10c735eedSKris Buschelman #define PETSCVEC_DLL 22362add9SBarry Smith 3e1fa1e0fSSatish Balay #include "petscvec.h" /*I "petscsys.h" I*/ 412d94eddSLisandro Dalcin #include "include/private/isimpl.h" /*I "petscis.h" I*/ 52362add9SBarry Smith 6166c7f25SBarry Smith PetscCookie PETSCVEC_DLLEXPORT IS_LTOGM_COOKIE; 78e58c17dSMatthew Knepley 84a2ae208SSatish Balay #undef __FUNCT__ 94a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingGetSize" 103b9aefa3SBarry Smith /*@C 113b9aefa3SBarry Smith ISLocalToGlobalMappingGetSize - Gets the local size of a local to global mapping. 123b9aefa3SBarry Smith 133b9aefa3SBarry Smith Not Collective 143b9aefa3SBarry Smith 153b9aefa3SBarry Smith Input Parameter: 163b9aefa3SBarry Smith . ltog - local to global mapping 173b9aefa3SBarry Smith 183b9aefa3SBarry Smith Output Parameter: 193b9aefa3SBarry Smith . n - the number of entries in the local mapping 203b9aefa3SBarry Smith 213b9aefa3SBarry Smith Level: advanced 223b9aefa3SBarry Smith 23273d9f13SBarry Smith Concepts: mapping^local to global 243b9aefa3SBarry Smith 253b9aefa3SBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreate() 263b9aefa3SBarry Smith @*/ 270c735eedSKris Buschelman PetscErrorCode PETSCVEC_DLLEXPORT ISLocalToGlobalMappingGetSize(ISLocalToGlobalMapping mapping,PetscInt *n) 283b9aefa3SBarry Smith { 293b9aefa3SBarry Smith PetscFunctionBegin; 304482741eSBarry Smith PetscValidHeaderSpecific(mapping,IS_LTOGM_COOKIE,1); 314482741eSBarry Smith PetscValidIntPointer(n,2); 323b9aefa3SBarry Smith *n = mapping->n; 333b9aefa3SBarry Smith PetscFunctionReturn(0); 343b9aefa3SBarry Smith } 353b9aefa3SBarry Smith 364a2ae208SSatish Balay #undef __FUNCT__ 374a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingView" 385a5d4f66SBarry Smith /*@C 395a5d4f66SBarry Smith ISLocalToGlobalMappingView - View a local to global mapping 405a5d4f66SBarry Smith 41b9cd556bSLois Curfman McInnes Not Collective 42b9cd556bSLois Curfman McInnes 435a5d4f66SBarry Smith Input Parameters: 443b9aefa3SBarry Smith + ltog - local to global mapping 453b9aefa3SBarry Smith - viewer - viewer 465a5d4f66SBarry Smith 47a997ad1aSLois Curfman McInnes Level: advanced 48a997ad1aSLois Curfman McInnes 49273d9f13SBarry Smith Concepts: mapping^local to global 505a5d4f66SBarry Smith 515a5d4f66SBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreate() 525a5d4f66SBarry Smith @*/ 530c735eedSKris Buschelman PetscErrorCode PETSCVEC_DLLEXPORT ISLocalToGlobalMappingView(ISLocalToGlobalMapping mapping,PetscViewer viewer) 545a5d4f66SBarry Smith { 5532dcc486SBarry Smith PetscInt i; 5632dcc486SBarry Smith PetscMPIInt rank; 5732077d6dSBarry Smith PetscTruth iascii; 586849ba73SBarry Smith PetscErrorCode ierr; 595a5d4f66SBarry Smith 605a5d4f66SBarry Smith PetscFunctionBegin; 614482741eSBarry Smith PetscValidHeaderSpecific(mapping,IS_LTOGM_COOKIE,1); 623050cee2SBarry Smith if (!viewer) { 637adad957SLisandro Dalcin ierr = PetscViewerASCIIGetStdout(((PetscObject)mapping)->comm,&viewer);CHKERRQ(ierr); 643050cee2SBarry Smith } 654482741eSBarry Smith PetscValidHeaderSpecific(viewer,PETSC_VIEWER_COOKIE,2); 665a5d4f66SBarry Smith 677adad957SLisandro Dalcin ierr = MPI_Comm_rank(((PetscObject)mapping)->comm,&rank);CHKERRQ(ierr); 6832077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 6932077d6dSBarry Smith if (iascii) { 705a5d4f66SBarry Smith for (i=0; i<mapping->n; i++) { 71b0a32e0cSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] %d %d\n",rank,i,mapping->indices[i]);CHKERRQ(ierr); 726831982aSBarry Smith } 73b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 746831982aSBarry Smith } else { 75958c9bccSBarry Smith SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported for ISLocalToGlobalMapping",((PetscObject)viewer)->type_name); 765a5d4f66SBarry Smith } 775a5d4f66SBarry Smith 785a5d4f66SBarry Smith PetscFunctionReturn(0); 795a5d4f66SBarry Smith } 805a5d4f66SBarry Smith 814a2ae208SSatish Balay #undef __FUNCT__ 824a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingCreateIS" 831f428162SBarry Smith /*@ 842bdab257SBarry Smith ISLocalToGlobalMappingCreateIS - Creates a mapping between a local (0 to n) 852bdab257SBarry Smith ordering and a global parallel ordering. 862bdab257SBarry Smith 870f5bd95cSBarry Smith Not collective 88b9cd556bSLois Curfman McInnes 89a997ad1aSLois Curfman McInnes Input Parameter: 902bdab257SBarry Smith . is - index set containing the global numbers for each local 912bdab257SBarry Smith 92a997ad1aSLois Curfman McInnes Output Parameter: 932bdab257SBarry Smith . mapping - new mapping data structure 942bdab257SBarry Smith 95a997ad1aSLois Curfman McInnes Level: advanced 96a997ad1aSLois Curfman McInnes 97273d9f13SBarry Smith Concepts: mapping^local to global 982bdab257SBarry Smith 992bdab257SBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreate() 1002bdab257SBarry Smith @*/ 1010c735eedSKris Buschelman PetscErrorCode PETSCVEC_DLLEXPORT ISLocalToGlobalMappingCreateIS(IS is,ISLocalToGlobalMapping *mapping) 1022bdab257SBarry Smith { 1036849ba73SBarry Smith PetscErrorCode ierr; 104*5d0c19d7SBarry Smith PetscInt n; 105*5d0c19d7SBarry Smith const PetscInt *indices; 1062bdab257SBarry Smith MPI_Comm comm; 1073a40ed3dSBarry Smith 1083a40ed3dSBarry Smith PetscFunctionBegin; 1094482741eSBarry Smith PetscValidHeaderSpecific(is,IS_COOKIE,1); 1104482741eSBarry Smith PetscValidPointer(mapping,2); 1112bdab257SBarry Smith 1122bdab257SBarry Smith ierr = PetscObjectGetComm((PetscObject)is,&comm);CHKERRQ(ierr); 1133b9aefa3SBarry Smith ierr = ISGetLocalSize(is,&n);CHKERRQ(ierr); 1142bdab257SBarry Smith ierr = ISGetIndices(is,&indices);CHKERRQ(ierr); 1152bdab257SBarry Smith ierr = ISLocalToGlobalMappingCreate(comm,n,indices,mapping);CHKERRQ(ierr); 1162bdab257SBarry Smith ierr = ISRestoreIndices(is,&indices);CHKERRQ(ierr); 1172bdab257SBarry Smith 1183a40ed3dSBarry Smith PetscFunctionReturn(0); 1192bdab257SBarry Smith } 1205a5d4f66SBarry Smith 121b46b645bSBarry Smith 1224a2ae208SSatish Balay #undef __FUNCT__ 1234a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingCreate" 124ba5bb76aSSatish Balay /*@ 12590f02eecSBarry Smith ISLocalToGlobalMappingCreate - Creates a mapping between a local (0 to n) 12690f02eecSBarry Smith ordering and a global parallel ordering. 1272362add9SBarry Smith 12889d82c54SBarry Smith Not Collective, but communicator may have more than one process 129b9cd556bSLois Curfman McInnes 1302362add9SBarry Smith Input Parameters: 13189d82c54SBarry Smith + comm - MPI communicator 13290f02eecSBarry Smith . n - the number of local elements 133b9cd556bSLois Curfman McInnes - indices - the global index for each local element 1342362add9SBarry Smith 135a997ad1aSLois Curfman McInnes Output Parameter: 13690f02eecSBarry Smith . mapping - new mapping data structure 1372362add9SBarry Smith 138a997ad1aSLois Curfman McInnes Level: advanced 139a997ad1aSLois Curfman McInnes 140273d9f13SBarry Smith Concepts: mapping^local to global 1412362add9SBarry Smith 142b46b645bSBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreateIS(), ISLocalToGlobalMappingCreateNC() 1432362add9SBarry Smith @*/ 1440c735eedSKris Buschelman PetscErrorCode PETSCVEC_DLLEXPORT ISLocalToGlobalMappingCreate(MPI_Comm cm,PetscInt n,const PetscInt indices[],ISLocalToGlobalMapping *mapping) 1452362add9SBarry Smith { 1466849ba73SBarry Smith PetscErrorCode ierr; 14732dcc486SBarry Smith PetscInt *in; 148b46b645bSBarry Smith 149b46b645bSBarry Smith PetscFunctionBegin; 15073911063SBarry Smith if (n) PetscValidIntPointer(indices,3); 1514482741eSBarry Smith PetscValidPointer(mapping,4); 1527c334f02SBarry Smith ierr = PetscMalloc(n*sizeof(PetscInt),&in);CHKERRQ(ierr); 15332dcc486SBarry Smith ierr = PetscMemcpy(in,indices,n*sizeof(PetscInt));CHKERRQ(ierr); 154b46b645bSBarry Smith ierr = ISLocalToGlobalMappingCreateNC(cm,n,in,mapping);CHKERRQ(ierr); 155b46b645bSBarry Smith PetscFunctionReturn(0); 156b46b645bSBarry Smith } 157b46b645bSBarry Smith 158b46b645bSBarry Smith #undef __FUNCT__ 159b46b645bSBarry Smith #define __FUNCT__ "ISLocalToGlobalMappingCreateNC" 160b46b645bSBarry Smith /*@C 161b46b645bSBarry Smith ISLocalToGlobalMappingCreateNC - Creates a mapping between a local (0 to n) 162b46b645bSBarry Smith ordering and a global parallel ordering. 163b46b645bSBarry Smith 164b46b645bSBarry Smith Not Collective, but communicator may have more than one process 165b46b645bSBarry Smith 166b46b645bSBarry Smith Input Parameters: 167b46b645bSBarry Smith + comm - MPI communicator 168b46b645bSBarry Smith . n - the number of local elements 169b46b645bSBarry Smith - indices - the global index for each local element 170b46b645bSBarry Smith 171b46b645bSBarry Smith Output Parameter: 172b46b645bSBarry Smith . mapping - new mapping data structure 173b46b645bSBarry Smith 174b46b645bSBarry Smith Level: developer 175b46b645bSBarry Smith 176b46b645bSBarry Smith Notes: Does not copy the indices, just keeps the pointer to the indices. The ISLocalToGlobalMappingDestroy() 177b46b645bSBarry Smith will free the space so it must be obtained with PetscMalloc() and it must not be freed elsewhere. 178b46b645bSBarry Smith 179b46b645bSBarry Smith Concepts: mapping^local to global 180b46b645bSBarry Smith 181b46b645bSBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreateIS(), ISLocalToGlobalMappingCreate() 182b46b645bSBarry Smith @*/ 1830c735eedSKris Buschelman PetscErrorCode PETSCVEC_DLLEXPORT ISLocalToGlobalMappingCreateNC(MPI_Comm cm,PetscInt n,const PetscInt indices[],ISLocalToGlobalMapping *mapping) 184b46b645bSBarry Smith { 185dfbe8321SBarry Smith PetscErrorCode ierr; 18623f7533aSBarry Smith 1873a40ed3dSBarry Smith PetscFunctionBegin; 188ad48de64SLisandro Dalcin if (n) PetscValidIntPointer(indices,3); 1894482741eSBarry Smith PetscValidPointer(mapping,4); 1908e58c17dSMatthew Knepley *mapping = PETSC_NULL; 1918e58c17dSMatthew Knepley #ifndef PETSC_USE_DYNAMIC_LIBRARIES 1922b6de112SBarry Smith ierr = ISInitializePackage(PETSC_NULL);CHKERRQ(ierr); 1938e58c17dSMatthew Knepley #endif 1942362add9SBarry Smith 19552e6d16bSBarry Smith ierr = PetscHeaderCreate(*mapping,_p_ISLocalToGlobalMapping,int,IS_LTOGM_COOKIE,0,"ISLocalToGlobalMapping", 19652e6d16bSBarry Smith cm,ISLocalToGlobalMappingDestroy,ISLocalToGlobalMappingView);CHKERRQ(ierr); 197d4bb536fSBarry Smith 198d4bb536fSBarry Smith (*mapping)->n = n; 19932dcc486SBarry Smith (*mapping)->indices = (PetscInt*)indices; 20038f2d2fdSLisandro Dalcin ierr = PetscLogObjectMemory(*mapping,n*sizeof(PetscInt));CHKERRQ(ierr); 201d4bb536fSBarry Smith 202d4bb536fSBarry Smith /* 203d4bb536fSBarry Smith Do not create the global to local mapping. This is only created if 204d4bb536fSBarry Smith ISGlobalToLocalMapping() is called 205d4bb536fSBarry Smith */ 206d4bb536fSBarry Smith (*mapping)->globals = 0; 2073a40ed3dSBarry Smith PetscFunctionReturn(0); 2082362add9SBarry Smith } 2092362add9SBarry Smith 2104a2ae208SSatish Balay #undef __FUNCT__ 2114a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingBlock" 212bce096a4SSatish Balay /*@ 213323b833fSBarry Smith ISLocalToGlobalMappingBlock - Creates a blocked index version of an 214323b833fSBarry Smith ISLocalToGlobalMapping that is appropriate for MatSetLocalToGlobalMappingBlock() 215323b833fSBarry Smith and VecSetLocalToGlobalMappingBlock(). 216323b833fSBarry Smith 217323b833fSBarry Smith Not Collective, but communicator may have more than one process 218323b833fSBarry Smith 219323b833fSBarry Smith Input Parameters: 220323b833fSBarry Smith + inmap - original point-wise mapping 221323b833fSBarry Smith - bs - block size 222323b833fSBarry Smith 223323b833fSBarry Smith Output Parameter: 22469eb54c3SBarry Smith . outmap - block based mapping; the indices are relative to BLOCKS, not individual vector or matrix entries. 225323b833fSBarry Smith 226323b833fSBarry Smith Level: advanced 227323b833fSBarry Smith 228323b833fSBarry Smith Concepts: mapping^local to global 229323b833fSBarry Smith 230323b833fSBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreate(), ISLocalToGlobalMappingCreateIS() 231323b833fSBarry Smith @*/ 2320c735eedSKris Buschelman PetscErrorCode PETSCVEC_DLLEXPORT ISLocalToGlobalMappingBlock(ISLocalToGlobalMapping inmap,PetscInt bs,ISLocalToGlobalMapping *outmap) 233323b833fSBarry Smith { 2346849ba73SBarry Smith PetscErrorCode ierr; 23532dcc486SBarry Smith PetscInt *ii,i,n; 236323b833fSBarry Smith 237323b833fSBarry Smith PetscFunctionBegin; 238ad48de64SLisandro Dalcin PetscValidHeaderSpecific(inmap,IS_LTOGM_COOKIE,1); 239ad48de64SLisandro Dalcin PetscValidPointer(outmap,1); 240323b833fSBarry Smith if (bs > 1) { 241323b833fSBarry Smith n = inmap->n/bs; 24212ce3465SBarry Smith if (n*bs != inmap->n) SETERRQ(PETSC_ERR_ARG_INCOMP,"Pointwise mapping length is not divisible by block size"); 24332dcc486SBarry Smith ierr = PetscMalloc(n*sizeof(PetscInt),&ii);CHKERRQ(ierr); 244323b833fSBarry Smith for (i=0; i<n; i++) { 245db032c9dSBarry Smith ii[i] = inmap->indices[bs*i]/bs; 246323b833fSBarry Smith } 2477adad957SLisandro Dalcin ierr = ISLocalToGlobalMappingCreate(((PetscObject)inmap)->comm,n,ii,outmap);CHKERRQ(ierr); 248323b833fSBarry Smith ierr = PetscFree(ii);CHKERRQ(ierr); 249323b833fSBarry Smith } else { 250323b833fSBarry Smith ierr = PetscObjectReference((PetscObject)inmap);CHKERRQ(ierr); 251c3122656SLisandro Dalcin *outmap = inmap; 252323b833fSBarry Smith } 253323b833fSBarry Smith PetscFunctionReturn(0); 254323b833fSBarry Smith } 255323b833fSBarry Smith 2564a2ae208SSatish Balay #undef __FUNCT__ 2574a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingDestroy" 25890f02eecSBarry Smith /*@ 25990f02eecSBarry Smith ISLocalToGlobalMappingDestroy - Destroys a mapping between a local (0 to n) 26090f02eecSBarry Smith ordering and a global parallel ordering. 26190f02eecSBarry Smith 2620f5bd95cSBarry Smith Note Collective 263b9cd556bSLois Curfman McInnes 26490f02eecSBarry Smith Input Parameters: 26590f02eecSBarry Smith . mapping - mapping data structure 26690f02eecSBarry Smith 267a997ad1aSLois Curfman McInnes Level: advanced 268a997ad1aSLois Curfman McInnes 2693acfe500SLois Curfman McInnes .seealso: ISLocalToGlobalMappingCreate() 27090f02eecSBarry Smith @*/ 2710c735eedSKris Buschelman PetscErrorCode PETSCVEC_DLLEXPORT ISLocalToGlobalMappingDestroy(ISLocalToGlobalMapping mapping) 27290f02eecSBarry Smith { 273dfbe8321SBarry Smith PetscErrorCode ierr; 2743a40ed3dSBarry Smith PetscFunctionBegin; 275ad48de64SLisandro Dalcin PetscValidHeaderSpecific(mapping,IS_LTOGM_COOKIE,1); 2767adad957SLisandro Dalcin if (--((PetscObject)mapping)->refct > 0) PetscFunctionReturn(0); 277606d414cSSatish Balay ierr = PetscFree(mapping->indices);CHKERRQ(ierr); 27805b42c5fSBarry Smith ierr = PetscFree(mapping->globals);CHKERRQ(ierr); 279d38fa0fbSBarry Smith ierr = PetscHeaderDestroy(mapping);CHKERRQ(ierr); 2803a40ed3dSBarry Smith PetscFunctionReturn(0); 28190f02eecSBarry Smith } 28290f02eecSBarry Smith 2834a2ae208SSatish Balay #undef __FUNCT__ 2844a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingApplyIS" 28590f02eecSBarry Smith /*@ 2863acfe500SLois Curfman McInnes ISLocalToGlobalMappingApplyIS - Creates from an IS in the local numbering 2873acfe500SLois Curfman McInnes a new index set using the global numbering defined in an ISLocalToGlobalMapping 2883acfe500SLois Curfman McInnes context. 28990f02eecSBarry Smith 290b9cd556bSLois Curfman McInnes Not collective 291b9cd556bSLois Curfman McInnes 29290f02eecSBarry Smith Input Parameters: 293b9cd556bSLois Curfman McInnes + mapping - mapping between local and global numbering 294b9cd556bSLois Curfman McInnes - is - index set in local numbering 29590f02eecSBarry Smith 29690f02eecSBarry Smith Output Parameters: 29790f02eecSBarry Smith . newis - index set in global numbering 29890f02eecSBarry Smith 299a997ad1aSLois Curfman McInnes Level: advanced 300a997ad1aSLois Curfman McInnes 301273d9f13SBarry Smith Concepts: mapping^local to global 3023acfe500SLois Curfman McInnes 30390f02eecSBarry Smith .seealso: ISLocalToGlobalMappingApply(), ISLocalToGlobalMappingCreate(), 304d4bb536fSBarry Smith ISLocalToGlobalMappingDestroy(), ISGlobalToLocalMappingApply() 30590f02eecSBarry Smith @*/ 3060c735eedSKris Buschelman PetscErrorCode PETSCVEC_DLLEXPORT ISLocalToGlobalMappingApplyIS(ISLocalToGlobalMapping mapping,IS is,IS *newis) 30790f02eecSBarry Smith { 3086849ba73SBarry Smith PetscErrorCode ierr; 309*5d0c19d7SBarry Smith PetscInt n,i,*idxmap,*idxout,Nmax = mapping->n; 310*5d0c19d7SBarry Smith const PetscInt *idxin; 3113a40ed3dSBarry Smith 3123a40ed3dSBarry Smith PetscFunctionBegin; 313ad48de64SLisandro Dalcin PetscValidHeaderSpecific(mapping,IS_LTOGM_COOKIE,1); 3144482741eSBarry Smith PetscValidHeaderSpecific(is,IS_COOKIE,2); 3154482741eSBarry Smith PetscValidPointer(newis,3); 31690f02eecSBarry Smith 3173b9aefa3SBarry Smith ierr = ISGetLocalSize(is,&n);CHKERRQ(ierr); 31890f02eecSBarry Smith ierr = ISGetIndices(is,&idxin);CHKERRQ(ierr); 31990f02eecSBarry Smith idxmap = mapping->indices; 32090f02eecSBarry Smith 3217c334f02SBarry Smith ierr = PetscMalloc(n*sizeof(PetscInt),&idxout);CHKERRQ(ierr); 32290f02eecSBarry Smith for (i=0; i<n; i++) { 323590ac198SBarry Smith if (idxin[i] >= Nmax) SETERRQ3(PETSC_ERR_ARG_OUTOFRANGE,"Local index %d too large %d (max) at %d",idxin[i],Nmax-1,i); 32490f02eecSBarry Smith idxout[i] = idxmap[idxin[i]]; 32590f02eecSBarry Smith } 3263b9aefa3SBarry Smith ierr = ISRestoreIndices(is,&idxin);CHKERRQ(ierr); 327f7a1537bSLisandro Dalcin ierr = ISCreateGeneralNC(PETSC_COMM_SELF,n,idxout,newis);CHKERRQ(ierr); 3283a40ed3dSBarry Smith PetscFunctionReturn(0); 32990f02eecSBarry Smith } 33090f02eecSBarry Smith 33189d82c54SBarry Smith /*MC 3323acfe500SLois Curfman McInnes ISLocalToGlobalMappingApply - Takes a list of integers in a local numbering 3333acfe500SLois Curfman McInnes and converts them to the global numbering. 33490f02eecSBarry Smith 335b9cd556bSLois Curfman McInnes Not collective 336b9cd556bSLois Curfman McInnes 337bb25748dSBarry Smith Input Parameters: 338b9cd556bSLois Curfman McInnes + mapping - the local to global mapping context 339bb25748dSBarry Smith . N - number of integers 340b9cd556bSLois Curfman McInnes - in - input indices in local numbering 341bb25748dSBarry Smith 342bb25748dSBarry Smith Output Parameter: 343bb25748dSBarry Smith . out - indices in global numbering 344bb25748dSBarry Smith 3453b9aefa3SBarry Smith Synopsis: 346d360dc6fSBarry Smith PetscErrorCode ISLocalToGlobalMappingApply(ISLocalToGlobalMapping mapping,int N,int in[],int out[]) 3473b9aefa3SBarry Smith 348b9cd556bSLois Curfman McInnes Notes: 349b9cd556bSLois Curfman McInnes The in and out array parameters may be identical. 350d4bb536fSBarry Smith 351a997ad1aSLois Curfman McInnes Level: advanced 352a997ad1aSLois Curfman McInnes 353bb25748dSBarry Smith .seealso: ISLocalToGlobalMappingCreate(),ISLocalToGlobalMappingDestroy(), 3540752156aSBarry Smith ISLocalToGlobalMappingApplyIS(),AOCreateBasic(),AOApplicationToPetsc(), 355d4bb536fSBarry Smith AOPetscToApplication(), ISGlobalToLocalMappingApply() 356bb25748dSBarry Smith 357273d9f13SBarry Smith Concepts: mapping^local to global 358d4bb536fSBarry Smith 35989d82c54SBarry Smith M*/ 360d4bb536fSBarry Smith 361d4bb536fSBarry Smith /* -----------------------------------------------------------------------------------------*/ 362d4bb536fSBarry Smith 3634a2ae208SSatish Balay #undef __FUNCT__ 3644a2ae208SSatish Balay #define __FUNCT__ "ISGlobalToLocalMappingSetUp_Private" 365d4bb536fSBarry Smith /* 366d4bb536fSBarry Smith Creates the global fields in the ISLocalToGlobalMapping structure 367d4bb536fSBarry Smith */ 3686849ba73SBarry Smith static PetscErrorCode ISGlobalToLocalMappingSetUp_Private(ISLocalToGlobalMapping mapping) 369d4bb536fSBarry Smith { 3706849ba73SBarry Smith PetscErrorCode ierr; 37132dcc486SBarry Smith PetscInt i,*idx = mapping->indices,n = mapping->n,end,start,*globals; 372d4bb536fSBarry Smith 3733a40ed3dSBarry Smith PetscFunctionBegin; 374d4bb536fSBarry Smith end = 0; 375d4bb536fSBarry Smith start = 100000000; 376d4bb536fSBarry Smith 377d4bb536fSBarry Smith for (i=0; i<n; i++) { 378d4bb536fSBarry Smith if (idx[i] < 0) continue; 379d4bb536fSBarry Smith if (idx[i] < start) start = idx[i]; 380d4bb536fSBarry Smith if (idx[i] > end) end = idx[i]; 381d4bb536fSBarry Smith } 382d4bb536fSBarry Smith if (start > end) {start = 0; end = -1;} 383d4bb536fSBarry Smith mapping->globalstart = start; 384d4bb536fSBarry Smith mapping->globalend = end; 385d4bb536fSBarry Smith 38632dcc486SBarry Smith ierr = PetscMalloc((end-start+2)*sizeof(PetscInt),&globals);CHKERRQ(ierr); 387b0a32e0cSBarry Smith mapping->globals = globals; 388d4bb536fSBarry Smith for (i=0; i<end-start+1; i++) { 389d4bb536fSBarry Smith globals[i] = -1; 390d4bb536fSBarry Smith } 391d4bb536fSBarry Smith for (i=0; i<n; i++) { 392d4bb536fSBarry Smith if (idx[i] < 0) continue; 393d4bb536fSBarry Smith globals[idx[i] - start] = i; 394d4bb536fSBarry Smith } 395d4bb536fSBarry Smith 39652e6d16bSBarry Smith ierr = PetscLogObjectMemory(mapping,(end-start+1)*sizeof(PetscInt));CHKERRQ(ierr); 3973a40ed3dSBarry Smith PetscFunctionReturn(0); 398d4bb536fSBarry Smith } 399d4bb536fSBarry Smith 4004a2ae208SSatish Balay #undef __FUNCT__ 4014a2ae208SSatish Balay #define __FUNCT__ "ISGlobalToLocalMappingApply" 402d4bb536fSBarry Smith /*@ 403a997ad1aSLois Curfman McInnes ISGlobalToLocalMappingApply - Provides the local numbering for a list of integers 404a997ad1aSLois Curfman McInnes specified with a global numbering. 405d4bb536fSBarry Smith 406b9cd556bSLois Curfman McInnes Not collective 407b9cd556bSLois Curfman McInnes 408d4bb536fSBarry Smith Input Parameters: 409b9cd556bSLois Curfman McInnes + mapping - mapping between local and global numbering 410d4bb536fSBarry Smith . type - IS_GTOLM_MASK - replaces global indices with no local value with -1 411d4bb536fSBarry Smith IS_GTOLM_DROP - drops the indices with no local value from the output list 412d4bb536fSBarry Smith . n - number of global indices to map 413b9cd556bSLois Curfman McInnes - idx - global indices to map 414d4bb536fSBarry Smith 415d4bb536fSBarry Smith Output Parameters: 416b9cd556bSLois Curfman McInnes + nout - number of indices in output array (if type == IS_GTOLM_MASK then nout = n) 417b9cd556bSLois Curfman McInnes - idxout - local index of each global index, one must pass in an array long enough 418e182c471SBarry Smith to hold all the indices. You can call ISGlobalToLocalMappingApply() with 419e182c471SBarry Smith idxout == PETSC_NULL to determine the required length (returned in nout) 420e182c471SBarry Smith and then allocate the required space and call ISGlobalToLocalMappingApply() 421e182c471SBarry Smith a second time to set the values. 422d4bb536fSBarry Smith 423b9cd556bSLois Curfman McInnes Notes: 424b9cd556bSLois Curfman McInnes Either nout or idxout may be PETSC_NULL. idx and idxout may be identical. 425d4bb536fSBarry Smith 4260f5bd95cSBarry Smith This is not scalable in memory usage. Each processor requires O(Nglobal) size 4270f5bd95cSBarry Smith array to compute these. 4280f5bd95cSBarry Smith 429a997ad1aSLois Curfman McInnes Level: advanced 430a997ad1aSLois Curfman McInnes 431273d9f13SBarry Smith Concepts: mapping^global to local 432d4bb536fSBarry Smith 433d4bb536fSBarry Smith .seealso: ISLocalToGlobalMappingApply(), ISLocalToGlobalMappingCreate(), 434d4bb536fSBarry Smith ISLocalToGlobalMappingDestroy() 435d4bb536fSBarry Smith @*/ 4360c735eedSKris Buschelman PetscErrorCode PETSCVEC_DLLEXPORT ISGlobalToLocalMappingApply(ISLocalToGlobalMapping mapping,ISGlobalToLocalMappingType type, 43732dcc486SBarry Smith PetscInt n,const PetscInt idx[],PetscInt *nout,PetscInt idxout[]) 438d4bb536fSBarry Smith { 43932dcc486SBarry Smith PetscInt i,*globals,nf = 0,tmp,start,end; 4406849ba73SBarry Smith PetscErrorCode ierr; 441d4bb536fSBarry Smith 4423a40ed3dSBarry Smith PetscFunctionBegin; 443ad48de64SLisandro Dalcin PetscValidHeaderSpecific(mapping,IS_LTOGM_COOKIE,1); 444d4bb536fSBarry Smith if (!mapping->globals) { 445d4bb536fSBarry Smith ierr = ISGlobalToLocalMappingSetUp_Private(mapping);CHKERRQ(ierr); 446d4bb536fSBarry Smith } 447d4bb536fSBarry Smith globals = mapping->globals; 448d4bb536fSBarry Smith start = mapping->globalstart; 449d4bb536fSBarry Smith end = mapping->globalend; 450d4bb536fSBarry Smith 451d4bb536fSBarry Smith if (type == IS_GTOLM_MASK) { 452d4bb536fSBarry Smith if (idxout) { 453d4bb536fSBarry Smith for (i=0; i<n; i++) { 454d4bb536fSBarry Smith if (idx[i] < 0) idxout[i] = idx[i]; 455d4bb536fSBarry Smith else if (idx[i] < start) idxout[i] = -1; 456d4bb536fSBarry Smith else if (idx[i] > end) idxout[i] = -1; 457d4bb536fSBarry Smith else idxout[i] = globals[idx[i] - start]; 458d4bb536fSBarry Smith } 459d4bb536fSBarry Smith } 460d4bb536fSBarry Smith if (nout) *nout = n; 461d4bb536fSBarry Smith } else { 462d4bb536fSBarry Smith if (idxout) { 463d4bb536fSBarry Smith for (i=0; i<n; i++) { 464d4bb536fSBarry Smith if (idx[i] < 0) continue; 465d4bb536fSBarry Smith if (idx[i] < start) continue; 466d4bb536fSBarry Smith if (idx[i] > end) continue; 467d4bb536fSBarry Smith tmp = globals[idx[i] - start]; 468d4bb536fSBarry Smith if (tmp < 0) continue; 469d4bb536fSBarry Smith idxout[nf++] = tmp; 470d4bb536fSBarry Smith } 471d4bb536fSBarry Smith } else { 472d4bb536fSBarry Smith for (i=0; i<n; i++) { 473d4bb536fSBarry Smith if (idx[i] < 0) continue; 474d4bb536fSBarry Smith if (idx[i] < start) continue; 475d4bb536fSBarry Smith if (idx[i] > end) continue; 476d4bb536fSBarry Smith tmp = globals[idx[i] - start]; 477d4bb536fSBarry Smith if (tmp < 0) continue; 478d4bb536fSBarry Smith nf++; 479d4bb536fSBarry Smith } 480d4bb536fSBarry Smith } 481d4bb536fSBarry Smith if (nout) *nout = nf; 482d4bb536fSBarry Smith } 483d4bb536fSBarry Smith 4843a40ed3dSBarry Smith PetscFunctionReturn(0); 485d4bb536fSBarry Smith } 48690f02eecSBarry Smith 4874a2ae208SSatish Balay #undef __FUNCT__ 4884a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingGetInfo" 48989d82c54SBarry Smith /*@C 49089d82c54SBarry Smith ISLocalToGlobalMappingGetInfo - Gets the neighbor information for each processor and 49189d82c54SBarry Smith each index shared by more than one processor 49289d82c54SBarry Smith 49389d82c54SBarry Smith Collective on ISLocalToGlobalMapping 49489d82c54SBarry Smith 49589d82c54SBarry Smith Input Parameters: 49689d82c54SBarry Smith . mapping - the mapping from local to global indexing 49789d82c54SBarry Smith 49889d82c54SBarry Smith Output Parameter: 49989d82c54SBarry Smith + nproc - number of processors that are connected to this one 50089d82c54SBarry Smith . proc - neighboring processors 50107b52d57SBarry Smith . numproc - number of indices for each subdomain (processor) 50207b52d57SBarry Smith - indices - indices of local nodes shared with neighbor (sorted by global numbering) 50389d82c54SBarry Smith 50489d82c54SBarry Smith Level: advanced 50589d82c54SBarry Smith 506273d9f13SBarry Smith Concepts: mapping^local to global 50789d82c54SBarry Smith 5082cfcea29SBarry Smith Fortran Usage: 5092cfcea29SBarry Smith $ ISLocalToGlobalMpngGetInfoSize(ISLocalToGlobalMapping,PetscInt nproc,PetscInt numprocmax,ierr) followed by 5102cfcea29SBarry Smith $ ISLocalToGlobalMappingGetInfo(ISLocalToGlobalMapping,PetscInt nproc, PetscInt procs[nproc],PetscInt numprocs[nproc], 5112cfcea29SBarry Smith PetscInt indices[nproc][numprocmax],ierr) 5122cfcea29SBarry Smith There is no ISLocalToGlobalMappingRestoreInfo() in Fortran. You must make sure that procs[], numprocs[] and 5132cfcea29SBarry Smith indices[][] are large enough arrays, either by allocating them dynamically or defining static ones large enough. 5142cfcea29SBarry Smith 5152cfcea29SBarry Smith 51607b52d57SBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreateIS(), ISLocalToGlobalMappingCreate(), 51707b52d57SBarry Smith ISLocalToGlobalMappingRestoreInfo() 51889d82c54SBarry Smith @*/ 5190c735eedSKris Buschelman PetscErrorCode PETSCVEC_DLLEXPORT ISLocalToGlobalMappingGetInfo(ISLocalToGlobalMapping mapping,PetscInt *nproc,PetscInt *procs[],PetscInt *numprocs[],PetscInt **indices[]) 52089d82c54SBarry Smith { 5216849ba73SBarry Smith PetscErrorCode ierr; 52297f1f81fSBarry Smith PetscMPIInt size,rank,tag1,tag2,tag3,*len,*source,imdex; 52332dcc486SBarry Smith PetscInt i,n = mapping->n,Ng,ng,max = 0,*lindices = mapping->indices; 52432dcc486SBarry Smith PetscInt *nprocs,*owner,nsends,*sends,j,*starts,nmax,nrecvs,*recvs,proc; 52597f1f81fSBarry Smith PetscInt cnt,scale,*ownedsenders,*nownedsenders,rstart,nowned; 52632dcc486SBarry Smith PetscInt node,nownedm,nt,*sends2,nsends2,*starts2,*lens2,*dest,nrecvs2,*starts3,*recvs2,k,*bprocs,*tmp; 52732dcc486SBarry Smith PetscInt first_procs,first_numprocs,*first_indices; 52889d82c54SBarry Smith MPI_Request *recv_waits,*send_waits; 52930dcb7c9SBarry Smith MPI_Status recv_status,*send_status,*recv_statuses; 5307adad957SLisandro Dalcin MPI_Comm comm = ((PetscObject)mapping)->comm; 53107b52d57SBarry Smith PetscTruth debug = PETSC_FALSE; 53289d82c54SBarry Smith 53389d82c54SBarry Smith PetscFunctionBegin; 534ad48de64SLisandro Dalcin PetscValidHeaderSpecific(mapping,IS_LTOGM_COOKIE,1); 53524cf384cSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 53624cf384cSBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 53724cf384cSBarry Smith if (size == 1) { 53824cf384cSBarry Smith *nproc = 0; 53924cf384cSBarry Smith *procs = PETSC_NULL; 54032dcc486SBarry Smith ierr = PetscMalloc(sizeof(PetscInt),numprocs);CHKERRQ(ierr); 5411e2105dcSBarry Smith (*numprocs)[0] = 0; 54232dcc486SBarry Smith ierr = PetscMalloc(sizeof(PetscInt*),indices);CHKERRQ(ierr); 5431e2105dcSBarry Smith (*indices)[0] = PETSC_NULL; 54424cf384cSBarry Smith PetscFunctionReturn(0); 54524cf384cSBarry Smith } 54624cf384cSBarry Smith 547b0a32e0cSBarry Smith ierr = PetscOptionsHasName(PETSC_NULL,"-islocaltoglobalmappinggetinfo_debug",&debug);CHKERRQ(ierr); 54807b52d57SBarry Smith 5493677ff5aSBarry Smith /* 5503677ff5aSBarry Smith Notes on ISLocalToGlobalMappingGetInfo 5513677ff5aSBarry Smith 5523677ff5aSBarry Smith globally owned node - the nodes that have been assigned to this processor in global 5533677ff5aSBarry Smith numbering, just for this routine. 5543677ff5aSBarry Smith 5553677ff5aSBarry Smith nontrivial globally owned node - node assigned to this processor that is on a subdomain 5563677ff5aSBarry Smith boundary (i.e. is has more than one local owner) 5573677ff5aSBarry Smith 5583677ff5aSBarry Smith locally owned node - node that exists on this processors subdomain 5593677ff5aSBarry Smith 5603677ff5aSBarry Smith nontrivial locally owned node - node that is not in the interior (i.e. has more than one 5613677ff5aSBarry Smith local subdomain 5623677ff5aSBarry Smith */ 56324cf384cSBarry Smith ierr = PetscObjectGetNewTag((PetscObject)mapping,&tag1);CHKERRQ(ierr); 56424cf384cSBarry Smith ierr = PetscObjectGetNewTag((PetscObject)mapping,&tag2);CHKERRQ(ierr); 56524cf384cSBarry Smith ierr = PetscObjectGetNewTag((PetscObject)mapping,&tag3);CHKERRQ(ierr); 56689d82c54SBarry Smith 56789d82c54SBarry Smith for (i=0; i<n; i++) { 56889d82c54SBarry Smith if (lindices[i] > max) max = lindices[i]; 56989d82c54SBarry Smith } 57032dcc486SBarry Smith ierr = MPI_Allreduce(&max,&Ng,1,MPIU_INT,MPI_MAX,comm);CHKERRQ(ierr); 57178058e43SBarry Smith Ng++; 57289d82c54SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 57389d82c54SBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 574bc8ff85bSBarry Smith scale = Ng/size + 1; 575a2e34c3dSBarry Smith ng = scale; if (rank == size-1) ng = Ng - scale*(size-1); ng = PetscMax(1,ng); 576caba0dd0SBarry Smith rstart = scale*rank; 57789d82c54SBarry Smith 57889d82c54SBarry Smith /* determine ownership ranges of global indices */ 5797c334f02SBarry Smith ierr = PetscMalloc(2*size*sizeof(PetscInt),&nprocs);CHKERRQ(ierr); 58032dcc486SBarry Smith ierr = PetscMemzero(nprocs,2*size*sizeof(PetscInt));CHKERRQ(ierr); 58189d82c54SBarry Smith 58289d82c54SBarry Smith /* determine owners of each local node */ 5837c334f02SBarry Smith ierr = PetscMalloc(n*sizeof(PetscInt),&owner);CHKERRQ(ierr); 58489d82c54SBarry Smith for (i=0; i<n; i++) { 5853677ff5aSBarry Smith proc = lindices[i]/scale; /* processor that globally owns this index */ 58627c402fcSBarry Smith nprocs[2*proc+1] = 1; /* processor globally owns at least one of ours */ 5873677ff5aSBarry Smith owner[i] = proc; 58827c402fcSBarry Smith nprocs[2*proc]++; /* count of how many that processor globally owns of ours */ 58989d82c54SBarry Smith } 59027c402fcSBarry Smith nsends = 0; for (i=0; i<size; i++) nsends += nprocs[2*i+1]; 5911e2582c4SBarry Smith ierr = PetscInfo1(mapping,"Number of global owners for my local data %d\n",nsends);CHKERRQ(ierr); 59289d82c54SBarry Smith 59389d82c54SBarry Smith /* inform other processors of number of messages and max length*/ 59427c402fcSBarry Smith ierr = PetscMaxSum(comm,nprocs,&nmax,&nrecvs);CHKERRQ(ierr); 5951e2582c4SBarry Smith ierr = PetscInfo1(mapping,"Number of local owners for my global data %d\n",nrecvs);CHKERRQ(ierr); 59689d82c54SBarry Smith 59789d82c54SBarry Smith /* post receives for owned rows */ 59832dcc486SBarry Smith ierr = PetscMalloc((2*nrecvs+1)*(nmax+1)*sizeof(PetscInt),&recvs);CHKERRQ(ierr); 599b0a32e0cSBarry Smith ierr = PetscMalloc((nrecvs+1)*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr); 60089d82c54SBarry Smith for (i=0; i<nrecvs; i++) { 60132dcc486SBarry Smith ierr = MPI_Irecv(recvs+2*nmax*i,2*nmax,MPIU_INT,MPI_ANY_SOURCE,tag1,comm,recv_waits+i);CHKERRQ(ierr); 60289d82c54SBarry Smith } 60389d82c54SBarry Smith 60489d82c54SBarry Smith /* pack messages containing lists of local nodes to owners */ 60532dcc486SBarry Smith ierr = PetscMalloc((2*n+1)*sizeof(PetscInt),&sends);CHKERRQ(ierr); 60632dcc486SBarry Smith ierr = PetscMalloc((size+1)*sizeof(PetscInt),&starts);CHKERRQ(ierr); 60789d82c54SBarry Smith starts[0] = 0; 60827c402fcSBarry Smith for (i=1; i<size; i++) { starts[i] = starts[i-1] + 2*nprocs[2*i-2];} 60989d82c54SBarry Smith for (i=0; i<n; i++) { 61089d82c54SBarry Smith sends[starts[owner[i]]++] = lindices[i]; 61130dcb7c9SBarry Smith sends[starts[owner[i]]++] = i; 61289d82c54SBarry Smith } 61389d82c54SBarry Smith ierr = PetscFree(owner);CHKERRQ(ierr); 61489d82c54SBarry Smith starts[0] = 0; 61527c402fcSBarry Smith for (i=1; i<size; i++) { starts[i] = starts[i-1] + 2*nprocs[2*i-2];} 61689d82c54SBarry Smith 61789d82c54SBarry Smith /* send the messages */ 618b0a32e0cSBarry Smith ierr = PetscMalloc((nsends+1)*sizeof(MPI_Request),&send_waits);CHKERRQ(ierr); 61932dcc486SBarry Smith ierr = PetscMalloc((nsends+1)*sizeof(PetscInt),&dest);CHKERRQ(ierr); 62089d82c54SBarry Smith cnt = 0; 62189d82c54SBarry Smith for (i=0; i<size; i++) { 62227c402fcSBarry Smith if (nprocs[2*i]) { 62332dcc486SBarry Smith ierr = MPI_Isend(sends+starts[i],2*nprocs[2*i],MPIU_INT,i,tag1,comm,send_waits+cnt);CHKERRQ(ierr); 62430dcb7c9SBarry Smith dest[cnt] = i; 62589d82c54SBarry Smith cnt++; 62689d82c54SBarry Smith } 62789d82c54SBarry Smith } 62889d82c54SBarry Smith ierr = PetscFree(starts);CHKERRQ(ierr); 62989d82c54SBarry Smith 63089d82c54SBarry Smith /* wait on receives */ 63197f1f81fSBarry Smith ierr = PetscMalloc((nrecvs+1)*sizeof(PetscMPIInt),&source);CHKERRQ(ierr); 63297f1f81fSBarry Smith ierr = PetscMalloc((nrecvs+1)*sizeof(PetscMPIInt),&len);CHKERRQ(ierr); 63389d82c54SBarry Smith cnt = nrecvs; 63432dcc486SBarry Smith ierr = PetscMalloc((ng+1)*sizeof(PetscInt),&nownedsenders);CHKERRQ(ierr); 63532dcc486SBarry Smith ierr = PetscMemzero(nownedsenders,ng*sizeof(PetscInt));CHKERRQ(ierr); 63689d82c54SBarry Smith while (cnt) { 63789d82c54SBarry Smith ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr); 63889d82c54SBarry Smith /* unpack receives into our local space */ 63932dcc486SBarry Smith ierr = MPI_Get_count(&recv_status,MPIU_INT,&len[imdex]);CHKERRQ(ierr); 64089d82c54SBarry Smith source[imdex] = recv_status.MPI_SOURCE; 64130dcb7c9SBarry Smith len[imdex] = len[imdex]/2; 642caba0dd0SBarry Smith /* count how many local owners for each of my global owned indices */ 64330dcb7c9SBarry Smith for (i=0; i<len[imdex]; i++) nownedsenders[recvs[2*imdex*nmax+2*i]-rstart]++; 64489d82c54SBarry Smith cnt--; 64589d82c54SBarry Smith } 64689d82c54SBarry Smith ierr = PetscFree(recv_waits);CHKERRQ(ierr); 64789d82c54SBarry Smith 64830dcb7c9SBarry Smith /* count how many globally owned indices are on an edge multiplied by how many processors own them. */ 649bc8ff85bSBarry Smith nowned = 0; 650bc8ff85bSBarry Smith nownedm = 0; 651bc8ff85bSBarry Smith for (i=0; i<ng; i++) { 652bc8ff85bSBarry Smith if (nownedsenders[i] > 1) {nownedm += nownedsenders[i]; nowned++;} 653bc8ff85bSBarry Smith } 654bc8ff85bSBarry Smith 655bc8ff85bSBarry Smith /* create single array to contain rank of all local owners of each globally owned index */ 65632dcc486SBarry Smith ierr = PetscMalloc((nownedm+1)*sizeof(PetscInt),&ownedsenders);CHKERRQ(ierr); 65732dcc486SBarry Smith ierr = PetscMalloc((ng+1)*sizeof(PetscInt),&starts);CHKERRQ(ierr); 658bc8ff85bSBarry Smith starts[0] = 0; 659bc8ff85bSBarry Smith for (i=1; i<ng; i++) { 660bc8ff85bSBarry Smith if (nownedsenders[i-1] > 1) starts[i] = starts[i-1] + nownedsenders[i-1]; 661bc8ff85bSBarry Smith else starts[i] = starts[i-1]; 662bc8ff85bSBarry Smith } 663bc8ff85bSBarry Smith 66430dcb7c9SBarry Smith /* for each nontrival globally owned node list all arriving processors */ 665bc8ff85bSBarry Smith for (i=0; i<nrecvs; i++) { 666bc8ff85bSBarry Smith for (j=0; j<len[i]; j++) { 66730dcb7c9SBarry Smith node = recvs[2*i*nmax+2*j]-rstart; 668bc8ff85bSBarry Smith if (nownedsenders[node] > 1) { 669bc8ff85bSBarry Smith ownedsenders[starts[node]++] = source[i]; 670bc8ff85bSBarry Smith } 671bc8ff85bSBarry Smith } 672bc8ff85bSBarry Smith } 673bc8ff85bSBarry Smith 67407b52d57SBarry Smith if (debug) { /* ----------------------------------- */ 67530dcb7c9SBarry Smith starts[0] = 0; 67630dcb7c9SBarry Smith for (i=1; i<ng; i++) { 67730dcb7c9SBarry Smith if (nownedsenders[i-1] > 1) starts[i] = starts[i-1] + nownedsenders[i-1]; 67830dcb7c9SBarry Smith else starts[i] = starts[i-1]; 67930dcb7c9SBarry Smith } 68030dcb7c9SBarry Smith for (i=0; i<ng; i++) { 68130dcb7c9SBarry Smith if (nownedsenders[i] > 1) { 68230dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"[%d] global node %d local owner processors: ",rank,i+rstart);CHKERRQ(ierr); 68330dcb7c9SBarry Smith for (j=0; j<nownedsenders[i]; j++) { 68430dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"%d ",ownedsenders[starts[i]+j]);CHKERRQ(ierr); 68530dcb7c9SBarry Smith } 68630dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"\n");CHKERRQ(ierr); 68730dcb7c9SBarry Smith } 68830dcb7c9SBarry Smith } 68930dcb7c9SBarry Smith ierr = PetscSynchronizedFlush(comm);CHKERRQ(ierr); 69007b52d57SBarry Smith }/* ----------------------------------- */ 69130dcb7c9SBarry Smith 6923677ff5aSBarry Smith /* wait on original sends */ 6933a96401aSBarry Smith if (nsends) { 694b0a32e0cSBarry Smith ierr = PetscMalloc(nsends*sizeof(MPI_Status),&send_status);CHKERRQ(ierr); 6953a96401aSBarry Smith ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr); 6963a96401aSBarry Smith ierr = PetscFree(send_status);CHKERRQ(ierr); 6973a96401aSBarry Smith } 69889d82c54SBarry Smith ierr = PetscFree(send_waits);CHKERRQ(ierr); 6993a96401aSBarry Smith ierr = PetscFree(sends);CHKERRQ(ierr); 7003677ff5aSBarry Smith ierr = PetscFree(nprocs);CHKERRQ(ierr); 7013677ff5aSBarry Smith 7023677ff5aSBarry Smith /* pack messages to send back to local owners */ 70330dcb7c9SBarry Smith starts[0] = 0; 70430dcb7c9SBarry Smith for (i=1; i<ng; i++) { 70530dcb7c9SBarry Smith if (nownedsenders[i-1] > 1) starts[i] = starts[i-1] + nownedsenders[i-1]; 70630dcb7c9SBarry Smith else starts[i] = starts[i-1]; 70730dcb7c9SBarry Smith } 70830dcb7c9SBarry Smith nsends2 = nrecvs; 70932dcc486SBarry Smith ierr = PetscMalloc((nsends2+1)*sizeof(PetscInt),&nprocs);CHKERRQ(ierr); /* length of each message */ 71030dcb7c9SBarry Smith for (i=0; i<nrecvs; i++) { 71130dcb7c9SBarry Smith nprocs[i] = 1; 71230dcb7c9SBarry Smith for (j=0; j<len[i]; j++) { 71330dcb7c9SBarry Smith node = recvs[2*i*nmax+2*j]-rstart; 71430dcb7c9SBarry Smith if (nownedsenders[node] > 1) { 71530dcb7c9SBarry Smith nprocs[i] += 2 + nownedsenders[node]; 71630dcb7c9SBarry Smith } 71730dcb7c9SBarry Smith } 71830dcb7c9SBarry Smith } 71930dcb7c9SBarry Smith nt = 0; for (i=0; i<nsends2; i++) nt += nprocs[i]; 72032dcc486SBarry Smith ierr = PetscMalloc((nt+1)*sizeof(PetscInt),&sends2);CHKERRQ(ierr); 72132dcc486SBarry Smith ierr = PetscMalloc((nsends2+1)*sizeof(PetscInt),&starts2);CHKERRQ(ierr); 72230dcb7c9SBarry Smith starts2[0] = 0; for (i=1; i<nsends2; i++) starts2[i] = starts2[i-1] + nprocs[i-1]; 72330dcb7c9SBarry Smith /* 72430dcb7c9SBarry Smith Each message is 1 + nprocs[i] long, and consists of 72530dcb7c9SBarry Smith (0) the number of nodes being sent back 72630dcb7c9SBarry Smith (1) the local node number, 72730dcb7c9SBarry Smith (2) the number of processors sharing it, 72830dcb7c9SBarry Smith (3) the processors sharing it 72930dcb7c9SBarry Smith */ 73030dcb7c9SBarry Smith for (i=0; i<nsends2; i++) { 73130dcb7c9SBarry Smith cnt = 1; 73230dcb7c9SBarry Smith sends2[starts2[i]] = 0; 73330dcb7c9SBarry Smith for (j=0; j<len[i]; j++) { 73430dcb7c9SBarry Smith node = recvs[2*i*nmax+2*j]-rstart; 73530dcb7c9SBarry Smith if (nownedsenders[node] > 1) { 73630dcb7c9SBarry Smith sends2[starts2[i]]++; 73730dcb7c9SBarry Smith sends2[starts2[i]+cnt++] = recvs[2*i*nmax+2*j+1]; 73830dcb7c9SBarry Smith sends2[starts2[i]+cnt++] = nownedsenders[node]; 73932dcc486SBarry Smith ierr = PetscMemcpy(&sends2[starts2[i]+cnt],&ownedsenders[starts[node]],nownedsenders[node]*sizeof(PetscInt));CHKERRQ(ierr); 74030dcb7c9SBarry Smith cnt += nownedsenders[node]; 74130dcb7c9SBarry Smith } 74230dcb7c9SBarry Smith } 74330dcb7c9SBarry Smith } 74430dcb7c9SBarry Smith 74530dcb7c9SBarry Smith /* receive the message lengths */ 74630dcb7c9SBarry Smith nrecvs2 = nsends; 74732dcc486SBarry Smith ierr = PetscMalloc((nrecvs2+1)*sizeof(PetscInt),&lens2);CHKERRQ(ierr); 74832dcc486SBarry Smith ierr = PetscMalloc((nrecvs2+1)*sizeof(PetscInt),&starts3);CHKERRQ(ierr); 749d44834fbSBarry Smith ierr = PetscMalloc((nrecvs2+1)*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr); 75030dcb7c9SBarry Smith for (i=0; i<nrecvs2; i++) { 751d44834fbSBarry Smith ierr = MPI_Irecv(&lens2[i],1,MPIU_INT,dest[i],tag2,comm,recv_waits+i);CHKERRQ(ierr); 75230dcb7c9SBarry Smith } 753d44834fbSBarry Smith 7548a8e0b3aSBarry Smith /* send the message lengths */ 7558a8e0b3aSBarry Smith for (i=0; i<nsends2; i++) { 7568a8e0b3aSBarry Smith ierr = MPI_Send(&nprocs[i],1,MPIU_INT,source[i],tag2,comm);CHKERRQ(ierr); 7578a8e0b3aSBarry Smith } 7588a8e0b3aSBarry Smith 759d44834fbSBarry Smith /* wait on receives of lens */ 7600c468ba9SBarry Smith if (nrecvs2) { 7610c468ba9SBarry Smith ierr = PetscMalloc(nrecvs2*sizeof(MPI_Status),&recv_statuses);CHKERRQ(ierr); 762d44834fbSBarry Smith ierr = MPI_Waitall(nrecvs2,recv_waits,recv_statuses);CHKERRQ(ierr); 763d44834fbSBarry Smith ierr = PetscFree(recv_statuses);CHKERRQ(ierr); 7640c468ba9SBarry Smith } 765d44834fbSBarry Smith ierr = PetscFree(recv_waits); 766d44834fbSBarry Smith 76730dcb7c9SBarry Smith starts3[0] = 0; 768d44834fbSBarry Smith nt = 0; 76930dcb7c9SBarry Smith for (i=0; i<nrecvs2-1; i++) { 77030dcb7c9SBarry Smith starts3[i+1] = starts3[i] + lens2[i]; 771d44834fbSBarry Smith nt += lens2[i]; 77230dcb7c9SBarry Smith } 773d44834fbSBarry Smith nt += lens2[nrecvs2-1]; 774d44834fbSBarry Smith 77532dcc486SBarry Smith ierr = PetscMalloc((nt+1)*sizeof(PetscInt),&recvs2);CHKERRQ(ierr); 776b0a32e0cSBarry Smith ierr = PetscMalloc((nrecvs2+1)*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr); 77752b72c4aSBarry Smith for (i=0; i<nrecvs2; i++) { 77832dcc486SBarry Smith ierr = MPI_Irecv(recvs2+starts3[i],lens2[i],MPIU_INT,dest[i],tag3,comm,recv_waits+i);CHKERRQ(ierr); 77930dcb7c9SBarry Smith } 78030dcb7c9SBarry Smith 78130dcb7c9SBarry Smith /* send the messages */ 782b0a32e0cSBarry Smith ierr = PetscMalloc((nsends2+1)*sizeof(MPI_Request),&send_waits);CHKERRQ(ierr); 78330dcb7c9SBarry Smith for (i=0; i<nsends2; i++) { 78432dcc486SBarry Smith ierr = MPI_Isend(sends2+starts2[i],nprocs[i],MPIU_INT,source[i],tag3,comm,send_waits+i);CHKERRQ(ierr); 78530dcb7c9SBarry Smith } 78630dcb7c9SBarry Smith 78730dcb7c9SBarry Smith /* wait on receives */ 7880c468ba9SBarry Smith if (nrecvs2) { 7890c468ba9SBarry Smith ierr = PetscMalloc(nrecvs2*sizeof(MPI_Status),&recv_statuses);CHKERRQ(ierr); 79030dcb7c9SBarry Smith ierr = MPI_Waitall(nrecvs2,recv_waits,recv_statuses);CHKERRQ(ierr); 79130dcb7c9SBarry Smith ierr = PetscFree(recv_statuses);CHKERRQ(ierr); 7920c468ba9SBarry Smith } 79330dcb7c9SBarry Smith ierr = PetscFree(recv_waits);CHKERRQ(ierr); 79430dcb7c9SBarry Smith ierr = PetscFree(nprocs);CHKERRQ(ierr); 79530dcb7c9SBarry Smith 79607b52d57SBarry Smith if (debug) { /* ----------------------------------- */ 79730dcb7c9SBarry Smith cnt = 0; 79830dcb7c9SBarry Smith for (i=0; i<nrecvs2; i++) { 79930dcb7c9SBarry Smith nt = recvs2[cnt++]; 80030dcb7c9SBarry Smith for (j=0; j<nt; j++) { 80130dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"[%d] local node %d number of subdomains %d: ",rank,recvs2[cnt],recvs2[cnt+1]);CHKERRQ(ierr); 80230dcb7c9SBarry Smith for (k=0; k<recvs2[cnt+1]; k++) { 80330dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"%d ",recvs2[cnt+2+k]);CHKERRQ(ierr); 80430dcb7c9SBarry Smith } 80530dcb7c9SBarry Smith cnt += 2 + recvs2[cnt+1]; 80630dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"\n");CHKERRQ(ierr); 80730dcb7c9SBarry Smith } 80830dcb7c9SBarry Smith } 80930dcb7c9SBarry Smith ierr = PetscSynchronizedFlush(comm);CHKERRQ(ierr); 81007b52d57SBarry Smith } /* ----------------------------------- */ 81130dcb7c9SBarry Smith 81230dcb7c9SBarry Smith /* count number subdomains for each local node */ 81332dcc486SBarry Smith ierr = PetscMalloc(size*sizeof(PetscInt),&nprocs);CHKERRQ(ierr); 81432dcc486SBarry Smith ierr = PetscMemzero(nprocs,size*sizeof(PetscInt));CHKERRQ(ierr); 81530dcb7c9SBarry Smith cnt = 0; 81630dcb7c9SBarry Smith for (i=0; i<nrecvs2; i++) { 81730dcb7c9SBarry Smith nt = recvs2[cnt++]; 81830dcb7c9SBarry Smith for (j=0; j<nt; j++) { 81930dcb7c9SBarry Smith for (k=0; k<recvs2[cnt+1]; k++) { 82030dcb7c9SBarry Smith nprocs[recvs2[cnt+2+k]]++; 82130dcb7c9SBarry Smith } 82230dcb7c9SBarry Smith cnt += 2 + recvs2[cnt+1]; 82330dcb7c9SBarry Smith } 82430dcb7c9SBarry Smith } 82530dcb7c9SBarry Smith nt = 0; for (i=0; i<size; i++) nt += (nprocs[i] > 0); 82630dcb7c9SBarry Smith *nproc = nt; 82732dcc486SBarry Smith ierr = PetscMalloc((nt+1)*sizeof(PetscInt),procs);CHKERRQ(ierr); 82832dcc486SBarry Smith ierr = PetscMalloc((nt+1)*sizeof(PetscInt),numprocs);CHKERRQ(ierr); 82932dcc486SBarry Smith ierr = PetscMalloc((nt+1)*sizeof(PetscInt*),indices);CHKERRQ(ierr); 83032dcc486SBarry Smith ierr = PetscMalloc(size*sizeof(PetscInt),&bprocs);CHKERRQ(ierr); 83130dcb7c9SBarry Smith cnt = 0; 83230dcb7c9SBarry Smith for (i=0; i<size; i++) { 83330dcb7c9SBarry Smith if (nprocs[i] > 0) { 83430dcb7c9SBarry Smith bprocs[i] = cnt; 83530dcb7c9SBarry Smith (*procs)[cnt] = i; 83630dcb7c9SBarry Smith (*numprocs)[cnt] = nprocs[i]; 83732dcc486SBarry Smith ierr = PetscMalloc(nprocs[i]*sizeof(PetscInt),&(*indices)[cnt]);CHKERRQ(ierr); 83830dcb7c9SBarry Smith cnt++; 83930dcb7c9SBarry Smith } 84030dcb7c9SBarry Smith } 84130dcb7c9SBarry Smith 84230dcb7c9SBarry Smith /* make the list of subdomains for each nontrivial local node */ 84332dcc486SBarry Smith ierr = PetscMemzero(*numprocs,nt*sizeof(PetscInt));CHKERRQ(ierr); 84430dcb7c9SBarry Smith cnt = 0; 84530dcb7c9SBarry Smith for (i=0; i<nrecvs2; i++) { 84630dcb7c9SBarry Smith nt = recvs2[cnt++]; 84730dcb7c9SBarry Smith for (j=0; j<nt; j++) { 84830dcb7c9SBarry Smith for (k=0; k<recvs2[cnt+1]; k++) { 84930dcb7c9SBarry Smith (*indices)[bprocs[recvs2[cnt+2+k]]][(*numprocs)[bprocs[recvs2[cnt+2+k]]]++] = recvs2[cnt]; 85030dcb7c9SBarry Smith } 85130dcb7c9SBarry Smith cnt += 2 + recvs2[cnt+1]; 85230dcb7c9SBarry Smith } 85330dcb7c9SBarry Smith } 85430dcb7c9SBarry Smith ierr = PetscFree(bprocs);CHKERRQ(ierr); 85507b52d57SBarry Smith ierr = PetscFree(recvs2);CHKERRQ(ierr); 85630dcb7c9SBarry Smith 85707b52d57SBarry Smith /* sort the node indexing by their global numbers */ 85807b52d57SBarry Smith nt = *nproc; 85907b52d57SBarry Smith for (i=0; i<nt; i++) { 86032dcc486SBarry Smith ierr = PetscMalloc(((*numprocs)[i])*sizeof(PetscInt),&tmp);CHKERRQ(ierr); 86107b52d57SBarry Smith for (j=0; j<(*numprocs)[i]; j++) { 86207b52d57SBarry Smith tmp[j] = lindices[(*indices)[i][j]]; 86307b52d57SBarry Smith } 86407b52d57SBarry Smith ierr = PetscSortIntWithArray((*numprocs)[i],tmp,(*indices)[i]);CHKERRQ(ierr); 86507b52d57SBarry Smith ierr = PetscFree(tmp);CHKERRQ(ierr); 86607b52d57SBarry Smith } 86707b52d57SBarry Smith 86807b52d57SBarry Smith if (debug) { /* ----------------------------------- */ 86930dcb7c9SBarry Smith nt = *nproc; 87030dcb7c9SBarry Smith for (i=0; i<nt; i++) { 87130dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"[%d] subdomain %d number of indices %d: ",rank,(*procs)[i],(*numprocs)[i]);CHKERRQ(ierr); 87230dcb7c9SBarry Smith for (j=0; j<(*numprocs)[i]; j++) { 87330dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"%d ",(*indices)[i][j]);CHKERRQ(ierr); 87430dcb7c9SBarry Smith } 87530dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"\n");CHKERRQ(ierr); 87630dcb7c9SBarry Smith } 87730dcb7c9SBarry Smith ierr = PetscSynchronizedFlush(comm);CHKERRQ(ierr); 87807b52d57SBarry Smith } /* ----------------------------------- */ 87930dcb7c9SBarry Smith 88030dcb7c9SBarry Smith /* wait on sends */ 88130dcb7c9SBarry Smith if (nsends2) { 882b0a32e0cSBarry Smith ierr = PetscMalloc(nsends2*sizeof(MPI_Status),&send_status);CHKERRQ(ierr); 88330dcb7c9SBarry Smith ierr = MPI_Waitall(nsends2,send_waits,send_status);CHKERRQ(ierr); 88430dcb7c9SBarry Smith ierr = PetscFree(send_status);CHKERRQ(ierr); 88530dcb7c9SBarry Smith } 88630dcb7c9SBarry Smith 88730dcb7c9SBarry Smith ierr = PetscFree(starts3);CHKERRQ(ierr); 88830dcb7c9SBarry Smith ierr = PetscFree(dest);CHKERRQ(ierr); 88930dcb7c9SBarry Smith ierr = PetscFree(send_waits);CHKERRQ(ierr); 8903677ff5aSBarry Smith 891bc8ff85bSBarry Smith ierr = PetscFree(nownedsenders);CHKERRQ(ierr); 892bc8ff85bSBarry Smith ierr = PetscFree(ownedsenders);CHKERRQ(ierr); 893bc8ff85bSBarry Smith ierr = PetscFree(starts);CHKERRQ(ierr); 89430dcb7c9SBarry Smith ierr = PetscFree(starts2);CHKERRQ(ierr); 89530dcb7c9SBarry Smith ierr = PetscFree(lens2);CHKERRQ(ierr); 89689d82c54SBarry Smith 89789d82c54SBarry Smith ierr = PetscFree(source);CHKERRQ(ierr); 89897f1f81fSBarry Smith ierr = PetscFree(len);CHKERRQ(ierr); 89989d82c54SBarry Smith ierr = PetscFree(recvs);CHKERRQ(ierr); 9003a96401aSBarry Smith ierr = PetscFree(nprocs);CHKERRQ(ierr); 90130dcb7c9SBarry Smith ierr = PetscFree(sends2);CHKERRQ(ierr); 90224cf384cSBarry Smith 90324cf384cSBarry Smith /* put the information about myself as the first entry in the list */ 90424cf384cSBarry Smith first_procs = (*procs)[0]; 90524cf384cSBarry Smith first_numprocs = (*numprocs)[0]; 90624cf384cSBarry Smith first_indices = (*indices)[0]; 90724cf384cSBarry Smith for (i=0; i<*nproc; i++) { 90824cf384cSBarry Smith if ((*procs)[i] == rank) { 90924cf384cSBarry Smith (*procs)[0] = (*procs)[i]; 91024cf384cSBarry Smith (*numprocs)[0] = (*numprocs)[i]; 91124cf384cSBarry Smith (*indices)[0] = (*indices)[i]; 91224cf384cSBarry Smith (*procs)[i] = first_procs; 91324cf384cSBarry Smith (*numprocs)[i] = first_numprocs; 91424cf384cSBarry Smith (*indices)[i] = first_indices; 91524cf384cSBarry Smith break; 91624cf384cSBarry Smith } 91724cf384cSBarry Smith } 91889d82c54SBarry Smith PetscFunctionReturn(0); 91989d82c54SBarry Smith } 92089d82c54SBarry Smith 9214a2ae208SSatish Balay #undef __FUNCT__ 9224a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingRestoreInfo" 92307b52d57SBarry Smith /*@C 92407b52d57SBarry Smith ISLocalToGlobalMappingRestoreInfo - Frees the memory allocated by ISLocalToGlobalMappingGetInfo() 92589d82c54SBarry Smith 92607b52d57SBarry Smith Collective on ISLocalToGlobalMapping 92707b52d57SBarry Smith 92807b52d57SBarry Smith Input Parameters: 92907b52d57SBarry Smith . mapping - the mapping from local to global indexing 93007b52d57SBarry Smith 93107b52d57SBarry Smith Output Parameter: 93207b52d57SBarry Smith + nproc - number of processors that are connected to this one 93307b52d57SBarry Smith . proc - neighboring processors 93407b52d57SBarry Smith . numproc - number of indices for each processor 93507b52d57SBarry Smith - indices - indices of local nodes shared with neighbor (sorted by global numbering) 93607b52d57SBarry Smith 93707b52d57SBarry Smith Level: advanced 93807b52d57SBarry Smith 93907b52d57SBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreateIS(), ISLocalToGlobalMappingCreate(), 94007b52d57SBarry Smith ISLocalToGlobalMappingGetInfo() 94107b52d57SBarry Smith @*/ 9420c735eedSKris Buschelman PetscErrorCode PETSCVEC_DLLEXPORT ISLocalToGlobalMappingRestoreInfo(ISLocalToGlobalMapping mapping,PetscInt *nproc,PetscInt *procs[],PetscInt *numprocs[],PetscInt **indices[]) 94307b52d57SBarry Smith { 9446849ba73SBarry Smith PetscErrorCode ierr; 94532dcc486SBarry Smith PetscInt i; 94607b52d57SBarry Smith 94707b52d57SBarry Smith PetscFunctionBegin; 94805b42c5fSBarry Smith ierr = PetscFree(*procs);CHKERRQ(ierr); 94905b42c5fSBarry Smith ierr = PetscFree(*numprocs);CHKERRQ(ierr); 95000ff320aSBarry Smith if (*indices) { 95105b42c5fSBarry Smith ierr = PetscFree((*indices)[0]);CHKERRQ(ierr); 95200ff320aSBarry Smith for (i=1; i<*nproc; i++) { 95305b42c5fSBarry Smith ierr = PetscFree((*indices)[i]);CHKERRQ(ierr); 95407b52d57SBarry Smith } 95507b52d57SBarry Smith ierr = PetscFree(*indices);CHKERRQ(ierr); 95624cf384cSBarry Smith } 95707b52d57SBarry Smith PetscFunctionReturn(0); 95807b52d57SBarry Smith } 959