSBarry Smith { 12186d4ecdSBarry Smith PetscErrorCode ierr; 13743c9b42SStefano Zampini PetscInt i,start,end; 14186d4ecdSBarry Smith 15186d4ecdSBarry Smith PetscFunctionBegin; 16186d4ecdSBarry Smith if (!mapping->globals) { 17186d4ecdSBarry Smith ierr = ISGlobalToLocalMappingApply(mapping,IS_GTOLM_MASK,0,0,0,0);CHKERRQ(ierr); 18186d4ecdSBarry Smith } 19743c9b42SStefano Zampini start = mapping->globalstart; 20743c9b42SStefano Zampini end = mapping->globalend; 21186d4ecdSBarry Smith for (i=0; i<n; i++) { 22186d4ecdSBarry Smith if (in[i] < 0) out[i] = in[i]; 23186d4ecdSBarry Smith else if (in[i] < start) out[i] = -1; 24186d4ecdSBarry Smith else if (in[i] > end) out[i] = -1; 25743c9b42SStefano Zampini else out[i] = mapping->globals[in[i] - start]; 26186d4ecdSBarry Smith } 27186d4ecdSBarry Smith PetscFunctionReturn(0); 28186d4ecdSBarry Smith } 29186d4ecdSBarry Smith 30186d4ecdSBarry Smith 31186d4ecdSBarry Smith #undef __FUNCT__ 324a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingGetSize" 333b9aefa3SBarry Smith /*@C 343b9aefa3SBarry Smith ISLocalToGlobalMappingGetSize - Gets the local size of a local to global mapping. 353b9aefa3SBarry Smith 363b9aefa3SBarry Smith Not Collective 373b9aefa3SBarry Smith 383b9aefa3SBarry Smith Input Parameter: 393b9aefa3SBarry Smith . ltog - local to global mapping 403b9aefa3SBarry Smith 413b9aefa3SBarry Smith Output Parameter: 423b9aefa3SBarry Smith . n - the number of entries in the local mapping 433b9aefa3SBarry Smith 443b9aefa3SBarry Smith Level: advanced 453b9aefa3SBarry Smith 46273d9f13SBarry Smith Concepts: mapping^local to global 473b9aefa3SBarry Smith 483b9aefa3SBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreate() 493b9aefa3SBarry Smith @*/ 507087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingGetSize(ISLocalToGlobalMapping mapping,PetscInt *n) 513b9aefa3SBarry Smith { 523b9aefa3SBarry Smith PetscFunctionBegin; 530700a824SBarry Smith PetscValidHeaderSpecific(mapping,IS_LTOGM_CLASSID,1); 544482741eSBarry Smith PetscValidIntPointer(n,2); 553b9aefa3SBarry Smith *n = mapping->n; 563b9aefa3SBarry Smith PetscFunctionReturn(0); 573b9aefa3SBarry Smith } 583b9aefa3SBarry Smith 594a2ae208SSatish Balay #undef __FUNCT__ 604a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingView" 615a5d4f66SBarry Smith /*@C 625a5d4f66SBarry Smith ISLocalToGlobalMappingView - View a local to global mapping 635a5d4f66SBarry Smith 64b9cd556bSLois Curfman McInnes Not Collective 65b9cd556bSLois Curfman McInnes 665a5d4f66SBarry Smith Input Parameters: 673b9aefa3SBarry Smith + ltog - local to global mapping 683b9aefa3SBarry Smith - viewer - viewer 695a5d4f66SBarry Smith 70a997ad1aSLois Curfman McInnes Level: advanced 71a997ad1aSLois Curfman McInnes 72273d9f13SBarry Smith Concepts: mapping^local to global 735a5d4f66SBarry Smith 745a5d4f66SBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreate() 755a5d4f66SBarry Smith @*/ 767087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingView(ISLocalToGlobalMapping mapping,PetscViewer viewer) 775a5d4f66SBarry Smith { 7832dcc486SBarry Smith PetscInt i; 7932dcc486SBarry Smith PetscMPIInt rank; 80ace3abfcSBarry Smith PetscBool iascii; 816849ba73SBarry Smith PetscErrorCode ierr; 825a5d4f66SBarry Smith 835a5d4f66SBarry Smith PetscFunctionBegin; 840700a824SBarry Smith PetscValidHeaderSpecific(mapping,IS_LTOGM_CLASSID,1); 853050cee2SBarry Smith if (!viewer) { 86ce94432eSBarry Smith ierr = PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject)mapping),&viewer);CHKERRQ(ierr); 873050cee2SBarry Smith } 880700a824SBarry Smith PetscValidHeaderSpecific(viewer,PETSC_VIEWER_CLASSID,2); 895a5d4f66SBarry Smith 90ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mapping),&rank);CHKERRQ(ierr); 91251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 9232077d6dSBarry Smith if (iascii) { 937b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_TRUE);CHKERRQ(ierr); 945a5d4f66SBarry Smith for (i=0; i<mapping->n; i++) { 95b0a32e0cSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] %d %d\n",rank,i,mapping->indices[i]);CHKERRQ(ierr); 966831982aSBarry Smith } 97b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 987b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_FALSE);CHKERRQ(ierr); 997b23a99aSBarry Smith } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Viewer type %s not supported for ISLocalToGlobalMapping",((PetscObject)viewer)->type_name); 1005a5d4f66SBarry Smith PetscFunctionReturn(0); 1015a5d4f66SBarry Smith } 1025a5d4f66SBarry Smith 1034a2ae208SSatish Balay #undef __FUNCT__ 1044a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingCreateIS" 1051f428162SBarry Smith /*@ 1062bdab257SBarry Smith ISLocalToGlobalMappingCreateIS - Creates a mapping between a local (0 to n) 1072bdab257SBarry Smith ordering and a global parallel ordering. 1082bdab257SBarry Smith 1090f5bd95cSBarry Smith Not collective 110b9cd556bSLois Curfman McInnes 111a997ad1aSLois Curfman McInnes Input Parameter: 1128c03b21aSDmitry Karpeev . is - index set containing the global numbers for each local number 1132bdab257SBarry Smith 114a997ad1aSLois Curfman McInnes Output Parameter: 1152bdab257SBarry Smith . mapping - new mapping data structure 1162bdab257SBarry Smith 117a997ad1aSLois Curfman McInnes Level: advanced 118a997ad1aSLois Curfman McInnes 119273d9f13SBarry Smith Concepts: mapping^local to global 1202bdab257SBarry Smith 1212bdab257SBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreate() 1222bdab257SBarry Smith @*/ 1237087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingCreateIS(IS is,ISLocalToGlobalMapping *mapping) 1242bdab257SBarry Smith { 1256849ba73SBarry Smith PetscErrorCode ierr; 126*3bbf0e92SBarry Smith PetscInt n,bs; 1275d0c19d7SBarry Smith const PetscInt *indices; 1282bdab257SBarry Smith MPI_Comm comm; 129*3bbf0e92SBarry Smith PetscBool isblock; 1303a40ed3dSBarry Smith 1313a40ed3dSBarry Smith PetscFunctionBegin; 1320700a824SBarry Smith PetscValidHeaderSpecific(is,IS_CLASSID,1); 1334482741eSBarry Smith PetscValidPointer(mapping,2); 1342bdab257SBarry Smith 1352bdab257SBarry Smith ierr = PetscObjectGetComm((PetscObject)is,&comm);CHKERRQ(ierr); 1363b9aefa3SBarry Smith ierr = ISGetLocalSize(is,&n);CHKERRQ(ierr); 1372bdab257SBarry Smith ierr = ISGetIndices(is,&indices);CHKERRQ(ierr); 138*3bbf0e92SBarry Smith ierr = PetscObjectTypeCompare((PetscObject)is,ISBLOCK,&isblock);CHKERRQ(ierr); 139*3bbf0e92SBarry Smith ierr = ISGetBlockSize(is,&bs);CHKERRQ(ierr); 140*3bbf0e92SBarry Smith if (!isblock || bs == 1) { 141d5ad8652SBarry Smith ierr = ISLocalToGlobalMappingCreate(comm,n,indices,PETSC_COPY_VALUES,mapping);CHKERRQ(ierr); 1422bdab257SBarry Smith ierr = ISRestoreIndices(is,&indices);CHKERRQ(ierr); 143*3bbf0e92SBarry Smith } else { 144*3bbf0e92SBarry Smith ierr = ISLocalToGlobalMappingCreate(comm,n,indices,PETSC_OWN_POINTER,mapping);CHKERRQ(ierr); 145*3bbf0e92SBarry Smith } 1463a40ed3dSBarry Smith PetscFunctionReturn(0); 1472bdab257SBarry Smith } 1485a5d4f66SBarry Smith 149a4d96a55SJed Brown #undef __FUNCT__ 150a4d96a55SJed Brown #define __FUNCT__ "ISLocalToGlobalMappingCreateSF" 151a4d96a55SJed Brown /*@C 152a4d96a55SJed Brown ISLocalToGlobalMappingCreateSF - Creates a mapping between a local (0 to n) 153a4d96a55SJed Brown ordering and a global parallel ordering. 154a4d96a55SJed Brown 155a4d96a55SJed Brown Collective 156a4d96a55SJed Brown 157a4d96a55SJed Brown Input Parameter: 158a4d96a55SJed Brown + sf - star forest mapping contiguous local indices to (rank, offset) 159a4d96a55SJed Brown - start - first global index on this process 160a4d96a55SJed Brown 161a4d96a55SJed Brown Output Parameter: 162a4d96a55SJed Brown . mapping - new mapping data structure 163a4d96a55SJed Brown 164a4d96a55SJed Brown Level: advanced 165a4d96a55SJed Brown 166a4d96a55SJed Brown Concepts: mapping^local to global 167a4d96a55SJed Brown 168a4d96a55SJed Brown .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreate(), ISLocalToGlobalMappingCreateIS() 169a4d96a55SJed Brown @*/ 170a4d96a55SJed Brown PetscErrorCode ISLocalToGlobalMappingCreateSF(PetscSF sf,PetscInt start,ISLocalToGlobalMapping *mapping) 171a4d96a55SJed Brown { 172a4d96a55SJed Brown PetscErrorCode ierr; 173a4d96a55SJed Brown PetscInt i,maxlocal,nroots,nleaves,*globals,*ltog; 174a4d96a55SJed Brown const PetscInt *ilocal; 175a4d96a55SJed Brown MPI_Comm comm; 176a4d96a55SJed Brown 177a4d96a55SJed Brown PetscFunctionBegin; 178a4d96a55SJed Brown PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 179a4d96a55SJed Brown PetscValidPointer(mapping,3); 180a4d96a55SJed Brown 181a4d96a55SJed Brown ierr = PetscObjectGetComm((PetscObject)sf,&comm);CHKERRQ(ierr); 1820298fd71SBarry Smith ierr = PetscSFGetGraph(sf,&nroots,&nleaves,&ilocal,NULL);CHKERRQ(ierr); 183f6e5521dSKarl Rupp if (ilocal) { 184f6e5521dSKarl Rupp for (i=0,maxlocal=0; i<nleaves; i++) maxlocal = PetscMax(maxlocal,ilocal[i]+1); 185f6e5521dSKarl Rupp } 186a4d96a55SJed Brown else maxlocal = nleaves; 187a4d96a55SJed Brown ierr = PetscMalloc(nroots*sizeof(PetscInt),&globals);CHKERRQ(ierr); 188a4d96a55SJed Brown ierr = PetscMalloc(maxlocal*sizeof(PetscInt),<og);CHKERRQ(ierr); 189a4d96a55SJed Brown for (i=0; i<nroots; i++) globals[i] = start + i; 190a4d96a55SJed Brown for (i=0; i<maxlocal; i++) ltog[i] = -1; 191a4d96a55SJed Brown ierr = PetscSFBcastBegin(sf,MPIU_INT,globals,ltog);CHKERRQ(ierr); 192a4d96a55SJed Brown ierr = PetscSFBcastEnd(sf,MPIU_INT,globals,ltog);CHKERRQ(ierr); 193a4d96a55SJed Brown ierr = ISLocalToGlobalMappingCreate(comm,maxlocal,ltog,PETSC_OWN_POINTER,mapping);CHKERRQ(ierr); 194a4d96a55SJed Brown ierr = PetscFree(globals);CHKERRQ(ierr); 195a4d96a55SJed Brown PetscFunctionReturn(0); 196a4d96a55SJed Brown } 197b46b645bSBarry Smith 1984a2ae208SSatish Balay #undef __FUNCT__ 1994a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingCreate" 200ba5bb76aSSatish Balay /*@ 20190f02eecSBarry Smith ISLocalToGlobalMappingCreate - Creates a mapping between a local (0 to n) 20290f02eecSBarry Smith ordering and a global parallel ordering. 2032362add9SBarry Smith 20489d82c54SBarry Smith Not Collective, but communicator may have more than one process 205b9cd556bSLois Curfman McInnes 2062362add9SBarry Smith Input Parameters: 20789d82c54SBarry Smith + comm - MPI communicator 20890f02eecSBarry Smith . n - the number of local elements 2099669e4d8SBarry Smith . indices - the global index for each local element, these do not need to be in increasing order (sorted) 210d5ad8652SBarry Smith - mode - see PetscCopyMode 2112362add9SBarry Smith 212a997ad1aSLois Curfman McInnes Output Parameter: 21390f02eecSBarry Smith . mapping - new mapping data structure 2142362add9SBarry Smith 215a997ad1aSLois Curfman McInnes Level: advanced 216a997ad1aSLois Curfman McInnes 217273d9f13SBarry Smith Concepts: mapping^local to global 2182362add9SBarry Smith 219d5ad8652SBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreateIS() 2202362add9SBarry Smith @*/ 2217087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingCreate(MPI_Comm cm,PetscInt n,const PetscInt indices[],PetscCopyMode mode,ISLocalToGlobalMapping *mapping) 2222362add9SBarry Smith { 2236849ba73SBarry Smith PetscErrorCode ierr; 22432dcc486SBarry Smith PetscInt *in; 225b46b645bSBarry Smith 226b46b645bSBarry Smith PetscFunctionBegin; 22773911063SBarry Smith if (n) PetscValidIntPointer(indices,3); 2284482741eSBarry Smith PetscValidPointer(mapping,4); 229b46b645bSBarry Smith 2300298fd71SBarry Smith *mapping = NULL; 231607a6623SBarry Smith ierr = ISInitializePackage();CHKERRQ(ierr); 2322362add9SBarry Smith 23367c2884eSBarry Smith ierr = PetscHeaderCreate(*mapping,_p_ISLocalToGlobalMapping,int,IS_LTOGM_CLASSID,"ISLocalToGlobalMapping","Local to global mapping","IS", 23452e6d16bSBarry Smith cm,ISLocalToGlobalMappingDestroy,ISLocalToGlobalMappingView);CHKERRQ(ierr); 235d4bb536fSBarry Smith (*mapping)->n = n; 236d4bb536fSBarry Smith /* 237d4bb536fSBarry Smith Do not create the global to local mapping. This is only created if 238d4bb536fSBarry Smith ISGlobalToLocalMapping() is called 239d4bb536fSBarry Smith */ 240d4bb536fSBarry Smith (*mapping)->globals = 0; 241d5ad8652SBarry Smith if (mode == PETSC_COPY_VALUES) { 242d5ad8652SBarry Smith ierr = PetscMalloc(n*sizeof(PetscInt),&in);CHKERRQ(ierr); 243d5ad8652SBarry Smith ierr = PetscMemcpy(in,indices,n*sizeof(PetscInt));CHKERRQ(ierr); 2443bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)*mapping,n*sizeof(PetscInt));CHKERRQ(ierr); 245d5ad8652SBarry Smith (*mapping)->indices = in; 246f6e5521dSKarl Rupp } else if (mode == PETSC_OWN_POINTER) (*mapping)->indices = (PetscInt*)indices; 247f6e5521dSKarl Rupp else SETERRQ(cm,PETSC_ERR_SUP,"Cannot currently use PETSC_USE_POINTER"); 2483a40ed3dSBarry Smith PetscFunctionReturn(0); 2492362add9SBarry Smith } 2502362add9SBarry Smith 2514a2ae208SSatish Balay #undef __FUNCT__ 2524a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingBlock" 253bce096a4SSatish Balay /*@ 254323b833fSBarry Smith ISLocalToGlobalMappingBlock - Creates a blocked index version of an 255323b833fSBarry Smith ISLocalToGlobalMapping that is appropriate for MatSetLocalToGlobalMappingBlock() 256323b833fSBarry Smith and VecSetLocalToGlobalMappingBlock(). 257323b833fSBarry Smith 258323b833fSBarry Smith Not Collective, but communicator may have more than one process 259323b833fSBarry Smith 260323b833fSBarry Smith Input Parameters: 261323b833fSBarry Smith + inmap - original point-wise mapping 262323b833fSBarry Smith - bs - block size 263323b833fSBarry Smith 264323b833fSBarry Smith Output Parameter: 26569eb54c3SBarry Smith . outmap - block based mapping; the indices are relative to BLOCKS, not individual vector or matrix entries. 266323b833fSBarry Smith 267323b833fSBarry Smith Level: advanced 268323b833fSBarry Smith 269323b833fSBarry Smith Concepts: mapping^local to global 270323b833fSBarry Smith 271323b833fSBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreate(), ISLocalToGlobalMappingCreateIS() 272323b833fSBarry Smith @*/ 2737087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingBlock(ISLocalToGlobalMapping inmap,PetscInt bs,ISLocalToGlobalMapping *outmap) 274323b833fSBarry Smith { 2756849ba73SBarry Smith PetscErrorCode ierr; 27632dcc486SBarry Smith PetscInt *ii,i,n; 277323b833fSBarry Smith 278323b833fSBarry Smith PetscFunctionBegin; 2790700a824SBarry Smith PetscValidHeaderSpecific(inmap,IS_LTOGM_CLASSID,1); 280b2beed0aSJed Brown PetscValidPointer(outmap,3); 281323b833fSBarry Smith if (bs > 1) { 282323b833fSBarry Smith n = inmap->n/bs; 283e32f2f54SBarry Smith if (n*bs != inmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Pointwise mapping length is not divisible by block size"); 28432dcc486SBarry Smith ierr = PetscMalloc(n*sizeof(PetscInt),&ii);CHKERRQ(ierr); 285f6e5521dSKarl Rupp for (i=0; i<n; i++) ii[i] = inmap->indices[bs*i]/bs; 286ce94432eSBarry Smith ierr = ISLocalToGlobalMappingCreate(PetscObjectComm((PetscObject)inmap),n,ii,PETSC_OWN_POINTER,outmap);CHKERRQ(ierr); 287323b833fSBarry Smith } else { 288323b833fSBarry Smith ierr = PetscObjectReference((PetscObject)inmap);CHKERRQ(ierr); 289c3122656SLisandro Dalcin *outmap = inmap; 290323b833fSBarry Smith } 291323b833fSBarry Smith PetscFunctionReturn(0); 292323b833fSBarry Smith } 293323b833fSBarry Smith 2944a2ae208SSatish Balay #undef __FUNCT__ 2958ab951edSJed Brown #define __FUNCT__ "ISLocalToGlobalMappingUnBlock" 296b2beed0aSJed Brown /*@ 297b2beed0aSJed Brown ISLocalToGlobalMappingUnBlock - Creates a scalar index version of a blocked 298b2beed0aSJed Brown ISLocalToGlobalMapping 299b2beed0aSJed Brown 300b2beed0aSJed Brown Not Collective, but communicator may have more than one process 301b2beed0aSJed Brown 302b2beed0aSJed Brown Input Parameter: 303b2beed0aSJed Brown + inmap - block based mapping; the indices are relative to BLOCKS, not individual vector or matrix entries. 304b2beed0aSJed Brown - bs - block size 305b2beed0aSJed Brown 306b2beed0aSJed Brown Output Parameter: 307b2beed0aSJed Brown . outmap - pointwise mapping 308b2beed0aSJed Brown 309b2beed0aSJed Brown Level: advanced 310b2beed0aSJed Brown 311b2beed0aSJed Brown Concepts: mapping^local to global 312b2beed0aSJed Brown 313b2beed0aSJed Brown .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreate(), ISLocalToGlobalMappingBlock() 314b2beed0aSJed Brown @*/ 3157087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingUnBlock(ISLocalToGlobalMapping inmap,PetscInt bs,ISLocalToGlobalMapping *outmap) 316b2beed0aSJed Brown { 317b2beed0aSJed Brown PetscErrorCode ierr; 318b2beed0aSJed Brown PetscInt *ii,i,n; 319b2beed0aSJed Brown 320b2beed0aSJed Brown PetscFunctionBegin; 321b2beed0aSJed Brown PetscValidHeaderSpecific(inmap,IS_LTOGM_CLASSID,1); 322b2beed0aSJed Brown PetscValidPointer(outmap,2); 323b2beed0aSJed Brown if (bs > 1) { 324b2beed0aSJed Brown n = inmap->n*bs; 325b2beed0aSJed Brown ierr = PetscMalloc(n*sizeof(PetscInt),&ii);CHKERRQ(ierr); 326f6e5521dSKarl Rupp for (i=0; i<n; i++) ii[i] = inmap->indices[i/bs]*bs + (i%bs); 327ce94432eSBarry Smith ierr = ISLocalToGlobalMappingCreate(PetscObjectComm((PetscObject)inmap),n,ii,PETSC_OWN_POINTER,outmap);CHKERRQ(ierr); 328b2beed0aSJed Brown } else { 329b2beed0aSJed Brown ierr = PetscObjectReference((PetscObject)inmap);CHKERRQ(ierr); 330b2beed0aSJed Brown *outmap = inmap; 331b2beed0aSJed Brown } 332b2beed0aSJed Brown PetscFunctionReturn(0); 333b2beed0aSJed Brown } 334b2beed0aSJed Brown 335b2beed0aSJed Brown #undef __FUNCT__ 3364a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingDestroy" 33790f02eecSBarry Smith /*@ 33890f02eecSBarry Smith ISLocalToGlobalMappingDestroy - Destroys a mapping between a local (0 to n) 33990f02eecSBarry Smith ordering and a global parallel ordering. 34090f02eecSBarry Smith 3410f5bd95cSBarry Smith Note Collective 342b9cd556bSLois Curfman McInnes 34390f02eecSBarry Smith Input Parameters: 34490f02eecSBarry Smith . mapping - mapping data structure 34590f02eecSBarry Smith 346a997ad1aSLois Curfman McInnes Level: advanced 347a997ad1aSLois Curfman McInnes 3483acfe500SLois Curfman McInnes .seealso: ISLocalToGlobalMappingCreate() 34990f02eecSBarry Smith @*/ 3506bf464f9SBarry Smith PetscErrorCode ISLocalToGlobalMappingDestroy(ISLocalToGlobalMapping *mapping) 35190f02eecSBarry Smith { 352dfbe8321SBarry Smith PetscErrorCode ierr; 3535fd66863SKarl Rupp 3543a40ed3dSBarry Smith PetscFunctionBegin; 3556bf464f9SBarry Smith if (!*mapping) PetscFunctionReturn(0); 3566bf464f9SBarry Smith PetscValidHeaderSpecific((*mapping),IS_LTOGM_CLASSID,1); 357997056adSBarry Smith if (--((PetscObject)(*mapping))->refct > 0) {*mapping = 0;PetscFunctionReturn(0);} 3586bf464f9SBarry Smith ierr = PetscFree((*mapping)->indices);CHKERRQ(ierr); 3596bf464f9SBarry Smith ierr = PetscFree((*mapping)->globals);CHKERRQ(ierr); 360d38fa0fbSBarry Smith ierr = PetscHeaderDestroy(mapping);CHKERRQ(ierr); 361992144d0SBarry Smith *mapping = 0; 3623a40ed3dSBarry Smith PetscFunctionReturn(0); 36390f02eecSBarry Smith } 36490f02eecSBarry Smith 3654a2ae208SSatish Balay #undef __FUNCT__ 3664a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingApplyIS" 36790f02eecSBarry Smith /*@ 3683acfe500SLois Curfman McInnes ISLocalToGlobalMappingApplyIS - Creates from an IS in the local numbering 3693acfe500SLois Curfman McInnes a new index set using the global numbering defined in an ISLocalToGlobalMapping 3703acfe500SLois Curfman McInnes context. 37190f02eecSBarry Smith 372b9cd556bSLois Curfman McInnes Not collective 373b9cd556bSLois Curfman McInnes 37490f02eecSBarry Smith Input Parameters: 375b9cd556bSLois Curfman McInnes + mapping - mapping between local and global numbering 376b9cd556bSLois Curfman McInnes - is - index set in local numbering 37790f02eecSBarry Smith 37890f02eecSBarry Smith Output Parameters: 37990f02eecSBarry Smith . newis - index set in global numbering 38090f02eecSBarry Smith 381a997ad1aSLois Curfman McInnes Level: advanced 382a997ad1aSLois Curfman McInnes 383273d9f13SBarry Smith Concepts: mapping^local to global 3843acfe500SLois Curfman McInnes 38590f02eecSBarry Smith .seealso: ISLocalToGlobalMappingApply(), ISLocalToGlobalMappingCreate(), 386d4bb536fSBarry Smith ISLocalToGlobalMappingDestroy(), ISGlobalToLocalMappingApply() 38790f02eecSBarry Smith @*/ 3887087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingApplyIS(ISLocalToGlobalMapping mapping,IS is,IS *newis) 38990f02eecSBarry Smith { 3906849ba73SBarry Smith PetscErrorCode ierr; 3915d0c19d7SBarry Smith PetscInt n,i,*idxmap,*idxout,Nmax = mapping->n; 3925d0c19d7SBarry Smith const PetscInt *idxin; 3933a40ed3dSBarry Smith 3943a40ed3dSBarry Smith PetscFunctionBegin; 3950700a824SBarry Smith PetscValidHeaderSpecific(mapping,IS_LTOGM_CLASSID,1); 3960700a824SBarry Smith PetscValidHeaderSpecific(is,IS_CLASSID,2); 3974482741eSBarry Smith PetscValidPointer(newis,3); 39890f02eecSBarry Smith 3993b9aefa3SBarry Smith ierr = ISGetLocalSize(is,&n);CHKERRQ(ierr); 40090f02eecSBarry Smith ierr = ISGetIndices(is,&idxin);CHKERRQ(ierr); 40190f02eecSBarry Smith idxmap = mapping->indices; 40290f02eecSBarry Smith 4037c334f02SBarry Smith ierr = PetscMalloc(n*sizeof(PetscInt),&idxout);CHKERRQ(ierr); 40490f02eecSBarry Smith for (i=0; i<n; i++) { 405e32f2f54SBarry Smith if (idxin[i] >= Nmax) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local index %d too large %d (max) at %d",idxin[i],Nmax-1,i); 40690f02eecSBarry Smith idxout[i] = idxmap[idxin[i]]; 40790f02eecSBarry Smith } 4083b9aefa3SBarry Smith ierr = ISRestoreIndices(is,&idxin);CHKERRQ(ierr); 40970b3c8c7SBarry Smith ierr = ISCreateGeneral(PETSC_COMM_SELF,n,idxout,PETSC_OWN_POINTER,newis);CHKERRQ(ierr); 4103a40ed3dSBarry Smith PetscFunctionReturn(0); 41190f02eecSBarry Smith } 41290f02eecSBarry Smith 413afcb2eb5SJed Brown #undef __FUNCT__ 414afcb2eb5SJed Brown #define __FUNCT__ "ISLocalToGlobalMappingApply" 415b89cb25eSSatish Balay /*@ 4163acfe500SLois Curfman McInnes ISLocalToGlobalMappingApply - Takes a list of integers in a local numbering 4173acfe500SLois Curfman McInnes and converts them to the global numbering. 41890f02eecSBarry Smith 419b9cd556bSLois Curfman McInnes Not collective 420b9cd556bSLois Curfman McInnes 421bb25748dSBarry Smith Input Parameters: 422b9cd556bSLois Curfman McInnes + mapping - the local to global mapping context 423bb25748dSBarry Smith . N - number of integers 424b9cd556bSLois Curfman McInnes - in - input indices in local numbering 425bb25748dSBarry Smith 426bb25748dSBarry Smith Output Parameter: 427bb25748dSBarry Smith . out - indices in global numbering 428bb25748dSBarry Smith 429b9cd556bSLois Curfman McInnes Notes: 430b9cd556bSLois Curfman McInnes The in and out array parameters may be identical. 431d4bb536fSBarry Smith 432a997ad1aSLois Curfman McInnes Level: advanced 433a997ad1aSLois Curfman McInnes 434bb25748dSBarry Smith .seealso: ISLocalToGlobalMappingCreate(),ISLocalToGlobalMappingDestroy(), 4350752156aSBarry Smith ISLocalToGlobalMappingApplyIS(),AOCreateBasic(),AOApplicationToPetsc(), 436d4bb536fSBarry Smith AOPetscToApplication(), ISGlobalToLocalMappingApply() 437bb25748dSBarry Smith 438273d9f13SBarry Smith Concepts: mapping^local to global 439afcb2eb5SJed Brown @*/ 440afcb2eb5SJed Brown PetscErrorCode ISLocalToGlobalMappingApply(ISLocalToGlobalMapping mapping,PetscInt N,const PetscInt in[],PetscInt out[]) 441afcb2eb5SJed Brown { 442afcb2eb5SJed Brown PetscInt i,Nmax = mapping->n; 443afcb2eb5SJed Brown const PetscInt *idx = mapping->indices; 444d4bb536fSBarry Smith 445afcb2eb5SJed Brown PetscFunctionBegin; 446afcb2eb5SJed Brown for (i=0; i<N; i++) { 447afcb2eb5SJed Brown if (in[i] < 0) { 448afcb2eb5SJed Brown out[i] = in[i]; 449afcb2eb5SJed Brown continue; 450afcb2eb5SJed Brown } 451afcb2eb5SJed Brown if (in[i] >= Nmax) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local index %D too large %D (max) at %D",in[i],Nmax,i); 452afcb2eb5SJed Brown out[i] = idx[in[i]]; 453afcb2eb5SJed Brown } 454afcb2eb5SJed Brown PetscFunctionReturn(0); 455afcb2eb5SJed Brown } 456d4bb536fSBarry Smith 457d4bb536fSBarry Smith /* -----------------------------------------------------------------------------------------*/ 458d4bb536fSBarry Smith 4594a2ae208SSatish Balay #undef __FUNCT__ 4604a2ae208SSatish Balay #define __FUNCT__ "ISGlobalToLocalMappingSetUp_Private" 461d4bb536fSBarry Smith /* 462d4bb536fSBarry Smith Creates the global fields in the ISLocalToGlobalMapping structure 463d4bb536fSBarry Smith */ 4646849ba73SBarry Smith static PetscErrorCode ISGlobalToLocalMappingSetUp_Private(ISLocalToGlobalMapping mapping) 465d4bb536fSBarry Smith { 4666849ba73SBarry Smith PetscErrorCode ierr; 46732dcc486SBarry Smith PetscInt i,*idx = mapping->indices,n = mapping->n,end,start,*globals; 468d4bb536fSBarry Smith 4693a40ed3dSBarry Smith PetscFunctionBegin; 470d4bb536fSBarry Smith end = 0; 471ec268f7cSJed Brown start = PETSC_MAX_INT; 472d4bb536fSBarry Smith 473d4bb536fSBarry Smith for (i=0; i<n; i++) { 474d4bb536fSBarry Smith if (idx[i] < 0) continue; 475d4bb536fSBarry Smith if (idx[i] < start) start = idx[i]; 476d4bb536fSBarry Smith if (idx[i] > end) end = idx[i]; 477d4bb536fSBarry Smith } 478d4bb536fSBarry Smith if (start > end) {start = 0; end = -1;} 479d4bb536fSBarry Smith mapping->globalstart = start; 480d4bb536fSBarry Smith mapping->globalend = end; 481d4bb536fSBarry Smith 48232dcc486SBarry Smith ierr = PetscMalloc((end-start+2)*sizeof(PetscInt),&globals);CHKERRQ(ierr); 483b0a32e0cSBarry Smith mapping->globals = globals; 484f6e5521dSKarl Rupp for (i=0; i<end-start+1; i++) globals[i] = -1; 485d4bb536fSBarry Smith for (i=0; i<n; i++) { 486d4bb536fSBarry Smith if (idx[i] < 0) continue; 487d4bb536fSBarry Smith globals[idx[i] - start] = i; 488d4bb536fSBarry Smith } 489d4bb536fSBarry Smith 4903bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)mapping,(end-start+1)*sizeof(PetscInt));CHKERRQ(ierr); 4913a40ed3dSBarry Smith PetscFunctionReturn(0); 492d4bb536fSBarry Smith } 493d4bb536fSBarry Smith 4944a2ae208SSatish Balay #undef __FUNCT__ 4954a2ae208SSatish Balay #define __FUNCT__ "ISGlobalToLocalMappingApply" 496d4bb536fSBarry Smith /*@ 497a997ad1aSLois Curfman McInnes ISGlobalToLocalMappingApply - Provides the local numbering for a list of integers 498a997ad1aSLois Curfman McInnes specified with a global numbering. 499d4bb536fSBarry Smith 500b9cd556bSLois Curfman McInnes Not collective 501b9cd556bSLois Curfman McInnes 502d4bb536fSBarry Smith Input Parameters: 503b9cd556bSLois Curfman McInnes + mapping - mapping between local and global numbering 504d4bb536fSBarry Smith . type - IS_GTOLM_MASK - replaces global indices with no local value with -1 505d4bb536fSBarry Smith IS_GTOLM_DROP - drops the indices with no local value from the output list 506d4bb536fSBarry Smith . n - number of global indices to map 507b9cd556bSLois Curfman McInnes - idx - global indices to map 508d4bb536fSBarry Smith 509d4bb536fSBarry Smith Output Parameters: 510b9cd556bSLois Curfman McInnes + nout - number of indices in output array (if type == IS_GTOLM_MASK then nout = n) 511b9cd556bSLois Curfman McInnes - idxout - local index of each global index, one must pass in an array long enough 512e182c471SBarry Smith to hold all the indices. You can call ISGlobalToLocalMappingApply() with 5130298fd71SBarry Smith idxout == NULL to determine the required length (returned in nout) 514e182c471SBarry Smith and then allocate the required space and call ISGlobalToLocalMappingApply() 515e182c471SBarry Smith a second time to set the values. 516d4bb536fSBarry Smith 517b9cd556bSLois Curfman McInnes Notes: 5180298fd71SBarry Smith Either nout or idxout may be NULL. idx and idxout may be identical. 519d4bb536fSBarry Smith 5200f5bd95cSBarry Smith This is not scalable in memory usage. Each processor requires O(Nglobal) size 5210f5bd95cSBarry Smith array to compute these. 5220f5bd95cSBarry Smith 523a997ad1aSLois Curfman McInnes Level: advanced 524a997ad1aSLois Curfman McInnes 52532fd6b96SBarry Smith Developer Note: The manual page states that idx and idxout may be identical but the calling 52632fd6b96SBarry Smith sequence declares idx as const so it cannot be the same as idxout. 52732fd6b96SBarry Smith 528273d9f13SBarry Smith Concepts: mapping^global to local 529d4bb536fSBarry Smith 530d4bb536fSBarry Smith .seealso: ISLocalToGlobalMappingApply(), ISLocalToGlobalMappingCreate(), 531d4bb536fSBarry Smith ISLocalToGlobalMappingDestroy() 532d4bb536fSBarry Smith @*/ 5337087cfbeSBarry Smith PetscErrorCode ISGlobalToLocalMappingApply(ISLocalToGlobalMapping mapping,ISGlobalToLocalMappingType type, 53432dcc486SBarry Smith PetscInt n,const PetscInt idx[],PetscInt *nout,PetscInt idxout[]) 535d4bb536fSBarry Smith { 53632dcc486SBarry Smith PetscInt i,*globals,nf = 0,tmp,start,end; 5376849ba73SBarry Smith PetscErrorCode ierr; 538d4bb536fSBarry Smith 5393a40ed3dSBarry Smith PetscFunctionBegin; 5400700a824SBarry Smith PetscValidHeaderSpecific(mapping,IS_LTOGM_CLASSID,1); 541d4bb536fSBarry Smith if (!mapping->globals) { 542d4bb536fSBarry Smith ierr = ISGlobalToLocalMappingSetUp_Private(mapping);CHKERRQ(ierr); 543d4bb536fSBarry Smith } 544d4bb536fSBarry Smith globals = mapping->globals; 545d4bb536fSBarry Smith start = mapping->globalstart; 546d4bb536fSBarry Smith end = mapping->globalend; 547d4bb536fSBarry Smith 548d4bb536fSBarry Smith if (type == IS_GTOLM_MASK) { 549d4bb536fSBarry Smith if (idxout) { 550d4bb536fSBarry Smith for (i=0; i<n; i++) { 551d4bb536fSBarry Smith if (idx[i] < 0) idxout[i] = idx[i]; 552d4bb536fSBarry Smith else if (idx[i] < start) idxout[i] = -1; 553d4bb536fSBarry Smith else if (idx[i] > end) idxout[i] = -1; 554d4bb536fSBarry Smith else idxout[i] = globals[idx[i] - start]; 555d4bb536fSBarry Smith } 556d4bb536fSBarry Smith } 557d4bb536fSBarry Smith if (nout) *nout = n; 558d4bb536fSBarry Smith } else { 559d4bb536fSBarry Smith if (idxout) { 560d4bb536fSBarry Smith for (i=0; i<n; i++) { 561d4bb536fSBarry Smith if (idx[i] < 0) continue; 562d4bb536fSBarry Smith if (idx[i] < start) continue; 563d4bb536fSBarry Smith if (idx[i] > end) continue; 564d4bb536fSBarry Smith tmp = globals[idx[i] - start]; 565d4bb536fSBarry Smith if (tmp < 0) continue; 566d4bb536fSBarry Smith idxout[nf++] = tmp; 567d4bb536fSBarry Smith } 568d4bb536fSBarry Smith } else { 569d4bb536fSBarry Smith for (i=0; i<n; i++) { 570d4bb536fSBarry Smith if (idx[i] < 0) continue; 571d4bb536fSBarry Smith if (idx[i] < start) continue; 572d4bb536fSBarry Smith if (idx[i] > end) continue; 573d4bb536fSBarry Smith tmp = globals[idx[i] - start]; 574d4bb536fSBarry Smith if (tmp < 0) continue; 575d4bb536fSBarry Smith nf++; 576d4bb536fSBarry Smith } 577d4bb536fSBarry Smith } 578d4bb536fSBarry Smith if (nout) *nout = nf; 579d4bb536fSBarry Smith } 5803a40ed3dSBarry Smith PetscFunctionReturn(0); 581d4bb536fSBarry Smith } 58290f02eecSBarry Smith 5834a2ae208SSatish Balay #undef __FUNCT__ 5844a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingGetInfo" 58589d82c54SBarry Smith /*@C 58689d82c54SBarry Smith ISLocalToGlobalMappingGetInfo - Gets the neighbor information for each processor and 58789d82c54SBarry Smith each index shared by more than one processor 58889d82c54SBarry Smith 58989d82c54SBarry Smith Collective on ISLocalToGlobalMapping 59089d82c54SBarry Smith 59189d82c54SBarry Smith Input Parameters: 59289d82c54SBarry Smith . mapping - the mapping from local to global indexing 59389d82c54SBarry Smith 59489d82c54SBarry Smith Output Parameter: 59589d82c54SBarry Smith + nproc - number of processors that are connected to this one 59689d82c54SBarry Smith . proc - neighboring processors 59707b52d57SBarry Smith . numproc - number of indices for each subdomain (processor) 5983463a7baSJed Brown - indices - indices of nodes (in local numbering) shared with neighbors (sorted by global numbering) 59989d82c54SBarry Smith 60089d82c54SBarry Smith Level: advanced 60189d82c54SBarry Smith 602273d9f13SBarry Smith Concepts: mapping^local to global 60389d82c54SBarry Smith 6042cfcea29SBarry Smith Fortran Usage: 6052cfcea29SBarry Smith $ ISLocalToGlobalMpngGetInfoSize(ISLocalToGlobalMapping,PetscInt nproc,PetscInt numprocmax,ierr) followed by 6062cfcea29SBarry Smith $ ISLocalToGlobalMappingGetInfo(ISLocalToGlobalMapping,PetscInt nproc, PetscInt procs[nproc],PetscInt numprocs[nproc], 6072cfcea29SBarry Smith PetscInt indices[nproc][numprocmax],ierr) 6082cfcea29SBarry Smith There is no ISLocalToGlobalMappingRestoreInfo() in Fortran. You must make sure that procs[], numprocs[] and 6092cfcea29SBarry Smith indices[][] are large enough arrays, either by allocating them dynamically or defining static ones large enough. 6102cfcea29SBarry Smith 6112cfcea29SBarry Smith 61207b52d57SBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreateIS(), ISLocalToGlobalMappingCreate(), 61307b52d57SBarry Smith ISLocalToGlobalMappingRestoreInfo() 61489d82c54SBarry Smith @*/ 6157087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingGetInfo(ISLocalToGlobalMapping mapping,PetscInt *nproc,PetscInt *procs[],PetscInt *numprocs[],PetscInt **indices[]) 61689d82c54SBarry Smith { 6176849ba73SBarry Smith PetscErrorCode ierr; 61897f1f81fSBarry Smith PetscMPIInt size,rank,tag1,tag2,tag3,*len,*source,imdex; 61932dcc486SBarry Smith PetscInt i,n = mapping->n,Ng,ng,max = 0,*lindices = mapping->indices; 62032dcc486SBarry Smith PetscInt *nprocs,*owner,nsends,*sends,j,*starts,nmax,nrecvs,*recvs,proc; 62197f1f81fSBarry Smith PetscInt cnt,scale,*ownedsenders,*nownedsenders,rstart,nowned; 62232dcc486SBarry Smith PetscInt node,nownedm,nt,*sends2,nsends2,*starts2,*lens2,*dest,nrecvs2,*starts3,*recvs2,k,*bprocs,*tmp; 62332dcc486SBarry Smith PetscInt first_procs,first_numprocs,*first_indices; 62489d82c54SBarry Smith MPI_Request *recv_waits,*send_waits; 62530dcb7c9SBarry Smith MPI_Status recv_status,*send_status,*recv_statuses; 626ce94432eSBarry Smith MPI_Comm comm; 627ace3abfcSBarry Smith PetscBool debug = PETSC_FALSE; 62889d82c54SBarry Smith 62989d82c54SBarry Smith PetscFunctionBegin; 6300700a824SBarry Smith PetscValidHeaderSpecific(mapping,IS_LTOGM_CLASSID,1); 631ce94432eSBarry Smith ierr = PetscObjectGetComm((PetscObject)mapping,&comm);CHKERRQ(ierr); 63224cf384cSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 63324cf384cSBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 63424cf384cSBarry Smith if (size == 1) { 63524cf384cSBarry Smith *nproc = 0; 6360298fd71SBarry Smith *procs = NULL; 63732dcc486SBarry Smith ierr = PetscMalloc(sizeof(PetscInt),numprocs);CHKERRQ(ierr); 6381e2105dcSBarry Smith (*numprocs)[0] = 0; 63932dcc486SBarry Smith ierr = PetscMalloc(sizeof(PetscInt*),indices);CHKERRQ(ierr); 6400298fd71SBarry Smith (*indices)[0] = NULL; 64124cf384cSBarry Smith PetscFunctionReturn(0); 64224cf384cSBarry Smith } 64324cf384cSBarry Smith 6440298fd71SBarry Smith ierr = PetscOptionsGetBool(NULL,"-islocaltoglobalmappinggetinfo_debug",&debug,NULL);CHKERRQ(ierr); 64507b52d57SBarry Smith 6463677ff5aSBarry Smith /* 6473677ff5aSBarry Smith Notes on ISLocalToGlobalMappingGetInfo 6483677ff5aSBarry Smith 6493677ff5aSBarry Smith globally owned node - the nodes that have been assigned to this processor in global 6503677ff5aSBarry Smith numbering, just for this routine. 6513677ff5aSBarry Smith 6523677ff5aSBarry Smith nontrivial globally owned node - node assigned to this processor that is on a subdomain 6533677ff5aSBarry Smith boundary (i.e. is has more than one local owner) 6543677ff5aSBarry Smith 6553677ff5aSBarry Smith locally owned node - node that exists on this processors subdomain 6563677ff5aSBarry Smith 6573677ff5aSBarry Smith nontrivial locally owned node - node that is not in the interior (i.e. has more than one 6583677ff5aSBarry Smith local subdomain 6593677ff5aSBarry Smith */ 66024cf384cSBarry Smith ierr = PetscObjectGetNewTag((PetscObject)mapping,&tag1);CHKERRQ(ierr); 66124cf384cSBarry Smith ierr = PetscObjectGetNewTag((PetscObject)mapping,&tag2);CHKERRQ(ierr); 66224cf384cSBarry Smith ierr = PetscObjectGetNewTag((PetscObject)mapping,&tag3);CHKERRQ(ierr); 66389d82c54SBarry Smith 66489d82c54SBarry Smith for (i=0; i<n; i++) { 66589d82c54SBarry Smith if (lindices[i] > max) max = lindices[i]; 66689d82c54SBarry Smith } 66732dcc486SBarry Smith ierr = MPI_Allreduce(&max,&Ng,1,MPIU_INT,MPI_MAX,comm);CHKERRQ(ierr); 66878058e43SBarry Smith Ng++; 66989d82c54SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 67089d82c54SBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 671bc8ff85bSBarry Smith scale = Ng/size + 1; 672a2e34c3dSBarry Smith ng = scale; if (rank == size-1) ng = Ng - scale*(size-1); ng = PetscMax(1,ng); 673caba0dd0SBarry Smith rstart = scale*rank; 67489d82c54SBarry Smith 67589d82c54SBarry Smith /* determine ownership ranges of global indices */ 6767c334f02SBarry Smith ierr = PetscMalloc(2*size*sizeof(PetscInt),&nprocs);CHKERRQ(ierr); 67732dcc486SBarry Smith ierr = PetscMemzero(nprocs,2*size*sizeof(PetscInt));CHKERRQ(ierr); 67889d82c54SBarry Smith 67989d82c54SBarry Smith /* determine owners of each local node */ 6807c334f02SBarry Smith ierr = PetscMalloc(n*sizeof(PetscInt),&owner);CHKERRQ(ierr); 68189d82c54SBarry Smith for (i=0; i<n; i++) { 6823677ff5aSBarry Smith proc = lindices[i]/scale; /* processor that globally owns this index */ 68327c402fcSBarry Smith nprocs[2*proc+1] = 1; /* processor globally owns at least one of ours */ 6843677ff5aSBarry Smith owner[i] = proc; 68527c402fcSBarry Smith nprocs[2*proc]++; /* count of how many that processor globally owns of ours */ 68689d82c54SBarry Smith } 68727c402fcSBarry Smith nsends = 0; for (i=0; i<size; i++) nsends += nprocs[2*i+1]; 6881e2582c4SBarry Smith ierr = PetscInfo1(mapping,"Number of global owners for my local data %d\n",nsends);CHKERRQ(ierr); 68989d82c54SBarry Smith 69089d82c54SBarry Smith /* inform other processors of number of messages and max length*/ 69127c402fcSBarry Smith ierr = PetscMaxSum(comm,nprocs,&nmax,&nrecvs);CHKERRQ(ierr); 6921e2582c4SBarry Smith ierr = PetscInfo1(mapping,"Number of local owners for my global data %d\n",nrecvs);CHKERRQ(ierr); 69389d82c54SBarry Smith 69489d82c54SBarry Smith /* post receives for owned rows */ 69532dcc486SBarry Smith ierr = PetscMalloc((2*nrecvs+1)*(nmax+1)*sizeof(PetscInt),&recvs);CHKERRQ(ierr); 696b0a32e0cSBarry Smith ierr = PetscMalloc((nrecvs+1)*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr); 69789d82c54SBarry Smith for (i=0; i<nrecvs; i++) { 69832dcc486SBarry Smith ierr = MPI_Irecv(recvs+2*nmax*i,2*nmax,MPIU_INT,MPI_ANY_SOURCE,tag1,comm,recv_waits+i);CHKERRQ(ierr); 69989d82c54SBarry Smith } 70089d82c54SBarry Smith 70189d82c54SBarry Smith /* pack messages containing lists of local nodes to owners */ 70232dcc486SBarry Smith ierr = PetscMalloc((2*n+1)*sizeof(PetscInt),&sends);CHKERRQ(ierr); 70332dcc486SBarry Smith ierr = PetscMalloc((size+1)*sizeof(PetscInt),&starts);CHKERRQ(ierr); 70489d82c54SBarry Smith starts[0] = 0; 705f6e5521dSKarl Rupp for (i=1; i<size; i++) starts[i] = starts[i-1] + 2*nprocs[2*i-2]; 70689d82c54SBarry Smith for (i=0; i<n; i++) { 70789d82c54SBarry Smith sends[starts[owner[i]]++] = lindices[i]; 70830dcb7c9SBarry Smith sends[starts[owner[i]]++] = i; 70989d82c54SBarry Smith } 71089d82c54SBarry Smith ierr = PetscFree(owner);CHKERRQ(ierr); 71189d82c54SBarry Smith starts[0] = 0; 712f6e5521dSKarl Rupp for (i=1; i<size; i++) starts[i] = starts[i-1] + 2*nprocs[2*i-2]; 71389d82c54SBarry Smith 71489d82c54SBarry Smith /* send the messages */ 715b0a32e0cSBarry Smith ierr = PetscMalloc((nsends+1)*sizeof(MPI_Request),&send_waits);CHKERRQ(ierr); 71632dcc486SBarry Smith ierr = PetscMalloc((nsends+1)*sizeof(PetscInt),&dest);CHKERRQ(ierr); 71789d82c54SBarry Smith cnt = 0; 71889d82c54SBarry Smith for (i=0; i<size; i++) { 71927c402fcSBarry Smith if (nprocs[2*i]) { 72032dcc486SBarry Smith ierr = MPI_Isend(sends+starts[i],2*nprocs[2*i],MPIU_INT,i,tag1,comm,send_waits+cnt);CHKERRQ(ierr); 72130dcb7c9SBarry Smith dest[cnt] = i; 72289d82c54SBarry Smith cnt++; 72389d82c54SBarry Smith } 72489d82c54SBarry Smith } 72589d82c54SBarry Smith ierr = PetscFree(starts);CHKERRQ(ierr); 72689d82c54SBarry Smith 72789d82c54SBarry Smith /* wait on receives */ 72897f1f81fSBarry Smith ierr = PetscMalloc((nrecvs+1)*sizeof(PetscMPIInt),&source);CHKERRQ(ierr); 72997f1f81fSBarry Smith ierr = PetscMalloc((nrecvs+1)*sizeof(PetscMPIInt),&len);CHKERRQ(ierr); 73089d82c54SBarry Smith cnt = nrecvs; 73132dcc486SBarry Smith ierr = PetscMalloc((ng+1)*sizeof(PetscInt),&nownedsenders);CHKERRQ(ierr); 73232dcc486SBarry Smith ierr = PetscMemzero(nownedsenders,ng*sizeof(PetscInt));CHKERRQ(ierr); 73389d82c54SBarry Smith while (cnt) { 73489d82c54SBarry Smith ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr); 73589d82c54SBarry Smith /* unpack receives into our local space */ 73632dcc486SBarry Smith ierr = MPI_Get_count(&recv_status,MPIU_INT,&len[imdex]);CHKERRQ(ierr); 73789d82c54SBarry Smith source[imdex] = recv_status.MPI_SOURCE; 73830dcb7c9SBarry Smith len[imdex] = len[imdex]/2; 739caba0dd0SBarry Smith /* count how many local owners for each of my global owned indices */ 74030dcb7c9SBarry Smith for (i=0; i<len[imdex]; i++) nownedsenders[recvs[2*imdex*nmax+2*i]-rstart]++; 74189d82c54SBarry Smith cnt--; 74289d82c54SBarry Smith } 74389d82c54SBarry Smith ierr = PetscFree(recv_waits);CHKERRQ(ierr); 74489d82c54SBarry Smith 74530dcb7c9SBarry Smith /* count how many globally owned indices are on an edge multiplied by how many processors own them. */ 746bc8ff85bSBarry Smith nowned = 0; 747bc8ff85bSBarry Smith nownedm = 0; 748bc8ff85bSBarry Smith for (i=0; i<ng; i++) { 749bc8ff85bSBarry Smith if (nownedsenders[i] > 1) {nownedm += nownedsenders[i]; nowned++;} 750bc8ff85bSBarry Smith } 751bc8ff85bSBarry Smith 752bc8ff85bSBarry Smith /* create single array to contain rank of all local owners of each globally owned index */ 75332dcc486SBarry Smith ierr = PetscMalloc((nownedm+1)*sizeof(PetscInt),&ownedsenders);CHKERRQ(ierr); 75432dcc486SBarry Smith ierr = PetscMalloc((ng+1)*sizeof(PetscInt),&starts);CHKERRQ(ierr); 755bc8ff85bSBarry Smith starts[0] = 0; 756bc8ff85bSBarry Smith for (i=1; i<ng; i++) { 757bc8ff85bSBarry Smith if (nownedsenders[i-1] > 1) starts[i] = starts[i-1] + nownedsenders[i-1]; 758bc8ff85bSBarry Smith else starts[i] = starts[i-1]; 759bc8ff85bSBarry Smith } 760bc8ff85bSBarry Smith 76130dcb7c9SBarry Smith /* for each nontrival globally owned node list all arriving processors */ 762bc8ff85bSBarry Smith for (i=0; i<nrecvs; i++) { 763bc8ff85bSBarry Smith for (j=0; j<len[i]; j++) { 76430dcb7c9SBarry Smith node = recvs[2*i*nmax+2*j]-rstart; 765f6e5521dSKarl Rupp if (nownedsenders[node] > 1) ownedsenders[starts[node]++] = source[i]; 766bc8ff85bSBarry Smith } 767bc8ff85bSBarry Smith } 768bc8ff85bSBarry Smith 76907b52d57SBarry Smith if (debug) { /* ----------------------------------- */ 77030dcb7c9SBarry Smith starts[0] = 0; 77130dcb7c9SBarry Smith for (i=1; i<ng; i++) { 77230dcb7c9SBarry Smith if (nownedsenders[i-1] > 1) starts[i] = starts[i-1] + nownedsenders[i-1]; 77330dcb7c9SBarry Smith else starts[i] = starts[i-1]; 77430dcb7c9SBarry Smith } 77530dcb7c9SBarry Smith for (i=0; i<ng; i++) { 77630dcb7c9SBarry Smith if (nownedsenders[i] > 1) { 77730dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"[%d] global node %d local owner processors: ",rank,i+rstart);CHKERRQ(ierr); 77830dcb7c9SBarry Smith for (j=0; j<nownedsenders[i]; j++) { 77930dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"%d ",ownedsenders[starts[i]+j]);CHKERRQ(ierr); 78030dcb7c9SBarry Smith } 78130dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"\n");CHKERRQ(ierr); 78230dcb7c9SBarry Smith } 78330dcb7c9SBarry Smith } 78430dcb7c9SBarry Smith ierr = PetscSynchronizedFlush(comm);CHKERRQ(ierr); 78507b52d57SBarry Smith } /* ----------------------------------- */ 78630dcb7c9SBarry Smith 7873677ff5aSBarry Smith /* wait on original sends */ 7883a96401aSBarry Smith if (nsends) { 789b0a32e0cSBarry Smith ierr = PetscMalloc(nsends*sizeof(MPI_Status),&send_status);CHKERRQ(ierr); 7903a96401aSBarry Smith ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr); 7913a96401aSBarry Smith ierr = PetscFree(send_status);CHKERRQ(ierr); 7923a96401aSBarry Smith } 79389d82c54SBarry Smith ierr = PetscFree(send_waits);CHKERRQ(ierr); 7943a96401aSBarry Smith ierr = PetscFree(sends);CHKERRQ(ierr); 7953677ff5aSBarry Smith ierr = PetscFree(nprocs);CHKERRQ(ierr); 7963677ff5aSBarry Smith 7973677ff5aSBarry Smith /* pack messages to send back to local owners */ 79830dcb7c9SBarry Smith starts[0] = 0; 79930dcb7c9SBarry Smith for (i=1; i<ng; i++) { 80030dcb7c9SBarry Smith if (nownedsenders[i-1] > 1) starts[i] = starts[i-1] + nownedsenders[i-1]; 80130dcb7c9SBarry Smith else starts[i] = starts[i-1]; 80230dcb7c9SBarry Smith } 80330dcb7c9SBarry Smith nsends2 = nrecvs; 80432dcc486SBarry Smith ierr = PetscMalloc((nsends2+1)*sizeof(PetscInt),&nprocs);CHKERRQ(ierr); /* length of each message */ 80530dcb7c9SBarry Smith for (i=0; i<nrecvs; i++) { 80630dcb7c9SBarry Smith nprocs[i] = 1; 80730dcb7c9SBarry Smith for (j=0; j<len[i]; j++) { 80830dcb7c9SBarry Smith node = recvs[2*i*nmax+2*j]-rstart; 809f6e5521dSKarl Rupp if (nownedsenders[node] > 1) nprocs[i] += 2 + nownedsenders[node]; 81030dcb7c9SBarry Smith } 81130dcb7c9SBarry Smith } 812f6e5521dSKarl Rupp nt = 0; 813f6e5521dSKarl Rupp for (i=0; i<nsends2; i++) nt += nprocs[i]; 814f6e5521dSKarl Rupp 81532dcc486SBarry Smith ierr = PetscMalloc((nt+1)*sizeof(PetscInt),&sends2);CHKERRQ(ierr); 81632dcc486SBarry Smith ierr = PetscMalloc((nsends2+1)*sizeof(PetscInt),&starts2);CHKERRQ(ierr); 817f6e5521dSKarl Rupp 818f6e5521dSKarl Rupp starts2[0] = 0; 819f6e5521dSKarl Rupp for (i=1; i<nsends2; i++) starts2[i] = starts2[i-1] + nprocs[i-1]; 82030dcb7c9SBarry Smith /* 82130dcb7c9SBarry Smith Each message is 1 + nprocs[i] long, and consists of 82230dcb7c9SBarry Smith (0) the number of nodes being sent back 82330dcb7c9SBarry Smith (1) the local node number, 82430dcb7c9SBarry Smith (2) the number of processors sharing it, 82530dcb7c9SBarry Smith (3) the processors sharing it 82630dcb7c9SBarry Smith */ 82730dcb7c9SBarry Smith for (i=0; i<nsends2; i++) { 82830dcb7c9SBarry Smith cnt = 1; 82930dcb7c9SBarry Smith sends2[starts2[i]] = 0; 83030dcb7c9SBarry Smith for (j=0; j<len[i]; j++) { 83130dcb7c9SBarry Smith node = recvs[2*i*nmax+2*j]-rstart; 83230dcb7c9SBarry Smith if (nownedsenders[node] > 1) { 83330dcb7c9SBarry Smith sends2[starts2[i]]++; 83430dcb7c9SBarry Smith sends2[starts2[i]+cnt++] = recvs[2*i*nmax+2*j+1]; 83530dcb7c9SBarry Smith sends2[starts2[i]+cnt++] = nownedsenders[node]; 83632dcc486SBarry Smith ierr = PetscMemcpy(&sends2[starts2[i]+cnt],&ownedsenders[starts[node]],nownedsenders[node]*sizeof(PetscInt));CHKERRQ(ierr); 83730dcb7c9SBarry Smith cnt += nownedsenders[node]; 83830dcb7c9SBarry Smith } 83930dcb7c9SBarry Smith } 84030dcb7c9SBarry Smith } 84130dcb7c9SBarry Smith 84230dcb7c9SBarry Smith /* receive the message lengths */ 84330dcb7c9SBarry Smith nrecvs2 = nsends; 84432dcc486SBarry Smith ierr = PetscMalloc((nrecvs2+1)*sizeof(PetscInt),&lens2);CHKERRQ(ierr); 84532dcc486SBarry Smith ierr = PetscMalloc((nrecvs2+1)*sizeof(PetscInt),&starts3);CHKERRQ(ierr); 846d44834fbSBarry Smith ierr = PetscMalloc((nrecvs2+1)*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr); 84730dcb7c9SBarry Smith for (i=0; i<nrecvs2; i++) { 848d44834fbSBarry Smith ierr = MPI_Irecv(&lens2[i],1,MPIU_INT,dest[i],tag2,comm,recv_waits+i);CHKERRQ(ierr); 84930dcb7c9SBarry Smith } 850d44834fbSBarry Smith 8518a8e0b3aSBarry Smith /* send the message lengths */ 8528a8e0b3aSBarry Smith for (i=0; i<nsends2; i++) { 8538a8e0b3aSBarry Smith ierr = MPI_Send(&nprocs[i],1,MPIU_INT,source[i],tag2,comm);CHKERRQ(ierr); 8548a8e0b3aSBarry Smith } 8558a8e0b3aSBarry Smith 856d44834fbSBarry Smith /* wait on receives of lens */ 8570c468ba9SBarry Smith if (nrecvs2) { 8580c468ba9SBarry Smith ierr = PetscMalloc(nrecvs2*sizeof(MPI_Status),&recv_statuses);CHKERRQ(ierr); 859d44834fbSBarry Smith ierr = MPI_Waitall(nrecvs2,recv_waits,recv_statuses);CHKERRQ(ierr); 860d44834fbSBarry Smith ierr = PetscFree(recv_statuses);CHKERRQ(ierr); 8610c468ba9SBarry Smith } 862a2ea699eSBarry Smith ierr = PetscFree(recv_waits);CHKERRQ(ierr); 863d44834fbSBarry Smith 86430dcb7c9SBarry Smith starts3[0] = 0; 865d44834fbSBarry Smith nt = 0; 86630dcb7c9SBarry Smith for (i=0; i<nrecvs2-1; i++) { 86730dcb7c9SBarry Smith starts3[i+1] = starts3[i] + lens2[i]; 868d44834fbSBarry Smith nt += lens2[i]; 86930dcb7c9SBarry Smith } 87076466f69SStefano Zampini if (nrecvs2) nt += lens2[nrecvs2-1]; 871d44834fbSBarry Smith 87232dcc486SBarry Smith ierr = PetscMalloc((nt+1)*sizeof(PetscInt),&recvs2);CHKERRQ(ierr); 873b0a32e0cSBarry Smith ierr = PetscMalloc((nrecvs2+1)*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr); 87452b72c4aSBarry Smith for (i=0; i<nrecvs2; i++) { 87532dcc486SBarry Smith ierr = MPI_Irecv(recvs2+starts3[i],lens2[i],MPIU_INT,dest[i],tag3,comm,recv_waits+i);CHKERRQ(ierr); 87630dcb7c9SBarry Smith } 87730dcb7c9SBarry Smith 87830dcb7c9SBarry Smith /* send the messages */ 879b0a32e0cSBarry Smith ierr = PetscMalloc((nsends2+1)*sizeof(MPI_Request),&send_waits);CHKERRQ(ierr); 88030dcb7c9SBarry Smith for (i=0; i<nsends2; i++) { 88132dcc486SBarry Smith ierr = MPI_Isend(sends2+starts2[i],nprocs[i],MPIU_INT,source[i],tag3,comm,send_waits+i);CHKERRQ(ierr); 88230dcb7c9SBarry Smith } 88330dcb7c9SBarry Smith 88430dcb7c9SBarry Smith /* wait on receives */ 8850c468ba9SBarry Smith if (nrecvs2) { 8860c468ba9SBarry Smith ierr = PetscMalloc(nrecvs2*sizeof(MPI_Status),&recv_statuses);CHKERRQ(ierr); 88730dcb7c9SBarry Smith ierr = MPI_Waitall(nrecvs2,recv_waits,recv_statuses);CHKERRQ(ierr); 88830dcb7c9SBarry Smith ierr = PetscFree(recv_statuses);CHKERRQ(ierr); 8890c468ba9SBarry Smith } 89030dcb7c9SBarry Smith ierr = PetscFree(recv_waits);CHKERRQ(ierr); 89130dcb7c9SBarry Smith ierr = PetscFree(nprocs);CHKERRQ(ierr); 89230dcb7c9SBarry Smith 89307b52d57SBarry Smith if (debug) { /* ----------------------------------- */ 89430dcb7c9SBarry Smith cnt = 0; 89530dcb7c9SBarry Smith for (i=0; i<nrecvs2; i++) { 89630dcb7c9SBarry Smith nt = recvs2[cnt++]; 89730dcb7c9SBarry Smith for (j=0; j<nt; j++) { 89830dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"[%d] local node %d number of subdomains %d: ",rank,recvs2[cnt],recvs2[cnt+1]);CHKERRQ(ierr); 89930dcb7c9SBarry Smith for (k=0; k<recvs2[cnt+1]; k++) { 90030dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"%d ",recvs2[cnt+2+k]);CHKERRQ(ierr); 90130dcb7c9SBarry Smith } 90230dcb7c9SBarry Smith cnt += 2 + recvs2[cnt+1]; 90330dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"\n");CHKERRQ(ierr); 90430dcb7c9SBarry Smith } 90530dcb7c9SBarry Smith } 90630dcb7c9SBarry Smith ierr = PetscSynchronizedFlush(comm);CHKERRQ(ierr); 90707b52d57SBarry Smith } /* ----------------------------------- */ 90830dcb7c9SBarry Smith 90930dcb7c9SBarry Smith /* count number subdomains for each local node */ 91032dcc486SBarry Smith ierr = PetscMalloc(size*sizeof(PetscInt),&nprocs);CHKERRQ(ierr); 91132dcc486SBarry Smith ierr = PetscMemzero(nprocs,size*sizeof(PetscInt));CHKERRQ(ierr); 91230dcb7c9SBarry Smith cnt = 0; 91330dcb7c9SBarry Smith for (i=0; i<nrecvs2; i++) { 91430dcb7c9SBarry Smith nt = recvs2[cnt++]; 91530dcb7c9SBarry Smith for (j=0; j<nt; j++) { 916f6e5521dSKarl Rupp for (k=0; k<recvs2[cnt+1]; k++) nprocs[recvs2[cnt+2+k]]++; 91730dcb7c9SBarry Smith cnt += 2 + recvs2[cnt+1]; 91830dcb7c9SBarry Smith } 91930dcb7c9SBarry Smith } 92030dcb7c9SBarry Smith nt = 0; for (i=0; i<size; i++) nt += (nprocs[i] > 0); 92130dcb7c9SBarry Smith *nproc = nt; 92232dcc486SBarry Smith ierr = PetscMalloc((nt+1)*sizeof(PetscInt),procs);CHKERRQ(ierr); 92332dcc486SBarry Smith ierr = PetscMalloc((nt+1)*sizeof(PetscInt),numprocs);CHKERRQ(ierr); 92432dcc486SBarry Smith ierr = PetscMalloc((nt+1)*sizeof(PetscInt*),indices);CHKERRQ(ierr); 9250298fd71SBarry Smith for (i=0;i<nt+1;i++) (*indices)[i]=NULL; 92632dcc486SBarry Smith ierr = PetscMalloc(size*sizeof(PetscInt),&bprocs);CHKERRQ(ierr); 92730dcb7c9SBarry Smith cnt = 0; 92830dcb7c9SBarry Smith for (i=0; i<size; i++) { 92930dcb7c9SBarry Smith if (nprocs[i] > 0) { 93030dcb7c9SBarry Smith bprocs[i] = cnt; 93130dcb7c9SBarry Smith (*procs)[cnt] = i; 93230dcb7c9SBarry Smith (*numprocs)[cnt] = nprocs[i]; 93332dcc486SBarry Smith ierr = PetscMalloc(nprocs[i]*sizeof(PetscInt),&(*indices)[cnt]);CHKERRQ(ierr); 93430dcb7c9SBarry Smith cnt++; 93530dcb7c9SBarry Smith } 93630dcb7c9SBarry Smith } 93730dcb7c9SBarry Smith 93830dcb7c9SBarry Smith /* make the list of subdomains for each nontrivial local node */ 93932dcc486SBarry Smith ierr = PetscMemzero(*numprocs,nt*sizeof(PetscInt));CHKERRQ(ierr); 94030dcb7c9SBarry Smith cnt = 0; 94130dcb7c9SBarry Smith for (i=0; i<nrecvs2; i++) { 94230dcb7c9SBarry Smith nt = recvs2[cnt++]; 94330dcb7c9SBarry Smith for (j=0; j<nt; j++) { 944f6e5521dSKarl Rupp for (k=0; k<recvs2[cnt+1]; k++) (*indices)[bprocs[recvs2[cnt+2+k]]][(*numprocs)[bprocs[recvs2[cnt+2+k]]]++] = recvs2[cnt]; 94530dcb7c9SBarry Smith cnt += 2 + recvs2[cnt+1]; 94630dcb7c9SBarry Smith } 94730dcb7c9SBarry Smith } 94830dcb7c9SBarry Smith ierr = PetscFree(bprocs);CHKERRQ(ierr); 94907b52d57SBarry Smith ierr = PetscFree(recvs2);CHKERRQ(ierr); 95030dcb7c9SBarry Smith 95107b52d57SBarry Smith /* sort the node indexing by their global numbers */ 95207b52d57SBarry Smith nt = *nproc; 95307b52d57SBarry Smith for (i=0; i<nt; i++) { 95432dcc486SBarry Smith ierr = PetscMalloc(((*numprocs)[i])*sizeof(PetscInt),&tmp);CHKERRQ(ierr); 955f6e5521dSKarl Rupp for (j=0; j<(*numprocs)[i]; j++) tmp[j] = lindices[(*indices)[i][j]]; 95607b52d57SBarry Smith ierr = PetscSortIntWithArray((*numprocs)[i],tmp,(*indices)[i]);CHKERRQ(ierr); 95707b52d57SBarry Smith ierr = PetscFree(tmp);CHKERRQ(ierr); 95807b52d57SBarry Smith } 95907b52d57SBarry Smith 96007b52d57SBarry Smith if (debug) { /* ----------------------------------- */ 96130dcb7c9SBarry Smith nt = *nproc; 96230dcb7c9SBarry Smith for (i=0; i<nt; i++) { 96330dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"[%d] subdomain %d number of indices %d: ",rank,(*procs)[i],(*numprocs)[i]);CHKERRQ(ierr); 96430dcb7c9SBarry Smith for (j=0; j<(*numprocs)[i]; j++) { 96530dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"%d ",(*indices)[i][j]);CHKERRQ(ierr); 96630dcb7c9SBarry Smith } 96730dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"\n");CHKERRQ(ierr); 96830dcb7c9SBarry Smith } 96930dcb7c9SBarry Smith ierr = PetscSynchronizedFlush(comm);CHKERRQ(ierr); 97007b52d57SBarry Smith } /* ----------------------------------- */ 97130dcb7c9SBarry Smith 97230dcb7c9SBarry Smith /* wait on sends */ 97330dcb7c9SBarry Smith if (nsends2) { 974b0a32e0cSBarry Smith ierr = PetscMalloc(nsends2*sizeof(MPI_Status),&send_status);CHKERRQ(ierr); 97530dcb7c9SBarry Smith ierr = MPI_Waitall(nsends2,send_waits,send_status);CHKERRQ(ierr); 97630dcb7c9SBarry Smith ierr = PetscFree(send_status);CHKERRQ(ierr); 97730dcb7c9SBarry Smith } 97830dcb7c9SBarry Smith 97930dcb7c9SBarry Smith ierr = PetscFree(starts3);CHKERRQ(ierr); 98030dcb7c9SBarry Smith ierr = PetscFree(dest);CHKERRQ(ierr); 98130dcb7c9SBarry Smith ierr = PetscFree(send_waits);CHKERRQ(ierr); 9823677ff5aSBarry Smith 983bc8ff85bSBarry Smith ierr = PetscFree(nownedsenders);CHKERRQ(ierr); 984bc8ff85bSBarry Smith ierr = PetscFree(ownedsenders);CHKERRQ(ierr); 985bc8ff85bSBarry Smith ierr = PetscFree(starts);CHKERRQ(ierr); 98630dcb7c9SBarry Smith ierr = PetscFree(starts2);CHKERRQ(ierr); 98730dcb7c9SBarry Smith ierr = PetscFree(lens2);CHKERRQ(ierr); 98889d82c54SBarry Smith 98989d82c54SBarry Smith ierr = PetscFree(source);CHKERRQ(ierr); 99097f1f81fSBarry Smith ierr = PetscFree(len);CHKERRQ(ierr); 99189d82c54SBarry Smith ierr = PetscFree(recvs);CHKERRQ(ierr); 9923a96401aSBarry Smith ierr = PetscFree(nprocs);CHKERRQ(ierr); 99330dcb7c9SBarry Smith ierr = PetscFree(sends2);CHKERRQ(ierr); 99424cf384cSBarry Smith 99524cf384cSBarry Smith /* put the information about myself as the first entry in the list */ 99624cf384cSBarry Smith first_procs = (*procs)[0]; 99724cf384cSBarry Smith first_numprocs = (*numprocs)[0]; 99824cf384cSBarry Smith first_indices = (*indices)[0]; 99924cf384cSBarry Smith for (i=0; i<*nproc; i++) { 100024cf384cSBarry Smith if ((*procs)[i] == rank) { 100124cf384cSBarry Smith (*procs)[0] = (*procs)[i]; 100224cf384cSBarry Smith (*numprocs)[0] = (*numprocs)[i]; 100324cf384cSBarry Smith (*indices)[0] = (*indices)[i]; 100424cf384cSBarry Smith (*procs)[i] = first_procs; 100524cf384cSBarry Smith (*numprocs)[i] = first_numprocs; 100624cf384cSBarry Smith (*indices)[i] = first_indices; 100724cf384cSBarry Smith break; 100824cf384cSBarry Smith } 100924cf384cSBarry Smith } 101089d82c54SBarry Smith PetscFunctionReturn(0); 101189d82c54SBarry Smith } 101289d82c54SBarry Smith 10134a2ae208SSatish Balay #undef __FUNCT__ 10144a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingRestoreInfo" 101507b52d57SBarry Smith /*@C 101607b52d57SBarry Smith ISLocalToGlobalMappingRestoreInfo - Frees the memory allocated by ISLocalToGlobalMappingGetInfo() 101789d82c54SBarry Smith 101807b52d57SBarry Smith Collective on ISLocalToGlobalMapping 101907b52d57SBarry Smith 102007b52d57SBarry Smith Input Parameters: 102107b52d57SBarry Smith . mapping - the mapping from local to global indexing 102207b52d57SBarry Smith 102307b52d57SBarry Smith Output Parameter: 102407b52d57SBarry Smith + nproc - number of processors that are connected to this one 102507b52d57SBarry Smith . proc - neighboring processors 102607b52d57SBarry Smith . numproc - number of indices for each processor 102707b52d57SBarry Smith - indices - indices of local nodes shared with neighbor (sorted by global numbering) 102807b52d57SBarry Smith 102907b52d57SBarry Smith Level: advanced 103007b52d57SBarry Smith 103107b52d57SBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreateIS(), ISLocalToGlobalMappingCreate(), 103207b52d57SBarry Smith ISLocalToGlobalMappingGetInfo() 103307b52d57SBarry Smith @*/ 10347087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingRestoreInfo(ISLocalToGlobalMapping mapping,PetscInt *nproc,PetscInt *procs[],PetscInt *numprocs[],PetscInt **indices[]) 103507b52d57SBarry Smith { 10366849ba73SBarry Smith PetscErrorCode ierr; 103732dcc486SBarry Smith PetscInt i; 103807b52d57SBarry Smith 103907b52d57SBarry Smith PetscFunctionBegin; 104005b42c5fSBarry Smith ierr = PetscFree(*procs);CHKERRQ(ierr); 104105b42c5fSBarry Smith ierr = PetscFree(*numprocs);CHKERRQ(ierr); 104200ff320aSBarry Smith if (*indices) { 104305b42c5fSBarry Smith ierr = PetscFree((*indices)[0]);CHKERRQ(ierr); 104400ff320aSBarry Smith for (i=1; i<*nproc; i++) { 104505b42c5fSBarry Smith ierr = PetscFree((*indices)[i]);CHKERRQ(ierr); 104607b52d57SBarry Smith } 104707b52d57SBarry Smith ierr = PetscFree(*indices);CHKERRQ(ierr); 104824cf384cSBarry Smith } 104907b52d57SBarry Smith PetscFunctionReturn(0); 105007b52d57SBarry Smith } 105186994e45SJed Brown 105286994e45SJed Brown #undef __FUNCT__ 105386994e45SJed Brown #define __FUNCT__ "ISLocalToGlobalMappingGetIndices" 105486994e45SJed Brown /*@C 105586994e45SJed Brown ISLocalToGlobalMappingGetIndices - Get global indices for every local point 105686994e45SJed Brown 105786994e45SJed Brown Not Collective 105886994e45SJed Brown 105986994e45SJed Brown Input Arguments: 106086994e45SJed Brown . ltog - local to global mapping 106186994e45SJed Brown 106286994e45SJed Brown Output Arguments: 106386994e45SJed Brown . array - array of indices 106486994e45SJed Brown 106586994e45SJed Brown Level: advanced 106686994e45SJed Brown 106786994e45SJed Brown .seealso: ISLocalToGlobalMappingCreate(), ISLocalToGlobalMappingApply(), ISLocalToGlobalMappingRestoreIndices() 106886994e45SJed Brown @*/ 10697087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingGetIndices(ISLocalToGlobalMapping ltog,const PetscInt **array) 107086994e45SJed Brown { 107186994e45SJed Brown PetscFunctionBegin; 107286994e45SJed Brown PetscValidHeaderSpecific(ltog,IS_LTOGM_CLASSID,1); 107386994e45SJed Brown PetscValidPointer(array,2); 107486994e45SJed Brown *array = ltog->indices; 107586994e45SJed Brown PetscFunctionReturn(0); 107686994e45SJed Brown } 107786994e45SJed Brown 107886994e45SJed Brown #undef __FUNCT__ 107986994e45SJed Brown #define __FUNCT__ "ISLocalToGlobalMappingRestoreIndices" 108086994e45SJed Brown /*@C 108186994e45SJed Brown ISLocalToGlobalMappingRestoreIndices - Restore indices obtained with ISLocalToGlobalMappingRestoreIndices() 108286994e45SJed Brown 108386994e45SJed Brown Not Collective 108486994e45SJed Brown 108586994e45SJed Brown Input Arguments: 108686994e45SJed Brown + ltog - local to global mapping 108786994e45SJed Brown - array - array of indices 108886994e45SJed Brown 108986994e45SJed Brown Level: advanced 109086994e45SJed Brown 109186994e45SJed Brown .seealso: ISLocalToGlobalMappingCreate(), ISLocalToGlobalMappingApply(), ISLocalToGlobalMappingGetIndices() 109286994e45SJed Brown @*/ 10937087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingRestoreIndices(ISLocalToGlobalMapping ltog,const PetscInt **array) 109486994e45SJed Brown { 109586994e45SJed Brown PetscFunctionBegin; 109686994e45SJed Brown PetscValidHeaderSpecific(ltog,IS_LTOGM_CLASSID,1); 109786994e45SJed Brown PetscValidPointer(array,2); 109886994e45SJed Brown if (*array != ltog->indices) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_BADPTR,"Trying to return mismatched pointer"); 10990298fd71SBarry Smith *array = NULL; 110086994e45SJed Brown PetscFunctionReturn(0); 110186994e45SJed Brown } 1102f7efa3c7SJed Brown 1103f7efa3c7SJed Brown #undef __FUNCT__ 1104f7efa3c7SJed Brown #define __FUNCT__ "ISLocalToGlobalMappingConcatenate" 1105f7efa3c7SJed Brown /*@C 1106f7efa3c7SJed Brown ISLocalToGlobalMappingConcatenate - Create a new mapping that concatenates a list of mappings 1107f7efa3c7SJed Brown 1108f7efa3c7SJed Brown Not Collective 1109f7efa3c7SJed Brown 1110f7efa3c7SJed Brown Input Arguments: 1111f7efa3c7SJed Brown + comm - communicator for the new mapping, must contain the communicator of every mapping to concatenate 1112f7efa3c7SJed Brown . n - number of mappings to concatenate 1113f7efa3c7SJed Brown - ltogs - local to global mappings 1114f7efa3c7SJed Brown 1115f7efa3c7SJed Brown Output Arguments: 1116f7efa3c7SJed Brown . ltogcat - new mapping 1117f7efa3c7SJed Brown 1118f7efa3c7SJed Brown Level: advanced 1119f7efa3c7SJed Brown 1120f7efa3c7SJed Brown .seealso: ISLocalToGlobalMappingCreate() 1121f7efa3c7SJed Brown @*/ 1122f7efa3c7SJed Brown PetscErrorCode ISLocalToGlobalMappingConcatenate(MPI_Comm comm,PetscInt n,const ISLocalToGlobalMapping ltogs[],ISLocalToGlobalMapping *ltogcat) 1123f7efa3c7SJed Brown { 1124f7efa3c7SJed Brown PetscInt i,cnt,m,*idx; 1125f7efa3c7SJed Brown PetscErrorCode ierr; 1126f7efa3c7SJed Brown 1127f7efa3c7SJed Brown PetscFunctionBegin; 1128f7efa3c7SJed Brown if (n < 0) SETERRQ1(comm,PETSC_ERR_ARG_OUTOFRANGE,"Must have a non-negative number of mappings, given %D",n); 1129f7efa3c7SJed Brown if (n > 0) PetscValidPointer(ltogs,3); 1130f7efa3c7SJed Brown for (i=0; i<n; i++) PetscValidHeaderSpecific(ltogs[i],IS_LTOGM_CLASSID,3); 1131f7efa3c7SJed Brown PetscValidPointer(ltogcat,4); 1132f7efa3c7SJed Brown for (cnt=0,i=0; i<n; i++) { 1133f7efa3c7SJed Brown ierr = ISLocalToGlobalMappingGetSize(ltogs[i],&m);CHKERRQ(ierr); 1134f7efa3c7SJed Brown cnt += m; 1135f7efa3c7SJed Brown } 1136f7efa3c7SJed Brown ierr = PetscMalloc(cnt*sizeof(PetscInt),&idx);CHKERRQ(ierr); 1137f7efa3c7SJed Brown for (cnt=0,i=0; i<n; i++) { 1138f7efa3c7SJed Brown const PetscInt *subidx; 1139f7efa3c7SJed Brown ierr = ISLocalToGlobalMappingGetSize(ltogs[i],&m);CHKERRQ(ierr); 1140f7efa3c7SJed Brown ierr = ISLocalToGlobalMappingGetIndices(ltogs[i],&subidx);CHKERRQ(ierr); 1141f7efa3c7SJed Brown ierr = PetscMemcpy(&idx[cnt],subidx,m*sizeof(PetscInt));CHKERRQ(ierr); 1142f7efa3c7SJed Brown ierr = ISLocalToGlobalMappingRestoreIndices(ltogs[i],&subidx);CHKERRQ(ierr); 1143f7efa3c7SJed Brown cnt += m; 1144f7efa3c7SJed Brown } 1145f7efa3c7SJed Brown ierr = ISLocalToGlobalMappingCreate(comm,cnt,idx,PETSC_OWN_POINTER,ltogcat);CHKERRQ(ierr); 1146f7efa3c7SJed Brown PetscFunctionReturn(0); 1147f7efa3c7SJed Brown } 1148