12362add9SBarry Smith 2b45d2f2cSJed Brown #include <petsc-private/isimpl.h> /*I "petscis.h" I*/ 30c312b8eSJed Brown #include <petscsf.h> 4665c2dedSJed Brown #include <petscviewer.h> 52362add9SBarry Smith 67087cfbeSBarry Smith PetscClassId IS_LTOGM_CLASSID; 78e58c17dSMatthew Knepley 804a59952SBarry Smith 94a2ae208SSatish Balay #undef __FUNCT__ 10743c9b42SStefano Zampini #define __FUNCT__ "ISG2LMapApply" 11186d4ecdSBarry Smith PetscErrorCode ISG2LMapApply(ISLocalToGlobalMapping mapping,PetscInt n,const PetscInt in[],PetscInt out[]) 12186d4ecdSBarry Smith { 13186d4ecdSBarry Smith PetscErrorCode ierr; 14743c9b42SStefano Zampini PetscInt i,start,end; 15186d4ecdSBarry Smith 16186d4ecdSBarry Smith PetscFunctionBegin; 17186d4ecdSBarry Smith if (!mapping->globals) { 18186d4ecdSBarry Smith ierr = ISGlobalToLocalMappingApply(mapping,IS_GTOLM_MASK,0,0,0,0);CHKERRQ(ierr); 19186d4ecdSBarry Smith } 20743c9b42SStefano Zampini start = mapping->globalstart; 21743c9b42SStefano Zampini end = mapping->globalend; 22186d4ecdSBarry Smith for (i=0; i<n; i++) { 23186d4ecdSBarry Smith if (in[i] < 0) out[i] = in[i]; 24186d4ecdSBarry Smith else if (in[i] < start) out[i] = -1; 25186d4ecdSBarry Smith else if (in[i] > end) out[i] = -1; 26743c9b42SStefano Zampini else out[i] = mapping->globals[in[i] - start]; 27186d4ecdSBarry Smith } 28186d4ecdSBarry Smith PetscFunctionReturn(0); 29186d4ecdSBarry Smith } 30186d4ecdSBarry Smith 31186d4ecdSBarry Smith 32186d4ecdSBarry Smith #undef __FUNCT__ 334a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingGetSize" 343b9aefa3SBarry Smith /*@C 353b9aefa3SBarry Smith ISLocalToGlobalMappingGetSize - Gets the local size of a local to global mapping. 363b9aefa3SBarry Smith 373b9aefa3SBarry Smith Not Collective 383b9aefa3SBarry Smith 393b9aefa3SBarry Smith Input Parameter: 403b9aefa3SBarry Smith . ltog - local to global mapping 413b9aefa3SBarry Smith 423b9aefa3SBarry Smith Output Parameter: 433b9aefa3SBarry Smith . n - the number of entries in the local mapping 443b9aefa3SBarry Smith 453b9aefa3SBarry Smith Level: advanced 463b9aefa3SBarry Smith 47273d9f13SBarry Smith Concepts: mapping^local to global 483b9aefa3SBarry Smith 493b9aefa3SBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreate() 503b9aefa3SBarry Smith @*/ 517087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingGetSize(ISLocalToGlobalMapping mapping,PetscInt *n) 523b9aefa3SBarry Smith { 533b9aefa3SBarry Smith PetscFunctionBegin; 540700a824SBarry Smith PetscValidHeaderSpecific(mapping,IS_LTOGM_CLASSID,1); 554482741eSBarry Smith PetscValidIntPointer(n,2); 563b9aefa3SBarry Smith *n = mapping->n; 573b9aefa3SBarry Smith PetscFunctionReturn(0); 583b9aefa3SBarry Smith } 593b9aefa3SBarry Smith 604a2ae208SSatish Balay #undef __FUNCT__ 614a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingView" 625a5d4f66SBarry Smith /*@C 635a5d4f66SBarry Smith ISLocalToGlobalMappingView - View a local to global mapping 645a5d4f66SBarry Smith 65b9cd556bSLois Curfman McInnes Not Collective 66b9cd556bSLois Curfman McInnes 675a5d4f66SBarry Smith Input Parameters: 683b9aefa3SBarry Smith + ltog - local to global mapping 693b9aefa3SBarry Smith - viewer - viewer 705a5d4f66SBarry Smith 71a997ad1aSLois Curfman McInnes Level: advanced 72a997ad1aSLois Curfman McInnes 73273d9f13SBarry Smith Concepts: mapping^local to global 745a5d4f66SBarry Smith 755a5d4f66SBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreate() 765a5d4f66SBarry Smith @*/ 777087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingView(ISLocalToGlobalMapping mapping,PetscViewer viewer) 785a5d4f66SBarry Smith { 7932dcc486SBarry Smith PetscInt i; 8032dcc486SBarry Smith PetscMPIInt rank; 81ace3abfcSBarry Smith PetscBool iascii; 826849ba73SBarry Smith PetscErrorCode ierr; 835a5d4f66SBarry Smith 845a5d4f66SBarry Smith PetscFunctionBegin; 850700a824SBarry Smith PetscValidHeaderSpecific(mapping,IS_LTOGM_CLASSID,1); 863050cee2SBarry Smith if (!viewer) { 87ce94432eSBarry Smith ierr = PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject)mapping),&viewer);CHKERRQ(ierr); 883050cee2SBarry Smith } 890700a824SBarry Smith PetscValidHeaderSpecific(viewer,PETSC_VIEWER_CLASSID,2); 905a5d4f66SBarry Smith 91ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mapping),&rank);CHKERRQ(ierr); 92251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 9332077d6dSBarry Smith if (iascii) { 9498c3331eSBarry Smith ierr = PetscObjectPrintClassNamePrefixType((PetscObject)mapping,viewer);CHKERRQ(ierr); 957b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_TRUE);CHKERRQ(ierr); 965a5d4f66SBarry Smith for (i=0; i<mapping->n; i++) { 977904a332SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] %D %D\n",rank,i,mapping->indices[i]);CHKERRQ(ierr); 986831982aSBarry Smith } 99b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 1007b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_FALSE);CHKERRQ(ierr); 1017b23a99aSBarry Smith } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Viewer type %s not supported for ISLocalToGlobalMapping",((PetscObject)viewer)->type_name); 1025a5d4f66SBarry Smith PetscFunctionReturn(0); 1035a5d4f66SBarry Smith } 1045a5d4f66SBarry Smith 1054a2ae208SSatish Balay #undef __FUNCT__ 1064a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingCreateIS" 1071f428162SBarry Smith /*@ 1082bdab257SBarry Smith ISLocalToGlobalMappingCreateIS - Creates a mapping between a local (0 to n) 1092bdab257SBarry Smith ordering and a global parallel ordering. 1102bdab257SBarry Smith 1110f5bd95cSBarry Smith Not collective 112b9cd556bSLois Curfman McInnes 113a997ad1aSLois Curfman McInnes Input Parameter: 1148c03b21aSDmitry Karpeev . is - index set containing the global numbers for each local number 1152bdab257SBarry Smith 116a997ad1aSLois Curfman McInnes Output Parameter: 1172bdab257SBarry Smith . mapping - new mapping data structure 1182bdab257SBarry Smith 119f0413b6fSBarry Smith Notes: the block size of the IS determines the block size of the mapping 120a997ad1aSLois Curfman McInnes Level: advanced 121a997ad1aSLois Curfman McInnes 122273d9f13SBarry Smith Concepts: mapping^local to global 1232bdab257SBarry Smith 1242bdab257SBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreate() 1252bdab257SBarry Smith @*/ 1267087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingCreateIS(IS is,ISLocalToGlobalMapping *mapping) 1272bdab257SBarry Smith { 1286849ba73SBarry Smith PetscErrorCode ierr; 1293bbf0e92SBarry Smith PetscInt n,bs; 1305d0c19d7SBarry Smith const PetscInt *indices; 1312bdab257SBarry Smith MPI_Comm comm; 1323bbf0e92SBarry Smith PetscBool isblock; 1333a40ed3dSBarry Smith 1343a40ed3dSBarry Smith PetscFunctionBegin; 1350700a824SBarry Smith PetscValidHeaderSpecific(is,IS_CLASSID,1); 1364482741eSBarry Smith PetscValidPointer(mapping,2); 1372bdab257SBarry Smith 1382bdab257SBarry Smith ierr = PetscObjectGetComm((PetscObject)is,&comm);CHKERRQ(ierr); 1393b9aefa3SBarry Smith ierr = ISGetLocalSize(is,&n);CHKERRQ(ierr); 1403bbf0e92SBarry Smith ierr = PetscObjectTypeCompare((PetscObject)is,ISBLOCK,&isblock);CHKERRQ(ierr); 1413bbf0e92SBarry Smith ierr = ISGetBlockSize(is,&bs);CHKERRQ(ierr); 142f0413b6fSBarry Smith /* if (!isblock) { */ 143f0413b6fSBarry Smith ierr = ISGetIndices(is,&indices);CHKERRQ(ierr); 144f0413b6fSBarry Smith ierr = ISLocalToGlobalMappingCreate(comm,1,n,indices,PETSC_COPY_VALUES,mapping);CHKERRQ(ierr); 1452bdab257SBarry Smith ierr = ISRestoreIndices(is,&indices);CHKERRQ(ierr); 146f0413b6fSBarry Smith /* } else { 147f0413b6fSBarry Smith ierr = ISBlockGetIndices(is,&indices);CHKERRQ(ierr); 148f0413b6fSBarry Smith ierr = ISLocalToGlobalMappingCreate(comm,bs,n,indices,PETSC_COPY_VALUES,mapping);CHKERRQ(ierr); 149f0413b6fSBarry Smith ierr = ISBlockRestoreIndices(is,&indices);CHKERRQ(ierr); 150f0413b6fSBarry Smith }*/ 1513a40ed3dSBarry Smith PetscFunctionReturn(0); 1522bdab257SBarry Smith } 1535a5d4f66SBarry Smith 154a4d96a55SJed Brown #undef __FUNCT__ 155a4d96a55SJed Brown #define __FUNCT__ "ISLocalToGlobalMappingCreateSF" 156a4d96a55SJed Brown /*@C 157a4d96a55SJed Brown ISLocalToGlobalMappingCreateSF - Creates a mapping between a local (0 to n) 158a4d96a55SJed Brown ordering and a global parallel ordering. 159a4d96a55SJed Brown 160a4d96a55SJed Brown Collective 161a4d96a55SJed Brown 162a4d96a55SJed Brown Input Parameter: 163a4d96a55SJed Brown + sf - star forest mapping contiguous local indices to (rank, offset) 164a4d96a55SJed Brown - start - first global index on this process 165a4d96a55SJed Brown 166a4d96a55SJed Brown Output Parameter: 167a4d96a55SJed Brown . mapping - new mapping data structure 168a4d96a55SJed Brown 169a4d96a55SJed Brown Level: advanced 170a4d96a55SJed Brown 171a4d96a55SJed Brown Concepts: mapping^local to global 172a4d96a55SJed Brown 173a4d96a55SJed Brown .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreate(), ISLocalToGlobalMappingCreateIS() 174a4d96a55SJed Brown @*/ 175a4d96a55SJed Brown PetscErrorCode ISLocalToGlobalMappingCreateSF(PetscSF sf,PetscInt start,ISLocalToGlobalMapping *mapping) 176a4d96a55SJed Brown { 177a4d96a55SJed Brown PetscErrorCode ierr; 178a4d96a55SJed Brown PetscInt i,maxlocal,nroots,nleaves,*globals,*ltog; 179a4d96a55SJed Brown const PetscInt *ilocal; 180a4d96a55SJed Brown MPI_Comm comm; 181a4d96a55SJed Brown 182a4d96a55SJed Brown PetscFunctionBegin; 183a4d96a55SJed Brown PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 184a4d96a55SJed Brown PetscValidPointer(mapping,3); 185a4d96a55SJed Brown 186a4d96a55SJed Brown ierr = PetscObjectGetComm((PetscObject)sf,&comm);CHKERRQ(ierr); 1870298fd71SBarry Smith ierr = PetscSFGetGraph(sf,&nroots,&nleaves,&ilocal,NULL);CHKERRQ(ierr); 188f6e5521dSKarl Rupp if (ilocal) { 189f6e5521dSKarl Rupp for (i=0,maxlocal=0; i<nleaves; i++) maxlocal = PetscMax(maxlocal,ilocal[i]+1); 190f6e5521dSKarl Rupp } 191a4d96a55SJed Brown else maxlocal = nleaves; 192785e854fSJed Brown ierr = PetscMalloc1(nroots,&globals);CHKERRQ(ierr); 193785e854fSJed Brown ierr = PetscMalloc1(maxlocal,<og);CHKERRQ(ierr); 194a4d96a55SJed Brown for (i=0; i<nroots; i++) globals[i] = start + i; 195a4d96a55SJed Brown for (i=0; i<maxlocal; i++) ltog[i] = -1; 196a4d96a55SJed Brown ierr = PetscSFBcastBegin(sf,MPIU_INT,globals,ltog);CHKERRQ(ierr); 197a4d96a55SJed Brown ierr = PetscSFBcastEnd(sf,MPIU_INT,globals,ltog);CHKERRQ(ierr); 198f0413b6fSBarry Smith ierr = ISLocalToGlobalMappingCreate(comm,1,maxlocal,ltog,PETSC_OWN_POINTER,mapping);CHKERRQ(ierr); 199a4d96a55SJed Brown ierr = PetscFree(globals);CHKERRQ(ierr); 200a4d96a55SJed Brown PetscFunctionReturn(0); 201a4d96a55SJed Brown } 202b46b645bSBarry Smith 2034a2ae208SSatish Balay #undef __FUNCT__ 204*45b6f7e9SBarry Smith #define __FUNCT__ "ISLocalToGlobalMappingGetBlockSize" 205*45b6f7e9SBarry Smith /*@ 206*45b6f7e9SBarry Smith ISLocalToGlobalMappingGetBlockSize - Gets the blocksize of the mapping 207*45b6f7e9SBarry Smith ordering and a global parallel ordering. 208*45b6f7e9SBarry Smith 209*45b6f7e9SBarry Smith Not Collective 210*45b6f7e9SBarry Smith 211*45b6f7e9SBarry Smith Input Parameters: 212*45b6f7e9SBarry Smith . mapping - mapping data structure 213*45b6f7e9SBarry Smith 214*45b6f7e9SBarry Smith Output Parameter: 215*45b6f7e9SBarry Smith . bs - the blocksize 216*45b6f7e9SBarry Smith 217*45b6f7e9SBarry Smith Level: advanced 218*45b6f7e9SBarry Smith 219*45b6f7e9SBarry Smith Concepts: mapping^local to global 220*45b6f7e9SBarry Smith 221*45b6f7e9SBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreateIS() 222*45b6f7e9SBarry Smith @*/ 223*45b6f7e9SBarry Smith PetscErrorCode ISLocalToGlobalMappingGetBlockSize(ISLocalToGlobalMapping mapping,PetscInt *bs) 224*45b6f7e9SBarry Smith { 225*45b6f7e9SBarry Smith PetscFunctionBegin; 226*45b6f7e9SBarry Smith *bs = mapping->bs; 227*45b6f7e9SBarry Smith PetscFunctionReturn(0); 228*45b6f7e9SBarry Smith } 229*45b6f7e9SBarry Smith 230*45b6f7e9SBarry Smith #undef __FUNCT__ 2314a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingCreate" 232ba5bb76aSSatish Balay /*@ 23390f02eecSBarry Smith ISLocalToGlobalMappingCreate - Creates a mapping between a local (0 to n) 23490f02eecSBarry Smith ordering and a global parallel ordering. 2352362add9SBarry Smith 23689d82c54SBarry Smith Not Collective, but communicator may have more than one process 237b9cd556bSLois Curfman McInnes 2382362add9SBarry Smith Input Parameters: 23989d82c54SBarry Smith + comm - MPI communicator 240f0413b6fSBarry Smith . bs - the block size 24190f02eecSBarry Smith . n - the number of local elements 242f0413b6fSBarry Smith . indices - the global index for each local element, these do not need to be in increasing order (sorted), these values should not be scaled by the blocksize bs 243d5ad8652SBarry Smith - mode - see PetscCopyMode 2442362add9SBarry Smith 245a997ad1aSLois Curfman McInnes Output Parameter: 24690f02eecSBarry Smith . mapping - new mapping data structure 2472362add9SBarry Smith 248f0413b6fSBarry Smith Notes: There is one integer value in indices per block and it represents the actual indices bs*idx + j, where j=0,..,bs-1 249a997ad1aSLois Curfman McInnes Level: advanced 250a997ad1aSLois Curfman McInnes 251273d9f13SBarry Smith Concepts: mapping^local to global 2522362add9SBarry Smith 253d5ad8652SBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreateIS() 2542362add9SBarry Smith @*/ 255f0413b6fSBarry Smith PetscErrorCode ISLocalToGlobalMappingCreate(MPI_Comm cm,PetscInt bs,PetscInt n,const PetscInt indices[],PetscCopyMode mode,ISLocalToGlobalMapping *mapping) 2562362add9SBarry Smith { 2576849ba73SBarry Smith PetscErrorCode ierr; 25832dcc486SBarry Smith PetscInt *in; 259b46b645bSBarry Smith 260b46b645bSBarry Smith PetscFunctionBegin; 26173911063SBarry Smith if (n) PetscValidIntPointer(indices,3); 2624482741eSBarry Smith PetscValidPointer(mapping,4); 263b46b645bSBarry Smith 2640298fd71SBarry Smith *mapping = NULL; 265607a6623SBarry Smith ierr = ISInitializePackage();CHKERRQ(ierr); 2662362add9SBarry Smith 26767c2884eSBarry Smith ierr = PetscHeaderCreate(*mapping,_p_ISLocalToGlobalMapping,int,IS_LTOGM_CLASSID,"ISLocalToGlobalMapping","Local to global mapping","IS", 26852e6d16bSBarry Smith cm,ISLocalToGlobalMappingDestroy,ISLocalToGlobalMappingView);CHKERRQ(ierr); 269d4bb536fSBarry Smith (*mapping)->n = n; 270f0413b6fSBarry Smith (*mapping)->bs = bs; 271d4bb536fSBarry Smith /* 272d4bb536fSBarry Smith Do not create the global to local mapping. This is only created if 273d4bb536fSBarry Smith ISGlobalToLocalMapping() is called 274d4bb536fSBarry Smith */ 275d4bb536fSBarry Smith (*mapping)->globals = 0; 276d5ad8652SBarry Smith if (mode == PETSC_COPY_VALUES) { 277785e854fSJed Brown ierr = PetscMalloc1(n,&in);CHKERRQ(ierr); 278d5ad8652SBarry Smith ierr = PetscMemcpy(in,indices,n*sizeof(PetscInt));CHKERRQ(ierr); 2793bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)*mapping,n*sizeof(PetscInt));CHKERRQ(ierr); 280d5ad8652SBarry Smith (*mapping)->indices = in; 281f6e5521dSKarl Rupp } else if (mode == PETSC_OWN_POINTER) (*mapping)->indices = (PetscInt*)indices; 282f6e5521dSKarl Rupp else SETERRQ(cm,PETSC_ERR_SUP,"Cannot currently use PETSC_USE_POINTER"); 2833a40ed3dSBarry Smith PetscFunctionReturn(0); 2842362add9SBarry Smith } 2852362add9SBarry Smith 2864a2ae208SSatish Balay #undef __FUNCT__ 2874a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingDestroy" 28890f02eecSBarry Smith /*@ 28990f02eecSBarry Smith ISLocalToGlobalMappingDestroy - Destroys a mapping between a local (0 to n) 29090f02eecSBarry Smith ordering and a global parallel ordering. 29190f02eecSBarry Smith 2920f5bd95cSBarry Smith Note Collective 293b9cd556bSLois Curfman McInnes 29490f02eecSBarry Smith Input Parameters: 29590f02eecSBarry Smith . mapping - mapping data structure 29690f02eecSBarry Smith 297a997ad1aSLois Curfman McInnes Level: advanced 298a997ad1aSLois Curfman McInnes 2993acfe500SLois Curfman McInnes .seealso: ISLocalToGlobalMappingCreate() 30090f02eecSBarry Smith @*/ 3016bf464f9SBarry Smith PetscErrorCode ISLocalToGlobalMappingDestroy(ISLocalToGlobalMapping *mapping) 30290f02eecSBarry Smith { 303dfbe8321SBarry Smith PetscErrorCode ierr; 3045fd66863SKarl Rupp 3053a40ed3dSBarry Smith PetscFunctionBegin; 3066bf464f9SBarry Smith if (!*mapping) PetscFunctionReturn(0); 3076bf464f9SBarry Smith PetscValidHeaderSpecific((*mapping),IS_LTOGM_CLASSID,1); 308997056adSBarry Smith if (--((PetscObject)(*mapping))->refct > 0) {*mapping = 0;PetscFunctionReturn(0);} 3096bf464f9SBarry Smith ierr = PetscFree((*mapping)->indices);CHKERRQ(ierr); 3106bf464f9SBarry Smith ierr = PetscFree((*mapping)->globals);CHKERRQ(ierr); 311d38fa0fbSBarry Smith ierr = PetscHeaderDestroy(mapping);CHKERRQ(ierr); 312992144d0SBarry Smith *mapping = 0; 3133a40ed3dSBarry Smith PetscFunctionReturn(0); 31490f02eecSBarry Smith } 31590f02eecSBarry Smith 3164a2ae208SSatish Balay #undef __FUNCT__ 3174a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingApplyIS" 31890f02eecSBarry Smith /*@ 3193acfe500SLois Curfman McInnes ISLocalToGlobalMappingApplyIS - Creates from an IS in the local numbering 3203acfe500SLois Curfman McInnes a new index set using the global numbering defined in an ISLocalToGlobalMapping 3213acfe500SLois Curfman McInnes context. 32290f02eecSBarry Smith 323b9cd556bSLois Curfman McInnes Not collective 324b9cd556bSLois Curfman McInnes 32590f02eecSBarry Smith Input Parameters: 326b9cd556bSLois Curfman McInnes + mapping - mapping between local and global numbering 327b9cd556bSLois Curfman McInnes - is - index set in local numbering 32890f02eecSBarry Smith 32990f02eecSBarry Smith Output Parameters: 33090f02eecSBarry Smith . newis - index set in global numbering 33190f02eecSBarry Smith 332a997ad1aSLois Curfman McInnes Level: advanced 333a997ad1aSLois Curfman McInnes 334273d9f13SBarry Smith Concepts: mapping^local to global 3353acfe500SLois Curfman McInnes 33690f02eecSBarry Smith .seealso: ISLocalToGlobalMappingApply(), ISLocalToGlobalMappingCreate(), 337d4bb536fSBarry Smith ISLocalToGlobalMappingDestroy(), ISGlobalToLocalMappingApply() 33890f02eecSBarry Smith @*/ 3397087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingApplyIS(ISLocalToGlobalMapping mapping,IS is,IS *newis) 34090f02eecSBarry Smith { 3416849ba73SBarry Smith PetscErrorCode ierr; 3425d0c19d7SBarry Smith PetscInt n,i,*idxmap,*idxout,Nmax = mapping->n; 3435d0c19d7SBarry Smith const PetscInt *idxin; 3443a40ed3dSBarry Smith 3453a40ed3dSBarry Smith PetscFunctionBegin; 3460700a824SBarry Smith PetscValidHeaderSpecific(mapping,IS_LTOGM_CLASSID,1); 3470700a824SBarry Smith PetscValidHeaderSpecific(is,IS_CLASSID,2); 3484482741eSBarry Smith PetscValidPointer(newis,3); 34990f02eecSBarry Smith 3503b9aefa3SBarry Smith ierr = ISGetLocalSize(is,&n);CHKERRQ(ierr); 35190f02eecSBarry Smith ierr = ISGetIndices(is,&idxin);CHKERRQ(ierr); 35290f02eecSBarry Smith idxmap = mapping->indices; 35390f02eecSBarry Smith 354785e854fSJed Brown ierr = PetscMalloc1(n,&idxout);CHKERRQ(ierr); 35590f02eecSBarry Smith for (i=0; i<n; i++) { 3567904a332SBarry Smith if (idxin[i] >= Nmax) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local index %D too large %D (max) at %D",idxin[i],Nmax-1,i); 35790f02eecSBarry Smith idxout[i] = idxmap[idxin[i]]; 35890f02eecSBarry Smith } 3593b9aefa3SBarry Smith ierr = ISRestoreIndices(is,&idxin);CHKERRQ(ierr); 360543f3098SMatthew G. Knepley ierr = ISCreateGeneral(PetscObjectComm((PetscObject)is),n,idxout,PETSC_OWN_POINTER,newis);CHKERRQ(ierr); 3613a40ed3dSBarry Smith PetscFunctionReturn(0); 36290f02eecSBarry Smith } 36390f02eecSBarry Smith 364afcb2eb5SJed Brown #undef __FUNCT__ 365afcb2eb5SJed Brown #define __FUNCT__ "ISLocalToGlobalMappingApply" 366b89cb25eSSatish Balay /*@ 3673acfe500SLois Curfman McInnes ISLocalToGlobalMappingApply - Takes a list of integers in a local numbering 3683acfe500SLois Curfman McInnes and converts them to the global numbering. 36990f02eecSBarry Smith 370b9cd556bSLois Curfman McInnes Not collective 371b9cd556bSLois Curfman McInnes 372bb25748dSBarry Smith Input Parameters: 373b9cd556bSLois Curfman McInnes + mapping - the local to global mapping context 374bb25748dSBarry Smith . N - number of integers 375b9cd556bSLois Curfman McInnes - in - input indices in local numbering 376bb25748dSBarry Smith 377bb25748dSBarry Smith Output Parameter: 378bb25748dSBarry Smith . out - indices in global numbering 379bb25748dSBarry Smith 380b9cd556bSLois Curfman McInnes Notes: 381b9cd556bSLois Curfman McInnes The in and out array parameters may be identical. 382d4bb536fSBarry Smith 383a997ad1aSLois Curfman McInnes Level: advanced 384a997ad1aSLois Curfman McInnes 385*45b6f7e9SBarry Smith .seealso: ISLocalToGlobalMappingApplyBlock(), ISLocalToGlobalMappingCreate(),ISLocalToGlobalMappingDestroy(), 3860752156aSBarry Smith ISLocalToGlobalMappingApplyIS(),AOCreateBasic(),AOApplicationToPetsc(), 387d4bb536fSBarry Smith AOPetscToApplication(), ISGlobalToLocalMappingApply() 388bb25748dSBarry Smith 389273d9f13SBarry Smith Concepts: mapping^local to global 390afcb2eb5SJed Brown @*/ 391afcb2eb5SJed Brown PetscErrorCode ISLocalToGlobalMappingApply(ISLocalToGlobalMapping mapping,PetscInt N,const PetscInt in[],PetscInt out[]) 392afcb2eb5SJed Brown { 393*45b6f7e9SBarry Smith PetscInt i,Nmax = mapping->n,bs = mapping->bs; 394*45b6f7e9SBarry Smith const PetscInt *idx = mapping->indices; 395*45b6f7e9SBarry Smith 396*45b6f7e9SBarry Smith PetscFunctionBegin; 397*45b6f7e9SBarry Smith if (bs == 1) { 398*45b6f7e9SBarry Smith for (i=0; i<N; i++) { 399*45b6f7e9SBarry Smith if (in[i] < 0) { 400*45b6f7e9SBarry Smith out[i] = in[i]; 401*45b6f7e9SBarry Smith continue; 402*45b6f7e9SBarry Smith } 403*45b6f7e9SBarry Smith if (in[i] >= Nmax) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local index %D too large %D (max) at %D",in[i],Nmax,i); 404*45b6f7e9SBarry Smith out[i] = idx[in[i]]; 405*45b6f7e9SBarry Smith } 406*45b6f7e9SBarry Smith } else { 407*45b6f7e9SBarry Smith for (i=0; i<N; i++) { 408*45b6f7e9SBarry Smith if (in[i] < 0) { 409*45b6f7e9SBarry Smith out[i] = in[i]; 410*45b6f7e9SBarry Smith continue; 411*45b6f7e9SBarry Smith } 412*45b6f7e9SBarry Smith if (in[i] >= bs*Nmax) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local index %D too large %D (max) at %D",in[i],Nmax,i); 413*45b6f7e9SBarry Smith out[i] = idx[in[i]/bs]*bs + (in[i] % bs); 414*45b6f7e9SBarry Smith } 415*45b6f7e9SBarry Smith } 416*45b6f7e9SBarry Smith PetscFunctionReturn(0); 417*45b6f7e9SBarry Smith } 418*45b6f7e9SBarry Smith 419*45b6f7e9SBarry Smith #undef __FUNCT__ 420*45b6f7e9SBarry Smith #define __FUNCT__ "ISLocalToGlobalMappingApplyBlock" 421*45b6f7e9SBarry Smith /*@ 422*45b6f7e9SBarry Smith ISLocalToGlobalMappingApplyBlock - Takes a list of integers in a local numbering and converts them to the global numbering. 423*45b6f7e9SBarry Smith 424*45b6f7e9SBarry Smith Not collective 425*45b6f7e9SBarry Smith 426*45b6f7e9SBarry Smith Input Parameters: 427*45b6f7e9SBarry Smith + mapping - the local to global mapping context 428*45b6f7e9SBarry Smith . N - number of integers 429*45b6f7e9SBarry Smith - in - input indices in local numbering 430*45b6f7e9SBarry Smith 431*45b6f7e9SBarry Smith Output Parameter: 432*45b6f7e9SBarry Smith . out - indices in global numbering 433*45b6f7e9SBarry Smith 434*45b6f7e9SBarry Smith Notes: 435*45b6f7e9SBarry Smith The in and out array parameters may be identical. 436*45b6f7e9SBarry Smith 437*45b6f7e9SBarry Smith Level: advanced 438*45b6f7e9SBarry Smith 439*45b6f7e9SBarry Smith .seealso: ISLocalToGlobalMappingApply(), ISLocalToGlobalMappingCreate(),ISLocalToGlobalMappingDestroy(), 440*45b6f7e9SBarry Smith ISLocalToGlobalMappingApplyIS(),AOCreateBasic(),AOApplicationToPetsc(), 441*45b6f7e9SBarry Smith AOPetscToApplication(), ISGlobalToLocalMappingApply() 442*45b6f7e9SBarry Smith 443*45b6f7e9SBarry Smith Concepts: mapping^local to global 444*45b6f7e9SBarry Smith @*/ 445*45b6f7e9SBarry Smith PetscErrorCode ISLocalToGlobalMappingApplyBlock(ISLocalToGlobalMapping mapping,PetscInt N,const PetscInt in[],PetscInt out[]) 446*45b6f7e9SBarry Smith { 447afcb2eb5SJed Brown PetscInt i,Nmax = mapping->n; 448afcb2eb5SJed Brown const PetscInt *idx = mapping->indices; 449d4bb536fSBarry Smith 450afcb2eb5SJed Brown PetscFunctionBegin; 451afcb2eb5SJed Brown for (i=0; i<N; i++) { 452afcb2eb5SJed Brown if (in[i] < 0) { 453afcb2eb5SJed Brown out[i] = in[i]; 454afcb2eb5SJed Brown continue; 455afcb2eb5SJed Brown } 456*45b6f7e9SBarry Smith if (in[i] >= Nmax) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local block index %D too large %D (max) at %D",in[i]*mapping->bs,Nmax,i); 457afcb2eb5SJed Brown out[i] = idx[in[i]]; 458afcb2eb5SJed Brown } 459afcb2eb5SJed Brown PetscFunctionReturn(0); 460afcb2eb5SJed Brown } 461d4bb536fSBarry Smith 462d4bb536fSBarry Smith /* -----------------------------------------------------------------------------------------*/ 463d4bb536fSBarry Smith 4644a2ae208SSatish Balay #undef __FUNCT__ 4654a2ae208SSatish Balay #define __FUNCT__ "ISGlobalToLocalMappingSetUp_Private" 466d4bb536fSBarry Smith /* 467d4bb536fSBarry Smith Creates the global fields in the ISLocalToGlobalMapping structure 468d4bb536fSBarry Smith */ 4696849ba73SBarry Smith static PetscErrorCode ISGlobalToLocalMappingSetUp_Private(ISLocalToGlobalMapping mapping) 470d4bb536fSBarry Smith { 4716849ba73SBarry Smith PetscErrorCode ierr; 47232dcc486SBarry Smith PetscInt i,*idx = mapping->indices,n = mapping->n,end,start,*globals; 473d4bb536fSBarry Smith 4743a40ed3dSBarry Smith PetscFunctionBegin; 475d4bb536fSBarry Smith end = 0; 476ec268f7cSJed Brown start = PETSC_MAX_INT; 477d4bb536fSBarry Smith 478d4bb536fSBarry Smith for (i=0; i<n; i++) { 479d4bb536fSBarry Smith if (idx[i] < 0) continue; 480d4bb536fSBarry Smith if (idx[i] < start) start = idx[i]; 481d4bb536fSBarry Smith if (idx[i] > end) end = idx[i]; 482d4bb536fSBarry Smith } 483d4bb536fSBarry Smith if (start > end) {start = 0; end = -1;} 484d4bb536fSBarry Smith mapping->globalstart = start; 485d4bb536fSBarry Smith mapping->globalend = end; 486d4bb536fSBarry Smith 487785e854fSJed Brown ierr = PetscMalloc1((end-start+2),&globals);CHKERRQ(ierr); 488b0a32e0cSBarry Smith mapping->globals = globals; 489f6e5521dSKarl Rupp for (i=0; i<end-start+1; i++) globals[i] = -1; 490d4bb536fSBarry Smith for (i=0; i<n; i++) { 491d4bb536fSBarry Smith if (idx[i] < 0) continue; 492d4bb536fSBarry Smith globals[idx[i] - start] = i; 493d4bb536fSBarry Smith } 494d4bb536fSBarry Smith 4953bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)mapping,(end-start+1)*sizeof(PetscInt));CHKERRQ(ierr); 4963a40ed3dSBarry Smith PetscFunctionReturn(0); 497d4bb536fSBarry Smith } 498d4bb536fSBarry Smith 4994a2ae208SSatish Balay #undef __FUNCT__ 5004a2ae208SSatish Balay #define __FUNCT__ "ISGlobalToLocalMappingApply" 501d4bb536fSBarry Smith /*@ 502a997ad1aSLois Curfman McInnes ISGlobalToLocalMappingApply - Provides the local numbering for a list of integers 503a997ad1aSLois Curfman McInnes specified with a global numbering. 504d4bb536fSBarry Smith 505b9cd556bSLois Curfman McInnes Not collective 506b9cd556bSLois Curfman McInnes 507d4bb536fSBarry Smith Input Parameters: 508b9cd556bSLois Curfman McInnes + mapping - mapping between local and global numbering 509d4bb536fSBarry Smith . type - IS_GTOLM_MASK - replaces global indices with no local value with -1 510d4bb536fSBarry Smith IS_GTOLM_DROP - drops the indices with no local value from the output list 511d4bb536fSBarry Smith . n - number of global indices to map 512b9cd556bSLois Curfman McInnes - idx - global indices to map 513d4bb536fSBarry Smith 514d4bb536fSBarry Smith Output Parameters: 515b9cd556bSLois Curfman McInnes + nout - number of indices in output array (if type == IS_GTOLM_MASK then nout = n) 516b9cd556bSLois Curfman McInnes - idxout - local index of each global index, one must pass in an array long enough 517e182c471SBarry Smith to hold all the indices. You can call ISGlobalToLocalMappingApply() with 5180298fd71SBarry Smith idxout == NULL to determine the required length (returned in nout) 519e182c471SBarry Smith and then allocate the required space and call ISGlobalToLocalMappingApply() 520e182c471SBarry Smith a second time to set the values. 521d4bb536fSBarry Smith 522b9cd556bSLois Curfman McInnes Notes: 5230298fd71SBarry Smith Either nout or idxout may be NULL. idx and idxout may be identical. 524d4bb536fSBarry Smith 5250f5bd95cSBarry Smith This is not scalable in memory usage. Each processor requires O(Nglobal) size 5260f5bd95cSBarry Smith array to compute these. 5270f5bd95cSBarry Smith 528a997ad1aSLois Curfman McInnes Level: advanced 529a997ad1aSLois Curfman McInnes 53032fd6b96SBarry Smith Developer Note: The manual page states that idx and idxout may be identical but the calling 53132fd6b96SBarry Smith sequence declares idx as const so it cannot be the same as idxout. 53232fd6b96SBarry Smith 533273d9f13SBarry Smith Concepts: mapping^global to local 534d4bb536fSBarry Smith 535d4bb536fSBarry Smith .seealso: ISLocalToGlobalMappingApply(), ISLocalToGlobalMappingCreate(), 536d4bb536fSBarry Smith ISLocalToGlobalMappingDestroy() 537d4bb536fSBarry Smith @*/ 5387087cfbeSBarry Smith PetscErrorCode ISGlobalToLocalMappingApply(ISLocalToGlobalMapping mapping,ISGlobalToLocalMappingType type, 53932dcc486SBarry Smith PetscInt n,const PetscInt idx[],PetscInt *nout,PetscInt idxout[]) 540d4bb536fSBarry Smith { 54132dcc486SBarry Smith PetscInt i,*globals,nf = 0,tmp,start,end; 5426849ba73SBarry Smith PetscErrorCode ierr; 543d4bb536fSBarry Smith 5443a40ed3dSBarry Smith PetscFunctionBegin; 5450700a824SBarry Smith PetscValidHeaderSpecific(mapping,IS_LTOGM_CLASSID,1); 546d4bb536fSBarry Smith if (!mapping->globals) { 547d4bb536fSBarry Smith ierr = ISGlobalToLocalMappingSetUp_Private(mapping);CHKERRQ(ierr); 548d4bb536fSBarry Smith } 549d4bb536fSBarry Smith globals = mapping->globals; 550d4bb536fSBarry Smith start = mapping->globalstart; 551d4bb536fSBarry Smith end = mapping->globalend; 552d4bb536fSBarry Smith 553d4bb536fSBarry Smith if (type == IS_GTOLM_MASK) { 554d4bb536fSBarry Smith if (idxout) { 555d4bb536fSBarry Smith for (i=0; i<n; i++) { 556d4bb536fSBarry Smith if (idx[i] < 0) idxout[i] = idx[i]; 557d4bb536fSBarry Smith else if (idx[i] < start) idxout[i] = -1; 558d4bb536fSBarry Smith else if (idx[i] > end) idxout[i] = -1; 559d4bb536fSBarry Smith else idxout[i] = globals[idx[i] - start]; 560d4bb536fSBarry Smith } 561d4bb536fSBarry Smith } 562d4bb536fSBarry Smith if (nout) *nout = n; 563d4bb536fSBarry Smith } else { 564d4bb536fSBarry Smith if (idxout) { 565d4bb536fSBarry Smith for (i=0; i<n; i++) { 566d4bb536fSBarry Smith if (idx[i] < 0) continue; 567d4bb536fSBarry Smith if (idx[i] < start) continue; 568d4bb536fSBarry Smith if (idx[i] > end) continue; 569d4bb536fSBarry Smith tmp = globals[idx[i] - start]; 570d4bb536fSBarry Smith if (tmp < 0) continue; 571d4bb536fSBarry Smith idxout[nf++] = tmp; 572d4bb536fSBarry Smith } 573d4bb536fSBarry Smith } else { 574d4bb536fSBarry Smith for (i=0; i<n; i++) { 575d4bb536fSBarry Smith if (idx[i] < 0) continue; 576d4bb536fSBarry Smith if (idx[i] < start) continue; 577d4bb536fSBarry Smith if (idx[i] > end) continue; 578d4bb536fSBarry Smith tmp = globals[idx[i] - start]; 579d4bb536fSBarry Smith if (tmp < 0) continue; 580d4bb536fSBarry Smith nf++; 581d4bb536fSBarry Smith } 582d4bb536fSBarry Smith } 583d4bb536fSBarry Smith if (nout) *nout = nf; 584d4bb536fSBarry Smith } 5853a40ed3dSBarry Smith PetscFunctionReturn(0); 586d4bb536fSBarry Smith } 58790f02eecSBarry Smith 5884a2ae208SSatish Balay #undef __FUNCT__ 5894a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingGetInfo" 59089d82c54SBarry Smith /*@C 59189d82c54SBarry Smith ISLocalToGlobalMappingGetInfo - Gets the neighbor information for each processor and 59289d82c54SBarry Smith each index shared by more than one processor 59389d82c54SBarry Smith 59489d82c54SBarry Smith Collective on ISLocalToGlobalMapping 59589d82c54SBarry Smith 59689d82c54SBarry Smith Input Parameters: 59789d82c54SBarry Smith . mapping - the mapping from local to global indexing 59889d82c54SBarry Smith 59989d82c54SBarry Smith Output Parameter: 60089d82c54SBarry Smith + nproc - number of processors that are connected to this one 60189d82c54SBarry Smith . proc - neighboring processors 60207b52d57SBarry Smith . numproc - number of indices for each subdomain (processor) 6033463a7baSJed Brown - indices - indices of nodes (in local numbering) shared with neighbors (sorted by global numbering) 60489d82c54SBarry Smith 60589d82c54SBarry Smith Level: advanced 60689d82c54SBarry Smith 607273d9f13SBarry Smith Concepts: mapping^local to global 60889d82c54SBarry Smith 6092cfcea29SBarry Smith Fortran Usage: 6102cfcea29SBarry Smith $ ISLocalToGlobalMpngGetInfoSize(ISLocalToGlobalMapping,PetscInt nproc,PetscInt numprocmax,ierr) followed by 6112cfcea29SBarry Smith $ ISLocalToGlobalMappingGetInfo(ISLocalToGlobalMapping,PetscInt nproc, PetscInt procs[nproc],PetscInt numprocs[nproc], 6122cfcea29SBarry Smith PetscInt indices[nproc][numprocmax],ierr) 6132cfcea29SBarry Smith There is no ISLocalToGlobalMappingRestoreInfo() in Fortran. You must make sure that procs[], numprocs[] and 6142cfcea29SBarry Smith indices[][] are large enough arrays, either by allocating them dynamically or defining static ones large enough. 6152cfcea29SBarry Smith 6162cfcea29SBarry Smith 61707b52d57SBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreateIS(), ISLocalToGlobalMappingCreate(), 61807b52d57SBarry Smith ISLocalToGlobalMappingRestoreInfo() 61989d82c54SBarry Smith @*/ 6207087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingGetInfo(ISLocalToGlobalMapping mapping,PetscInt *nproc,PetscInt *procs[],PetscInt *numprocs[],PetscInt **indices[]) 62189d82c54SBarry Smith { 6226849ba73SBarry Smith PetscErrorCode ierr; 62397f1f81fSBarry Smith PetscMPIInt size,rank,tag1,tag2,tag3,*len,*source,imdex; 62432dcc486SBarry Smith PetscInt i,n = mapping->n,Ng,ng,max = 0,*lindices = mapping->indices; 62532dcc486SBarry Smith PetscInt *nprocs,*owner,nsends,*sends,j,*starts,nmax,nrecvs,*recvs,proc; 62697f1f81fSBarry Smith PetscInt cnt,scale,*ownedsenders,*nownedsenders,rstart,nowned; 62732dcc486SBarry Smith PetscInt node,nownedm,nt,*sends2,nsends2,*starts2,*lens2,*dest,nrecvs2,*starts3,*recvs2,k,*bprocs,*tmp; 62832dcc486SBarry Smith PetscInt first_procs,first_numprocs,*first_indices; 62989d82c54SBarry Smith MPI_Request *recv_waits,*send_waits; 63030dcb7c9SBarry Smith MPI_Status recv_status,*send_status,*recv_statuses; 631ce94432eSBarry Smith MPI_Comm comm; 632ace3abfcSBarry Smith PetscBool debug = PETSC_FALSE; 63389d82c54SBarry Smith 63489d82c54SBarry Smith PetscFunctionBegin; 6350700a824SBarry Smith PetscValidHeaderSpecific(mapping,IS_LTOGM_CLASSID,1); 636ce94432eSBarry Smith ierr = PetscObjectGetComm((PetscObject)mapping,&comm);CHKERRQ(ierr); 63724cf384cSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 63824cf384cSBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 63924cf384cSBarry Smith if (size == 1) { 64024cf384cSBarry Smith *nproc = 0; 6410298fd71SBarry Smith *procs = NULL; 64232dcc486SBarry Smith ierr = PetscMalloc(sizeof(PetscInt),numprocs);CHKERRQ(ierr); 6431e2105dcSBarry Smith (*numprocs)[0] = 0; 64432dcc486SBarry Smith ierr = PetscMalloc(sizeof(PetscInt*),indices);CHKERRQ(ierr); 6450298fd71SBarry Smith (*indices)[0] = NULL; 64624cf384cSBarry Smith PetscFunctionReturn(0); 64724cf384cSBarry Smith } 64824cf384cSBarry Smith 6490298fd71SBarry Smith ierr = PetscOptionsGetBool(NULL,"-islocaltoglobalmappinggetinfo_debug",&debug,NULL);CHKERRQ(ierr); 65007b52d57SBarry Smith 6513677ff5aSBarry Smith /* 6523677ff5aSBarry Smith Notes on ISLocalToGlobalMappingGetInfo 6533677ff5aSBarry Smith 6543677ff5aSBarry Smith globally owned node - the nodes that have been assigned to this processor in global 6553677ff5aSBarry Smith numbering, just for this routine. 6563677ff5aSBarry Smith 6573677ff5aSBarry Smith nontrivial globally owned node - node assigned to this processor that is on a subdomain 6583677ff5aSBarry Smith boundary (i.e. is has more than one local owner) 6593677ff5aSBarry Smith 6603677ff5aSBarry Smith locally owned node - node that exists on this processors subdomain 6613677ff5aSBarry Smith 6623677ff5aSBarry Smith nontrivial locally owned node - node that is not in the interior (i.e. has more than one 6633677ff5aSBarry Smith local subdomain 6643677ff5aSBarry Smith */ 66524cf384cSBarry Smith ierr = PetscObjectGetNewTag((PetscObject)mapping,&tag1);CHKERRQ(ierr); 66624cf384cSBarry Smith ierr = PetscObjectGetNewTag((PetscObject)mapping,&tag2);CHKERRQ(ierr); 66724cf384cSBarry Smith ierr = PetscObjectGetNewTag((PetscObject)mapping,&tag3);CHKERRQ(ierr); 66889d82c54SBarry Smith 66989d82c54SBarry Smith for (i=0; i<n; i++) { 67089d82c54SBarry Smith if (lindices[i] > max) max = lindices[i]; 67189d82c54SBarry Smith } 67232dcc486SBarry Smith ierr = MPI_Allreduce(&max,&Ng,1,MPIU_INT,MPI_MAX,comm);CHKERRQ(ierr); 67378058e43SBarry Smith Ng++; 67489d82c54SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 67589d82c54SBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 676bc8ff85bSBarry Smith scale = Ng/size + 1; 677a2e34c3dSBarry Smith ng = scale; if (rank == size-1) ng = Ng - scale*(size-1); ng = PetscMax(1,ng); 678caba0dd0SBarry Smith rstart = scale*rank; 67989d82c54SBarry Smith 68089d82c54SBarry Smith /* determine ownership ranges of global indices */ 681785e854fSJed Brown ierr = PetscMalloc1(2*size,&nprocs);CHKERRQ(ierr); 68232dcc486SBarry Smith ierr = PetscMemzero(nprocs,2*size*sizeof(PetscInt));CHKERRQ(ierr); 68389d82c54SBarry Smith 68489d82c54SBarry Smith /* determine owners of each local node */ 685785e854fSJed Brown ierr = PetscMalloc1(n,&owner);CHKERRQ(ierr); 68689d82c54SBarry Smith for (i=0; i<n; i++) { 6873677ff5aSBarry Smith proc = lindices[i]/scale; /* processor that globally owns this index */ 68827c402fcSBarry Smith nprocs[2*proc+1] = 1; /* processor globally owns at least one of ours */ 6893677ff5aSBarry Smith owner[i] = proc; 69027c402fcSBarry Smith nprocs[2*proc]++; /* count of how many that processor globally owns of ours */ 69189d82c54SBarry Smith } 69227c402fcSBarry Smith nsends = 0; for (i=0; i<size; i++) nsends += nprocs[2*i+1]; 6937904a332SBarry Smith ierr = PetscInfo1(mapping,"Number of global owners for my local data %D\n",nsends);CHKERRQ(ierr); 69489d82c54SBarry Smith 69589d82c54SBarry Smith /* inform other processors of number of messages and max length*/ 69627c402fcSBarry Smith ierr = PetscMaxSum(comm,nprocs,&nmax,&nrecvs);CHKERRQ(ierr); 6977904a332SBarry Smith ierr = PetscInfo1(mapping,"Number of local owners for my global data %D\n",nrecvs);CHKERRQ(ierr); 69889d82c54SBarry Smith 69989d82c54SBarry Smith /* post receives for owned rows */ 700785e854fSJed Brown ierr = PetscMalloc1((2*nrecvs+1)*(nmax+1),&recvs);CHKERRQ(ierr); 701785e854fSJed Brown ierr = PetscMalloc1((nrecvs+1),&recv_waits);CHKERRQ(ierr); 70289d82c54SBarry Smith for (i=0; i<nrecvs; i++) { 70332dcc486SBarry Smith ierr = MPI_Irecv(recvs+2*nmax*i,2*nmax,MPIU_INT,MPI_ANY_SOURCE,tag1,comm,recv_waits+i);CHKERRQ(ierr); 70489d82c54SBarry Smith } 70589d82c54SBarry Smith 70689d82c54SBarry Smith /* pack messages containing lists of local nodes to owners */ 707785e854fSJed Brown ierr = PetscMalloc1((2*n+1),&sends);CHKERRQ(ierr); 708785e854fSJed Brown ierr = PetscMalloc1((size+1),&starts);CHKERRQ(ierr); 70989d82c54SBarry Smith starts[0] = 0; 710f6e5521dSKarl Rupp for (i=1; i<size; i++) starts[i] = starts[i-1] + 2*nprocs[2*i-2]; 71189d82c54SBarry Smith for (i=0; i<n; i++) { 71289d82c54SBarry Smith sends[starts[owner[i]]++] = lindices[i]; 71330dcb7c9SBarry Smith sends[starts[owner[i]]++] = i; 71489d82c54SBarry Smith } 71589d82c54SBarry Smith ierr = PetscFree(owner);CHKERRQ(ierr); 71689d82c54SBarry Smith starts[0] = 0; 717f6e5521dSKarl Rupp for (i=1; i<size; i++) starts[i] = starts[i-1] + 2*nprocs[2*i-2]; 71889d82c54SBarry Smith 71989d82c54SBarry Smith /* send the messages */ 720785e854fSJed Brown ierr = PetscMalloc1((nsends+1),&send_waits);CHKERRQ(ierr); 721785e854fSJed Brown ierr = PetscMalloc1((nsends+1),&dest);CHKERRQ(ierr); 72289d82c54SBarry Smith cnt = 0; 72389d82c54SBarry Smith for (i=0; i<size; i++) { 72427c402fcSBarry Smith if (nprocs[2*i]) { 72532dcc486SBarry Smith ierr = MPI_Isend(sends+starts[i],2*nprocs[2*i],MPIU_INT,i,tag1,comm,send_waits+cnt);CHKERRQ(ierr); 72630dcb7c9SBarry Smith dest[cnt] = i; 72789d82c54SBarry Smith cnt++; 72889d82c54SBarry Smith } 72989d82c54SBarry Smith } 73089d82c54SBarry Smith ierr = PetscFree(starts);CHKERRQ(ierr); 73189d82c54SBarry Smith 73289d82c54SBarry Smith /* wait on receives */ 733785e854fSJed Brown ierr = PetscMalloc1((nrecvs+1),&source);CHKERRQ(ierr); 734785e854fSJed Brown ierr = PetscMalloc1((nrecvs+1),&len);CHKERRQ(ierr); 73589d82c54SBarry Smith cnt = nrecvs; 736785e854fSJed Brown ierr = PetscMalloc1((ng+1),&nownedsenders);CHKERRQ(ierr); 73732dcc486SBarry Smith ierr = PetscMemzero(nownedsenders,ng*sizeof(PetscInt));CHKERRQ(ierr); 73889d82c54SBarry Smith while (cnt) { 73989d82c54SBarry Smith ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr); 74089d82c54SBarry Smith /* unpack receives into our local space */ 74132dcc486SBarry Smith ierr = MPI_Get_count(&recv_status,MPIU_INT,&len[imdex]);CHKERRQ(ierr); 74289d82c54SBarry Smith source[imdex] = recv_status.MPI_SOURCE; 74330dcb7c9SBarry Smith len[imdex] = len[imdex]/2; 744caba0dd0SBarry Smith /* count how many local owners for each of my global owned indices */ 74530dcb7c9SBarry Smith for (i=0; i<len[imdex]; i++) nownedsenders[recvs[2*imdex*nmax+2*i]-rstart]++; 74689d82c54SBarry Smith cnt--; 74789d82c54SBarry Smith } 74889d82c54SBarry Smith ierr = PetscFree(recv_waits);CHKERRQ(ierr); 74989d82c54SBarry Smith 75030dcb7c9SBarry Smith /* count how many globally owned indices are on an edge multiplied by how many processors own them. */ 751bc8ff85bSBarry Smith nowned = 0; 752bc8ff85bSBarry Smith nownedm = 0; 753bc8ff85bSBarry Smith for (i=0; i<ng; i++) { 754bc8ff85bSBarry Smith if (nownedsenders[i] > 1) {nownedm += nownedsenders[i]; nowned++;} 755bc8ff85bSBarry Smith } 756bc8ff85bSBarry Smith 757bc8ff85bSBarry Smith /* create single array to contain rank of all local owners of each globally owned index */ 758785e854fSJed Brown ierr = PetscMalloc1((nownedm+1),&ownedsenders);CHKERRQ(ierr); 759785e854fSJed Brown ierr = PetscMalloc1((ng+1),&starts);CHKERRQ(ierr); 760bc8ff85bSBarry Smith starts[0] = 0; 761bc8ff85bSBarry Smith for (i=1; i<ng; i++) { 762bc8ff85bSBarry Smith if (nownedsenders[i-1] > 1) starts[i] = starts[i-1] + nownedsenders[i-1]; 763bc8ff85bSBarry Smith else starts[i] = starts[i-1]; 764bc8ff85bSBarry Smith } 765bc8ff85bSBarry Smith 76630dcb7c9SBarry Smith /* for each nontrival globally owned node list all arriving processors */ 767bc8ff85bSBarry Smith for (i=0; i<nrecvs; i++) { 768bc8ff85bSBarry Smith for (j=0; j<len[i]; j++) { 76930dcb7c9SBarry Smith node = recvs[2*i*nmax+2*j]-rstart; 770f6e5521dSKarl Rupp if (nownedsenders[node] > 1) ownedsenders[starts[node]++] = source[i]; 771bc8ff85bSBarry Smith } 772bc8ff85bSBarry Smith } 773bc8ff85bSBarry Smith 77407b52d57SBarry Smith if (debug) { /* ----------------------------------- */ 77530dcb7c9SBarry Smith starts[0] = 0; 77630dcb7c9SBarry Smith for (i=1; i<ng; i++) { 77730dcb7c9SBarry Smith if (nownedsenders[i-1] > 1) starts[i] = starts[i-1] + nownedsenders[i-1]; 77830dcb7c9SBarry Smith else starts[i] = starts[i-1]; 77930dcb7c9SBarry Smith } 78030dcb7c9SBarry Smith for (i=0; i<ng; i++) { 78130dcb7c9SBarry Smith if (nownedsenders[i] > 1) { 7827904a332SBarry Smith ierr = PetscSynchronizedPrintf(comm,"[%d] global node %D local owner processors: ",rank,i+rstart);CHKERRQ(ierr); 78330dcb7c9SBarry Smith for (j=0; j<nownedsenders[i]; j++) { 7847904a332SBarry Smith ierr = PetscSynchronizedPrintf(comm,"%D ",ownedsenders[starts[i]+j]);CHKERRQ(ierr); 78530dcb7c9SBarry Smith } 78630dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"\n");CHKERRQ(ierr); 78730dcb7c9SBarry Smith } 78830dcb7c9SBarry Smith } 7890ec8b6e3SBarry Smith ierr = PetscSynchronizedFlush(comm,PETSC_STDOUT);CHKERRQ(ierr); 79007b52d57SBarry Smith } /* ----------------------------------- */ 79130dcb7c9SBarry Smith 7923677ff5aSBarry Smith /* wait on original sends */ 7933a96401aSBarry Smith if (nsends) { 794785e854fSJed Brown ierr = PetscMalloc1(nsends,&send_status);CHKERRQ(ierr); 7953a96401aSBarry Smith ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr); 7963a96401aSBarry Smith ierr = PetscFree(send_status);CHKERRQ(ierr); 7973a96401aSBarry Smith } 79889d82c54SBarry Smith ierr = PetscFree(send_waits);CHKERRQ(ierr); 7993a96401aSBarry Smith ierr = PetscFree(sends);CHKERRQ(ierr); 8003677ff5aSBarry Smith ierr = PetscFree(nprocs);CHKERRQ(ierr); 8013677ff5aSBarry Smith 8023677ff5aSBarry Smith /* pack messages to send back to local owners */ 80330dcb7c9SBarry Smith starts[0] = 0; 80430dcb7c9SBarry Smith for (i=1; i<ng; i++) { 80530dcb7c9SBarry Smith if (nownedsenders[i-1] > 1) starts[i] = starts[i-1] + nownedsenders[i-1]; 80630dcb7c9SBarry Smith else starts[i] = starts[i-1]; 80730dcb7c9SBarry Smith } 80830dcb7c9SBarry Smith nsends2 = nrecvs; 809785e854fSJed Brown ierr = PetscMalloc1((nsends2+1),&nprocs);CHKERRQ(ierr); /* length of each message */ 81030dcb7c9SBarry Smith for (i=0; i<nrecvs; i++) { 81130dcb7c9SBarry Smith nprocs[i] = 1; 81230dcb7c9SBarry Smith for (j=0; j<len[i]; j++) { 81330dcb7c9SBarry Smith node = recvs[2*i*nmax+2*j]-rstart; 814f6e5521dSKarl Rupp if (nownedsenders[node] > 1) nprocs[i] += 2 + nownedsenders[node]; 81530dcb7c9SBarry Smith } 81630dcb7c9SBarry Smith } 817f6e5521dSKarl Rupp nt = 0; 818f6e5521dSKarl Rupp for (i=0; i<nsends2; i++) nt += nprocs[i]; 819f6e5521dSKarl Rupp 820785e854fSJed Brown ierr = PetscMalloc1((nt+1),&sends2);CHKERRQ(ierr); 821785e854fSJed Brown ierr = PetscMalloc1((nsends2+1),&starts2);CHKERRQ(ierr); 822f6e5521dSKarl Rupp 823f6e5521dSKarl Rupp starts2[0] = 0; 824f6e5521dSKarl Rupp for (i=1; i<nsends2; i++) starts2[i] = starts2[i-1] + nprocs[i-1]; 82530dcb7c9SBarry Smith /* 82630dcb7c9SBarry Smith Each message is 1 + nprocs[i] long, and consists of 82730dcb7c9SBarry Smith (0) the number of nodes being sent back 82830dcb7c9SBarry Smith (1) the local node number, 82930dcb7c9SBarry Smith (2) the number of processors sharing it, 83030dcb7c9SBarry Smith (3) the processors sharing it 83130dcb7c9SBarry Smith */ 83230dcb7c9SBarry Smith for (i=0; i<nsends2; i++) { 83330dcb7c9SBarry Smith cnt = 1; 83430dcb7c9SBarry Smith sends2[starts2[i]] = 0; 83530dcb7c9SBarry Smith for (j=0; j<len[i]; j++) { 83630dcb7c9SBarry Smith node = recvs[2*i*nmax+2*j]-rstart; 83730dcb7c9SBarry Smith if (nownedsenders[node] > 1) { 83830dcb7c9SBarry Smith sends2[starts2[i]]++; 83930dcb7c9SBarry Smith sends2[starts2[i]+cnt++] = recvs[2*i*nmax+2*j+1]; 84030dcb7c9SBarry Smith sends2[starts2[i]+cnt++] = nownedsenders[node]; 84132dcc486SBarry Smith ierr = PetscMemcpy(&sends2[starts2[i]+cnt],&ownedsenders[starts[node]],nownedsenders[node]*sizeof(PetscInt));CHKERRQ(ierr); 84230dcb7c9SBarry Smith cnt += nownedsenders[node]; 84330dcb7c9SBarry Smith } 84430dcb7c9SBarry Smith } 84530dcb7c9SBarry Smith } 84630dcb7c9SBarry Smith 84730dcb7c9SBarry Smith /* receive the message lengths */ 84830dcb7c9SBarry Smith nrecvs2 = nsends; 849785e854fSJed Brown ierr = PetscMalloc1((nrecvs2+1),&lens2);CHKERRQ(ierr); 850785e854fSJed Brown ierr = PetscMalloc1((nrecvs2+1),&starts3);CHKERRQ(ierr); 851785e854fSJed Brown ierr = PetscMalloc1((nrecvs2+1),&recv_waits);CHKERRQ(ierr); 85230dcb7c9SBarry Smith for (i=0; i<nrecvs2; i++) { 853d44834fbSBarry Smith ierr = MPI_Irecv(&lens2[i],1,MPIU_INT,dest[i],tag2,comm,recv_waits+i);CHKERRQ(ierr); 85430dcb7c9SBarry Smith } 855d44834fbSBarry Smith 8568a8e0b3aSBarry Smith /* send the message lengths */ 8578a8e0b3aSBarry Smith for (i=0; i<nsends2; i++) { 8588a8e0b3aSBarry Smith ierr = MPI_Send(&nprocs[i],1,MPIU_INT,source[i],tag2,comm);CHKERRQ(ierr); 8598a8e0b3aSBarry Smith } 8608a8e0b3aSBarry Smith 861d44834fbSBarry Smith /* wait on receives of lens */ 8620c468ba9SBarry Smith if (nrecvs2) { 863785e854fSJed Brown ierr = PetscMalloc1(nrecvs2,&recv_statuses);CHKERRQ(ierr); 864d44834fbSBarry Smith ierr = MPI_Waitall(nrecvs2,recv_waits,recv_statuses);CHKERRQ(ierr); 865d44834fbSBarry Smith ierr = PetscFree(recv_statuses);CHKERRQ(ierr); 8660c468ba9SBarry Smith } 867a2ea699eSBarry Smith ierr = PetscFree(recv_waits);CHKERRQ(ierr); 868d44834fbSBarry Smith 86930dcb7c9SBarry Smith starts3[0] = 0; 870d44834fbSBarry Smith nt = 0; 87130dcb7c9SBarry Smith for (i=0; i<nrecvs2-1; i++) { 87230dcb7c9SBarry Smith starts3[i+1] = starts3[i] + lens2[i]; 873d44834fbSBarry Smith nt += lens2[i]; 87430dcb7c9SBarry Smith } 87576466f69SStefano Zampini if (nrecvs2) nt += lens2[nrecvs2-1]; 876d44834fbSBarry Smith 877785e854fSJed Brown ierr = PetscMalloc1((nt+1),&recvs2);CHKERRQ(ierr); 878785e854fSJed Brown ierr = PetscMalloc1((nrecvs2+1),&recv_waits);CHKERRQ(ierr); 87952b72c4aSBarry Smith for (i=0; i<nrecvs2; i++) { 88032dcc486SBarry Smith ierr = MPI_Irecv(recvs2+starts3[i],lens2[i],MPIU_INT,dest[i],tag3,comm,recv_waits+i);CHKERRQ(ierr); 88130dcb7c9SBarry Smith } 88230dcb7c9SBarry Smith 88330dcb7c9SBarry Smith /* send the messages */ 884785e854fSJed Brown ierr = PetscMalloc1((nsends2+1),&send_waits);CHKERRQ(ierr); 88530dcb7c9SBarry Smith for (i=0; i<nsends2; i++) { 88632dcc486SBarry Smith ierr = MPI_Isend(sends2+starts2[i],nprocs[i],MPIU_INT,source[i],tag3,comm,send_waits+i);CHKERRQ(ierr); 88730dcb7c9SBarry Smith } 88830dcb7c9SBarry Smith 88930dcb7c9SBarry Smith /* wait on receives */ 8900c468ba9SBarry Smith if (nrecvs2) { 891785e854fSJed Brown ierr = PetscMalloc1(nrecvs2,&recv_statuses);CHKERRQ(ierr); 89230dcb7c9SBarry Smith ierr = MPI_Waitall(nrecvs2,recv_waits,recv_statuses);CHKERRQ(ierr); 89330dcb7c9SBarry Smith ierr = PetscFree(recv_statuses);CHKERRQ(ierr); 8940c468ba9SBarry Smith } 89530dcb7c9SBarry Smith ierr = PetscFree(recv_waits);CHKERRQ(ierr); 89630dcb7c9SBarry Smith ierr = PetscFree(nprocs);CHKERRQ(ierr); 89730dcb7c9SBarry Smith 89807b52d57SBarry Smith if (debug) { /* ----------------------------------- */ 89930dcb7c9SBarry Smith cnt = 0; 90030dcb7c9SBarry Smith for (i=0; i<nrecvs2; i++) { 90130dcb7c9SBarry Smith nt = recvs2[cnt++]; 90230dcb7c9SBarry Smith for (j=0; j<nt; j++) { 9037904a332SBarry Smith ierr = PetscSynchronizedPrintf(comm,"[%d] local node %D number of subdomains %D: ",rank,recvs2[cnt],recvs2[cnt+1]);CHKERRQ(ierr); 90430dcb7c9SBarry Smith for (k=0; k<recvs2[cnt+1]; k++) { 9057904a332SBarry Smith ierr = PetscSynchronizedPrintf(comm,"%D ",recvs2[cnt+2+k]);CHKERRQ(ierr); 90630dcb7c9SBarry Smith } 90730dcb7c9SBarry Smith cnt += 2 + recvs2[cnt+1]; 90830dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"\n");CHKERRQ(ierr); 90930dcb7c9SBarry Smith } 91030dcb7c9SBarry Smith } 9110ec8b6e3SBarry Smith ierr = PetscSynchronizedFlush(comm,PETSC_STDOUT);CHKERRQ(ierr); 91207b52d57SBarry Smith } /* ----------------------------------- */ 91330dcb7c9SBarry Smith 91430dcb7c9SBarry Smith /* count number subdomains for each local node */ 915785e854fSJed Brown ierr = PetscMalloc1(size,&nprocs);CHKERRQ(ierr); 91632dcc486SBarry Smith ierr = PetscMemzero(nprocs,size*sizeof(PetscInt));CHKERRQ(ierr); 91730dcb7c9SBarry Smith cnt = 0; 91830dcb7c9SBarry Smith for (i=0; i<nrecvs2; i++) { 91930dcb7c9SBarry Smith nt = recvs2[cnt++]; 92030dcb7c9SBarry Smith for (j=0; j<nt; j++) { 921f6e5521dSKarl Rupp for (k=0; k<recvs2[cnt+1]; k++) nprocs[recvs2[cnt+2+k]]++; 92230dcb7c9SBarry Smith cnt += 2 + recvs2[cnt+1]; 92330dcb7c9SBarry Smith } 92430dcb7c9SBarry Smith } 92530dcb7c9SBarry Smith nt = 0; for (i=0; i<size; i++) nt += (nprocs[i] > 0); 92630dcb7c9SBarry Smith *nproc = nt; 927785e854fSJed Brown ierr = PetscMalloc1((nt+1),procs);CHKERRQ(ierr); 928785e854fSJed Brown ierr = PetscMalloc1((nt+1),numprocs);CHKERRQ(ierr); 929785e854fSJed Brown ierr = PetscMalloc1((nt+1),indices);CHKERRQ(ierr); 9300298fd71SBarry Smith for (i=0;i<nt+1;i++) (*indices)[i]=NULL; 931785e854fSJed Brown ierr = PetscMalloc1(size,&bprocs);CHKERRQ(ierr); 93230dcb7c9SBarry Smith cnt = 0; 93330dcb7c9SBarry Smith for (i=0; i<size; i++) { 93430dcb7c9SBarry Smith if (nprocs[i] > 0) { 93530dcb7c9SBarry Smith bprocs[i] = cnt; 93630dcb7c9SBarry Smith (*procs)[cnt] = i; 93730dcb7c9SBarry Smith (*numprocs)[cnt] = nprocs[i]; 938785e854fSJed Brown ierr = PetscMalloc1(nprocs[i],&(*indices)[cnt]);CHKERRQ(ierr); 93930dcb7c9SBarry Smith cnt++; 94030dcb7c9SBarry Smith } 94130dcb7c9SBarry Smith } 94230dcb7c9SBarry Smith 94330dcb7c9SBarry Smith /* make the list of subdomains for each nontrivial local node */ 94432dcc486SBarry Smith ierr = PetscMemzero(*numprocs,nt*sizeof(PetscInt));CHKERRQ(ierr); 94530dcb7c9SBarry Smith cnt = 0; 94630dcb7c9SBarry Smith for (i=0; i<nrecvs2; i++) { 94730dcb7c9SBarry Smith nt = recvs2[cnt++]; 94830dcb7c9SBarry Smith for (j=0; j<nt; j++) { 949f6e5521dSKarl Rupp for (k=0; k<recvs2[cnt+1]; k++) (*indices)[bprocs[recvs2[cnt+2+k]]][(*numprocs)[bprocs[recvs2[cnt+2+k]]]++] = recvs2[cnt]; 95030dcb7c9SBarry Smith cnt += 2 + recvs2[cnt+1]; 95130dcb7c9SBarry Smith } 95230dcb7c9SBarry Smith } 95330dcb7c9SBarry Smith ierr = PetscFree(bprocs);CHKERRQ(ierr); 95407b52d57SBarry Smith ierr = PetscFree(recvs2);CHKERRQ(ierr); 95530dcb7c9SBarry Smith 95607b52d57SBarry Smith /* sort the node indexing by their global numbers */ 95707b52d57SBarry Smith nt = *nproc; 95807b52d57SBarry Smith for (i=0; i<nt; i++) { 959785e854fSJed Brown ierr = PetscMalloc1(((*numprocs)[i]),&tmp);CHKERRQ(ierr); 960f6e5521dSKarl Rupp for (j=0; j<(*numprocs)[i]; j++) tmp[j] = lindices[(*indices)[i][j]]; 96107b52d57SBarry Smith ierr = PetscSortIntWithArray((*numprocs)[i],tmp,(*indices)[i]);CHKERRQ(ierr); 96207b52d57SBarry Smith ierr = PetscFree(tmp);CHKERRQ(ierr); 96307b52d57SBarry Smith } 96407b52d57SBarry Smith 96507b52d57SBarry Smith if (debug) { /* ----------------------------------- */ 96630dcb7c9SBarry Smith nt = *nproc; 96730dcb7c9SBarry Smith for (i=0; i<nt; i++) { 9687904a332SBarry Smith ierr = PetscSynchronizedPrintf(comm,"[%d] subdomain %D number of indices %D: ",rank,(*procs)[i],(*numprocs)[i]);CHKERRQ(ierr); 96930dcb7c9SBarry Smith for (j=0; j<(*numprocs)[i]; j++) { 9707904a332SBarry Smith ierr = PetscSynchronizedPrintf(comm,"%D ",(*indices)[i][j]);CHKERRQ(ierr); 97130dcb7c9SBarry Smith } 97230dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"\n");CHKERRQ(ierr); 97330dcb7c9SBarry Smith } 9740ec8b6e3SBarry Smith ierr = PetscSynchronizedFlush(comm,PETSC_STDOUT);CHKERRQ(ierr); 97507b52d57SBarry Smith } /* ----------------------------------- */ 97630dcb7c9SBarry Smith 97730dcb7c9SBarry Smith /* wait on sends */ 97830dcb7c9SBarry Smith if (nsends2) { 979785e854fSJed Brown ierr = PetscMalloc1(nsends2,&send_status);CHKERRQ(ierr); 98030dcb7c9SBarry Smith ierr = MPI_Waitall(nsends2,send_waits,send_status);CHKERRQ(ierr); 98130dcb7c9SBarry Smith ierr = PetscFree(send_status);CHKERRQ(ierr); 98230dcb7c9SBarry Smith } 98330dcb7c9SBarry Smith 98430dcb7c9SBarry Smith ierr = PetscFree(starts3);CHKERRQ(ierr); 98530dcb7c9SBarry Smith ierr = PetscFree(dest);CHKERRQ(ierr); 98630dcb7c9SBarry Smith ierr = PetscFree(send_waits);CHKERRQ(ierr); 9873677ff5aSBarry Smith 988bc8ff85bSBarry Smith ierr = PetscFree(nownedsenders);CHKERRQ(ierr); 989bc8ff85bSBarry Smith ierr = PetscFree(ownedsenders);CHKERRQ(ierr); 990bc8ff85bSBarry Smith ierr = PetscFree(starts);CHKERRQ(ierr); 99130dcb7c9SBarry Smith ierr = PetscFree(starts2);CHKERRQ(ierr); 99230dcb7c9SBarry Smith ierr = PetscFree(lens2);CHKERRQ(ierr); 99389d82c54SBarry Smith 99489d82c54SBarry Smith ierr = PetscFree(source);CHKERRQ(ierr); 99597f1f81fSBarry Smith ierr = PetscFree(len);CHKERRQ(ierr); 99689d82c54SBarry Smith ierr = PetscFree(recvs);CHKERRQ(ierr); 9973a96401aSBarry Smith ierr = PetscFree(nprocs);CHKERRQ(ierr); 99830dcb7c9SBarry Smith ierr = PetscFree(sends2);CHKERRQ(ierr); 99924cf384cSBarry Smith 100024cf384cSBarry Smith /* put the information about myself as the first entry in the list */ 100124cf384cSBarry Smith first_procs = (*procs)[0]; 100224cf384cSBarry Smith first_numprocs = (*numprocs)[0]; 100324cf384cSBarry Smith first_indices = (*indices)[0]; 100424cf384cSBarry Smith for (i=0; i<*nproc; i++) { 100524cf384cSBarry Smith if ((*procs)[i] == rank) { 100624cf384cSBarry Smith (*procs)[0] = (*procs)[i]; 100724cf384cSBarry Smith (*numprocs)[0] = (*numprocs)[i]; 100824cf384cSBarry Smith (*indices)[0] = (*indices)[i]; 100924cf384cSBarry Smith (*procs)[i] = first_procs; 101024cf384cSBarry Smith (*numprocs)[i] = first_numprocs; 101124cf384cSBarry Smith (*indices)[i] = first_indices; 101224cf384cSBarry Smith break; 101324cf384cSBarry Smith } 101424cf384cSBarry Smith } 101589d82c54SBarry Smith PetscFunctionReturn(0); 101689d82c54SBarry Smith } 101789d82c54SBarry Smith 10184a2ae208SSatish Balay #undef __FUNCT__ 10194a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingRestoreInfo" 102007b52d57SBarry Smith /*@C 102107b52d57SBarry Smith ISLocalToGlobalMappingRestoreInfo - Frees the memory allocated by ISLocalToGlobalMappingGetInfo() 102289d82c54SBarry Smith 102307b52d57SBarry Smith Collective on ISLocalToGlobalMapping 102407b52d57SBarry Smith 102507b52d57SBarry Smith Input Parameters: 102607b52d57SBarry Smith . mapping - the mapping from local to global indexing 102707b52d57SBarry Smith 102807b52d57SBarry Smith Output Parameter: 102907b52d57SBarry Smith + nproc - number of processors that are connected to this one 103007b52d57SBarry Smith . proc - neighboring processors 103107b52d57SBarry Smith . numproc - number of indices for each processor 103207b52d57SBarry Smith - indices - indices of local nodes shared with neighbor (sorted by global numbering) 103307b52d57SBarry Smith 103407b52d57SBarry Smith Level: advanced 103507b52d57SBarry Smith 103607b52d57SBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreateIS(), ISLocalToGlobalMappingCreate(), 103707b52d57SBarry Smith ISLocalToGlobalMappingGetInfo() 103807b52d57SBarry Smith @*/ 10397087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingRestoreInfo(ISLocalToGlobalMapping mapping,PetscInt *nproc,PetscInt *procs[],PetscInt *numprocs[],PetscInt **indices[]) 104007b52d57SBarry Smith { 10416849ba73SBarry Smith PetscErrorCode ierr; 104232dcc486SBarry Smith PetscInt i; 104307b52d57SBarry Smith 104407b52d57SBarry Smith PetscFunctionBegin; 104505b42c5fSBarry Smith ierr = PetscFree(*procs);CHKERRQ(ierr); 104605b42c5fSBarry Smith ierr = PetscFree(*numprocs);CHKERRQ(ierr); 104700ff320aSBarry Smith if (*indices) { 104805b42c5fSBarry Smith ierr = PetscFree((*indices)[0]);CHKERRQ(ierr); 104900ff320aSBarry Smith for (i=1; i<*nproc; i++) { 105005b42c5fSBarry Smith ierr = PetscFree((*indices)[i]);CHKERRQ(ierr); 105107b52d57SBarry Smith } 105207b52d57SBarry Smith ierr = PetscFree(*indices);CHKERRQ(ierr); 105324cf384cSBarry Smith } 105407b52d57SBarry Smith PetscFunctionReturn(0); 105507b52d57SBarry Smith } 105686994e45SJed Brown 105786994e45SJed Brown #undef __FUNCT__ 105886994e45SJed Brown #define __FUNCT__ "ISLocalToGlobalMappingGetIndices" 105986994e45SJed Brown /*@C 106086994e45SJed Brown ISLocalToGlobalMappingGetIndices - Get global indices for every local point 106186994e45SJed Brown 106286994e45SJed Brown Not Collective 106386994e45SJed Brown 106486994e45SJed Brown Input Arguments: 106586994e45SJed Brown . ltog - local to global mapping 106686994e45SJed Brown 106786994e45SJed Brown Output Arguments: 106886994e45SJed Brown . array - array of indices 106986994e45SJed Brown 107086994e45SJed Brown Level: advanced 107186994e45SJed Brown 107286994e45SJed Brown .seealso: ISLocalToGlobalMappingCreate(), ISLocalToGlobalMappingApply(), ISLocalToGlobalMappingRestoreIndices() 107386994e45SJed Brown @*/ 10747087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingGetIndices(ISLocalToGlobalMapping ltog,const PetscInt **array) 107586994e45SJed Brown { 107686994e45SJed Brown PetscFunctionBegin; 107786994e45SJed Brown PetscValidHeaderSpecific(ltog,IS_LTOGM_CLASSID,1); 107886994e45SJed Brown PetscValidPointer(array,2); 1079*45b6f7e9SBarry Smith if (ltog->bs == 1) { 108086994e45SJed Brown *array = ltog->indices; 1081*45b6f7e9SBarry Smith } else { 1082*45b6f7e9SBarry Smith PetscInt *jj,k,i,j,n = ltog->n, bs = ltog->bs; 1083*45b6f7e9SBarry Smith const PetscInt *ii; 1084*45b6f7e9SBarry Smith PetscErrorCode ierr; 1085*45b6f7e9SBarry Smith 1086*45b6f7e9SBarry Smith ierr = PetscMalloc1(bs*n,&jj);CHKERRQ(ierr); 1087*45b6f7e9SBarry Smith *array = jj; 1088*45b6f7e9SBarry Smith k = 0; 1089*45b6f7e9SBarry Smith ii = ltog->indices; 1090*45b6f7e9SBarry Smith for (i=0; i<n; i++) 1091*45b6f7e9SBarry Smith for (j=0; j<bs; j++) 1092*45b6f7e9SBarry Smith jj[k++] = bs*ii[i] + j; 1093*45b6f7e9SBarry Smith } 109486994e45SJed Brown PetscFunctionReturn(0); 109586994e45SJed Brown } 109686994e45SJed Brown 109786994e45SJed Brown #undef __FUNCT__ 109886994e45SJed Brown #define __FUNCT__ "ISLocalToGlobalMappingRestoreIndices" 109986994e45SJed Brown /*@C 110086994e45SJed Brown ISLocalToGlobalMappingRestoreIndices - Restore indices obtained with ISLocalToGlobalMappingRestoreIndices() 110186994e45SJed Brown 110286994e45SJed Brown Not Collective 110386994e45SJed Brown 110486994e45SJed Brown Input Arguments: 110586994e45SJed Brown + ltog - local to global mapping 110686994e45SJed Brown - array - array of indices 110786994e45SJed Brown 110886994e45SJed Brown Level: advanced 110986994e45SJed Brown 111086994e45SJed Brown .seealso: ISLocalToGlobalMappingCreate(), ISLocalToGlobalMappingApply(), ISLocalToGlobalMappingGetIndices() 111186994e45SJed Brown @*/ 11127087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingRestoreIndices(ISLocalToGlobalMapping ltog,const PetscInt **array) 111386994e45SJed Brown { 111486994e45SJed Brown PetscFunctionBegin; 111586994e45SJed Brown PetscValidHeaderSpecific(ltog,IS_LTOGM_CLASSID,1); 111686994e45SJed Brown PetscValidPointer(array,2); 1117*45b6f7e9SBarry Smith if (ltog->bs == 1 && *array != ltog->indices) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_BADPTR,"Trying to return mismatched pointer"); 1118*45b6f7e9SBarry Smith 1119*45b6f7e9SBarry Smith if (ltog->bs > 1) { 1120*45b6f7e9SBarry Smith PetscErrorCode ierr; 1121*45b6f7e9SBarry Smith ierr = PetscFree(*(void**)array);CHKERRQ(ierr); 1122*45b6f7e9SBarry Smith } 1123*45b6f7e9SBarry Smith PetscFunctionReturn(0); 1124*45b6f7e9SBarry Smith } 1125*45b6f7e9SBarry Smith 1126*45b6f7e9SBarry Smith #undef __FUNCT__ 1127*45b6f7e9SBarry Smith #define __FUNCT__ "ISLocalToGlobalMappingGetBlockIndices" 1128*45b6f7e9SBarry Smith /*@C 1129*45b6f7e9SBarry Smith ISLocalToGlobalMappingGetBlockIndices - Get global indices for every local block 1130*45b6f7e9SBarry Smith 1131*45b6f7e9SBarry Smith Not Collective 1132*45b6f7e9SBarry Smith 1133*45b6f7e9SBarry Smith Input Arguments: 1134*45b6f7e9SBarry Smith . ltog - local to global mapping 1135*45b6f7e9SBarry Smith 1136*45b6f7e9SBarry Smith Output Arguments: 1137*45b6f7e9SBarry Smith . array - array of indices 1138*45b6f7e9SBarry Smith 1139*45b6f7e9SBarry Smith Level: advanced 1140*45b6f7e9SBarry Smith 1141*45b6f7e9SBarry Smith .seealso: ISLocalToGlobalMappingCreate(), ISLocalToGlobalMappingApply(), ISLocalToGlobalMappingRestoreBlockIndices() 1142*45b6f7e9SBarry Smith @*/ 1143*45b6f7e9SBarry Smith PetscErrorCode ISLocalToGlobalMappingGetBlockIndices(ISLocalToGlobalMapping ltog,const PetscInt **array) 1144*45b6f7e9SBarry Smith { 1145*45b6f7e9SBarry Smith PetscFunctionBegin; 1146*45b6f7e9SBarry Smith PetscValidHeaderSpecific(ltog,IS_LTOGM_CLASSID,1); 1147*45b6f7e9SBarry Smith PetscValidPointer(array,2); 1148*45b6f7e9SBarry Smith *array = ltog->indices; 1149*45b6f7e9SBarry Smith PetscFunctionReturn(0); 1150*45b6f7e9SBarry Smith } 1151*45b6f7e9SBarry Smith 1152*45b6f7e9SBarry Smith #undef __FUNCT__ 1153*45b6f7e9SBarry Smith #define __FUNCT__ "ISLocalToGlobalMappingRestoreBlockIndices" 1154*45b6f7e9SBarry Smith /*@C 1155*45b6f7e9SBarry Smith ISLocalToGlobalMappingRestoreBlockIndices - Restore indices obtained with ISLocalToGlobalMappingGetBlockIndices() 1156*45b6f7e9SBarry Smith 1157*45b6f7e9SBarry Smith Not Collective 1158*45b6f7e9SBarry Smith 1159*45b6f7e9SBarry Smith Input Arguments: 1160*45b6f7e9SBarry Smith + ltog - local to global mapping 1161*45b6f7e9SBarry Smith - array - array of indices 1162*45b6f7e9SBarry Smith 1163*45b6f7e9SBarry Smith Level: advanced 1164*45b6f7e9SBarry Smith 1165*45b6f7e9SBarry Smith .seealso: ISLocalToGlobalMappingCreate(), ISLocalToGlobalMappingApply(), ISLocalToGlobalMappingGetIndices() 1166*45b6f7e9SBarry Smith @*/ 1167*45b6f7e9SBarry Smith PetscErrorCode ISLocalToGlobalMappingRestoreBlockIndices(ISLocalToGlobalMapping ltog,const PetscInt **array) 1168*45b6f7e9SBarry Smith { 1169*45b6f7e9SBarry Smith PetscFunctionBegin; 1170*45b6f7e9SBarry Smith PetscValidHeaderSpecific(ltog,IS_LTOGM_CLASSID,1); 1171*45b6f7e9SBarry Smith PetscValidPointer(array,2); 117286994e45SJed Brown if (*array != ltog->indices) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_BADPTR,"Trying to return mismatched pointer"); 11730298fd71SBarry Smith *array = NULL; 117486994e45SJed Brown PetscFunctionReturn(0); 117586994e45SJed Brown } 1176f7efa3c7SJed Brown 1177f7efa3c7SJed Brown #undef __FUNCT__ 1178f7efa3c7SJed Brown #define __FUNCT__ "ISLocalToGlobalMappingConcatenate" 1179f7efa3c7SJed Brown /*@C 1180f7efa3c7SJed Brown ISLocalToGlobalMappingConcatenate - Create a new mapping that concatenates a list of mappings 1181f7efa3c7SJed Brown 1182f7efa3c7SJed Brown Not Collective 1183f7efa3c7SJed Brown 1184f7efa3c7SJed Brown Input Arguments: 1185f7efa3c7SJed Brown + comm - communicator for the new mapping, must contain the communicator of every mapping to concatenate 1186f7efa3c7SJed Brown . n - number of mappings to concatenate 1187f7efa3c7SJed Brown - ltogs - local to global mappings 1188f7efa3c7SJed Brown 1189f7efa3c7SJed Brown Output Arguments: 1190f7efa3c7SJed Brown . ltogcat - new mapping 1191f7efa3c7SJed Brown 1192f7efa3c7SJed Brown Level: advanced 1193f7efa3c7SJed Brown 1194f7efa3c7SJed Brown .seealso: ISLocalToGlobalMappingCreate() 1195f7efa3c7SJed Brown @*/ 1196f7efa3c7SJed Brown PetscErrorCode ISLocalToGlobalMappingConcatenate(MPI_Comm comm,PetscInt n,const ISLocalToGlobalMapping ltogs[],ISLocalToGlobalMapping *ltogcat) 1197f7efa3c7SJed Brown { 1198f7efa3c7SJed Brown PetscInt i,cnt,m,*idx; 1199f7efa3c7SJed Brown PetscErrorCode ierr; 1200f7efa3c7SJed Brown 1201f7efa3c7SJed Brown PetscFunctionBegin; 1202f7efa3c7SJed Brown if (n < 0) SETERRQ1(comm,PETSC_ERR_ARG_OUTOFRANGE,"Must have a non-negative number of mappings, given %D",n); 1203f7efa3c7SJed Brown if (n > 0) PetscValidPointer(ltogs,3); 1204f7efa3c7SJed Brown for (i=0; i<n; i++) PetscValidHeaderSpecific(ltogs[i],IS_LTOGM_CLASSID,3); 1205f7efa3c7SJed Brown PetscValidPointer(ltogcat,4); 1206f7efa3c7SJed Brown for (cnt=0,i=0; i<n; i++) { 1207f7efa3c7SJed Brown ierr = ISLocalToGlobalMappingGetSize(ltogs[i],&m);CHKERRQ(ierr); 1208f7efa3c7SJed Brown cnt += m; 1209f7efa3c7SJed Brown } 1210785e854fSJed Brown ierr = PetscMalloc1(cnt,&idx);CHKERRQ(ierr); 1211f7efa3c7SJed Brown for (cnt=0,i=0; i<n; i++) { 1212f7efa3c7SJed Brown const PetscInt *subidx; 1213f7efa3c7SJed Brown ierr = ISLocalToGlobalMappingGetSize(ltogs[i],&m);CHKERRQ(ierr); 1214f7efa3c7SJed Brown ierr = ISLocalToGlobalMappingGetIndices(ltogs[i],&subidx);CHKERRQ(ierr); 1215f7efa3c7SJed Brown ierr = PetscMemcpy(&idx[cnt],subidx,m*sizeof(PetscInt));CHKERRQ(ierr); 1216f7efa3c7SJed Brown ierr = ISLocalToGlobalMappingRestoreIndices(ltogs[i],&subidx);CHKERRQ(ierr); 1217f7efa3c7SJed Brown cnt += m; 1218f7efa3c7SJed Brown } 1219f0413b6fSBarry Smith ierr = ISLocalToGlobalMappingCreate(comm,1,cnt,idx,PETSC_OWN_POINTER,ltogcat);CHKERRQ(ierr); 1220f7efa3c7SJed Brown PetscFunctionReturn(0); 1221f7efa3c7SJed Brown } 122204a59952SBarry Smith 122304a59952SBarry Smith 1224