12362add9SBarry Smith 2b45d2f2cSJed Brown #include <petsc-private/isimpl.h> /*I "petscis.h" I*/ 32362add9SBarry Smith 47087cfbeSBarry Smith PetscClassId IS_LTOGM_CLASSID; 58e58c17dSMatthew Knepley 64a2ae208SSatish Balay #undef __FUNCT__ 74a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingGetSize" 83b9aefa3SBarry Smith /*@C 93b9aefa3SBarry Smith ISLocalToGlobalMappingGetSize - Gets the local size of a local to global mapping. 103b9aefa3SBarry Smith 113b9aefa3SBarry Smith Not Collective 123b9aefa3SBarry Smith 133b9aefa3SBarry Smith Input Parameter: 143b9aefa3SBarry Smith . ltog - local to global mapping 153b9aefa3SBarry Smith 163b9aefa3SBarry Smith Output Parameter: 173b9aefa3SBarry Smith . n - the number of entries in the local mapping 183b9aefa3SBarry Smith 193b9aefa3SBarry Smith Level: advanced 203b9aefa3SBarry Smith 21273d9f13SBarry Smith Concepts: mapping^local to global 223b9aefa3SBarry Smith 233b9aefa3SBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreate() 243b9aefa3SBarry Smith @*/ 257087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingGetSize(ISLocalToGlobalMapping mapping,PetscInt *n) 263b9aefa3SBarry Smith { 273b9aefa3SBarry Smith PetscFunctionBegin; 280700a824SBarry Smith PetscValidHeaderSpecific(mapping,IS_LTOGM_CLASSID,1); 294482741eSBarry Smith PetscValidIntPointer(n,2); 303b9aefa3SBarry Smith *n = mapping->n; 313b9aefa3SBarry Smith PetscFunctionReturn(0); 323b9aefa3SBarry Smith } 333b9aefa3SBarry Smith 344a2ae208SSatish Balay #undef __FUNCT__ 354a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingView" 365a5d4f66SBarry Smith /*@C 375a5d4f66SBarry Smith ISLocalToGlobalMappingView - View a local to global mapping 385a5d4f66SBarry Smith 39b9cd556bSLois Curfman McInnes Not Collective 40b9cd556bSLois Curfman McInnes 415a5d4f66SBarry Smith Input Parameters: 423b9aefa3SBarry Smith + ltog - local to global mapping 433b9aefa3SBarry Smith - viewer - viewer 445a5d4f66SBarry Smith 45a997ad1aSLois Curfman McInnes Level: advanced 46a997ad1aSLois Curfman McInnes 47273d9f13SBarry Smith Concepts: mapping^local to global 485a5d4f66SBarry Smith 495a5d4f66SBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreate() 505a5d4f66SBarry Smith @*/ 517087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingView(ISLocalToGlobalMapping mapping,PetscViewer viewer) 525a5d4f66SBarry Smith { 5332dcc486SBarry Smith PetscInt i; 5432dcc486SBarry Smith PetscMPIInt rank; 55ace3abfcSBarry Smith PetscBool iascii; 566849ba73SBarry Smith PetscErrorCode ierr; 575a5d4f66SBarry Smith 585a5d4f66SBarry Smith PetscFunctionBegin; 590700a824SBarry Smith PetscValidHeaderSpecific(mapping,IS_LTOGM_CLASSID,1); 603050cee2SBarry Smith if (!viewer) { 617adad957SLisandro Dalcin ierr = PetscViewerASCIIGetStdout(((PetscObject)mapping)->comm,&viewer);CHKERRQ(ierr); 623050cee2SBarry Smith } 630700a824SBarry Smith PetscValidHeaderSpecific(viewer,PETSC_VIEWER_CLASSID,2); 645a5d4f66SBarry Smith 657adad957SLisandro Dalcin ierr = MPI_Comm_rank(((PetscObject)mapping)->comm,&rank);CHKERRQ(ierr); 66251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 6732077d6dSBarry Smith if (iascii) { 687b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_TRUE);CHKERRQ(ierr); 695a5d4f66SBarry Smith for (i=0; i<mapping->n; i++) { 70b0a32e0cSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] %d %d\n",rank,i,mapping->indices[i]);CHKERRQ(ierr); 716831982aSBarry Smith } 72b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 737b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_FALSE);CHKERRQ(ierr); 747b23a99aSBarry Smith } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Viewer type %s not supported for ISLocalToGlobalMapping",((PetscObject)viewer)->type_name); 755a5d4f66SBarry Smith PetscFunctionReturn(0); 765a5d4f66SBarry Smith } 775a5d4f66SBarry Smith 784a2ae208SSatish Balay #undef __FUNCT__ 794a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingCreateIS" 801f428162SBarry Smith /*@ 812bdab257SBarry Smith ISLocalToGlobalMappingCreateIS - Creates a mapping between a local (0 to n) 822bdab257SBarry Smith ordering and a global parallel ordering. 832bdab257SBarry Smith 840f5bd95cSBarry Smith Not collective 85b9cd556bSLois Curfman McInnes 86a997ad1aSLois Curfman McInnes Input Parameter: 878c03b21aSDmitry Karpeev . is - index set containing the global numbers for each local number 882bdab257SBarry Smith 89a997ad1aSLois Curfman McInnes Output Parameter: 902bdab257SBarry Smith . mapping - new mapping data structure 912bdab257SBarry Smith 92a997ad1aSLois Curfman McInnes Level: advanced 93a997ad1aSLois Curfman McInnes 94273d9f13SBarry Smith Concepts: mapping^local to global 952bdab257SBarry Smith 962bdab257SBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreate() 972bdab257SBarry Smith @*/ 987087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingCreateIS(IS is,ISLocalToGlobalMapping *mapping) 992bdab257SBarry Smith { 1006849ba73SBarry Smith PetscErrorCode ierr; 1015d0c19d7SBarry Smith PetscInt n; 1025d0c19d7SBarry Smith const PetscInt *indices; 1032bdab257SBarry Smith MPI_Comm comm; 1043a40ed3dSBarry Smith 1053a40ed3dSBarry Smith PetscFunctionBegin; 1060700a824SBarry Smith PetscValidHeaderSpecific(is,IS_CLASSID,1); 1074482741eSBarry Smith PetscValidPointer(mapping,2); 1082bdab257SBarry Smith 1092bdab257SBarry Smith ierr = PetscObjectGetComm((PetscObject)is,&comm);CHKERRQ(ierr); 1103b9aefa3SBarry Smith ierr = ISGetLocalSize(is,&n);CHKERRQ(ierr); 1112bdab257SBarry Smith ierr = ISGetIndices(is,&indices);CHKERRQ(ierr); 112d5ad8652SBarry Smith ierr = ISLocalToGlobalMappingCreate(comm,n,indices,PETSC_COPY_VALUES,mapping);CHKERRQ(ierr); 1132bdab257SBarry Smith ierr = ISRestoreIndices(is,&indices);CHKERRQ(ierr); 1143a40ed3dSBarry Smith PetscFunctionReturn(0); 1152bdab257SBarry Smith } 1165a5d4f66SBarry Smith 117a4d96a55SJed Brown #undef __FUNCT__ 118a4d96a55SJed Brown #define __FUNCT__ "ISLocalToGlobalMappingCreateSF" 119a4d96a55SJed Brown /*@C 120a4d96a55SJed Brown ISLocalToGlobalMappingCreateSF - Creates a mapping between a local (0 to n) 121a4d96a55SJed Brown ordering and a global parallel ordering. 122a4d96a55SJed Brown 123a4d96a55SJed Brown Collective 124a4d96a55SJed Brown 125a4d96a55SJed Brown Input Parameter: 126a4d96a55SJed Brown + sf - star forest mapping contiguous local indices to (rank, offset) 127a4d96a55SJed Brown - start - first global index on this process 128a4d96a55SJed Brown 129a4d96a55SJed Brown Output Parameter: 130a4d96a55SJed Brown . mapping - new mapping data structure 131a4d96a55SJed Brown 132a4d96a55SJed Brown Level: advanced 133a4d96a55SJed Brown 134a4d96a55SJed Brown Concepts: mapping^local to global 135a4d96a55SJed Brown 136a4d96a55SJed Brown .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreate(), ISLocalToGlobalMappingCreateIS() 137a4d96a55SJed Brown @*/ 138a4d96a55SJed Brown PetscErrorCode ISLocalToGlobalMappingCreateSF(PetscSF sf,PetscInt start,ISLocalToGlobalMapping *mapping) 139a4d96a55SJed Brown { 140a4d96a55SJed Brown PetscErrorCode ierr; 141a4d96a55SJed Brown PetscInt i,maxlocal,nroots,nleaves,*globals,*ltog; 142a4d96a55SJed Brown const PetscInt *ilocal; 143a4d96a55SJed Brown MPI_Comm comm; 144a4d96a55SJed Brown 145a4d96a55SJed Brown PetscFunctionBegin; 146a4d96a55SJed Brown PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 147a4d96a55SJed Brown PetscValidPointer(mapping,3); 148a4d96a55SJed Brown 149a4d96a55SJed Brown ierr = PetscObjectGetComm((PetscObject)sf,&comm);CHKERRQ(ierr); 150a4d96a55SJed Brown ierr = PetscSFGetGraph(sf,&nroots,&nleaves,&ilocal,PETSC_NULL);CHKERRQ(ierr); 151a4d96a55SJed Brown if (ilocal) {for (i=0,maxlocal=0; i<nleaves; i++) maxlocal = PetscMax(maxlocal,ilocal[i]+1);} 152a4d96a55SJed Brown else maxlocal = nleaves; 153a4d96a55SJed Brown ierr = PetscMalloc(nroots*sizeof(PetscInt),&globals);CHKERRQ(ierr); 154a4d96a55SJed Brown ierr = PetscMalloc(maxlocal*sizeof(PetscInt),<og);CHKERRQ(ierr); 155a4d96a55SJed Brown for (i=0; i<nroots; i++) globals[i] = start + i; 156a4d96a55SJed Brown for (i=0; i<maxlocal; i++) ltog[i] = -1; 157a4d96a55SJed Brown ierr = PetscSFBcastBegin(sf,MPIU_INT,globals,ltog);CHKERRQ(ierr); 158a4d96a55SJed Brown ierr = PetscSFBcastEnd(sf,MPIU_INT,globals,ltog);CHKERRQ(ierr); 159a4d96a55SJed Brown ierr = ISLocalToGlobalMappingCreate(comm,maxlocal,ltog,PETSC_OWN_POINTER,mapping);CHKERRQ(ierr); 160a4d96a55SJed Brown ierr = PetscFree(globals);CHKERRQ(ierr); 161a4d96a55SJed Brown PetscFunctionReturn(0); 162a4d96a55SJed Brown } 163b46b645bSBarry Smith 1644a2ae208SSatish Balay #undef __FUNCT__ 1654a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingCreate" 166ba5bb76aSSatish Balay /*@ 16790f02eecSBarry Smith ISLocalToGlobalMappingCreate - Creates a mapping between a local (0 to n) 16890f02eecSBarry Smith ordering and a global parallel ordering. 1692362add9SBarry Smith 17089d82c54SBarry Smith Not Collective, but communicator may have more than one process 171b9cd556bSLois Curfman McInnes 1722362add9SBarry Smith Input Parameters: 17389d82c54SBarry Smith + comm - MPI communicator 17490f02eecSBarry Smith . n - the number of local elements 1759669e4d8SBarry Smith . indices - the global index for each local element, these do not need to be in increasing order (sorted) 176d5ad8652SBarry Smith - mode - see PetscCopyMode 1772362add9SBarry Smith 178a997ad1aSLois Curfman McInnes Output Parameter: 17990f02eecSBarry Smith . mapping - new mapping data structure 1802362add9SBarry Smith 181a997ad1aSLois Curfman McInnes Level: advanced 182a997ad1aSLois Curfman McInnes 183273d9f13SBarry Smith Concepts: mapping^local to global 1842362add9SBarry Smith 185d5ad8652SBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreateIS() 1862362add9SBarry Smith @*/ 1877087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingCreate(MPI_Comm cm,PetscInt n,const PetscInt indices[],PetscCopyMode mode,ISLocalToGlobalMapping *mapping) 1882362add9SBarry Smith { 1896849ba73SBarry Smith PetscErrorCode ierr; 19032dcc486SBarry Smith PetscInt *in; 191b46b645bSBarry Smith 192b46b645bSBarry Smith PetscFunctionBegin; 19373911063SBarry Smith if (n) PetscValidIntPointer(indices,3); 1944482741eSBarry Smith PetscValidPointer(mapping,4); 195b46b645bSBarry Smith 1968e58c17dSMatthew Knepley *mapping = PETSC_NULL; 197519f805aSKarl Rupp #if !defined(PETSC_USE_DYNAMIC_LIBRARIES) 1982b6de112SBarry Smith ierr = ISInitializePackage(PETSC_NULL);CHKERRQ(ierr); 1998e58c17dSMatthew Knepley #endif 2002362add9SBarry Smith 2013194b578SJed Brown ierr = PetscHeaderCreate(*mapping,_p_ISLocalToGlobalMapping,int,IS_LTOGM_CLASSID,0,"ISLocalToGlobalMapping","Local to global mapping","IS", 20252e6d16bSBarry Smith cm,ISLocalToGlobalMappingDestroy,ISLocalToGlobalMappingView);CHKERRQ(ierr); 203d4bb536fSBarry Smith (*mapping)->n = n; 204d4bb536fSBarry Smith /* 205d4bb536fSBarry Smith Do not create the global to local mapping. This is only created if 206d4bb536fSBarry Smith ISGlobalToLocalMapping() is called 207d4bb536fSBarry Smith */ 208d4bb536fSBarry Smith (*mapping)->globals = 0; 209d5ad8652SBarry Smith if (mode == PETSC_COPY_VALUES) { 210d5ad8652SBarry Smith ierr = PetscMalloc(n*sizeof(PetscInt),&in);CHKERRQ(ierr); 211d5ad8652SBarry Smith ierr = PetscMemcpy(in,indices,n*sizeof(PetscInt));CHKERRQ(ierr); 212d5ad8652SBarry Smith ierr = PetscLogObjectMemory(*mapping,n*sizeof(PetscInt));CHKERRQ(ierr); 213d5ad8652SBarry Smith (*mapping)->indices = in; 214d5ad8652SBarry Smith } else if (mode == PETSC_OWN_POINTER) { 215d5ad8652SBarry Smith (*mapping)->indices = (PetscInt*)indices; 216d5ad8652SBarry Smith } else SETERRQ(cm,PETSC_ERR_SUP,"Cannot currently use PETSC_USE_POINTER"); 2173a40ed3dSBarry Smith PetscFunctionReturn(0); 2182362add9SBarry Smith } 2192362add9SBarry Smith 2204a2ae208SSatish Balay #undef __FUNCT__ 2214a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingBlock" 222bce096a4SSatish Balay /*@ 223323b833fSBarry Smith ISLocalToGlobalMappingBlock - Creates a blocked index version of an 224323b833fSBarry Smith ISLocalToGlobalMapping that is appropriate for MatSetLocalToGlobalMappingBlock() 225323b833fSBarry Smith and VecSetLocalToGlobalMappingBlock(). 226323b833fSBarry Smith 227323b833fSBarry Smith Not Collective, but communicator may have more than one process 228323b833fSBarry Smith 229323b833fSBarry Smith Input Parameters: 230323b833fSBarry Smith + inmap - original point-wise mapping 231323b833fSBarry Smith - bs - block size 232323b833fSBarry Smith 233323b833fSBarry Smith Output Parameter: 23469eb54c3SBarry Smith . outmap - block based mapping; the indices are relative to BLOCKS, not individual vector or matrix entries. 235323b833fSBarry Smith 236323b833fSBarry Smith Level: advanced 237323b833fSBarry Smith 238323b833fSBarry Smith Concepts: mapping^local to global 239323b833fSBarry Smith 240323b833fSBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreate(), ISLocalToGlobalMappingCreateIS() 241323b833fSBarry Smith @*/ 2427087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingBlock(ISLocalToGlobalMapping inmap,PetscInt bs,ISLocalToGlobalMapping *outmap) 243323b833fSBarry Smith { 2446849ba73SBarry Smith PetscErrorCode ierr; 24532dcc486SBarry Smith PetscInt *ii,i,n; 246323b833fSBarry Smith 247323b833fSBarry Smith PetscFunctionBegin; 2480700a824SBarry Smith PetscValidHeaderSpecific(inmap,IS_LTOGM_CLASSID,1); 249b2beed0aSJed Brown PetscValidPointer(outmap,3); 250323b833fSBarry Smith if (bs > 1) { 251323b833fSBarry Smith n = inmap->n/bs; 252e32f2f54SBarry Smith if (n*bs != inmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Pointwise mapping length is not divisible by block size"); 25332dcc486SBarry Smith ierr = PetscMalloc(n*sizeof(PetscInt),&ii);CHKERRQ(ierr); 254323b833fSBarry Smith for (i=0; i<n; i++) { 255db032c9dSBarry Smith ii[i] = inmap->indices[bs*i]/bs; 256323b833fSBarry Smith } 257d5ad8652SBarry Smith ierr = ISLocalToGlobalMappingCreate(((PetscObject)inmap)->comm,n,ii,PETSC_OWN_POINTER,outmap);CHKERRQ(ierr); 258323b833fSBarry Smith } else { 259323b833fSBarry Smith ierr = PetscObjectReference((PetscObject)inmap);CHKERRQ(ierr); 260c3122656SLisandro Dalcin *outmap = inmap; 261323b833fSBarry Smith } 262323b833fSBarry Smith PetscFunctionReturn(0); 263323b833fSBarry Smith } 264323b833fSBarry Smith 2654a2ae208SSatish Balay #undef __FUNCT__ 2668ab951edSJed Brown #define __FUNCT__ "ISLocalToGlobalMappingUnBlock" 267b2beed0aSJed Brown /*@ 268b2beed0aSJed Brown ISLocalToGlobalMappingUnBlock - Creates a scalar index version of a blocked 269b2beed0aSJed Brown ISLocalToGlobalMapping 270b2beed0aSJed Brown 271b2beed0aSJed Brown Not Collective, but communicator may have more than one process 272b2beed0aSJed Brown 273b2beed0aSJed Brown Input Parameter: 274b2beed0aSJed Brown + inmap - block based mapping; the indices are relative to BLOCKS, not individual vector or matrix entries. 275b2beed0aSJed Brown - bs - block size 276b2beed0aSJed Brown 277b2beed0aSJed Brown Output Parameter: 278b2beed0aSJed Brown . outmap - pointwise mapping 279b2beed0aSJed Brown 280b2beed0aSJed Brown Level: advanced 281b2beed0aSJed Brown 282b2beed0aSJed Brown Concepts: mapping^local to global 283b2beed0aSJed Brown 284b2beed0aSJed Brown .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreate(), ISLocalToGlobalMappingBlock() 285b2beed0aSJed Brown @*/ 2867087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingUnBlock(ISLocalToGlobalMapping inmap,PetscInt bs,ISLocalToGlobalMapping *outmap) 287b2beed0aSJed Brown { 288b2beed0aSJed Brown PetscErrorCode ierr; 289b2beed0aSJed Brown PetscInt *ii,i,n; 290b2beed0aSJed Brown 291b2beed0aSJed Brown PetscFunctionBegin; 292b2beed0aSJed Brown PetscValidHeaderSpecific(inmap,IS_LTOGM_CLASSID,1); 293b2beed0aSJed Brown PetscValidPointer(outmap,2); 294b2beed0aSJed Brown if (bs > 1) { 295b2beed0aSJed Brown n = inmap->n*bs; 296b2beed0aSJed Brown ierr = PetscMalloc(n*sizeof(PetscInt),&ii);CHKERRQ(ierr); 297b2beed0aSJed Brown for (i=0; i<n; i++) { 29894f4c46bSJed Brown ii[i] = inmap->indices[i/bs]*bs + (i%bs); 299b2beed0aSJed Brown } 300b2beed0aSJed Brown ierr = ISLocalToGlobalMappingCreate(((PetscObject)inmap)->comm,n,ii,PETSC_OWN_POINTER,outmap);CHKERRQ(ierr); 301b2beed0aSJed Brown } else { 302b2beed0aSJed Brown ierr = PetscObjectReference((PetscObject)inmap);CHKERRQ(ierr); 303b2beed0aSJed Brown *outmap = inmap; 304b2beed0aSJed Brown } 305b2beed0aSJed Brown PetscFunctionReturn(0); 306b2beed0aSJed Brown } 307b2beed0aSJed Brown 308b2beed0aSJed Brown #undef __FUNCT__ 3094a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingDestroy" 31090f02eecSBarry Smith /*@ 31190f02eecSBarry Smith ISLocalToGlobalMappingDestroy - Destroys a mapping between a local (0 to n) 31290f02eecSBarry Smith ordering and a global parallel ordering. 31390f02eecSBarry Smith 3140f5bd95cSBarry Smith Note Collective 315b9cd556bSLois Curfman McInnes 31690f02eecSBarry Smith Input Parameters: 31790f02eecSBarry Smith . mapping - mapping data structure 31890f02eecSBarry Smith 319a997ad1aSLois Curfman McInnes Level: advanced 320a997ad1aSLois Curfman McInnes 3213acfe500SLois Curfman McInnes .seealso: ISLocalToGlobalMappingCreate() 32290f02eecSBarry Smith @*/ 3236bf464f9SBarry Smith PetscErrorCode ISLocalToGlobalMappingDestroy(ISLocalToGlobalMapping *mapping) 32490f02eecSBarry Smith { 325dfbe8321SBarry Smith PetscErrorCode ierr; 326*5fd66863SKarl Rupp 3273a40ed3dSBarry Smith PetscFunctionBegin; 3286bf464f9SBarry Smith if (!*mapping) PetscFunctionReturn(0); 3296bf464f9SBarry Smith PetscValidHeaderSpecific((*mapping),IS_LTOGM_CLASSID,1); 330997056adSBarry Smith if (--((PetscObject)(*mapping))->refct > 0) {*mapping = 0;PetscFunctionReturn(0);} 3316bf464f9SBarry Smith ierr = PetscFree((*mapping)->indices);CHKERRQ(ierr); 3326bf464f9SBarry Smith ierr = PetscFree((*mapping)->globals);CHKERRQ(ierr); 333d38fa0fbSBarry Smith ierr = PetscHeaderDestroy(mapping);CHKERRQ(ierr); 334992144d0SBarry Smith *mapping = 0; 3353a40ed3dSBarry Smith PetscFunctionReturn(0); 33690f02eecSBarry Smith } 33790f02eecSBarry Smith 3384a2ae208SSatish Balay #undef __FUNCT__ 3394a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingApplyIS" 34090f02eecSBarry Smith /*@ 3413acfe500SLois Curfman McInnes ISLocalToGlobalMappingApplyIS - Creates from an IS in the local numbering 3423acfe500SLois Curfman McInnes a new index set using the global numbering defined in an ISLocalToGlobalMapping 3433acfe500SLois Curfman McInnes context. 34490f02eecSBarry Smith 345b9cd556bSLois Curfman McInnes Not collective 346b9cd556bSLois Curfman McInnes 34790f02eecSBarry Smith Input Parameters: 348b9cd556bSLois Curfman McInnes + mapping - mapping between local and global numbering 349b9cd556bSLois Curfman McInnes - is - index set in local numbering 35090f02eecSBarry Smith 35190f02eecSBarry Smith Output Parameters: 35290f02eecSBarry Smith . newis - index set in global numbering 35390f02eecSBarry Smith 354a997ad1aSLois Curfman McInnes Level: advanced 355a997ad1aSLois Curfman McInnes 356273d9f13SBarry Smith Concepts: mapping^local to global 3573acfe500SLois Curfman McInnes 35890f02eecSBarry Smith .seealso: ISLocalToGlobalMappingApply(), ISLocalToGlobalMappingCreate(), 359d4bb536fSBarry Smith ISLocalToGlobalMappingDestroy(), ISGlobalToLocalMappingApply() 36090f02eecSBarry Smith @*/ 3617087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingApplyIS(ISLocalToGlobalMapping mapping,IS is,IS *newis) 36290f02eecSBarry Smith { 3636849ba73SBarry Smith PetscErrorCode ierr; 3645d0c19d7SBarry Smith PetscInt n,i,*idxmap,*idxout,Nmax = mapping->n; 3655d0c19d7SBarry Smith const PetscInt *idxin; 3663a40ed3dSBarry Smith 3673a40ed3dSBarry Smith PetscFunctionBegin; 3680700a824SBarry Smith PetscValidHeaderSpecific(mapping,IS_LTOGM_CLASSID,1); 3690700a824SBarry Smith PetscValidHeaderSpecific(is,IS_CLASSID,2); 3704482741eSBarry Smith PetscValidPointer(newis,3); 37190f02eecSBarry Smith 3723b9aefa3SBarry Smith ierr = ISGetLocalSize(is,&n);CHKERRQ(ierr); 37390f02eecSBarry Smith ierr = ISGetIndices(is,&idxin);CHKERRQ(ierr); 37490f02eecSBarry Smith idxmap = mapping->indices; 37590f02eecSBarry Smith 3767c334f02SBarry Smith ierr = PetscMalloc(n*sizeof(PetscInt),&idxout);CHKERRQ(ierr); 37790f02eecSBarry Smith for (i=0; i<n; i++) { 378e32f2f54SBarry Smith if (idxin[i] >= Nmax) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local index %d too large %d (max) at %d",idxin[i],Nmax-1,i); 37990f02eecSBarry Smith idxout[i] = idxmap[idxin[i]]; 38090f02eecSBarry Smith } 3813b9aefa3SBarry Smith ierr = ISRestoreIndices(is,&idxin);CHKERRQ(ierr); 38270b3c8c7SBarry Smith ierr = ISCreateGeneral(PETSC_COMM_SELF,n,idxout,PETSC_OWN_POINTER,newis);CHKERRQ(ierr); 3833a40ed3dSBarry Smith PetscFunctionReturn(0); 38490f02eecSBarry Smith } 38590f02eecSBarry Smith 38689d82c54SBarry Smith /*MC 3873acfe500SLois Curfman McInnes ISLocalToGlobalMappingApply - Takes a list of integers in a local numbering 3883acfe500SLois Curfman McInnes and converts them to the global numbering. 38990f02eecSBarry Smith 390eca87e8dSBarry Smith Synopsis: 391f2ba6396SBarry Smith #include "petscis.h" 392eca87e8dSBarry Smith PetscErrorCode ISLocalToGlobalMappingApply(ISLocalToGlobalMapping mapping,int N,int in[],int out[]) 393eca87e8dSBarry Smith 394b9cd556bSLois Curfman McInnes Not collective 395b9cd556bSLois Curfman McInnes 396bb25748dSBarry Smith Input Parameters: 397b9cd556bSLois Curfman McInnes + mapping - the local to global mapping context 398bb25748dSBarry Smith . N - number of integers 399b9cd556bSLois Curfman McInnes - in - input indices in local numbering 400bb25748dSBarry Smith 401bb25748dSBarry Smith Output Parameter: 402bb25748dSBarry Smith . out - indices in global numbering 403bb25748dSBarry Smith 404b9cd556bSLois Curfman McInnes Notes: 405b9cd556bSLois Curfman McInnes The in and out array parameters may be identical. 406d4bb536fSBarry Smith 407a997ad1aSLois Curfman McInnes Level: advanced 408a997ad1aSLois Curfman McInnes 409bb25748dSBarry Smith .seealso: ISLocalToGlobalMappingCreate(),ISLocalToGlobalMappingDestroy(), 4100752156aSBarry Smith ISLocalToGlobalMappingApplyIS(),AOCreateBasic(),AOApplicationToPetsc(), 411d4bb536fSBarry Smith AOPetscToApplication(), ISGlobalToLocalMappingApply() 412bb25748dSBarry Smith 413273d9f13SBarry Smith Concepts: mapping^local to global 414d4bb536fSBarry Smith 41589d82c54SBarry Smith M*/ 416d4bb536fSBarry Smith 417d4bb536fSBarry Smith /* -----------------------------------------------------------------------------------------*/ 418d4bb536fSBarry Smith 4194a2ae208SSatish Balay #undef __FUNCT__ 4204a2ae208SSatish Balay #define __FUNCT__ "ISGlobalToLocalMappingSetUp_Private" 421d4bb536fSBarry Smith /* 422d4bb536fSBarry Smith Creates the global fields in the ISLocalToGlobalMapping structure 423d4bb536fSBarry Smith */ 4246849ba73SBarry Smith static PetscErrorCode ISGlobalToLocalMappingSetUp_Private(ISLocalToGlobalMapping mapping) 425d4bb536fSBarry Smith { 4266849ba73SBarry Smith PetscErrorCode ierr; 42732dcc486SBarry Smith PetscInt i,*idx = mapping->indices,n = mapping->n,end,start,*globals; 428d4bb536fSBarry Smith 4293a40ed3dSBarry Smith PetscFunctionBegin; 430d4bb536fSBarry Smith end = 0; 431ec268f7cSJed Brown start = PETSC_MAX_INT; 432d4bb536fSBarry Smith 433d4bb536fSBarry Smith for (i=0; i<n; i++) { 434d4bb536fSBarry Smith if (idx[i] < 0) continue; 435d4bb536fSBarry Smith if (idx[i] < start) start = idx[i]; 436d4bb536fSBarry Smith if (idx[i] > end) end = idx[i]; 437d4bb536fSBarry Smith } 438d4bb536fSBarry Smith if (start > end) {start = 0; end = -1;} 439d4bb536fSBarry Smith mapping->globalstart = start; 440d4bb536fSBarry Smith mapping->globalend = end; 441d4bb536fSBarry Smith 44232dcc486SBarry Smith ierr = PetscMalloc((end-start+2)*sizeof(PetscInt),&globals);CHKERRQ(ierr); 443b0a32e0cSBarry Smith mapping->globals = globals; 444d4bb536fSBarry Smith for (i=0; i<end-start+1; i++) { 445d4bb536fSBarry Smith globals[i] = -1; 446d4bb536fSBarry Smith } 447d4bb536fSBarry Smith for (i=0; i<n; i++) { 448d4bb536fSBarry Smith if (idx[i] < 0) continue; 449d4bb536fSBarry Smith globals[idx[i] - start] = i; 450d4bb536fSBarry Smith } 451d4bb536fSBarry Smith 45252e6d16bSBarry Smith ierr = PetscLogObjectMemory(mapping,(end-start+1)*sizeof(PetscInt));CHKERRQ(ierr); 4533a40ed3dSBarry Smith PetscFunctionReturn(0); 454d4bb536fSBarry Smith } 455d4bb536fSBarry Smith 4564a2ae208SSatish Balay #undef __FUNCT__ 4574a2ae208SSatish Balay #define __FUNCT__ "ISGlobalToLocalMappingApply" 458d4bb536fSBarry Smith /*@ 459a997ad1aSLois Curfman McInnes ISGlobalToLocalMappingApply - Provides the local numbering for a list of integers 460a997ad1aSLois Curfman McInnes specified with a global numbering. 461d4bb536fSBarry Smith 462b9cd556bSLois Curfman McInnes Not collective 463b9cd556bSLois Curfman McInnes 464d4bb536fSBarry Smith Input Parameters: 465b9cd556bSLois Curfman McInnes + mapping - mapping between local and global numbering 466d4bb536fSBarry Smith . type - IS_GTOLM_MASK - replaces global indices with no local value with -1 467d4bb536fSBarry Smith IS_GTOLM_DROP - drops the indices with no local value from the output list 468d4bb536fSBarry Smith . n - number of global indices to map 469b9cd556bSLois Curfman McInnes - idx - global indices to map 470d4bb536fSBarry Smith 471d4bb536fSBarry Smith Output Parameters: 472b9cd556bSLois Curfman McInnes + nout - number of indices in output array (if type == IS_GTOLM_MASK then nout = n) 473b9cd556bSLois Curfman McInnes - idxout - local index of each global index, one must pass in an array long enough 474e182c471SBarry Smith to hold all the indices. You can call ISGlobalToLocalMappingApply() with 475e182c471SBarry Smith idxout == PETSC_NULL to determine the required length (returned in nout) 476e182c471SBarry Smith and then allocate the required space and call ISGlobalToLocalMappingApply() 477e182c471SBarry Smith a second time to set the values. 478d4bb536fSBarry Smith 479b9cd556bSLois Curfman McInnes Notes: 480b9cd556bSLois Curfman McInnes Either nout or idxout may be PETSC_NULL. idx and idxout may be identical. 481d4bb536fSBarry Smith 4820f5bd95cSBarry Smith This is not scalable in memory usage. Each processor requires O(Nglobal) size 4830f5bd95cSBarry Smith array to compute these. 4840f5bd95cSBarry Smith 485a997ad1aSLois Curfman McInnes Level: advanced 486a997ad1aSLois Curfman McInnes 48732fd6b96SBarry Smith Developer Note: The manual page states that idx and idxout may be identical but the calling 48832fd6b96SBarry Smith sequence declares idx as const so it cannot be the same as idxout. 48932fd6b96SBarry Smith 490273d9f13SBarry Smith Concepts: mapping^global to local 491d4bb536fSBarry Smith 492d4bb536fSBarry Smith .seealso: ISLocalToGlobalMappingApply(), ISLocalToGlobalMappingCreate(), 493d4bb536fSBarry Smith ISLocalToGlobalMappingDestroy() 494d4bb536fSBarry Smith @*/ 4957087cfbeSBarry Smith PetscErrorCode ISGlobalToLocalMappingApply(ISLocalToGlobalMapping mapping,ISGlobalToLocalMappingType type, 49632dcc486SBarry Smith PetscInt n,const PetscInt idx[],PetscInt *nout,PetscInt idxout[]) 497d4bb536fSBarry Smith { 49832dcc486SBarry Smith PetscInt i,*globals,nf = 0,tmp,start,end; 4996849ba73SBarry Smith PetscErrorCode ierr; 500d4bb536fSBarry Smith 5013a40ed3dSBarry Smith PetscFunctionBegin; 5020700a824SBarry Smith PetscValidHeaderSpecific(mapping,IS_LTOGM_CLASSID,1); 503d4bb536fSBarry Smith if (!mapping->globals) { 504d4bb536fSBarry Smith ierr = ISGlobalToLocalMappingSetUp_Private(mapping);CHKERRQ(ierr); 505d4bb536fSBarry Smith } 506d4bb536fSBarry Smith globals = mapping->globals; 507d4bb536fSBarry Smith start = mapping->globalstart; 508d4bb536fSBarry Smith end = mapping->globalend; 509d4bb536fSBarry Smith 510d4bb536fSBarry Smith if (type == IS_GTOLM_MASK) { 511d4bb536fSBarry Smith if (idxout) { 512d4bb536fSBarry Smith for (i=0; i<n; i++) { 513d4bb536fSBarry Smith if (idx[i] < 0) idxout[i] = idx[i]; 514d4bb536fSBarry Smith else if (idx[i] < start) idxout[i] = -1; 515d4bb536fSBarry Smith else if (idx[i] > end) idxout[i] = -1; 516d4bb536fSBarry Smith else idxout[i] = globals[idx[i] - start]; 517d4bb536fSBarry Smith } 518d4bb536fSBarry Smith } 519d4bb536fSBarry Smith if (nout) *nout = n; 520d4bb536fSBarry Smith } else { 521d4bb536fSBarry Smith if (idxout) { 522d4bb536fSBarry Smith for (i=0; i<n; i++) { 523d4bb536fSBarry Smith if (idx[i] < 0) continue; 524d4bb536fSBarry Smith if (idx[i] < start) continue; 525d4bb536fSBarry Smith if (idx[i] > end) continue; 526d4bb536fSBarry Smith tmp = globals[idx[i] - start]; 527d4bb536fSBarry Smith if (tmp < 0) continue; 528d4bb536fSBarry Smith idxout[nf++] = tmp; 529d4bb536fSBarry Smith } 530d4bb536fSBarry Smith } else { 531d4bb536fSBarry Smith for (i=0; i<n; i++) { 532d4bb536fSBarry Smith if (idx[i] < 0) continue; 533d4bb536fSBarry Smith if (idx[i] < start) continue; 534d4bb536fSBarry Smith if (idx[i] > end) continue; 535d4bb536fSBarry Smith tmp = globals[idx[i] - start]; 536d4bb536fSBarry Smith if (tmp < 0) continue; 537d4bb536fSBarry Smith nf++; 538d4bb536fSBarry Smith } 539d4bb536fSBarry Smith } 540d4bb536fSBarry Smith if (nout) *nout = nf; 541d4bb536fSBarry Smith } 542d4bb536fSBarry Smith 5433a40ed3dSBarry Smith PetscFunctionReturn(0); 544d4bb536fSBarry Smith } 54590f02eecSBarry Smith 5464a2ae208SSatish Balay #undef __FUNCT__ 5474a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingGetInfo" 54889d82c54SBarry Smith /*@C 54989d82c54SBarry Smith ISLocalToGlobalMappingGetInfo - Gets the neighbor information for each processor and 55089d82c54SBarry Smith each index shared by more than one processor 55189d82c54SBarry Smith 55289d82c54SBarry Smith Collective on ISLocalToGlobalMapping 55389d82c54SBarry Smith 55489d82c54SBarry Smith Input Parameters: 55589d82c54SBarry Smith . mapping - the mapping from local to global indexing 55689d82c54SBarry Smith 55789d82c54SBarry Smith Output Parameter: 55889d82c54SBarry Smith + nproc - number of processors that are connected to this one 55989d82c54SBarry Smith . proc - neighboring processors 56007b52d57SBarry Smith . numproc - number of indices for each subdomain (processor) 5613463a7baSJed Brown - indices - indices of nodes (in local numbering) shared with neighbors (sorted by global numbering) 56289d82c54SBarry Smith 56389d82c54SBarry Smith Level: advanced 56489d82c54SBarry Smith 565273d9f13SBarry Smith Concepts: mapping^local to global 56689d82c54SBarry Smith 5672cfcea29SBarry Smith Fortran Usage: 5682cfcea29SBarry Smith $ ISLocalToGlobalMpngGetInfoSize(ISLocalToGlobalMapping,PetscInt nproc,PetscInt numprocmax,ierr) followed by 5692cfcea29SBarry Smith $ ISLocalToGlobalMappingGetInfo(ISLocalToGlobalMapping,PetscInt nproc, PetscInt procs[nproc],PetscInt numprocs[nproc], 5702cfcea29SBarry Smith PetscInt indices[nproc][numprocmax],ierr) 5712cfcea29SBarry Smith There is no ISLocalToGlobalMappingRestoreInfo() in Fortran. You must make sure that procs[], numprocs[] and 5722cfcea29SBarry Smith indices[][] are large enough arrays, either by allocating them dynamically or defining static ones large enough. 5732cfcea29SBarry Smith 5742cfcea29SBarry Smith 57507b52d57SBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreateIS(), ISLocalToGlobalMappingCreate(), 57607b52d57SBarry Smith ISLocalToGlobalMappingRestoreInfo() 57789d82c54SBarry Smith @*/ 5787087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingGetInfo(ISLocalToGlobalMapping mapping,PetscInt *nproc,PetscInt *procs[],PetscInt *numprocs[],PetscInt **indices[]) 57989d82c54SBarry Smith { 5806849ba73SBarry Smith PetscErrorCode ierr; 58197f1f81fSBarry Smith PetscMPIInt size,rank,tag1,tag2,tag3,*len,*source,imdex; 58232dcc486SBarry Smith PetscInt i,n = mapping->n,Ng,ng,max = 0,*lindices = mapping->indices; 58332dcc486SBarry Smith PetscInt *nprocs,*owner,nsends,*sends,j,*starts,nmax,nrecvs,*recvs,proc; 58497f1f81fSBarry Smith PetscInt cnt,scale,*ownedsenders,*nownedsenders,rstart,nowned; 58532dcc486SBarry Smith PetscInt node,nownedm,nt,*sends2,nsends2,*starts2,*lens2,*dest,nrecvs2,*starts3,*recvs2,k,*bprocs,*tmp; 58632dcc486SBarry Smith PetscInt first_procs,first_numprocs,*first_indices; 58789d82c54SBarry Smith MPI_Request *recv_waits,*send_waits; 58830dcb7c9SBarry Smith MPI_Status recv_status,*send_status,*recv_statuses; 5897adad957SLisandro Dalcin MPI_Comm comm = ((PetscObject)mapping)->comm; 590ace3abfcSBarry Smith PetscBool debug = PETSC_FALSE; 59189d82c54SBarry Smith 59289d82c54SBarry Smith PetscFunctionBegin; 5930700a824SBarry Smith PetscValidHeaderSpecific(mapping,IS_LTOGM_CLASSID,1); 59424cf384cSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 59524cf384cSBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 59624cf384cSBarry Smith if (size == 1) { 59724cf384cSBarry Smith *nproc = 0; 59824cf384cSBarry Smith *procs = PETSC_NULL; 59932dcc486SBarry Smith ierr = PetscMalloc(sizeof(PetscInt),numprocs);CHKERRQ(ierr); 6001e2105dcSBarry Smith (*numprocs)[0] = 0; 60132dcc486SBarry Smith ierr = PetscMalloc(sizeof(PetscInt*),indices);CHKERRQ(ierr); 6021e2105dcSBarry Smith (*indices)[0] = PETSC_NULL; 60324cf384cSBarry Smith PetscFunctionReturn(0); 60424cf384cSBarry Smith } 60524cf384cSBarry Smith 606acfcf0e5SJed Brown ierr = PetscOptionsGetBool(PETSC_NULL,"-islocaltoglobalmappinggetinfo_debug",&debug,PETSC_NULL);CHKERRQ(ierr); 60707b52d57SBarry Smith 6083677ff5aSBarry Smith /* 6093677ff5aSBarry Smith Notes on ISLocalToGlobalMappingGetInfo 6103677ff5aSBarry Smith 6113677ff5aSBarry Smith globally owned node - the nodes that have been assigned to this processor in global 6123677ff5aSBarry Smith numbering, just for this routine. 6133677ff5aSBarry Smith 6143677ff5aSBarry Smith nontrivial globally owned node - node assigned to this processor that is on a subdomain 6153677ff5aSBarry Smith boundary (i.e. is has more than one local owner) 6163677ff5aSBarry Smith 6173677ff5aSBarry Smith locally owned node - node that exists on this processors subdomain 6183677ff5aSBarry Smith 6193677ff5aSBarry Smith nontrivial locally owned node - node that is not in the interior (i.e. has more than one 6203677ff5aSBarry Smith local subdomain 6213677ff5aSBarry Smith */ 62224cf384cSBarry Smith ierr = PetscObjectGetNewTag((PetscObject)mapping,&tag1);CHKERRQ(ierr); 62324cf384cSBarry Smith ierr = PetscObjectGetNewTag((PetscObject)mapping,&tag2);CHKERRQ(ierr); 62424cf384cSBarry Smith ierr = PetscObjectGetNewTag((PetscObject)mapping,&tag3);CHKERRQ(ierr); 62589d82c54SBarry Smith 62689d82c54SBarry Smith for (i=0; i<n; i++) { 62789d82c54SBarry Smith if (lindices[i] > max) max = lindices[i]; 62889d82c54SBarry Smith } 62932dcc486SBarry Smith ierr = MPI_Allreduce(&max,&Ng,1,MPIU_INT,MPI_MAX,comm);CHKERRQ(ierr); 63078058e43SBarry Smith Ng++; 63189d82c54SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 63289d82c54SBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 633bc8ff85bSBarry Smith scale = Ng/size + 1; 634a2e34c3dSBarry Smith ng = scale; if (rank == size-1) ng = Ng - scale*(size-1); ng = PetscMax(1,ng); 635caba0dd0SBarry Smith rstart = scale*rank; 63689d82c54SBarry Smith 63789d82c54SBarry Smith /* determine ownership ranges of global indices */ 6387c334f02SBarry Smith ierr = PetscMalloc(2*size*sizeof(PetscInt),&nprocs);CHKERRQ(ierr); 63932dcc486SBarry Smith ierr = PetscMemzero(nprocs,2*size*sizeof(PetscInt));CHKERRQ(ierr); 64089d82c54SBarry Smith 64189d82c54SBarry Smith /* determine owners of each local node */ 6427c334f02SBarry Smith ierr = PetscMalloc(n*sizeof(PetscInt),&owner);CHKERRQ(ierr); 64389d82c54SBarry Smith for (i=0; i<n; i++) { 6443677ff5aSBarry Smith proc = lindices[i]/scale; /* processor that globally owns this index */ 64527c402fcSBarry Smith nprocs[2*proc+1] = 1; /* processor globally owns at least one of ours */ 6463677ff5aSBarry Smith owner[i] = proc; 64727c402fcSBarry Smith nprocs[2*proc]++; /* count of how many that processor globally owns of ours */ 64889d82c54SBarry Smith } 64927c402fcSBarry Smith nsends = 0; for (i=0; i<size; i++) nsends += nprocs[2*i+1]; 6501e2582c4SBarry Smith ierr = PetscInfo1(mapping,"Number of global owners for my local data %d\n",nsends);CHKERRQ(ierr); 65189d82c54SBarry Smith 65289d82c54SBarry Smith /* inform other processors of number of messages and max length*/ 65327c402fcSBarry Smith ierr = PetscMaxSum(comm,nprocs,&nmax,&nrecvs);CHKERRQ(ierr); 6541e2582c4SBarry Smith ierr = PetscInfo1(mapping,"Number of local owners for my global data %d\n",nrecvs);CHKERRQ(ierr); 65589d82c54SBarry Smith 65689d82c54SBarry Smith /* post receives for owned rows */ 65732dcc486SBarry Smith ierr = PetscMalloc((2*nrecvs+1)*(nmax+1)*sizeof(PetscInt),&recvs);CHKERRQ(ierr); 658b0a32e0cSBarry Smith ierr = PetscMalloc((nrecvs+1)*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr); 65989d82c54SBarry Smith for (i=0; i<nrecvs; i++) { 66032dcc486SBarry Smith ierr = MPI_Irecv(recvs+2*nmax*i,2*nmax,MPIU_INT,MPI_ANY_SOURCE,tag1,comm,recv_waits+i);CHKERRQ(ierr); 66189d82c54SBarry Smith } 66289d82c54SBarry Smith 66389d82c54SBarry Smith /* pack messages containing lists of local nodes to owners */ 66432dcc486SBarry Smith ierr = PetscMalloc((2*n+1)*sizeof(PetscInt),&sends);CHKERRQ(ierr); 66532dcc486SBarry Smith ierr = PetscMalloc((size+1)*sizeof(PetscInt),&starts);CHKERRQ(ierr); 66689d82c54SBarry Smith starts[0] = 0; 66727c402fcSBarry Smith for (i=1; i<size; i++) { starts[i] = starts[i-1] + 2*nprocs[2*i-2];} 66889d82c54SBarry Smith for (i=0; i<n; i++) { 66989d82c54SBarry Smith sends[starts[owner[i]]++] = lindices[i]; 67030dcb7c9SBarry Smith sends[starts[owner[i]]++] = i; 67189d82c54SBarry Smith } 67289d82c54SBarry Smith ierr = PetscFree(owner);CHKERRQ(ierr); 67389d82c54SBarry Smith starts[0] = 0; 67427c402fcSBarry Smith for (i=1; i<size; i++) { starts[i] = starts[i-1] + 2*nprocs[2*i-2];} 67589d82c54SBarry Smith 67689d82c54SBarry Smith /* send the messages */ 677b0a32e0cSBarry Smith ierr = PetscMalloc((nsends+1)*sizeof(MPI_Request),&send_waits);CHKERRQ(ierr); 67832dcc486SBarry Smith ierr = PetscMalloc((nsends+1)*sizeof(PetscInt),&dest);CHKERRQ(ierr); 67989d82c54SBarry Smith cnt = 0; 68089d82c54SBarry Smith for (i=0; i<size; i++) { 68127c402fcSBarry Smith if (nprocs[2*i]) { 68232dcc486SBarry Smith ierr = MPI_Isend(sends+starts[i],2*nprocs[2*i],MPIU_INT,i,tag1,comm,send_waits+cnt);CHKERRQ(ierr); 68330dcb7c9SBarry Smith dest[cnt] = i; 68489d82c54SBarry Smith cnt++; 68589d82c54SBarry Smith } 68689d82c54SBarry Smith } 68789d82c54SBarry Smith ierr = PetscFree(starts);CHKERRQ(ierr); 68889d82c54SBarry Smith 68989d82c54SBarry Smith /* wait on receives */ 69097f1f81fSBarry Smith ierr = PetscMalloc((nrecvs+1)*sizeof(PetscMPIInt),&source);CHKERRQ(ierr); 69197f1f81fSBarry Smith ierr = PetscMalloc((nrecvs+1)*sizeof(PetscMPIInt),&len);CHKERRQ(ierr); 69289d82c54SBarry Smith cnt = nrecvs; 69332dcc486SBarry Smith ierr = PetscMalloc((ng+1)*sizeof(PetscInt),&nownedsenders);CHKERRQ(ierr); 69432dcc486SBarry Smith ierr = PetscMemzero(nownedsenders,ng*sizeof(PetscInt));CHKERRQ(ierr); 69589d82c54SBarry Smith while (cnt) { 69689d82c54SBarry Smith ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr); 69789d82c54SBarry Smith /* unpack receives into our local space */ 69832dcc486SBarry Smith ierr = MPI_Get_count(&recv_status,MPIU_INT,&len[imdex]);CHKERRQ(ierr); 69989d82c54SBarry Smith source[imdex] = recv_status.MPI_SOURCE; 70030dcb7c9SBarry Smith len[imdex] = len[imdex]/2; 701caba0dd0SBarry Smith /* count how many local owners for each of my global owned indices */ 70230dcb7c9SBarry Smith for (i=0; i<len[imdex]; i++) nownedsenders[recvs[2*imdex*nmax+2*i]-rstart]++; 70389d82c54SBarry Smith cnt--; 70489d82c54SBarry Smith } 70589d82c54SBarry Smith ierr = PetscFree(recv_waits);CHKERRQ(ierr); 70689d82c54SBarry Smith 70730dcb7c9SBarry Smith /* count how many globally owned indices are on an edge multiplied by how many processors own them. */ 708bc8ff85bSBarry Smith nowned = 0; 709bc8ff85bSBarry Smith nownedm = 0; 710bc8ff85bSBarry Smith for (i=0; i<ng; i++) { 711bc8ff85bSBarry Smith if (nownedsenders[i] > 1) {nownedm += nownedsenders[i]; nowned++;} 712bc8ff85bSBarry Smith } 713bc8ff85bSBarry Smith 714bc8ff85bSBarry Smith /* create single array to contain rank of all local owners of each globally owned index */ 71532dcc486SBarry Smith ierr = PetscMalloc((nownedm+1)*sizeof(PetscInt),&ownedsenders);CHKERRQ(ierr); 71632dcc486SBarry Smith ierr = PetscMalloc((ng+1)*sizeof(PetscInt),&starts);CHKERRQ(ierr); 717bc8ff85bSBarry Smith starts[0] = 0; 718bc8ff85bSBarry Smith for (i=1; i<ng; i++) { 719bc8ff85bSBarry Smith if (nownedsenders[i-1] > 1) starts[i] = starts[i-1] + nownedsenders[i-1]; 720bc8ff85bSBarry Smith else starts[i] = starts[i-1]; 721bc8ff85bSBarry Smith } 722bc8ff85bSBarry Smith 72330dcb7c9SBarry Smith /* for each nontrival globally owned node list all arriving processors */ 724bc8ff85bSBarry Smith for (i=0; i<nrecvs; i++) { 725bc8ff85bSBarry Smith for (j=0; j<len[i]; j++) { 72630dcb7c9SBarry Smith node = recvs[2*i*nmax+2*j]-rstart; 727bc8ff85bSBarry Smith if (nownedsenders[node] > 1) { 728bc8ff85bSBarry Smith ownedsenders[starts[node]++] = source[i]; 729bc8ff85bSBarry Smith } 730bc8ff85bSBarry Smith } 731bc8ff85bSBarry Smith } 732bc8ff85bSBarry Smith 73307b52d57SBarry Smith if (debug) { /* ----------------------------------- */ 73430dcb7c9SBarry Smith starts[0] = 0; 73530dcb7c9SBarry Smith for (i=1; i<ng; i++) { 73630dcb7c9SBarry Smith if (nownedsenders[i-1] > 1) starts[i] = starts[i-1] + nownedsenders[i-1]; 73730dcb7c9SBarry Smith else starts[i] = starts[i-1]; 73830dcb7c9SBarry Smith } 73930dcb7c9SBarry Smith for (i=0; i<ng; i++) { 74030dcb7c9SBarry Smith if (nownedsenders[i] > 1) { 74130dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"[%d] global node %d local owner processors: ",rank,i+rstart);CHKERRQ(ierr); 74230dcb7c9SBarry Smith for (j=0; j<nownedsenders[i]; j++) { 74330dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"%d ",ownedsenders[starts[i]+j]);CHKERRQ(ierr); 74430dcb7c9SBarry Smith } 74530dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"\n");CHKERRQ(ierr); 74630dcb7c9SBarry Smith } 74730dcb7c9SBarry Smith } 74830dcb7c9SBarry Smith ierr = PetscSynchronizedFlush(comm);CHKERRQ(ierr); 74907b52d57SBarry Smith }/* ----------------------------------- */ 75030dcb7c9SBarry Smith 7513677ff5aSBarry Smith /* wait on original sends */ 7523a96401aSBarry Smith if (nsends) { 753b0a32e0cSBarry Smith ierr = PetscMalloc(nsends*sizeof(MPI_Status),&send_status);CHKERRQ(ierr); 7543a96401aSBarry Smith ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr); 7553a96401aSBarry Smith ierr = PetscFree(send_status);CHKERRQ(ierr); 7563a96401aSBarry Smith } 75789d82c54SBarry Smith ierr = PetscFree(send_waits);CHKERRQ(ierr); 7583a96401aSBarry Smith ierr = PetscFree(sends);CHKERRQ(ierr); 7593677ff5aSBarry Smith ierr = PetscFree(nprocs);CHKERRQ(ierr); 7603677ff5aSBarry Smith 7613677ff5aSBarry Smith /* pack messages to send back to local owners */ 76230dcb7c9SBarry Smith starts[0] = 0; 76330dcb7c9SBarry Smith for (i=1; i<ng; i++) { 76430dcb7c9SBarry Smith if (nownedsenders[i-1] > 1) starts[i] = starts[i-1] + nownedsenders[i-1]; 76530dcb7c9SBarry Smith else starts[i] = starts[i-1]; 76630dcb7c9SBarry Smith } 76730dcb7c9SBarry Smith nsends2 = nrecvs; 76832dcc486SBarry Smith ierr = PetscMalloc((nsends2+1)*sizeof(PetscInt),&nprocs);CHKERRQ(ierr); /* length of each message */ 76930dcb7c9SBarry Smith for (i=0; i<nrecvs; i++) { 77030dcb7c9SBarry Smith nprocs[i] = 1; 77130dcb7c9SBarry Smith for (j=0; j<len[i]; j++) { 77230dcb7c9SBarry Smith node = recvs[2*i*nmax+2*j]-rstart; 77330dcb7c9SBarry Smith if (nownedsenders[node] > 1) { 77430dcb7c9SBarry Smith nprocs[i] += 2 + nownedsenders[node]; 77530dcb7c9SBarry Smith } 77630dcb7c9SBarry Smith } 77730dcb7c9SBarry Smith } 77830dcb7c9SBarry Smith nt = 0; for (i=0; i<nsends2; i++) nt += nprocs[i]; 77932dcc486SBarry Smith ierr = PetscMalloc((nt+1)*sizeof(PetscInt),&sends2);CHKERRQ(ierr); 78032dcc486SBarry Smith ierr = PetscMalloc((nsends2+1)*sizeof(PetscInt),&starts2);CHKERRQ(ierr); 78130dcb7c9SBarry Smith starts2[0] = 0; for (i=1; i<nsends2; i++) starts2[i] = starts2[i-1] + nprocs[i-1]; 78230dcb7c9SBarry Smith /* 78330dcb7c9SBarry Smith Each message is 1 + nprocs[i] long, and consists of 78430dcb7c9SBarry Smith (0) the number of nodes being sent back 78530dcb7c9SBarry Smith (1) the local node number, 78630dcb7c9SBarry Smith (2) the number of processors sharing it, 78730dcb7c9SBarry Smith (3) the processors sharing it 78830dcb7c9SBarry Smith */ 78930dcb7c9SBarry Smith for (i=0; i<nsends2; i++) { 79030dcb7c9SBarry Smith cnt = 1; 79130dcb7c9SBarry Smith sends2[starts2[i]] = 0; 79230dcb7c9SBarry Smith for (j=0; j<len[i]; j++) { 79330dcb7c9SBarry Smith node = recvs[2*i*nmax+2*j]-rstart; 79430dcb7c9SBarry Smith if (nownedsenders[node] > 1) { 79530dcb7c9SBarry Smith sends2[starts2[i]]++; 79630dcb7c9SBarry Smith sends2[starts2[i]+cnt++] = recvs[2*i*nmax+2*j+1]; 79730dcb7c9SBarry Smith sends2[starts2[i]+cnt++] = nownedsenders[node]; 79832dcc486SBarry Smith ierr = PetscMemcpy(&sends2[starts2[i]+cnt],&ownedsenders[starts[node]],nownedsenders[node]*sizeof(PetscInt));CHKERRQ(ierr); 79930dcb7c9SBarry Smith cnt += nownedsenders[node]; 80030dcb7c9SBarry Smith } 80130dcb7c9SBarry Smith } 80230dcb7c9SBarry Smith } 80330dcb7c9SBarry Smith 80430dcb7c9SBarry Smith /* receive the message lengths */ 80530dcb7c9SBarry Smith nrecvs2 = nsends; 80632dcc486SBarry Smith ierr = PetscMalloc((nrecvs2+1)*sizeof(PetscInt),&lens2);CHKERRQ(ierr); 80732dcc486SBarry Smith ierr = PetscMalloc((nrecvs2+1)*sizeof(PetscInt),&starts3);CHKERRQ(ierr); 808d44834fbSBarry Smith ierr = PetscMalloc((nrecvs2+1)*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr); 80930dcb7c9SBarry Smith for (i=0; i<nrecvs2; i++) { 810d44834fbSBarry Smith ierr = MPI_Irecv(&lens2[i],1,MPIU_INT,dest[i],tag2,comm,recv_waits+i);CHKERRQ(ierr); 81130dcb7c9SBarry Smith } 812d44834fbSBarry Smith 8138a8e0b3aSBarry Smith /* send the message lengths */ 8148a8e0b3aSBarry Smith for (i=0; i<nsends2; i++) { 8158a8e0b3aSBarry Smith ierr = MPI_Send(&nprocs[i],1,MPIU_INT,source[i],tag2,comm);CHKERRQ(ierr); 8168a8e0b3aSBarry Smith } 8178a8e0b3aSBarry Smith 818d44834fbSBarry Smith /* wait on receives of lens */ 8190c468ba9SBarry Smith if (nrecvs2) { 8200c468ba9SBarry Smith ierr = PetscMalloc(nrecvs2*sizeof(MPI_Status),&recv_statuses);CHKERRQ(ierr); 821d44834fbSBarry Smith ierr = MPI_Waitall(nrecvs2,recv_waits,recv_statuses);CHKERRQ(ierr); 822d44834fbSBarry Smith ierr = PetscFree(recv_statuses);CHKERRQ(ierr); 8230c468ba9SBarry Smith } 824a2ea699eSBarry Smith ierr = PetscFree(recv_waits);CHKERRQ(ierr); 825d44834fbSBarry Smith 82630dcb7c9SBarry Smith starts3[0] = 0; 827d44834fbSBarry Smith nt = 0; 82830dcb7c9SBarry Smith for (i=0; i<nrecvs2-1; i++) { 82930dcb7c9SBarry Smith starts3[i+1] = starts3[i] + lens2[i]; 830d44834fbSBarry Smith nt += lens2[i]; 83130dcb7c9SBarry Smith } 83276466f69SStefano Zampini if (nrecvs2) nt += lens2[nrecvs2-1]; 833d44834fbSBarry Smith 83432dcc486SBarry Smith ierr = PetscMalloc((nt+1)*sizeof(PetscInt),&recvs2);CHKERRQ(ierr); 835b0a32e0cSBarry Smith ierr = PetscMalloc((nrecvs2+1)*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr); 83652b72c4aSBarry Smith for (i=0; i<nrecvs2; i++) { 83732dcc486SBarry Smith ierr = MPI_Irecv(recvs2+starts3[i],lens2[i],MPIU_INT,dest[i],tag3,comm,recv_waits+i);CHKERRQ(ierr); 83830dcb7c9SBarry Smith } 83930dcb7c9SBarry Smith 84030dcb7c9SBarry Smith /* send the messages */ 841b0a32e0cSBarry Smith ierr = PetscMalloc((nsends2+1)*sizeof(MPI_Request),&send_waits);CHKERRQ(ierr); 84230dcb7c9SBarry Smith for (i=0; i<nsends2; i++) { 84332dcc486SBarry Smith ierr = MPI_Isend(sends2+starts2[i],nprocs[i],MPIU_INT,source[i],tag3,comm,send_waits+i);CHKERRQ(ierr); 84430dcb7c9SBarry Smith } 84530dcb7c9SBarry Smith 84630dcb7c9SBarry Smith /* wait on receives */ 8470c468ba9SBarry Smith if (nrecvs2) { 8480c468ba9SBarry Smith ierr = PetscMalloc(nrecvs2*sizeof(MPI_Status),&recv_statuses);CHKERRQ(ierr); 84930dcb7c9SBarry Smith ierr = MPI_Waitall(nrecvs2,recv_waits,recv_statuses);CHKERRQ(ierr); 85030dcb7c9SBarry Smith ierr = PetscFree(recv_statuses);CHKERRQ(ierr); 8510c468ba9SBarry Smith } 85230dcb7c9SBarry Smith ierr = PetscFree(recv_waits);CHKERRQ(ierr); 85330dcb7c9SBarry Smith ierr = PetscFree(nprocs);CHKERRQ(ierr); 85430dcb7c9SBarry Smith 85507b52d57SBarry Smith if (debug) { /* ----------------------------------- */ 85630dcb7c9SBarry Smith cnt = 0; 85730dcb7c9SBarry Smith for (i=0; i<nrecvs2; i++) { 85830dcb7c9SBarry Smith nt = recvs2[cnt++]; 85930dcb7c9SBarry Smith for (j=0; j<nt; j++) { 86030dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"[%d] local node %d number of subdomains %d: ",rank,recvs2[cnt],recvs2[cnt+1]);CHKERRQ(ierr); 86130dcb7c9SBarry Smith for (k=0; k<recvs2[cnt+1]; k++) { 86230dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"%d ",recvs2[cnt+2+k]);CHKERRQ(ierr); 86330dcb7c9SBarry Smith } 86430dcb7c9SBarry Smith cnt += 2 + recvs2[cnt+1]; 86530dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"\n");CHKERRQ(ierr); 86630dcb7c9SBarry Smith } 86730dcb7c9SBarry Smith } 86830dcb7c9SBarry Smith ierr = PetscSynchronizedFlush(comm);CHKERRQ(ierr); 86907b52d57SBarry Smith } /* ----------------------------------- */ 87030dcb7c9SBarry Smith 87130dcb7c9SBarry Smith /* count number subdomains for each local node */ 87232dcc486SBarry Smith ierr = PetscMalloc(size*sizeof(PetscInt),&nprocs);CHKERRQ(ierr); 87332dcc486SBarry Smith ierr = PetscMemzero(nprocs,size*sizeof(PetscInt));CHKERRQ(ierr); 87430dcb7c9SBarry Smith cnt = 0; 87530dcb7c9SBarry Smith for (i=0; i<nrecvs2; i++) { 87630dcb7c9SBarry Smith nt = recvs2[cnt++]; 87730dcb7c9SBarry Smith for (j=0; j<nt; j++) { 87830dcb7c9SBarry Smith for (k=0; k<recvs2[cnt+1]; k++) { 87930dcb7c9SBarry Smith nprocs[recvs2[cnt+2+k]]++; 88030dcb7c9SBarry Smith } 88130dcb7c9SBarry Smith cnt += 2 + recvs2[cnt+1]; 88230dcb7c9SBarry Smith } 88330dcb7c9SBarry Smith } 88430dcb7c9SBarry Smith nt = 0; for (i=0; i<size; i++) nt += (nprocs[i] > 0); 88530dcb7c9SBarry Smith *nproc = nt; 88632dcc486SBarry Smith ierr = PetscMalloc((nt+1)*sizeof(PetscInt),procs);CHKERRQ(ierr); 88732dcc486SBarry Smith ierr = PetscMalloc((nt+1)*sizeof(PetscInt),numprocs);CHKERRQ(ierr); 88832dcc486SBarry Smith ierr = PetscMalloc((nt+1)*sizeof(PetscInt*),indices);CHKERRQ(ierr); 88976466f69SStefano Zampini for (i=0;i<nt+1;i++) { (*indices)[i]=PETSC_NULL; } 89032dcc486SBarry Smith ierr = PetscMalloc(size*sizeof(PetscInt),&bprocs);CHKERRQ(ierr); 89130dcb7c9SBarry Smith cnt = 0; 89230dcb7c9SBarry Smith for (i=0; i<size; i++) { 89330dcb7c9SBarry Smith if (nprocs[i] > 0) { 89430dcb7c9SBarry Smith bprocs[i] = cnt; 89530dcb7c9SBarry Smith (*procs)[cnt] = i; 89630dcb7c9SBarry Smith (*numprocs)[cnt] = nprocs[i]; 89732dcc486SBarry Smith ierr = PetscMalloc(nprocs[i]*sizeof(PetscInt),&(*indices)[cnt]);CHKERRQ(ierr); 89830dcb7c9SBarry Smith cnt++; 89930dcb7c9SBarry Smith } 90030dcb7c9SBarry Smith } 90130dcb7c9SBarry Smith 90230dcb7c9SBarry Smith /* make the list of subdomains for each nontrivial local node */ 90332dcc486SBarry Smith ierr = PetscMemzero(*numprocs,nt*sizeof(PetscInt));CHKERRQ(ierr); 90430dcb7c9SBarry Smith cnt = 0; 90530dcb7c9SBarry Smith for (i=0; i<nrecvs2; i++) { 90630dcb7c9SBarry Smith nt = recvs2[cnt++]; 90730dcb7c9SBarry Smith for (j=0; j<nt; j++) { 90830dcb7c9SBarry Smith for (k=0; k<recvs2[cnt+1]; k++) { 90930dcb7c9SBarry Smith (*indices)[bprocs[recvs2[cnt+2+k]]][(*numprocs)[bprocs[recvs2[cnt+2+k]]]++] = recvs2[cnt]; 91030dcb7c9SBarry Smith } 91130dcb7c9SBarry Smith cnt += 2 + recvs2[cnt+1]; 91230dcb7c9SBarry Smith } 91330dcb7c9SBarry Smith } 91430dcb7c9SBarry Smith ierr = PetscFree(bprocs);CHKERRQ(ierr); 91507b52d57SBarry Smith ierr = PetscFree(recvs2);CHKERRQ(ierr); 91630dcb7c9SBarry Smith 91707b52d57SBarry Smith /* sort the node indexing by their global numbers */ 91807b52d57SBarry Smith nt = *nproc; 91907b52d57SBarry Smith for (i=0; i<nt; i++) { 92032dcc486SBarry Smith ierr = PetscMalloc(((*numprocs)[i])*sizeof(PetscInt),&tmp);CHKERRQ(ierr); 92107b52d57SBarry Smith for (j=0; j<(*numprocs)[i]; j++) { 92207b52d57SBarry Smith tmp[j] = lindices[(*indices)[i][j]]; 92307b52d57SBarry Smith } 92407b52d57SBarry Smith ierr = PetscSortIntWithArray((*numprocs)[i],tmp,(*indices)[i]);CHKERRQ(ierr); 92507b52d57SBarry Smith ierr = PetscFree(tmp);CHKERRQ(ierr); 92607b52d57SBarry Smith } 92707b52d57SBarry Smith 92807b52d57SBarry Smith if (debug) { /* ----------------------------------- */ 92930dcb7c9SBarry Smith nt = *nproc; 93030dcb7c9SBarry Smith for (i=0; i<nt; i++) { 93130dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"[%d] subdomain %d number of indices %d: ",rank,(*procs)[i],(*numprocs)[i]);CHKERRQ(ierr); 93230dcb7c9SBarry Smith for (j=0; j<(*numprocs)[i]; j++) { 93330dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"%d ",(*indices)[i][j]);CHKERRQ(ierr); 93430dcb7c9SBarry Smith } 93530dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"\n");CHKERRQ(ierr); 93630dcb7c9SBarry Smith } 93730dcb7c9SBarry Smith ierr = PetscSynchronizedFlush(comm);CHKERRQ(ierr); 93807b52d57SBarry Smith } /* ----------------------------------- */ 93930dcb7c9SBarry Smith 94030dcb7c9SBarry Smith /* wait on sends */ 94130dcb7c9SBarry Smith if (nsends2) { 942b0a32e0cSBarry Smith ierr = PetscMalloc(nsends2*sizeof(MPI_Status),&send_status);CHKERRQ(ierr); 94330dcb7c9SBarry Smith ierr = MPI_Waitall(nsends2,send_waits,send_status);CHKERRQ(ierr); 94430dcb7c9SBarry Smith ierr = PetscFree(send_status);CHKERRQ(ierr); 94530dcb7c9SBarry Smith } 94630dcb7c9SBarry Smith 94730dcb7c9SBarry Smith ierr = PetscFree(starts3);CHKERRQ(ierr); 94830dcb7c9SBarry Smith ierr = PetscFree(dest);CHKERRQ(ierr); 94930dcb7c9SBarry Smith ierr = PetscFree(send_waits);CHKERRQ(ierr); 9503677ff5aSBarry Smith 951bc8ff85bSBarry Smith ierr = PetscFree(nownedsenders);CHKERRQ(ierr); 952bc8ff85bSBarry Smith ierr = PetscFree(ownedsenders);CHKERRQ(ierr); 953bc8ff85bSBarry Smith ierr = PetscFree(starts);CHKERRQ(ierr); 95430dcb7c9SBarry Smith ierr = PetscFree(starts2);CHKERRQ(ierr); 95530dcb7c9SBarry Smith ierr = PetscFree(lens2);CHKERRQ(ierr); 95689d82c54SBarry Smith 95789d82c54SBarry Smith ierr = PetscFree(source);CHKERRQ(ierr); 95897f1f81fSBarry Smith ierr = PetscFree(len);CHKERRQ(ierr); 95989d82c54SBarry Smith ierr = PetscFree(recvs);CHKERRQ(ierr); 9603a96401aSBarry Smith ierr = PetscFree(nprocs);CHKERRQ(ierr); 96130dcb7c9SBarry Smith ierr = PetscFree(sends2);CHKERRQ(ierr); 96224cf384cSBarry Smith 96324cf384cSBarry Smith /* put the information about myself as the first entry in the list */ 96424cf384cSBarry Smith first_procs = (*procs)[0]; 96524cf384cSBarry Smith first_numprocs = (*numprocs)[0]; 96624cf384cSBarry Smith first_indices = (*indices)[0]; 96724cf384cSBarry Smith for (i=0; i<*nproc; i++) { 96824cf384cSBarry Smith if ((*procs)[i] == rank) { 96924cf384cSBarry Smith (*procs)[0] = (*procs)[i]; 97024cf384cSBarry Smith (*numprocs)[0] = (*numprocs)[i]; 97124cf384cSBarry Smith (*indices)[0] = (*indices)[i]; 97224cf384cSBarry Smith (*procs)[i] = first_procs; 97324cf384cSBarry Smith (*numprocs)[i] = first_numprocs; 97424cf384cSBarry Smith (*indices)[i] = first_indices; 97524cf384cSBarry Smith break; 97624cf384cSBarry Smith } 97724cf384cSBarry Smith } 97889d82c54SBarry Smith PetscFunctionReturn(0); 97989d82c54SBarry Smith } 98089d82c54SBarry Smith 9814a2ae208SSatish Balay #undef __FUNCT__ 9824a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingRestoreInfo" 98307b52d57SBarry Smith /*@C 98407b52d57SBarry Smith ISLocalToGlobalMappingRestoreInfo - Frees the memory allocated by ISLocalToGlobalMappingGetInfo() 98589d82c54SBarry Smith 98607b52d57SBarry Smith Collective on ISLocalToGlobalMapping 98707b52d57SBarry Smith 98807b52d57SBarry Smith Input Parameters: 98907b52d57SBarry Smith . mapping - the mapping from local to global indexing 99007b52d57SBarry Smith 99107b52d57SBarry Smith Output Parameter: 99207b52d57SBarry Smith + nproc - number of processors that are connected to this one 99307b52d57SBarry Smith . proc - neighboring processors 99407b52d57SBarry Smith . numproc - number of indices for each processor 99507b52d57SBarry Smith - indices - indices of local nodes shared with neighbor (sorted by global numbering) 99607b52d57SBarry Smith 99707b52d57SBarry Smith Level: advanced 99807b52d57SBarry Smith 99907b52d57SBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreateIS(), ISLocalToGlobalMappingCreate(), 100007b52d57SBarry Smith ISLocalToGlobalMappingGetInfo() 100107b52d57SBarry Smith @*/ 10027087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingRestoreInfo(ISLocalToGlobalMapping mapping,PetscInt *nproc,PetscInt *procs[],PetscInt *numprocs[],PetscInt **indices[]) 100307b52d57SBarry Smith { 10046849ba73SBarry Smith PetscErrorCode ierr; 100532dcc486SBarry Smith PetscInt i; 100607b52d57SBarry Smith 100707b52d57SBarry Smith PetscFunctionBegin; 100805b42c5fSBarry Smith ierr = PetscFree(*procs);CHKERRQ(ierr); 100905b42c5fSBarry Smith ierr = PetscFree(*numprocs);CHKERRQ(ierr); 101000ff320aSBarry Smith if (*indices) { 101105b42c5fSBarry Smith ierr = PetscFree((*indices)[0]);CHKERRQ(ierr); 101200ff320aSBarry Smith for (i=1; i<*nproc; i++) { 101305b42c5fSBarry Smith ierr = PetscFree((*indices)[i]);CHKERRQ(ierr); 101407b52d57SBarry Smith } 101507b52d57SBarry Smith ierr = PetscFree(*indices);CHKERRQ(ierr); 101624cf384cSBarry Smith } 101707b52d57SBarry Smith PetscFunctionReturn(0); 101807b52d57SBarry Smith } 101986994e45SJed Brown 102086994e45SJed Brown #undef __FUNCT__ 102186994e45SJed Brown #define __FUNCT__ "ISLocalToGlobalMappingGetIndices" 102286994e45SJed Brown /*@C 102386994e45SJed Brown ISLocalToGlobalMappingGetIndices - Get global indices for every local point 102486994e45SJed Brown 102586994e45SJed Brown Not Collective 102686994e45SJed Brown 102786994e45SJed Brown Input Arguments: 102886994e45SJed Brown . ltog - local to global mapping 102986994e45SJed Brown 103086994e45SJed Brown Output Arguments: 103186994e45SJed Brown . array - array of indices 103286994e45SJed Brown 103386994e45SJed Brown Level: advanced 103486994e45SJed Brown 103586994e45SJed Brown .seealso: ISLocalToGlobalMappingCreate(), ISLocalToGlobalMappingApply(), ISLocalToGlobalMappingRestoreIndices() 103686994e45SJed Brown @*/ 10377087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingGetIndices(ISLocalToGlobalMapping ltog,const PetscInt **array) 103886994e45SJed Brown { 103986994e45SJed Brown PetscFunctionBegin; 104086994e45SJed Brown PetscValidHeaderSpecific(ltog,IS_LTOGM_CLASSID,1); 104186994e45SJed Brown PetscValidPointer(array,2); 104286994e45SJed Brown *array = ltog->indices; 104386994e45SJed Brown PetscFunctionReturn(0); 104486994e45SJed Brown } 104586994e45SJed Brown 104686994e45SJed Brown #undef __FUNCT__ 104786994e45SJed Brown #define __FUNCT__ "ISLocalToGlobalMappingRestoreIndices" 104886994e45SJed Brown /*@C 104986994e45SJed Brown ISLocalToGlobalMappingRestoreIndices - Restore indices obtained with ISLocalToGlobalMappingRestoreIndices() 105086994e45SJed Brown 105186994e45SJed Brown Not Collective 105286994e45SJed Brown 105386994e45SJed Brown Input Arguments: 105486994e45SJed Brown + ltog - local to global mapping 105586994e45SJed Brown - array - array of indices 105686994e45SJed Brown 105786994e45SJed Brown Level: advanced 105886994e45SJed Brown 105986994e45SJed Brown .seealso: ISLocalToGlobalMappingCreate(), ISLocalToGlobalMappingApply(), ISLocalToGlobalMappingGetIndices() 106086994e45SJed Brown @*/ 10617087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingRestoreIndices(ISLocalToGlobalMapping ltog,const PetscInt **array) 106286994e45SJed Brown { 106386994e45SJed Brown PetscFunctionBegin; 106486994e45SJed Brown PetscValidHeaderSpecific(ltog,IS_LTOGM_CLASSID,1); 106586994e45SJed Brown PetscValidPointer(array,2); 106686994e45SJed Brown if (*array != ltog->indices) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_BADPTR,"Trying to return mismatched pointer"); 106786994e45SJed Brown *array = PETSC_NULL; 106886994e45SJed Brown PetscFunctionReturn(0); 106986994e45SJed Brown } 1070f7efa3c7SJed Brown 1071f7efa3c7SJed Brown #undef __FUNCT__ 1072f7efa3c7SJed Brown #define __FUNCT__ "ISLocalToGlobalMappingConcatenate" 1073f7efa3c7SJed Brown /*@C 1074f7efa3c7SJed Brown ISLocalToGlobalMappingConcatenate - Create a new mapping that concatenates a list of mappings 1075f7efa3c7SJed Brown 1076f7efa3c7SJed Brown Not Collective 1077f7efa3c7SJed Brown 1078f7efa3c7SJed Brown Input Arguments: 1079f7efa3c7SJed Brown + comm - communicator for the new mapping, must contain the communicator of every mapping to concatenate 1080f7efa3c7SJed Brown . n - number of mappings to concatenate 1081f7efa3c7SJed Brown - ltogs - local to global mappings 1082f7efa3c7SJed Brown 1083f7efa3c7SJed Brown Output Arguments: 1084f7efa3c7SJed Brown . ltogcat - new mapping 1085f7efa3c7SJed Brown 1086f7efa3c7SJed Brown Level: advanced 1087f7efa3c7SJed Brown 1088f7efa3c7SJed Brown .seealso: ISLocalToGlobalMappingCreate() 1089f7efa3c7SJed Brown @*/ 1090f7efa3c7SJed Brown PetscErrorCode ISLocalToGlobalMappingConcatenate(MPI_Comm comm,PetscInt n,const ISLocalToGlobalMapping ltogs[],ISLocalToGlobalMapping *ltogcat) 1091f7efa3c7SJed Brown { 1092f7efa3c7SJed Brown PetscInt i,cnt,m,*idx; 1093f7efa3c7SJed Brown PetscErrorCode ierr; 1094f7efa3c7SJed Brown 1095f7efa3c7SJed Brown PetscFunctionBegin; 1096f7efa3c7SJed Brown if (n < 0) SETERRQ1(comm,PETSC_ERR_ARG_OUTOFRANGE,"Must have a non-negative number of mappings, given %D",n); 1097f7efa3c7SJed Brown if (n > 0) PetscValidPointer(ltogs,3); 1098f7efa3c7SJed Brown for (i=0; i<n; i++) PetscValidHeaderSpecific(ltogs[i],IS_LTOGM_CLASSID,3); 1099f7efa3c7SJed Brown PetscValidPointer(ltogcat,4); 1100f7efa3c7SJed Brown for (cnt=0,i=0; i<n; i++) { 1101f7efa3c7SJed Brown ierr = ISLocalToGlobalMappingGetSize(ltogs[i],&m);CHKERRQ(ierr); 1102f7efa3c7SJed Brown cnt += m; 1103f7efa3c7SJed Brown } 1104f7efa3c7SJed Brown ierr = PetscMalloc(cnt*sizeof(PetscInt),&idx);CHKERRQ(ierr); 1105f7efa3c7SJed Brown for (cnt=0,i=0; i<n; i++) { 1106f7efa3c7SJed Brown const PetscInt *subidx; 1107f7efa3c7SJed Brown ierr = ISLocalToGlobalMappingGetSize(ltogs[i],&m);CHKERRQ(ierr); 1108f7efa3c7SJed Brown ierr = ISLocalToGlobalMappingGetIndices(ltogs[i],&subidx);CHKERRQ(ierr); 1109f7efa3c7SJed Brown ierr = PetscMemcpy(&idx[cnt],subidx,m*sizeof(PetscInt));CHKERRQ(ierr); 1110f7efa3c7SJed Brown ierr = ISLocalToGlobalMappingRestoreIndices(ltogs[i],&subidx);CHKERRQ(ierr); 1111f7efa3c7SJed Brown cnt += m; 1112f7efa3c7SJed Brown } 1113f7efa3c7SJed Brown ierr = ISLocalToGlobalMappingCreate(comm,cnt,idx,PETSC_OWN_POINTER,ltogcat);CHKERRQ(ierr); 1114f7efa3c7SJed Brown PetscFunctionReturn(0); 1115f7efa3c7SJed Brown } 1116