12362add9SBarry Smith 2b45d2f2cSJed Brown #include <petsc-private/isimpl.h> /*I "petscis.h" I*/ 30c312b8eSJed Brown #include <petscsf.h> 4665c2dedSJed Brown #include <petscviewer.h> 52362add9SBarry Smith 67087cfbeSBarry Smith PetscClassId IS_LTOGM_CLASSID; 78e58c17dSMatthew Knepley 804a59952SBarry Smith 94a2ae208SSatish Balay #undef __FUNCT__ 10743c9b42SStefano Zampini #define __FUNCT__ "ISG2LMapApply" 11186d4ecdSBarry Smith PetscErrorCode ISG2LMapApply(ISLocalToGlobalMapping mapping,PetscInt n,const PetscInt in[],PetscInt out[]) 12186d4ecdSBarry Smith { 13186d4ecdSBarry Smith PetscErrorCode ierr; 14743c9b42SStefano Zampini PetscInt i,start,end; 15186d4ecdSBarry Smith 16186d4ecdSBarry Smith PetscFunctionBegin; 17186d4ecdSBarry Smith if (!mapping->globals) { 18186d4ecdSBarry Smith ierr = ISGlobalToLocalMappingApply(mapping,IS_GTOLM_MASK,0,0,0,0);CHKERRQ(ierr); 19186d4ecdSBarry Smith } 20743c9b42SStefano Zampini start = mapping->globalstart; 21743c9b42SStefano Zampini end = mapping->globalend; 22186d4ecdSBarry Smith for (i=0; i<n; i++) { 23186d4ecdSBarry Smith if (in[i] < 0) out[i] = in[i]; 24186d4ecdSBarry Smith else if (in[i] < start) out[i] = -1; 25186d4ecdSBarry Smith else if (in[i] > end) out[i] = -1; 26743c9b42SStefano Zampini else out[i] = mapping->globals[in[i] - start]; 27186d4ecdSBarry Smith } 28186d4ecdSBarry Smith PetscFunctionReturn(0); 29186d4ecdSBarry Smith } 30186d4ecdSBarry Smith 31186d4ecdSBarry Smith 32186d4ecdSBarry Smith #undef __FUNCT__ 334a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingGetSize" 343b9aefa3SBarry Smith /*@C 353b9aefa3SBarry Smith ISLocalToGlobalMappingGetSize - Gets the local size of a local to global mapping. 363b9aefa3SBarry Smith 373b9aefa3SBarry Smith Not Collective 383b9aefa3SBarry Smith 393b9aefa3SBarry Smith Input Parameter: 403b9aefa3SBarry Smith . ltog - local to global mapping 413b9aefa3SBarry Smith 423b9aefa3SBarry Smith Output Parameter: 433b9aefa3SBarry Smith . n - the number of entries in the local mapping 443b9aefa3SBarry Smith 453b9aefa3SBarry Smith Level: advanced 463b9aefa3SBarry Smith 47273d9f13SBarry Smith Concepts: mapping^local to global 483b9aefa3SBarry Smith 493b9aefa3SBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreate() 503b9aefa3SBarry Smith @*/ 517087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingGetSize(ISLocalToGlobalMapping mapping,PetscInt *n) 523b9aefa3SBarry Smith { 533b9aefa3SBarry Smith PetscFunctionBegin; 540700a824SBarry Smith PetscValidHeaderSpecific(mapping,IS_LTOGM_CLASSID,1); 554482741eSBarry Smith PetscValidIntPointer(n,2); 563b9aefa3SBarry Smith *n = mapping->n; 573b9aefa3SBarry Smith PetscFunctionReturn(0); 583b9aefa3SBarry Smith } 593b9aefa3SBarry Smith 604a2ae208SSatish Balay #undef __FUNCT__ 614a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingView" 625a5d4f66SBarry Smith /*@C 635a5d4f66SBarry Smith ISLocalToGlobalMappingView - View a local to global mapping 645a5d4f66SBarry Smith 65b9cd556bSLois Curfman McInnes Not Collective 66b9cd556bSLois Curfman McInnes 675a5d4f66SBarry Smith Input Parameters: 683b9aefa3SBarry Smith + ltog - local to global mapping 693b9aefa3SBarry Smith - viewer - viewer 705a5d4f66SBarry Smith 71a997ad1aSLois Curfman McInnes Level: advanced 72a997ad1aSLois Curfman McInnes 73273d9f13SBarry Smith Concepts: mapping^local to global 745a5d4f66SBarry Smith 755a5d4f66SBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreate() 765a5d4f66SBarry Smith @*/ 777087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingView(ISLocalToGlobalMapping mapping,PetscViewer viewer) 785a5d4f66SBarry Smith { 7932dcc486SBarry Smith PetscInt i; 8032dcc486SBarry Smith PetscMPIInt rank; 81ace3abfcSBarry Smith PetscBool iascii; 826849ba73SBarry Smith PetscErrorCode ierr; 835a5d4f66SBarry Smith 845a5d4f66SBarry Smith PetscFunctionBegin; 850700a824SBarry Smith PetscValidHeaderSpecific(mapping,IS_LTOGM_CLASSID,1); 863050cee2SBarry Smith if (!viewer) { 87ce94432eSBarry Smith ierr = PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject)mapping),&viewer);CHKERRQ(ierr); 883050cee2SBarry Smith } 890700a824SBarry Smith PetscValidHeaderSpecific(viewer,PETSC_VIEWER_CLASSID,2); 905a5d4f66SBarry Smith 91ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mapping),&rank);CHKERRQ(ierr); 92251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 9332077d6dSBarry Smith if (iascii) { 947b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_TRUE);CHKERRQ(ierr); 955a5d4f66SBarry Smith for (i=0; i<mapping->n; i++) { 967904a332SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] %D %D\n",rank,i,mapping->indices[i]);CHKERRQ(ierr); 976831982aSBarry Smith } 98b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 997b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_FALSE);CHKERRQ(ierr); 1007b23a99aSBarry Smith } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Viewer type %s not supported for ISLocalToGlobalMapping",((PetscObject)viewer)->type_name); 1015a5d4f66SBarry Smith PetscFunctionReturn(0); 1025a5d4f66SBarry Smith } 1035a5d4f66SBarry Smith 1044a2ae208SSatish Balay #undef __FUNCT__ 1054a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingCreateIS" 1061f428162SBarry Smith /*@ 1072bdab257SBarry Smith ISLocalToGlobalMappingCreateIS - Creates a mapping between a local (0 to n) 1082bdab257SBarry Smith ordering and a global parallel ordering. 1092bdab257SBarry Smith 1100f5bd95cSBarry Smith Not collective 111b9cd556bSLois Curfman McInnes 112a997ad1aSLois Curfman McInnes Input Parameter: 1138c03b21aSDmitry Karpeev . is - index set containing the global numbers for each local number 1142bdab257SBarry Smith 115a997ad1aSLois Curfman McInnes Output Parameter: 1162bdab257SBarry Smith . mapping - new mapping data structure 1172bdab257SBarry Smith 118a997ad1aSLois Curfman McInnes Level: advanced 119a997ad1aSLois Curfman McInnes 120273d9f13SBarry Smith Concepts: mapping^local to global 1212bdab257SBarry Smith 1222bdab257SBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreate() 1232bdab257SBarry Smith @*/ 1247087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingCreateIS(IS is,ISLocalToGlobalMapping *mapping) 1252bdab257SBarry Smith { 1266849ba73SBarry Smith PetscErrorCode ierr; 1273bbf0e92SBarry Smith PetscInt n,bs; 1285d0c19d7SBarry Smith const PetscInt *indices; 1292bdab257SBarry Smith MPI_Comm comm; 1303bbf0e92SBarry Smith PetscBool isblock; 1313a40ed3dSBarry Smith 1323a40ed3dSBarry Smith PetscFunctionBegin; 1330700a824SBarry Smith PetscValidHeaderSpecific(is,IS_CLASSID,1); 1344482741eSBarry Smith PetscValidPointer(mapping,2); 1352bdab257SBarry Smith 1362bdab257SBarry Smith ierr = PetscObjectGetComm((PetscObject)is,&comm);CHKERRQ(ierr); 1373b9aefa3SBarry Smith ierr = ISGetLocalSize(is,&n);CHKERRQ(ierr); 1382bdab257SBarry Smith ierr = ISGetIndices(is,&indices);CHKERRQ(ierr); 1393bbf0e92SBarry Smith ierr = PetscObjectTypeCompare((PetscObject)is,ISBLOCK,&isblock);CHKERRQ(ierr); 1403bbf0e92SBarry Smith ierr = ISGetBlockSize(is,&bs);CHKERRQ(ierr); 1413bbf0e92SBarry Smith if (!isblock || bs == 1) { 142d5ad8652SBarry Smith ierr = ISLocalToGlobalMappingCreate(comm,n,indices,PETSC_COPY_VALUES,mapping);CHKERRQ(ierr); 1432bdab257SBarry Smith ierr = ISRestoreIndices(is,&indices);CHKERRQ(ierr); 1443bbf0e92SBarry Smith } else { 1453bbf0e92SBarry Smith ierr = ISLocalToGlobalMappingCreate(comm,n,indices,PETSC_OWN_POINTER,mapping);CHKERRQ(ierr); 1463bbf0e92SBarry Smith } 1473a40ed3dSBarry Smith PetscFunctionReturn(0); 1482bdab257SBarry Smith } 1495a5d4f66SBarry Smith 150a4d96a55SJed Brown #undef __FUNCT__ 151a4d96a55SJed Brown #define __FUNCT__ "ISLocalToGlobalMappingCreateSF" 152a4d96a55SJed Brown /*@C 153a4d96a55SJed Brown ISLocalToGlobalMappingCreateSF - Creates a mapping between a local (0 to n) 154a4d96a55SJed Brown ordering and a global parallel ordering. 155a4d96a55SJed Brown 156a4d96a55SJed Brown Collective 157a4d96a55SJed Brown 158a4d96a55SJed Brown Input Parameter: 159a4d96a55SJed Brown + sf - star forest mapping contiguous local indices to (rank, offset) 160a4d96a55SJed Brown - start - first global index on this process 161a4d96a55SJed Brown 162a4d96a55SJed Brown Output Parameter: 163a4d96a55SJed Brown . mapping - new mapping data structure 164a4d96a55SJed Brown 165a4d96a55SJed Brown Level: advanced 166a4d96a55SJed Brown 167a4d96a55SJed Brown Concepts: mapping^local to global 168a4d96a55SJed Brown 169a4d96a55SJed Brown .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreate(), ISLocalToGlobalMappingCreateIS() 170a4d96a55SJed Brown @*/ 171a4d96a55SJed Brown PetscErrorCode ISLocalToGlobalMappingCreateSF(PetscSF sf,PetscInt start,ISLocalToGlobalMapping *mapping) 172a4d96a55SJed Brown { 173a4d96a55SJed Brown PetscErrorCode ierr; 174a4d96a55SJed Brown PetscInt i,maxlocal,nroots,nleaves,*globals,*ltog; 175a4d96a55SJed Brown const PetscInt *ilocal; 176a4d96a55SJed Brown MPI_Comm comm; 177a4d96a55SJed Brown 178a4d96a55SJed Brown PetscFunctionBegin; 179a4d96a55SJed Brown PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 180a4d96a55SJed Brown PetscValidPointer(mapping,3); 181a4d96a55SJed Brown 182a4d96a55SJed Brown ierr = PetscObjectGetComm((PetscObject)sf,&comm);CHKERRQ(ierr); 1830298fd71SBarry Smith ierr = PetscSFGetGraph(sf,&nroots,&nleaves,&ilocal,NULL);CHKERRQ(ierr); 184f6e5521dSKarl Rupp if (ilocal) { 185f6e5521dSKarl Rupp for (i=0,maxlocal=0; i<nleaves; i++) maxlocal = PetscMax(maxlocal,ilocal[i]+1); 186f6e5521dSKarl Rupp } 187a4d96a55SJed Brown else maxlocal = nleaves; 188785e854fSJed Brown ierr = PetscMalloc1(nroots,&globals);CHKERRQ(ierr); 189785e854fSJed Brown ierr = PetscMalloc1(maxlocal,<og);CHKERRQ(ierr); 190a4d96a55SJed Brown for (i=0; i<nroots; i++) globals[i] = start + i; 191a4d96a55SJed Brown for (i=0; i<maxlocal; i++) ltog[i] = -1; 192a4d96a55SJed Brown ierr = PetscSFBcastBegin(sf,MPIU_INT,globals,ltog);CHKERRQ(ierr); 193a4d96a55SJed Brown ierr = PetscSFBcastEnd(sf,MPIU_INT,globals,ltog);CHKERRQ(ierr); 194a4d96a55SJed Brown ierr = ISLocalToGlobalMappingCreate(comm,maxlocal,ltog,PETSC_OWN_POINTER,mapping);CHKERRQ(ierr); 195a4d96a55SJed Brown ierr = PetscFree(globals);CHKERRQ(ierr); 196a4d96a55SJed Brown PetscFunctionReturn(0); 197a4d96a55SJed Brown } 198b46b645bSBarry Smith 1994a2ae208SSatish Balay #undef __FUNCT__ 2004a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingCreate" 201ba5bb76aSSatish Balay /*@ 20290f02eecSBarry Smith ISLocalToGlobalMappingCreate - Creates a mapping between a local (0 to n) 20390f02eecSBarry Smith ordering and a global parallel ordering. 2042362add9SBarry Smith 20589d82c54SBarry Smith Not Collective, but communicator may have more than one process 206b9cd556bSLois Curfman McInnes 2072362add9SBarry Smith Input Parameters: 20889d82c54SBarry Smith + comm - MPI communicator 20990f02eecSBarry Smith . n - the number of local elements 2109669e4d8SBarry Smith . indices - the global index for each local element, these do not need to be in increasing order (sorted) 211d5ad8652SBarry Smith - mode - see PetscCopyMode 2122362add9SBarry Smith 213a997ad1aSLois Curfman McInnes Output Parameter: 21490f02eecSBarry Smith . mapping - new mapping data structure 2152362add9SBarry Smith 216a997ad1aSLois Curfman McInnes Level: advanced 217a997ad1aSLois Curfman McInnes 218273d9f13SBarry Smith Concepts: mapping^local to global 2192362add9SBarry Smith 220d5ad8652SBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreateIS() 2212362add9SBarry Smith @*/ 2227087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingCreate(MPI_Comm cm,PetscInt n,const PetscInt indices[],PetscCopyMode mode,ISLocalToGlobalMapping *mapping) 2232362add9SBarry Smith { 2246849ba73SBarry Smith PetscErrorCode ierr; 22532dcc486SBarry Smith PetscInt *in; 226b46b645bSBarry Smith 227b46b645bSBarry Smith PetscFunctionBegin; 22873911063SBarry Smith if (n) PetscValidIntPointer(indices,3); 2294482741eSBarry Smith PetscValidPointer(mapping,4); 230b46b645bSBarry Smith 2310298fd71SBarry Smith *mapping = NULL; 232607a6623SBarry Smith ierr = ISInitializePackage();CHKERRQ(ierr); 2332362add9SBarry Smith 23467c2884eSBarry Smith ierr = PetscHeaderCreate(*mapping,_p_ISLocalToGlobalMapping,int,IS_LTOGM_CLASSID,"ISLocalToGlobalMapping","Local to global mapping","IS", 23552e6d16bSBarry Smith cm,ISLocalToGlobalMappingDestroy,ISLocalToGlobalMappingView);CHKERRQ(ierr); 236d4bb536fSBarry Smith (*mapping)->n = n; 237d4bb536fSBarry Smith /* 238d4bb536fSBarry Smith Do not create the global to local mapping. This is only created if 239d4bb536fSBarry Smith ISGlobalToLocalMapping() is called 240d4bb536fSBarry Smith */ 241d4bb536fSBarry Smith (*mapping)->globals = 0; 242d5ad8652SBarry Smith if (mode == PETSC_COPY_VALUES) { 243785e854fSJed Brown ierr = PetscMalloc1(n,&in);CHKERRQ(ierr); 244d5ad8652SBarry Smith ierr = PetscMemcpy(in,indices,n*sizeof(PetscInt));CHKERRQ(ierr); 2453bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)*mapping,n*sizeof(PetscInt));CHKERRQ(ierr); 246d5ad8652SBarry Smith (*mapping)->indices = in; 247f6e5521dSKarl Rupp } else if (mode == PETSC_OWN_POINTER) (*mapping)->indices = (PetscInt*)indices; 248f6e5521dSKarl Rupp else SETERRQ(cm,PETSC_ERR_SUP,"Cannot currently use PETSC_USE_POINTER"); 2493a40ed3dSBarry Smith PetscFunctionReturn(0); 2502362add9SBarry Smith } 2512362add9SBarry Smith 2524a2ae208SSatish Balay #undef __FUNCT__ 2534a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingBlock" 254bce096a4SSatish Balay /*@ 255323b833fSBarry Smith ISLocalToGlobalMappingBlock - Creates a blocked index version of an 256323b833fSBarry Smith ISLocalToGlobalMapping that is appropriate for MatSetLocalToGlobalMappingBlock() 257323b833fSBarry Smith and VecSetLocalToGlobalMappingBlock(). 258323b833fSBarry Smith 259323b833fSBarry Smith Not Collective, but communicator may have more than one process 260323b833fSBarry Smith 261323b833fSBarry Smith Input Parameters: 262323b833fSBarry Smith + inmap - original point-wise mapping 263323b833fSBarry Smith - bs - block size 264323b833fSBarry Smith 265323b833fSBarry Smith Output Parameter: 26669eb54c3SBarry Smith . outmap - block based mapping; the indices are relative to BLOCKS, not individual vector or matrix entries. 267323b833fSBarry Smith 268323b833fSBarry Smith Level: advanced 269323b833fSBarry Smith 270323b833fSBarry Smith Concepts: mapping^local to global 271323b833fSBarry Smith 272323b833fSBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreate(), ISLocalToGlobalMappingCreateIS() 273323b833fSBarry Smith @*/ 2747087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingBlock(ISLocalToGlobalMapping inmap,PetscInt bs,ISLocalToGlobalMapping *outmap) 275323b833fSBarry Smith { 2766849ba73SBarry Smith PetscErrorCode ierr; 27732dcc486SBarry Smith PetscInt *ii,i,n; 278323b833fSBarry Smith 279323b833fSBarry Smith PetscFunctionBegin; 2800700a824SBarry Smith PetscValidHeaderSpecific(inmap,IS_LTOGM_CLASSID,1); 281b2beed0aSJed Brown PetscValidPointer(outmap,3); 282323b833fSBarry Smith if (bs > 1) { 283323b833fSBarry Smith n = inmap->n/bs; 284e32f2f54SBarry Smith if (n*bs != inmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Pointwise mapping length is not divisible by block size"); 285785e854fSJed Brown ierr = PetscMalloc1(n,&ii);CHKERRQ(ierr); 286f6e5521dSKarl Rupp for (i=0; i<n; i++) ii[i] = inmap->indices[bs*i]/bs; 287ce94432eSBarry Smith ierr = ISLocalToGlobalMappingCreate(PetscObjectComm((PetscObject)inmap),n,ii,PETSC_OWN_POINTER,outmap);CHKERRQ(ierr); 288323b833fSBarry Smith } else { 289323b833fSBarry Smith ierr = PetscObjectReference((PetscObject)inmap);CHKERRQ(ierr); 290c3122656SLisandro Dalcin *outmap = inmap; 291323b833fSBarry Smith } 292323b833fSBarry Smith PetscFunctionReturn(0); 293323b833fSBarry Smith } 294323b833fSBarry Smith 2954a2ae208SSatish Balay #undef __FUNCT__ 2968ab951edSJed Brown #define __FUNCT__ "ISLocalToGlobalMappingUnBlock" 297b2beed0aSJed Brown /*@ 298b2beed0aSJed Brown ISLocalToGlobalMappingUnBlock - Creates a scalar index version of a blocked 299b2beed0aSJed Brown ISLocalToGlobalMapping 300b2beed0aSJed Brown 301b2beed0aSJed Brown Not Collective, but communicator may have more than one process 302b2beed0aSJed Brown 303b2beed0aSJed Brown Input Parameter: 304b2beed0aSJed Brown + inmap - block based mapping; the indices are relative to BLOCKS, not individual vector or matrix entries. 305b2beed0aSJed Brown - bs - block size 306b2beed0aSJed Brown 307b2beed0aSJed Brown Output Parameter: 308b2beed0aSJed Brown . outmap - pointwise mapping 309b2beed0aSJed Brown 310b2beed0aSJed Brown Level: advanced 311b2beed0aSJed Brown 312b2beed0aSJed Brown Concepts: mapping^local to global 313b2beed0aSJed Brown 314b2beed0aSJed Brown .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreate(), ISLocalToGlobalMappingBlock() 315b2beed0aSJed Brown @*/ 3167087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingUnBlock(ISLocalToGlobalMapping inmap,PetscInt bs,ISLocalToGlobalMapping *outmap) 317b2beed0aSJed Brown { 318b2beed0aSJed Brown PetscErrorCode ierr; 319b2beed0aSJed Brown PetscInt *ii,i,n; 320b2beed0aSJed Brown 321b2beed0aSJed Brown PetscFunctionBegin; 322b2beed0aSJed Brown PetscValidHeaderSpecific(inmap,IS_LTOGM_CLASSID,1); 323b2beed0aSJed Brown PetscValidPointer(outmap,2); 324b2beed0aSJed Brown if (bs > 1) { 325b2beed0aSJed Brown n = inmap->n*bs; 326785e854fSJed Brown ierr = PetscMalloc1(n,&ii);CHKERRQ(ierr); 327f6e5521dSKarl Rupp for (i=0; i<n; i++) ii[i] = inmap->indices[i/bs]*bs + (i%bs); 328ce94432eSBarry Smith ierr = ISLocalToGlobalMappingCreate(PetscObjectComm((PetscObject)inmap),n,ii,PETSC_OWN_POINTER,outmap);CHKERRQ(ierr); 329b2beed0aSJed Brown } else { 330b2beed0aSJed Brown ierr = PetscObjectReference((PetscObject)inmap);CHKERRQ(ierr); 331b2beed0aSJed Brown *outmap = inmap; 332b2beed0aSJed Brown } 333b2beed0aSJed Brown PetscFunctionReturn(0); 334b2beed0aSJed Brown } 335b2beed0aSJed Brown 336b2beed0aSJed Brown #undef __FUNCT__ 3374a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingDestroy" 33890f02eecSBarry Smith /*@ 33990f02eecSBarry Smith ISLocalToGlobalMappingDestroy - Destroys a mapping between a local (0 to n) 34090f02eecSBarry Smith ordering and a global parallel ordering. 34190f02eecSBarry Smith 3420f5bd95cSBarry Smith Note Collective 343b9cd556bSLois Curfman McInnes 34490f02eecSBarry Smith Input Parameters: 34590f02eecSBarry Smith . mapping - mapping data structure 34690f02eecSBarry Smith 347a997ad1aSLois Curfman McInnes Level: advanced 348a997ad1aSLois Curfman McInnes 3493acfe500SLois Curfman McInnes .seealso: ISLocalToGlobalMappingCreate() 35090f02eecSBarry Smith @*/ 3516bf464f9SBarry Smith PetscErrorCode ISLocalToGlobalMappingDestroy(ISLocalToGlobalMapping *mapping) 35290f02eecSBarry Smith { 353dfbe8321SBarry Smith PetscErrorCode ierr; 3545fd66863SKarl Rupp 3553a40ed3dSBarry Smith PetscFunctionBegin; 3566bf464f9SBarry Smith if (!*mapping) PetscFunctionReturn(0); 3576bf464f9SBarry Smith PetscValidHeaderSpecific((*mapping),IS_LTOGM_CLASSID,1); 358997056adSBarry Smith if (--((PetscObject)(*mapping))->refct > 0) {*mapping = 0;PetscFunctionReturn(0);} 3596bf464f9SBarry Smith ierr = PetscFree((*mapping)->indices);CHKERRQ(ierr); 3606bf464f9SBarry Smith ierr = PetscFree((*mapping)->globals);CHKERRQ(ierr); 361d38fa0fbSBarry Smith ierr = PetscHeaderDestroy(mapping);CHKERRQ(ierr); 362992144d0SBarry Smith *mapping = 0; 3633a40ed3dSBarry Smith PetscFunctionReturn(0); 36490f02eecSBarry Smith } 36590f02eecSBarry Smith 3664a2ae208SSatish Balay #undef __FUNCT__ 3674a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingApplyIS" 36890f02eecSBarry Smith /*@ 3693acfe500SLois Curfman McInnes ISLocalToGlobalMappingApplyIS - Creates from an IS in the local numbering 3703acfe500SLois Curfman McInnes a new index set using the global numbering defined in an ISLocalToGlobalMapping 3713acfe500SLois Curfman McInnes context. 37290f02eecSBarry Smith 373b9cd556bSLois Curfman McInnes Not collective 374b9cd556bSLois Curfman McInnes 37590f02eecSBarry Smith Input Parameters: 376b9cd556bSLois Curfman McInnes + mapping - mapping between local and global numbering 377b9cd556bSLois Curfman McInnes - is - index set in local numbering 37890f02eecSBarry Smith 37990f02eecSBarry Smith Output Parameters: 38090f02eecSBarry Smith . newis - index set in global numbering 38190f02eecSBarry Smith 382a997ad1aSLois Curfman McInnes Level: advanced 383a997ad1aSLois Curfman McInnes 384273d9f13SBarry Smith Concepts: mapping^local to global 3853acfe500SLois Curfman McInnes 38690f02eecSBarry Smith .seealso: ISLocalToGlobalMappingApply(), ISLocalToGlobalMappingCreate(), 387d4bb536fSBarry Smith ISLocalToGlobalMappingDestroy(), ISGlobalToLocalMappingApply() 38890f02eecSBarry Smith @*/ 3897087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingApplyIS(ISLocalToGlobalMapping mapping,IS is,IS *newis) 39090f02eecSBarry Smith { 3916849ba73SBarry Smith PetscErrorCode ierr; 3925d0c19d7SBarry Smith PetscInt n,i,*idxmap,*idxout,Nmax = mapping->n; 3935d0c19d7SBarry Smith const PetscInt *idxin; 3943a40ed3dSBarry Smith 3953a40ed3dSBarry Smith PetscFunctionBegin; 3960700a824SBarry Smith PetscValidHeaderSpecific(mapping,IS_LTOGM_CLASSID,1); 3970700a824SBarry Smith PetscValidHeaderSpecific(is,IS_CLASSID,2); 3984482741eSBarry Smith PetscValidPointer(newis,3); 39990f02eecSBarry Smith 4003b9aefa3SBarry Smith ierr = ISGetLocalSize(is,&n);CHKERRQ(ierr); 40190f02eecSBarry Smith ierr = ISGetIndices(is,&idxin);CHKERRQ(ierr); 40290f02eecSBarry Smith idxmap = mapping->indices; 40390f02eecSBarry Smith 404785e854fSJed Brown ierr = PetscMalloc1(n,&idxout);CHKERRQ(ierr); 40590f02eecSBarry Smith for (i=0; i<n; i++) { 4067904a332SBarry Smith if (idxin[i] >= Nmax) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local index %D too large %D (max) at %D",idxin[i],Nmax-1,i); 40790f02eecSBarry Smith idxout[i] = idxmap[idxin[i]]; 40890f02eecSBarry Smith } 4093b9aefa3SBarry Smith ierr = ISRestoreIndices(is,&idxin);CHKERRQ(ierr); 410*543f3098SMatthew G. Knepley ierr = ISCreateGeneral(PetscObjectComm((PetscObject)is),n,idxout,PETSC_OWN_POINTER,newis);CHKERRQ(ierr); 4113a40ed3dSBarry Smith PetscFunctionReturn(0); 41290f02eecSBarry Smith } 41390f02eecSBarry Smith 414afcb2eb5SJed Brown #undef __FUNCT__ 415afcb2eb5SJed Brown #define __FUNCT__ "ISLocalToGlobalMappingApply" 416b89cb25eSSatish Balay /*@ 4173acfe500SLois Curfman McInnes ISLocalToGlobalMappingApply - Takes a list of integers in a local numbering 4183acfe500SLois Curfman McInnes and converts them to the global numbering. 41990f02eecSBarry Smith 420b9cd556bSLois Curfman McInnes Not collective 421b9cd556bSLois Curfman McInnes 422bb25748dSBarry Smith Input Parameters: 423b9cd556bSLois Curfman McInnes + mapping - the local to global mapping context 424bb25748dSBarry Smith . N - number of integers 425b9cd556bSLois Curfman McInnes - in - input indices in local numbering 426bb25748dSBarry Smith 427bb25748dSBarry Smith Output Parameter: 428bb25748dSBarry Smith . out - indices in global numbering 429bb25748dSBarry Smith 430b9cd556bSLois Curfman McInnes Notes: 431b9cd556bSLois Curfman McInnes The in and out array parameters may be identical. 432d4bb536fSBarry Smith 433a997ad1aSLois Curfman McInnes Level: advanced 434a997ad1aSLois Curfman McInnes 435bb25748dSBarry Smith .seealso: ISLocalToGlobalMappingCreate(),ISLocalToGlobalMappingDestroy(), 4360752156aSBarry Smith ISLocalToGlobalMappingApplyIS(),AOCreateBasic(),AOApplicationToPetsc(), 437d4bb536fSBarry Smith AOPetscToApplication(), ISGlobalToLocalMappingApply() 438bb25748dSBarry Smith 439273d9f13SBarry Smith Concepts: mapping^local to global 440afcb2eb5SJed Brown @*/ 441afcb2eb5SJed Brown PetscErrorCode ISLocalToGlobalMappingApply(ISLocalToGlobalMapping mapping,PetscInt N,const PetscInt in[],PetscInt out[]) 442afcb2eb5SJed Brown { 443afcb2eb5SJed Brown PetscInt i,Nmax = mapping->n; 444afcb2eb5SJed Brown const PetscInt *idx = mapping->indices; 445d4bb536fSBarry Smith 446afcb2eb5SJed Brown PetscFunctionBegin; 447afcb2eb5SJed Brown for (i=0; i<N; i++) { 448afcb2eb5SJed Brown if (in[i] < 0) { 449afcb2eb5SJed Brown out[i] = in[i]; 450afcb2eb5SJed Brown continue; 451afcb2eb5SJed Brown } 452afcb2eb5SJed Brown if (in[i] >= Nmax) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local index %D too large %D (max) at %D",in[i],Nmax,i); 453afcb2eb5SJed Brown out[i] = idx[in[i]]; 454afcb2eb5SJed Brown } 455afcb2eb5SJed Brown PetscFunctionReturn(0); 456afcb2eb5SJed Brown } 457d4bb536fSBarry Smith 458d4bb536fSBarry Smith /* -----------------------------------------------------------------------------------------*/ 459d4bb536fSBarry Smith 4604a2ae208SSatish Balay #undef __FUNCT__ 4614a2ae208SSatish Balay #define __FUNCT__ "ISGlobalToLocalMappingSetUp_Private" 462d4bb536fSBarry Smith /* 463d4bb536fSBarry Smith Creates the global fields in the ISLocalToGlobalMapping structure 464d4bb536fSBarry Smith */ 4656849ba73SBarry Smith static PetscErrorCode ISGlobalToLocalMappingSetUp_Private(ISLocalToGlobalMapping mapping) 466d4bb536fSBarry Smith { 4676849ba73SBarry Smith PetscErrorCode ierr; 46832dcc486SBarry Smith PetscInt i,*idx = mapping->indices,n = mapping->n,end,start,*globals; 469d4bb536fSBarry Smith 4703a40ed3dSBarry Smith PetscFunctionBegin; 471d4bb536fSBarry Smith end = 0; 472ec268f7cSJed Brown start = PETSC_MAX_INT; 473d4bb536fSBarry Smith 474d4bb536fSBarry Smith for (i=0; i<n; i++) { 475d4bb536fSBarry Smith if (idx[i] < 0) continue; 476d4bb536fSBarry Smith if (idx[i] < start) start = idx[i]; 477d4bb536fSBarry Smith if (idx[i] > end) end = idx[i]; 478d4bb536fSBarry Smith } 479d4bb536fSBarry Smith if (start > end) {start = 0; end = -1;} 480d4bb536fSBarry Smith mapping->globalstart = start; 481d4bb536fSBarry Smith mapping->globalend = end; 482d4bb536fSBarry Smith 483785e854fSJed Brown ierr = PetscMalloc1((end-start+2),&globals);CHKERRQ(ierr); 484b0a32e0cSBarry Smith mapping->globals = globals; 485f6e5521dSKarl Rupp for (i=0; i<end-start+1; i++) globals[i] = -1; 486d4bb536fSBarry Smith for (i=0; i<n; i++) { 487d4bb536fSBarry Smith if (idx[i] < 0) continue; 488d4bb536fSBarry Smith globals[idx[i] - start] = i; 489d4bb536fSBarry Smith } 490d4bb536fSBarry Smith 4913bb1ff40SBarry Smith ierr = PetscLogObjectMemory((PetscObject)mapping,(end-start+1)*sizeof(PetscInt));CHKERRQ(ierr); 4923a40ed3dSBarry Smith PetscFunctionReturn(0); 493d4bb536fSBarry Smith } 494d4bb536fSBarry Smith 4954a2ae208SSatish Balay #undef __FUNCT__ 4964a2ae208SSatish Balay #define __FUNCT__ "ISGlobalToLocalMappingApply" 497d4bb536fSBarry Smith /*@ 498a997ad1aSLois Curfman McInnes ISGlobalToLocalMappingApply - Provides the local numbering for a list of integers 499a997ad1aSLois Curfman McInnes specified with a global numbering. 500d4bb536fSBarry Smith 501b9cd556bSLois Curfman McInnes Not collective 502b9cd556bSLois Curfman McInnes 503d4bb536fSBarry Smith Input Parameters: 504b9cd556bSLois Curfman McInnes + mapping - mapping between local and global numbering 505d4bb536fSBarry Smith . type - IS_GTOLM_MASK - replaces global indices with no local value with -1 506d4bb536fSBarry Smith IS_GTOLM_DROP - drops the indices with no local value from the output list 507d4bb536fSBarry Smith . n - number of global indices to map 508b9cd556bSLois Curfman McInnes - idx - global indices to map 509d4bb536fSBarry Smith 510d4bb536fSBarry Smith Output Parameters: 511b9cd556bSLois Curfman McInnes + nout - number of indices in output array (if type == IS_GTOLM_MASK then nout = n) 512b9cd556bSLois Curfman McInnes - idxout - local index of each global index, one must pass in an array long enough 513e182c471SBarry Smith to hold all the indices. You can call ISGlobalToLocalMappingApply() with 5140298fd71SBarry Smith idxout == NULL to determine the required length (returned in nout) 515e182c471SBarry Smith and then allocate the required space and call ISGlobalToLocalMappingApply() 516e182c471SBarry Smith a second time to set the values. 517d4bb536fSBarry Smith 518b9cd556bSLois Curfman McInnes Notes: 5190298fd71SBarry Smith Either nout or idxout may be NULL. idx and idxout may be identical. 520d4bb536fSBarry Smith 5210f5bd95cSBarry Smith This is not scalable in memory usage. Each processor requires O(Nglobal) size 5220f5bd95cSBarry Smith array to compute these. 5230f5bd95cSBarry Smith 524a997ad1aSLois Curfman McInnes Level: advanced 525a997ad1aSLois Curfman McInnes 52632fd6b96SBarry Smith Developer Note: The manual page states that idx and idxout may be identical but the calling 52732fd6b96SBarry Smith sequence declares idx as const so it cannot be the same as idxout. 52832fd6b96SBarry Smith 529273d9f13SBarry Smith Concepts: mapping^global to local 530d4bb536fSBarry Smith 531d4bb536fSBarry Smith .seealso: ISLocalToGlobalMappingApply(), ISLocalToGlobalMappingCreate(), 532d4bb536fSBarry Smith ISLocalToGlobalMappingDestroy() 533d4bb536fSBarry Smith @*/ 5347087cfbeSBarry Smith PetscErrorCode ISGlobalToLocalMappingApply(ISLocalToGlobalMapping mapping,ISGlobalToLocalMappingType type, 53532dcc486SBarry Smith PetscInt n,const PetscInt idx[],PetscInt *nout,PetscInt idxout[]) 536d4bb536fSBarry Smith { 53732dcc486SBarry Smith PetscInt i,*globals,nf = 0,tmp,start,end; 5386849ba73SBarry Smith PetscErrorCode ierr; 539d4bb536fSBarry Smith 5403a40ed3dSBarry Smith PetscFunctionBegin; 5410700a824SBarry Smith PetscValidHeaderSpecific(mapping,IS_LTOGM_CLASSID,1); 542d4bb536fSBarry Smith if (!mapping->globals) { 543d4bb536fSBarry Smith ierr = ISGlobalToLocalMappingSetUp_Private(mapping);CHKERRQ(ierr); 544d4bb536fSBarry Smith } 545d4bb536fSBarry Smith globals = mapping->globals; 546d4bb536fSBarry Smith start = mapping->globalstart; 547d4bb536fSBarry Smith end = mapping->globalend; 548d4bb536fSBarry Smith 549d4bb536fSBarry Smith if (type == IS_GTOLM_MASK) { 550d4bb536fSBarry Smith if (idxout) { 551d4bb536fSBarry Smith for (i=0; i<n; i++) { 552d4bb536fSBarry Smith if (idx[i] < 0) idxout[i] = idx[i]; 553d4bb536fSBarry Smith else if (idx[i] < start) idxout[i] = -1; 554d4bb536fSBarry Smith else if (idx[i] > end) idxout[i] = -1; 555d4bb536fSBarry Smith else idxout[i] = globals[idx[i] - start]; 556d4bb536fSBarry Smith } 557d4bb536fSBarry Smith } 558d4bb536fSBarry Smith if (nout) *nout = n; 559d4bb536fSBarry Smith } else { 560d4bb536fSBarry Smith if (idxout) { 561d4bb536fSBarry Smith for (i=0; i<n; i++) { 562d4bb536fSBarry Smith if (idx[i] < 0) continue; 563d4bb536fSBarry Smith if (idx[i] < start) continue; 564d4bb536fSBarry Smith if (idx[i] > end) continue; 565d4bb536fSBarry Smith tmp = globals[idx[i] - start]; 566d4bb536fSBarry Smith if (tmp < 0) continue; 567d4bb536fSBarry Smith idxout[nf++] = tmp; 568d4bb536fSBarry Smith } 569d4bb536fSBarry Smith } else { 570d4bb536fSBarry Smith for (i=0; i<n; i++) { 571d4bb536fSBarry Smith if (idx[i] < 0) continue; 572d4bb536fSBarry Smith if (idx[i] < start) continue; 573d4bb536fSBarry Smith if (idx[i] > end) continue; 574d4bb536fSBarry Smith tmp = globals[idx[i] - start]; 575d4bb536fSBarry Smith if (tmp < 0) continue; 576d4bb536fSBarry Smith nf++; 577d4bb536fSBarry Smith } 578d4bb536fSBarry Smith } 579d4bb536fSBarry Smith if (nout) *nout = nf; 580d4bb536fSBarry Smith } 5813a40ed3dSBarry Smith PetscFunctionReturn(0); 582d4bb536fSBarry Smith } 58390f02eecSBarry Smith 5844a2ae208SSatish Balay #undef __FUNCT__ 5854a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingGetInfo" 58689d82c54SBarry Smith /*@C 58789d82c54SBarry Smith ISLocalToGlobalMappingGetInfo - Gets the neighbor information for each processor and 58889d82c54SBarry Smith each index shared by more than one processor 58989d82c54SBarry Smith 59089d82c54SBarry Smith Collective on ISLocalToGlobalMapping 59189d82c54SBarry Smith 59289d82c54SBarry Smith Input Parameters: 59389d82c54SBarry Smith . mapping - the mapping from local to global indexing 59489d82c54SBarry Smith 59589d82c54SBarry Smith Output Parameter: 59689d82c54SBarry Smith + nproc - number of processors that are connected to this one 59789d82c54SBarry Smith . proc - neighboring processors 59807b52d57SBarry Smith . numproc - number of indices for each subdomain (processor) 5993463a7baSJed Brown - indices - indices of nodes (in local numbering) shared with neighbors (sorted by global numbering) 60089d82c54SBarry Smith 60189d82c54SBarry Smith Level: advanced 60289d82c54SBarry Smith 603273d9f13SBarry Smith Concepts: mapping^local to global 60489d82c54SBarry Smith 6052cfcea29SBarry Smith Fortran Usage: 6062cfcea29SBarry Smith $ ISLocalToGlobalMpngGetInfoSize(ISLocalToGlobalMapping,PetscInt nproc,PetscInt numprocmax,ierr) followed by 6072cfcea29SBarry Smith $ ISLocalToGlobalMappingGetInfo(ISLocalToGlobalMapping,PetscInt nproc, PetscInt procs[nproc],PetscInt numprocs[nproc], 6082cfcea29SBarry Smith PetscInt indices[nproc][numprocmax],ierr) 6092cfcea29SBarry Smith There is no ISLocalToGlobalMappingRestoreInfo() in Fortran. You must make sure that procs[], numprocs[] and 6102cfcea29SBarry Smith indices[][] are large enough arrays, either by allocating them dynamically or defining static ones large enough. 6112cfcea29SBarry Smith 6122cfcea29SBarry Smith 61307b52d57SBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreateIS(), ISLocalToGlobalMappingCreate(), 61407b52d57SBarry Smith ISLocalToGlobalMappingRestoreInfo() 61589d82c54SBarry Smith @*/ 6167087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingGetInfo(ISLocalToGlobalMapping mapping,PetscInt *nproc,PetscInt *procs[],PetscInt *numprocs[],PetscInt **indices[]) 61789d82c54SBarry Smith { 6186849ba73SBarry Smith PetscErrorCode ierr; 61997f1f81fSBarry Smith PetscMPIInt size,rank,tag1,tag2,tag3,*len,*source,imdex; 62032dcc486SBarry Smith PetscInt i,n = mapping->n,Ng,ng,max = 0,*lindices = mapping->indices; 62132dcc486SBarry Smith PetscInt *nprocs,*owner,nsends,*sends,j,*starts,nmax,nrecvs,*recvs,proc; 62297f1f81fSBarry Smith PetscInt cnt,scale,*ownedsenders,*nownedsenders,rstart,nowned; 62332dcc486SBarry Smith PetscInt node,nownedm,nt,*sends2,nsends2,*starts2,*lens2,*dest,nrecvs2,*starts3,*recvs2,k,*bprocs,*tmp; 62432dcc486SBarry Smith PetscInt first_procs,first_numprocs,*first_indices; 62589d82c54SBarry Smith MPI_Request *recv_waits,*send_waits; 62630dcb7c9SBarry Smith MPI_Status recv_status,*send_status,*recv_statuses; 627ce94432eSBarry Smith MPI_Comm comm; 628ace3abfcSBarry Smith PetscBool debug = PETSC_FALSE; 62989d82c54SBarry Smith 63089d82c54SBarry Smith PetscFunctionBegin; 6310700a824SBarry Smith PetscValidHeaderSpecific(mapping,IS_LTOGM_CLASSID,1); 632ce94432eSBarry Smith ierr = PetscObjectGetComm((PetscObject)mapping,&comm);CHKERRQ(ierr); 63324cf384cSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 63424cf384cSBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 63524cf384cSBarry Smith if (size == 1) { 63624cf384cSBarry Smith *nproc = 0; 6370298fd71SBarry Smith *procs = NULL; 63832dcc486SBarry Smith ierr = PetscMalloc(sizeof(PetscInt),numprocs);CHKERRQ(ierr); 6391e2105dcSBarry Smith (*numprocs)[0] = 0; 64032dcc486SBarry Smith ierr = PetscMalloc(sizeof(PetscInt*),indices);CHKERRQ(ierr); 6410298fd71SBarry Smith (*indices)[0] = NULL; 64224cf384cSBarry Smith PetscFunctionReturn(0); 64324cf384cSBarry Smith } 64424cf384cSBarry Smith 6450298fd71SBarry Smith ierr = PetscOptionsGetBool(NULL,"-islocaltoglobalmappinggetinfo_debug",&debug,NULL);CHKERRQ(ierr); 64607b52d57SBarry Smith 6473677ff5aSBarry Smith /* 6483677ff5aSBarry Smith Notes on ISLocalToGlobalMappingGetInfo 6493677ff5aSBarry Smith 6503677ff5aSBarry Smith globally owned node - the nodes that have been assigned to this processor in global 6513677ff5aSBarry Smith numbering, just for this routine. 6523677ff5aSBarry Smith 6533677ff5aSBarry Smith nontrivial globally owned node - node assigned to this processor that is on a subdomain 6543677ff5aSBarry Smith boundary (i.e. is has more than one local owner) 6553677ff5aSBarry Smith 6563677ff5aSBarry Smith locally owned node - node that exists on this processors subdomain 6573677ff5aSBarry Smith 6583677ff5aSBarry Smith nontrivial locally owned node - node that is not in the interior (i.e. has more than one 6593677ff5aSBarry Smith local subdomain 6603677ff5aSBarry Smith */ 66124cf384cSBarry Smith ierr = PetscObjectGetNewTag((PetscObject)mapping,&tag1);CHKERRQ(ierr); 66224cf384cSBarry Smith ierr = PetscObjectGetNewTag((PetscObject)mapping,&tag2);CHKERRQ(ierr); 66324cf384cSBarry Smith ierr = PetscObjectGetNewTag((PetscObject)mapping,&tag3);CHKERRQ(ierr); 66489d82c54SBarry Smith 66589d82c54SBarry Smith for (i=0; i<n; i++) { 66689d82c54SBarry Smith if (lindices[i] > max) max = lindices[i]; 66789d82c54SBarry Smith } 66832dcc486SBarry Smith ierr = MPI_Allreduce(&max,&Ng,1,MPIU_INT,MPI_MAX,comm);CHKERRQ(ierr); 66978058e43SBarry Smith Ng++; 67089d82c54SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 67189d82c54SBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 672bc8ff85bSBarry Smith scale = Ng/size + 1; 673a2e34c3dSBarry Smith ng = scale; if (rank == size-1) ng = Ng - scale*(size-1); ng = PetscMax(1,ng); 674caba0dd0SBarry Smith rstart = scale*rank; 67589d82c54SBarry Smith 67689d82c54SBarry Smith /* determine ownership ranges of global indices */ 677785e854fSJed Brown ierr = PetscMalloc1(2*size,&nprocs);CHKERRQ(ierr); 67832dcc486SBarry Smith ierr = PetscMemzero(nprocs,2*size*sizeof(PetscInt));CHKERRQ(ierr); 67989d82c54SBarry Smith 68089d82c54SBarry Smith /* determine owners of each local node */ 681785e854fSJed Brown ierr = PetscMalloc1(n,&owner);CHKERRQ(ierr); 68289d82c54SBarry Smith for (i=0; i<n; i++) { 6833677ff5aSBarry Smith proc = lindices[i]/scale; /* processor that globally owns this index */ 68427c402fcSBarry Smith nprocs[2*proc+1] = 1; /* processor globally owns at least one of ours */ 6853677ff5aSBarry Smith owner[i] = proc; 68627c402fcSBarry Smith nprocs[2*proc]++; /* count of how many that processor globally owns of ours */ 68789d82c54SBarry Smith } 68827c402fcSBarry Smith nsends = 0; for (i=0; i<size; i++) nsends += nprocs[2*i+1]; 6897904a332SBarry Smith ierr = PetscInfo1(mapping,"Number of global owners for my local data %D\n",nsends);CHKERRQ(ierr); 69089d82c54SBarry Smith 69189d82c54SBarry Smith /* inform other processors of number of messages and max length*/ 69227c402fcSBarry Smith ierr = PetscMaxSum(comm,nprocs,&nmax,&nrecvs);CHKERRQ(ierr); 6937904a332SBarry Smith ierr = PetscInfo1(mapping,"Number of local owners for my global data %D\n",nrecvs);CHKERRQ(ierr); 69489d82c54SBarry Smith 69589d82c54SBarry Smith /* post receives for owned rows */ 696785e854fSJed Brown ierr = PetscMalloc1((2*nrecvs+1)*(nmax+1),&recvs);CHKERRQ(ierr); 697785e854fSJed Brown ierr = PetscMalloc1((nrecvs+1),&recv_waits);CHKERRQ(ierr); 69889d82c54SBarry Smith for (i=0; i<nrecvs; i++) { 69932dcc486SBarry Smith ierr = MPI_Irecv(recvs+2*nmax*i,2*nmax,MPIU_INT,MPI_ANY_SOURCE,tag1,comm,recv_waits+i);CHKERRQ(ierr); 70089d82c54SBarry Smith } 70189d82c54SBarry Smith 70289d82c54SBarry Smith /* pack messages containing lists of local nodes to owners */ 703785e854fSJed Brown ierr = PetscMalloc1((2*n+1),&sends);CHKERRQ(ierr); 704785e854fSJed Brown ierr = PetscMalloc1((size+1),&starts);CHKERRQ(ierr); 70589d82c54SBarry Smith starts[0] = 0; 706f6e5521dSKarl Rupp for (i=1; i<size; i++) starts[i] = starts[i-1] + 2*nprocs[2*i-2]; 70789d82c54SBarry Smith for (i=0; i<n; i++) { 70889d82c54SBarry Smith sends[starts[owner[i]]++] = lindices[i]; 70930dcb7c9SBarry Smith sends[starts[owner[i]]++] = i; 71089d82c54SBarry Smith } 71189d82c54SBarry Smith ierr = PetscFree(owner);CHKERRQ(ierr); 71289d82c54SBarry Smith starts[0] = 0; 713f6e5521dSKarl Rupp for (i=1; i<size; i++) starts[i] = starts[i-1] + 2*nprocs[2*i-2]; 71489d82c54SBarry Smith 71589d82c54SBarry Smith /* send the messages */ 716785e854fSJed Brown ierr = PetscMalloc1((nsends+1),&send_waits);CHKERRQ(ierr); 717785e854fSJed Brown ierr = PetscMalloc1((nsends+1),&dest);CHKERRQ(ierr); 71889d82c54SBarry Smith cnt = 0; 71989d82c54SBarry Smith for (i=0; i<size; i++) { 72027c402fcSBarry Smith if (nprocs[2*i]) { 72132dcc486SBarry Smith ierr = MPI_Isend(sends+starts[i],2*nprocs[2*i],MPIU_INT,i,tag1,comm,send_waits+cnt);CHKERRQ(ierr); 72230dcb7c9SBarry Smith dest[cnt] = i; 72389d82c54SBarry Smith cnt++; 72489d82c54SBarry Smith } 72589d82c54SBarry Smith } 72689d82c54SBarry Smith ierr = PetscFree(starts);CHKERRQ(ierr); 72789d82c54SBarry Smith 72889d82c54SBarry Smith /* wait on receives */ 729785e854fSJed Brown ierr = PetscMalloc1((nrecvs+1),&source);CHKERRQ(ierr); 730785e854fSJed Brown ierr = PetscMalloc1((nrecvs+1),&len);CHKERRQ(ierr); 73189d82c54SBarry Smith cnt = nrecvs; 732785e854fSJed Brown ierr = PetscMalloc1((ng+1),&nownedsenders);CHKERRQ(ierr); 73332dcc486SBarry Smith ierr = PetscMemzero(nownedsenders,ng*sizeof(PetscInt));CHKERRQ(ierr); 73489d82c54SBarry Smith while (cnt) { 73589d82c54SBarry Smith ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr); 73689d82c54SBarry Smith /* unpack receives into our local space */ 73732dcc486SBarry Smith ierr = MPI_Get_count(&recv_status,MPIU_INT,&len[imdex]);CHKERRQ(ierr); 73889d82c54SBarry Smith source[imdex] = recv_status.MPI_SOURCE; 73930dcb7c9SBarry Smith len[imdex] = len[imdex]/2; 740caba0dd0SBarry Smith /* count how many local owners for each of my global owned indices */ 74130dcb7c9SBarry Smith for (i=0; i<len[imdex]; i++) nownedsenders[recvs[2*imdex*nmax+2*i]-rstart]++; 74289d82c54SBarry Smith cnt--; 74389d82c54SBarry Smith } 74489d82c54SBarry Smith ierr = PetscFree(recv_waits);CHKERRQ(ierr); 74589d82c54SBarry Smith 74630dcb7c9SBarry Smith /* count how many globally owned indices are on an edge multiplied by how many processors own them. */ 747bc8ff85bSBarry Smith nowned = 0; 748bc8ff85bSBarry Smith nownedm = 0; 749bc8ff85bSBarry Smith for (i=0; i<ng; i++) { 750bc8ff85bSBarry Smith if (nownedsenders[i] > 1) {nownedm += nownedsenders[i]; nowned++;} 751bc8ff85bSBarry Smith } 752bc8ff85bSBarry Smith 753bc8ff85bSBarry Smith /* create single array to contain rank of all local owners of each globally owned index */ 754785e854fSJed Brown ierr = PetscMalloc1((nownedm+1),&ownedsenders);CHKERRQ(ierr); 755785e854fSJed Brown ierr = PetscMalloc1((ng+1),&starts);CHKERRQ(ierr); 756bc8ff85bSBarry Smith starts[0] = 0; 757bc8ff85bSBarry Smith for (i=1; i<ng; i++) { 758bc8ff85bSBarry Smith if (nownedsenders[i-1] > 1) starts[i] = starts[i-1] + nownedsenders[i-1]; 759bc8ff85bSBarry Smith else starts[i] = starts[i-1]; 760bc8ff85bSBarry Smith } 761bc8ff85bSBarry Smith 76230dcb7c9SBarry Smith /* for each nontrival globally owned node list all arriving processors */ 763bc8ff85bSBarry Smith for (i=0; i<nrecvs; i++) { 764bc8ff85bSBarry Smith for (j=0; j<len[i]; j++) { 76530dcb7c9SBarry Smith node = recvs[2*i*nmax+2*j]-rstart; 766f6e5521dSKarl Rupp if (nownedsenders[node] > 1) ownedsenders[starts[node]++] = source[i]; 767bc8ff85bSBarry Smith } 768bc8ff85bSBarry Smith } 769bc8ff85bSBarry Smith 77007b52d57SBarry Smith if (debug) { /* ----------------------------------- */ 77130dcb7c9SBarry Smith starts[0] = 0; 77230dcb7c9SBarry Smith for (i=1; i<ng; i++) { 77330dcb7c9SBarry Smith if (nownedsenders[i-1] > 1) starts[i] = starts[i-1] + nownedsenders[i-1]; 77430dcb7c9SBarry Smith else starts[i] = starts[i-1]; 77530dcb7c9SBarry Smith } 77630dcb7c9SBarry Smith for (i=0; i<ng; i++) { 77730dcb7c9SBarry Smith if (nownedsenders[i] > 1) { 7787904a332SBarry Smith ierr = PetscSynchronizedPrintf(comm,"[%d] global node %D local owner processors: ",rank,i+rstart);CHKERRQ(ierr); 77930dcb7c9SBarry Smith for (j=0; j<nownedsenders[i]; j++) { 7807904a332SBarry Smith ierr = PetscSynchronizedPrintf(comm,"%D ",ownedsenders[starts[i]+j]);CHKERRQ(ierr); 78130dcb7c9SBarry Smith } 78230dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"\n");CHKERRQ(ierr); 78330dcb7c9SBarry Smith } 78430dcb7c9SBarry Smith } 7850ec8b6e3SBarry Smith ierr = PetscSynchronizedFlush(comm,PETSC_STDOUT);CHKERRQ(ierr); 78607b52d57SBarry Smith } /* ----------------------------------- */ 78730dcb7c9SBarry Smith 7883677ff5aSBarry Smith /* wait on original sends */ 7893a96401aSBarry Smith if (nsends) { 790785e854fSJed Brown ierr = PetscMalloc1(nsends,&send_status);CHKERRQ(ierr); 7913a96401aSBarry Smith ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr); 7923a96401aSBarry Smith ierr = PetscFree(send_status);CHKERRQ(ierr); 7933a96401aSBarry Smith } 79489d82c54SBarry Smith ierr = PetscFree(send_waits);CHKERRQ(ierr); 7953a96401aSBarry Smith ierr = PetscFree(sends);CHKERRQ(ierr); 7963677ff5aSBarry Smith ierr = PetscFree(nprocs);CHKERRQ(ierr); 7973677ff5aSBarry Smith 7983677ff5aSBarry Smith /* pack messages to send back to local owners */ 79930dcb7c9SBarry Smith starts[0] = 0; 80030dcb7c9SBarry Smith for (i=1; i<ng; i++) { 80130dcb7c9SBarry Smith if (nownedsenders[i-1] > 1) starts[i] = starts[i-1] + nownedsenders[i-1]; 80230dcb7c9SBarry Smith else starts[i] = starts[i-1]; 80330dcb7c9SBarry Smith } 80430dcb7c9SBarry Smith nsends2 = nrecvs; 805785e854fSJed Brown ierr = PetscMalloc1((nsends2+1),&nprocs);CHKERRQ(ierr); /* length of each message */ 80630dcb7c9SBarry Smith for (i=0; i<nrecvs; i++) { 80730dcb7c9SBarry Smith nprocs[i] = 1; 80830dcb7c9SBarry Smith for (j=0; j<len[i]; j++) { 80930dcb7c9SBarry Smith node = recvs[2*i*nmax+2*j]-rstart; 810f6e5521dSKarl Rupp if (nownedsenders[node] > 1) nprocs[i] += 2 + nownedsenders[node]; 81130dcb7c9SBarry Smith } 81230dcb7c9SBarry Smith } 813f6e5521dSKarl Rupp nt = 0; 814f6e5521dSKarl Rupp for (i=0; i<nsends2; i++) nt += nprocs[i]; 815f6e5521dSKarl Rupp 816785e854fSJed Brown ierr = PetscMalloc1((nt+1),&sends2);CHKERRQ(ierr); 817785e854fSJed Brown ierr = PetscMalloc1((nsends2+1),&starts2);CHKERRQ(ierr); 818f6e5521dSKarl Rupp 819f6e5521dSKarl Rupp starts2[0] = 0; 820f6e5521dSKarl Rupp for (i=1; i<nsends2; i++) starts2[i] = starts2[i-1] + nprocs[i-1]; 82130dcb7c9SBarry Smith /* 82230dcb7c9SBarry Smith Each message is 1 + nprocs[i] long, and consists of 82330dcb7c9SBarry Smith (0) the number of nodes being sent back 82430dcb7c9SBarry Smith (1) the local node number, 82530dcb7c9SBarry Smith (2) the number of processors sharing it, 82630dcb7c9SBarry Smith (3) the processors sharing it 82730dcb7c9SBarry Smith */ 82830dcb7c9SBarry Smith for (i=0; i<nsends2; i++) { 82930dcb7c9SBarry Smith cnt = 1; 83030dcb7c9SBarry Smith sends2[starts2[i]] = 0; 83130dcb7c9SBarry Smith for (j=0; j<len[i]; j++) { 83230dcb7c9SBarry Smith node = recvs[2*i*nmax+2*j]-rstart; 83330dcb7c9SBarry Smith if (nownedsenders[node] > 1) { 83430dcb7c9SBarry Smith sends2[starts2[i]]++; 83530dcb7c9SBarry Smith sends2[starts2[i]+cnt++] = recvs[2*i*nmax+2*j+1]; 83630dcb7c9SBarry Smith sends2[starts2[i]+cnt++] = nownedsenders[node]; 83732dcc486SBarry Smith ierr = PetscMemcpy(&sends2[starts2[i]+cnt],&ownedsenders[starts[node]],nownedsenders[node]*sizeof(PetscInt));CHKERRQ(ierr); 83830dcb7c9SBarry Smith cnt += nownedsenders[node]; 83930dcb7c9SBarry Smith } 84030dcb7c9SBarry Smith } 84130dcb7c9SBarry Smith } 84230dcb7c9SBarry Smith 84330dcb7c9SBarry Smith /* receive the message lengths */ 84430dcb7c9SBarry Smith nrecvs2 = nsends; 845785e854fSJed Brown ierr = PetscMalloc1((nrecvs2+1),&lens2);CHKERRQ(ierr); 846785e854fSJed Brown ierr = PetscMalloc1((nrecvs2+1),&starts3);CHKERRQ(ierr); 847785e854fSJed Brown ierr = PetscMalloc1((nrecvs2+1),&recv_waits);CHKERRQ(ierr); 84830dcb7c9SBarry Smith for (i=0; i<nrecvs2; i++) { 849d44834fbSBarry Smith ierr = MPI_Irecv(&lens2[i],1,MPIU_INT,dest[i],tag2,comm,recv_waits+i);CHKERRQ(ierr); 85030dcb7c9SBarry Smith } 851d44834fbSBarry Smith 8528a8e0b3aSBarry Smith /* send the message lengths */ 8538a8e0b3aSBarry Smith for (i=0; i<nsends2; i++) { 8548a8e0b3aSBarry Smith ierr = MPI_Send(&nprocs[i],1,MPIU_INT,source[i],tag2,comm);CHKERRQ(ierr); 8558a8e0b3aSBarry Smith } 8568a8e0b3aSBarry Smith 857d44834fbSBarry Smith /* wait on receives of lens */ 8580c468ba9SBarry Smith if (nrecvs2) { 859785e854fSJed Brown ierr = PetscMalloc1(nrecvs2,&recv_statuses);CHKERRQ(ierr); 860d44834fbSBarry Smith ierr = MPI_Waitall(nrecvs2,recv_waits,recv_statuses);CHKERRQ(ierr); 861d44834fbSBarry Smith ierr = PetscFree(recv_statuses);CHKERRQ(ierr); 8620c468ba9SBarry Smith } 863a2ea699eSBarry Smith ierr = PetscFree(recv_waits);CHKERRQ(ierr); 864d44834fbSBarry Smith 86530dcb7c9SBarry Smith starts3[0] = 0; 866d44834fbSBarry Smith nt = 0; 86730dcb7c9SBarry Smith for (i=0; i<nrecvs2-1; i++) { 86830dcb7c9SBarry Smith starts3[i+1] = starts3[i] + lens2[i]; 869d44834fbSBarry Smith nt += lens2[i]; 87030dcb7c9SBarry Smith } 87176466f69SStefano Zampini if (nrecvs2) nt += lens2[nrecvs2-1]; 872d44834fbSBarry Smith 873785e854fSJed Brown ierr = PetscMalloc1((nt+1),&recvs2);CHKERRQ(ierr); 874785e854fSJed Brown ierr = PetscMalloc1((nrecvs2+1),&recv_waits);CHKERRQ(ierr); 87552b72c4aSBarry Smith for (i=0; i<nrecvs2; i++) { 87632dcc486SBarry Smith ierr = MPI_Irecv(recvs2+starts3[i],lens2[i],MPIU_INT,dest[i],tag3,comm,recv_waits+i);CHKERRQ(ierr); 87730dcb7c9SBarry Smith } 87830dcb7c9SBarry Smith 87930dcb7c9SBarry Smith /* send the messages */ 880785e854fSJed Brown ierr = PetscMalloc1((nsends2+1),&send_waits);CHKERRQ(ierr); 88130dcb7c9SBarry Smith for (i=0; i<nsends2; i++) { 88232dcc486SBarry Smith ierr = MPI_Isend(sends2+starts2[i],nprocs[i],MPIU_INT,source[i],tag3,comm,send_waits+i);CHKERRQ(ierr); 88330dcb7c9SBarry Smith } 88430dcb7c9SBarry Smith 88530dcb7c9SBarry Smith /* wait on receives */ 8860c468ba9SBarry Smith if (nrecvs2) { 887785e854fSJed Brown ierr = PetscMalloc1(nrecvs2,&recv_statuses);CHKERRQ(ierr); 88830dcb7c9SBarry Smith ierr = MPI_Waitall(nrecvs2,recv_waits,recv_statuses);CHKERRQ(ierr); 88930dcb7c9SBarry Smith ierr = PetscFree(recv_statuses);CHKERRQ(ierr); 8900c468ba9SBarry Smith } 89130dcb7c9SBarry Smith ierr = PetscFree(recv_waits);CHKERRQ(ierr); 89230dcb7c9SBarry Smith ierr = PetscFree(nprocs);CHKERRQ(ierr); 89330dcb7c9SBarry Smith 89407b52d57SBarry Smith if (debug) { /* ----------------------------------- */ 89530dcb7c9SBarry Smith cnt = 0; 89630dcb7c9SBarry Smith for (i=0; i<nrecvs2; i++) { 89730dcb7c9SBarry Smith nt = recvs2[cnt++]; 89830dcb7c9SBarry Smith for (j=0; j<nt; j++) { 8997904a332SBarry Smith ierr = PetscSynchronizedPrintf(comm,"[%d] local node %D number of subdomains %D: ",rank,recvs2[cnt],recvs2[cnt+1]);CHKERRQ(ierr); 90030dcb7c9SBarry Smith for (k=0; k<recvs2[cnt+1]; k++) { 9017904a332SBarry Smith ierr = PetscSynchronizedPrintf(comm,"%D ",recvs2[cnt+2+k]);CHKERRQ(ierr); 90230dcb7c9SBarry Smith } 90330dcb7c9SBarry Smith cnt += 2 + recvs2[cnt+1]; 90430dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"\n");CHKERRQ(ierr); 90530dcb7c9SBarry Smith } 90630dcb7c9SBarry Smith } 9070ec8b6e3SBarry Smith ierr = PetscSynchronizedFlush(comm,PETSC_STDOUT);CHKERRQ(ierr); 90807b52d57SBarry Smith } /* ----------------------------------- */ 90930dcb7c9SBarry Smith 91030dcb7c9SBarry Smith /* count number subdomains for each local node */ 911785e854fSJed Brown ierr = PetscMalloc1(size,&nprocs);CHKERRQ(ierr); 91232dcc486SBarry Smith ierr = PetscMemzero(nprocs,size*sizeof(PetscInt));CHKERRQ(ierr); 91330dcb7c9SBarry Smith cnt = 0; 91430dcb7c9SBarry Smith for (i=0; i<nrecvs2; i++) { 91530dcb7c9SBarry Smith nt = recvs2[cnt++]; 91630dcb7c9SBarry Smith for (j=0; j<nt; j++) { 917f6e5521dSKarl Rupp for (k=0; k<recvs2[cnt+1]; k++) nprocs[recvs2[cnt+2+k]]++; 91830dcb7c9SBarry Smith cnt += 2 + recvs2[cnt+1]; 91930dcb7c9SBarry Smith } 92030dcb7c9SBarry Smith } 92130dcb7c9SBarry Smith nt = 0; for (i=0; i<size; i++) nt += (nprocs[i] > 0); 92230dcb7c9SBarry Smith *nproc = nt; 923785e854fSJed Brown ierr = PetscMalloc1((nt+1),procs);CHKERRQ(ierr); 924785e854fSJed Brown ierr = PetscMalloc1((nt+1),numprocs);CHKERRQ(ierr); 925785e854fSJed Brown ierr = PetscMalloc1((nt+1),indices);CHKERRQ(ierr); 9260298fd71SBarry Smith for (i=0;i<nt+1;i++) (*indices)[i]=NULL; 927785e854fSJed Brown ierr = PetscMalloc1(size,&bprocs);CHKERRQ(ierr); 92830dcb7c9SBarry Smith cnt = 0; 92930dcb7c9SBarry Smith for (i=0; i<size; i++) { 93030dcb7c9SBarry Smith if (nprocs[i] > 0) { 93130dcb7c9SBarry Smith bprocs[i] = cnt; 93230dcb7c9SBarry Smith (*procs)[cnt] = i; 93330dcb7c9SBarry Smith (*numprocs)[cnt] = nprocs[i]; 934785e854fSJed Brown ierr = PetscMalloc1(nprocs[i],&(*indices)[cnt]);CHKERRQ(ierr); 93530dcb7c9SBarry Smith cnt++; 93630dcb7c9SBarry Smith } 93730dcb7c9SBarry Smith } 93830dcb7c9SBarry Smith 93930dcb7c9SBarry Smith /* make the list of subdomains for each nontrivial local node */ 94032dcc486SBarry Smith ierr = PetscMemzero(*numprocs,nt*sizeof(PetscInt));CHKERRQ(ierr); 94130dcb7c9SBarry Smith cnt = 0; 94230dcb7c9SBarry Smith for (i=0; i<nrecvs2; i++) { 94330dcb7c9SBarry Smith nt = recvs2[cnt++]; 94430dcb7c9SBarry Smith for (j=0; j<nt; j++) { 945f6e5521dSKarl Rupp for (k=0; k<recvs2[cnt+1]; k++) (*indices)[bprocs[recvs2[cnt+2+k]]][(*numprocs)[bprocs[recvs2[cnt+2+k]]]++] = recvs2[cnt]; 94630dcb7c9SBarry Smith cnt += 2 + recvs2[cnt+1]; 94730dcb7c9SBarry Smith } 94830dcb7c9SBarry Smith } 94930dcb7c9SBarry Smith ierr = PetscFree(bprocs);CHKERRQ(ierr); 95007b52d57SBarry Smith ierr = PetscFree(recvs2);CHKERRQ(ierr); 95130dcb7c9SBarry Smith 95207b52d57SBarry Smith /* sort the node indexing by their global numbers */ 95307b52d57SBarry Smith nt = *nproc; 95407b52d57SBarry Smith for (i=0; i<nt; i++) { 955785e854fSJed Brown ierr = PetscMalloc1(((*numprocs)[i]),&tmp);CHKERRQ(ierr); 956f6e5521dSKarl Rupp for (j=0; j<(*numprocs)[i]; j++) tmp[j] = lindices[(*indices)[i][j]]; 95707b52d57SBarry Smith ierr = PetscSortIntWithArray((*numprocs)[i],tmp,(*indices)[i]);CHKERRQ(ierr); 95807b52d57SBarry Smith ierr = PetscFree(tmp);CHKERRQ(ierr); 95907b52d57SBarry Smith } 96007b52d57SBarry Smith 96107b52d57SBarry Smith if (debug) { /* ----------------------------------- */ 96230dcb7c9SBarry Smith nt = *nproc; 96330dcb7c9SBarry Smith for (i=0; i<nt; i++) { 9647904a332SBarry Smith ierr = PetscSynchronizedPrintf(comm,"[%d] subdomain %D number of indices %D: ",rank,(*procs)[i],(*numprocs)[i]);CHKERRQ(ierr); 96530dcb7c9SBarry Smith for (j=0; j<(*numprocs)[i]; j++) { 9667904a332SBarry Smith ierr = PetscSynchronizedPrintf(comm,"%D ",(*indices)[i][j]);CHKERRQ(ierr); 96730dcb7c9SBarry Smith } 96830dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"\n");CHKERRQ(ierr); 96930dcb7c9SBarry Smith } 9700ec8b6e3SBarry Smith ierr = PetscSynchronizedFlush(comm,PETSC_STDOUT);CHKERRQ(ierr); 97107b52d57SBarry Smith } /* ----------------------------------- */ 97230dcb7c9SBarry Smith 97330dcb7c9SBarry Smith /* wait on sends */ 97430dcb7c9SBarry Smith if (nsends2) { 975785e854fSJed Brown ierr = PetscMalloc1(nsends2,&send_status);CHKERRQ(ierr); 97630dcb7c9SBarry Smith ierr = MPI_Waitall(nsends2,send_waits,send_status);CHKERRQ(ierr); 97730dcb7c9SBarry Smith ierr = PetscFree(send_status);CHKERRQ(ierr); 97830dcb7c9SBarry Smith } 97930dcb7c9SBarry Smith 98030dcb7c9SBarry Smith ierr = PetscFree(starts3);CHKERRQ(ierr); 98130dcb7c9SBarry Smith ierr = PetscFree(dest);CHKERRQ(ierr); 98230dcb7c9SBarry Smith ierr = PetscFree(send_waits);CHKERRQ(ierr); 9833677ff5aSBarry Smith 984bc8ff85bSBarry Smith ierr = PetscFree(nownedsenders);CHKERRQ(ierr); 985bc8ff85bSBarry Smith ierr = PetscFree(ownedsenders);CHKERRQ(ierr); 986bc8ff85bSBarry Smith ierr = PetscFree(starts);CHKERRQ(ierr); 98730dcb7c9SBarry Smith ierr = PetscFree(starts2);CHKERRQ(ierr); 98830dcb7c9SBarry Smith ierr = PetscFree(lens2);CHKERRQ(ierr); 98989d82c54SBarry Smith 99089d82c54SBarry Smith ierr = PetscFree(source);CHKERRQ(ierr); 99197f1f81fSBarry Smith ierr = PetscFree(len);CHKERRQ(ierr); 99289d82c54SBarry Smith ierr = PetscFree(recvs);CHKERRQ(ierr); 9933a96401aSBarry Smith ierr = PetscFree(nprocs);CHKERRQ(ierr); 99430dcb7c9SBarry Smith ierr = PetscFree(sends2);CHKERRQ(ierr); 99524cf384cSBarry Smith 99624cf384cSBarry Smith /* put the information about myself as the first entry in the list */ 99724cf384cSBarry Smith first_procs = (*procs)[0]; 99824cf384cSBarry Smith first_numprocs = (*numprocs)[0]; 99924cf384cSBarry Smith first_indices = (*indices)[0]; 100024cf384cSBarry Smith for (i=0; i<*nproc; i++) { 100124cf384cSBarry Smith if ((*procs)[i] == rank) { 100224cf384cSBarry Smith (*procs)[0] = (*procs)[i]; 100324cf384cSBarry Smith (*numprocs)[0] = (*numprocs)[i]; 100424cf384cSBarry Smith (*indices)[0] = (*indices)[i]; 100524cf384cSBarry Smith (*procs)[i] = first_procs; 100624cf384cSBarry Smith (*numprocs)[i] = first_numprocs; 100724cf384cSBarry Smith (*indices)[i] = first_indices; 100824cf384cSBarry Smith break; 100924cf384cSBarry Smith } 101024cf384cSBarry Smith } 101189d82c54SBarry Smith PetscFunctionReturn(0); 101289d82c54SBarry Smith } 101389d82c54SBarry Smith 10144a2ae208SSatish Balay #undef __FUNCT__ 10154a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingRestoreInfo" 101607b52d57SBarry Smith /*@C 101707b52d57SBarry Smith ISLocalToGlobalMappingRestoreInfo - Frees the memory allocated by ISLocalToGlobalMappingGetInfo() 101889d82c54SBarry Smith 101907b52d57SBarry Smith Collective on ISLocalToGlobalMapping 102007b52d57SBarry Smith 102107b52d57SBarry Smith Input Parameters: 102207b52d57SBarry Smith . mapping - the mapping from local to global indexing 102307b52d57SBarry Smith 102407b52d57SBarry Smith Output Parameter: 102507b52d57SBarry Smith + nproc - number of processors that are connected to this one 102607b52d57SBarry Smith . proc - neighboring processors 102707b52d57SBarry Smith . numproc - number of indices for each processor 102807b52d57SBarry Smith - indices - indices of local nodes shared with neighbor (sorted by global numbering) 102907b52d57SBarry Smith 103007b52d57SBarry Smith Level: advanced 103107b52d57SBarry Smith 103207b52d57SBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreateIS(), ISLocalToGlobalMappingCreate(), 103307b52d57SBarry Smith ISLocalToGlobalMappingGetInfo() 103407b52d57SBarry Smith @*/ 10357087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingRestoreInfo(ISLocalToGlobalMapping mapping,PetscInt *nproc,PetscInt *procs[],PetscInt *numprocs[],PetscInt **indices[]) 103607b52d57SBarry Smith { 10376849ba73SBarry Smith PetscErrorCode ierr; 103832dcc486SBarry Smith PetscInt i; 103907b52d57SBarry Smith 104007b52d57SBarry Smith PetscFunctionBegin; 104105b42c5fSBarry Smith ierr = PetscFree(*procs);CHKERRQ(ierr); 104205b42c5fSBarry Smith ierr = PetscFree(*numprocs);CHKERRQ(ierr); 104300ff320aSBarry Smith if (*indices) { 104405b42c5fSBarry Smith ierr = PetscFree((*indices)[0]);CHKERRQ(ierr); 104500ff320aSBarry Smith for (i=1; i<*nproc; i++) { 104605b42c5fSBarry Smith ierr = PetscFree((*indices)[i]);CHKERRQ(ierr); 104707b52d57SBarry Smith } 104807b52d57SBarry Smith ierr = PetscFree(*indices);CHKERRQ(ierr); 104924cf384cSBarry Smith } 105007b52d57SBarry Smith PetscFunctionReturn(0); 105107b52d57SBarry Smith } 105286994e45SJed Brown 105386994e45SJed Brown #undef __FUNCT__ 105486994e45SJed Brown #define __FUNCT__ "ISLocalToGlobalMappingGetIndices" 105586994e45SJed Brown /*@C 105686994e45SJed Brown ISLocalToGlobalMappingGetIndices - Get global indices for every local point 105786994e45SJed Brown 105886994e45SJed Brown Not Collective 105986994e45SJed Brown 106086994e45SJed Brown Input Arguments: 106186994e45SJed Brown . ltog - local to global mapping 106286994e45SJed Brown 106386994e45SJed Brown Output Arguments: 106486994e45SJed Brown . array - array of indices 106586994e45SJed Brown 106686994e45SJed Brown Level: advanced 106786994e45SJed Brown 106886994e45SJed Brown .seealso: ISLocalToGlobalMappingCreate(), ISLocalToGlobalMappingApply(), ISLocalToGlobalMappingRestoreIndices() 106986994e45SJed Brown @*/ 10707087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingGetIndices(ISLocalToGlobalMapping ltog,const PetscInt **array) 107186994e45SJed Brown { 107286994e45SJed Brown PetscFunctionBegin; 107386994e45SJed Brown PetscValidHeaderSpecific(ltog,IS_LTOGM_CLASSID,1); 107486994e45SJed Brown PetscValidPointer(array,2); 107586994e45SJed Brown *array = ltog->indices; 107686994e45SJed Brown PetscFunctionReturn(0); 107786994e45SJed Brown } 107886994e45SJed Brown 107986994e45SJed Brown #undef __FUNCT__ 108086994e45SJed Brown #define __FUNCT__ "ISLocalToGlobalMappingRestoreIndices" 108186994e45SJed Brown /*@C 108286994e45SJed Brown ISLocalToGlobalMappingRestoreIndices - Restore indices obtained with ISLocalToGlobalMappingRestoreIndices() 108386994e45SJed Brown 108486994e45SJed Brown Not Collective 108586994e45SJed Brown 108686994e45SJed Brown Input Arguments: 108786994e45SJed Brown + ltog - local to global mapping 108886994e45SJed Brown - array - array of indices 108986994e45SJed Brown 109086994e45SJed Brown Level: advanced 109186994e45SJed Brown 109286994e45SJed Brown .seealso: ISLocalToGlobalMappingCreate(), ISLocalToGlobalMappingApply(), ISLocalToGlobalMappingGetIndices() 109386994e45SJed Brown @*/ 10947087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingRestoreIndices(ISLocalToGlobalMapping ltog,const PetscInt **array) 109586994e45SJed Brown { 109686994e45SJed Brown PetscFunctionBegin; 109786994e45SJed Brown PetscValidHeaderSpecific(ltog,IS_LTOGM_CLASSID,1); 109886994e45SJed Brown PetscValidPointer(array,2); 109986994e45SJed Brown if (*array != ltog->indices) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_BADPTR,"Trying to return mismatched pointer"); 11000298fd71SBarry Smith *array = NULL; 110186994e45SJed Brown PetscFunctionReturn(0); 110286994e45SJed Brown } 1103f7efa3c7SJed Brown 1104f7efa3c7SJed Brown #undef __FUNCT__ 1105f7efa3c7SJed Brown #define __FUNCT__ "ISLocalToGlobalMappingConcatenate" 1106f7efa3c7SJed Brown /*@C 1107f7efa3c7SJed Brown ISLocalToGlobalMappingConcatenate - Create a new mapping that concatenates a list of mappings 1108f7efa3c7SJed Brown 1109f7efa3c7SJed Brown Not Collective 1110f7efa3c7SJed Brown 1111f7efa3c7SJed Brown Input Arguments: 1112f7efa3c7SJed Brown + comm - communicator for the new mapping, must contain the communicator of every mapping to concatenate 1113f7efa3c7SJed Brown . n - number of mappings to concatenate 1114f7efa3c7SJed Brown - ltogs - local to global mappings 1115f7efa3c7SJed Brown 1116f7efa3c7SJed Brown Output Arguments: 1117f7efa3c7SJed Brown . ltogcat - new mapping 1118f7efa3c7SJed Brown 1119f7efa3c7SJed Brown Level: advanced 1120f7efa3c7SJed Brown 1121f7efa3c7SJed Brown .seealso: ISLocalToGlobalMappingCreate() 1122f7efa3c7SJed Brown @*/ 1123f7efa3c7SJed Brown PetscErrorCode ISLocalToGlobalMappingConcatenate(MPI_Comm comm,PetscInt n,const ISLocalToGlobalMapping ltogs[],ISLocalToGlobalMapping *ltogcat) 1124f7efa3c7SJed Brown { 1125f7efa3c7SJed Brown PetscInt i,cnt,m,*idx; 1126f7efa3c7SJed Brown PetscErrorCode ierr; 1127f7efa3c7SJed Brown 1128f7efa3c7SJed Brown PetscFunctionBegin; 1129f7efa3c7SJed Brown if (n < 0) SETERRQ1(comm,PETSC_ERR_ARG_OUTOFRANGE,"Must have a non-negative number of mappings, given %D",n); 1130f7efa3c7SJed Brown if (n > 0) PetscValidPointer(ltogs,3); 1131f7efa3c7SJed Brown for (i=0; i<n; i++) PetscValidHeaderSpecific(ltogs[i],IS_LTOGM_CLASSID,3); 1132f7efa3c7SJed Brown PetscValidPointer(ltogcat,4); 1133f7efa3c7SJed Brown for (cnt=0,i=0; i<n; i++) { 1134f7efa3c7SJed Brown ierr = ISLocalToGlobalMappingGetSize(ltogs[i],&m);CHKERRQ(ierr); 1135f7efa3c7SJed Brown cnt += m; 1136f7efa3c7SJed Brown } 1137785e854fSJed Brown ierr = PetscMalloc1(cnt,&idx);CHKERRQ(ierr); 1138f7efa3c7SJed Brown for (cnt=0,i=0; i<n; i++) { 1139f7efa3c7SJed Brown const PetscInt *subidx; 1140f7efa3c7SJed Brown ierr = ISLocalToGlobalMappingGetSize(ltogs[i],&m);CHKERRQ(ierr); 1141f7efa3c7SJed Brown ierr = ISLocalToGlobalMappingGetIndices(ltogs[i],&subidx);CHKERRQ(ierr); 1142f7efa3c7SJed Brown ierr = PetscMemcpy(&idx[cnt],subidx,m*sizeof(PetscInt));CHKERRQ(ierr); 1143f7efa3c7SJed Brown ierr = ISLocalToGlobalMappingRestoreIndices(ltogs[i],&subidx);CHKERRQ(ierr); 1144f7efa3c7SJed Brown cnt += m; 1145f7efa3c7SJed Brown } 1146f7efa3c7SJed Brown ierr = ISLocalToGlobalMappingCreate(comm,cnt,idx,PETSC_OWN_POINTER,ltogcat);CHKERRQ(ierr); 1147f7efa3c7SJed Brown PetscFunctionReturn(0); 1148f7efa3c7SJed Brown } 114904a59952SBarry Smith 115004a59952SBarry Smith 1151