12362add9SBarry Smith 2b45d2f2cSJed Brown #include <petsc-private/isimpl.h> /*I "petscis.h" I*/ 3*665c2dedSJed Brown #include <petscviewer.h> 42362add9SBarry Smith 57087cfbeSBarry Smith PetscClassId IS_LTOGM_CLASSID; 68e58c17dSMatthew Knepley 74a2ae208SSatish Balay #undef __FUNCT__ 8186d4ecdSBarry Smith #define __FUNCT__ "ISL2GMapApply" 9186d4ecdSBarry Smith PetscErrorCode ISG2LMapApply(ISLocalToGlobalMapping mapping,PetscInt n,const PetscInt in[],PetscInt out[]) 10186d4ecdSBarry Smith { 11186d4ecdSBarry Smith PetscErrorCode ierr; 12186d4ecdSBarry Smith PetscInt i,*globals = mapping->globals,start = mapping->globalstart,end = mapping->globalend; 13186d4ecdSBarry Smith 14186d4ecdSBarry Smith PetscFunctionBegin; 15186d4ecdSBarry Smith if (!mapping->globals) { 16186d4ecdSBarry Smith ierr = ISGlobalToLocalMappingApply(mapping,IS_GTOLM_MASK,0,0,0,0);CHKERRQ(ierr); 17186d4ecdSBarry Smith } 18186d4ecdSBarry Smith for (i=0; i<n; i++) { 19186d4ecdSBarry Smith if (in[i] < 0) out[i] = in[i]; 20186d4ecdSBarry Smith else if (in[i] < start) out[i] = -1; 21186d4ecdSBarry Smith else if (in[i] > end) out[i] = -1; 22186d4ecdSBarry Smith else out[i] = globals[in[i] - start]; 23186d4ecdSBarry Smith } 24186d4ecdSBarry Smith PetscFunctionReturn(0); 25186d4ecdSBarry Smith } 26186d4ecdSBarry Smith 27186d4ecdSBarry Smith 28186d4ecdSBarry Smith #undef __FUNCT__ 294a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingGetSize" 303b9aefa3SBarry Smith /*@C 313b9aefa3SBarry Smith ISLocalToGlobalMappingGetSize - Gets the local size of a local to global mapping. 323b9aefa3SBarry Smith 333b9aefa3SBarry Smith Not Collective 343b9aefa3SBarry Smith 353b9aefa3SBarry Smith Input Parameter: 363b9aefa3SBarry Smith . ltog - local to global mapping 373b9aefa3SBarry Smith 383b9aefa3SBarry Smith Output Parameter: 393b9aefa3SBarry Smith . n - the number of entries in the local mapping 403b9aefa3SBarry Smith 413b9aefa3SBarry Smith Level: advanced 423b9aefa3SBarry Smith 43273d9f13SBarry Smith Concepts: mapping^local to global 443b9aefa3SBarry Smith 453b9aefa3SBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreate() 463b9aefa3SBarry Smith @*/ 477087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingGetSize(ISLocalToGlobalMapping mapping,PetscInt *n) 483b9aefa3SBarry Smith { 493b9aefa3SBarry Smith PetscFunctionBegin; 500700a824SBarry Smith PetscValidHeaderSpecific(mapping,IS_LTOGM_CLASSID,1); 514482741eSBarry Smith PetscValidIntPointer(n,2); 523b9aefa3SBarry Smith *n = mapping->n; 533b9aefa3SBarry Smith PetscFunctionReturn(0); 543b9aefa3SBarry Smith } 553b9aefa3SBarry Smith 564a2ae208SSatish Balay #undef __FUNCT__ 574a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingView" 585a5d4f66SBarry Smith /*@C 595a5d4f66SBarry Smith ISLocalToGlobalMappingView - View a local to global mapping 605a5d4f66SBarry Smith 61b9cd556bSLois Curfman McInnes Not Collective 62b9cd556bSLois Curfman McInnes 635a5d4f66SBarry Smith Input Parameters: 643b9aefa3SBarry Smith + ltog - local to global mapping 653b9aefa3SBarry Smith - viewer - viewer 665a5d4f66SBarry Smith 67a997ad1aSLois Curfman McInnes Level: advanced 68a997ad1aSLois Curfman McInnes 69273d9f13SBarry Smith Concepts: mapping^local to global 705a5d4f66SBarry Smith 715a5d4f66SBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreate() 725a5d4f66SBarry Smith @*/ 737087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingView(ISLocalToGlobalMapping mapping,PetscViewer viewer) 745a5d4f66SBarry Smith { 7532dcc486SBarry Smith PetscInt i; 7632dcc486SBarry Smith PetscMPIInt rank; 77ace3abfcSBarry Smith PetscBool iascii; 786849ba73SBarry Smith PetscErrorCode ierr; 795a5d4f66SBarry Smith 805a5d4f66SBarry Smith PetscFunctionBegin; 810700a824SBarry Smith PetscValidHeaderSpecific(mapping,IS_LTOGM_CLASSID,1); 823050cee2SBarry Smith if (!viewer) { 83ce94432eSBarry Smith ierr = PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject)mapping),&viewer);CHKERRQ(ierr); 843050cee2SBarry Smith } 850700a824SBarry Smith PetscValidHeaderSpecific(viewer,PETSC_VIEWER_CLASSID,2); 865a5d4f66SBarry Smith 87ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mapping),&rank);CHKERRQ(ierr); 88251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 8932077d6dSBarry Smith if (iascii) { 907b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_TRUE);CHKERRQ(ierr); 915a5d4f66SBarry Smith for (i=0; i<mapping->n; i++) { 92b0a32e0cSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] %d %d\n",rank,i,mapping->indices[i]);CHKERRQ(ierr); 936831982aSBarry Smith } 94b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 957b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_FALSE);CHKERRQ(ierr); 967b23a99aSBarry Smith } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Viewer type %s not supported for ISLocalToGlobalMapping",((PetscObject)viewer)->type_name); 975a5d4f66SBarry Smith PetscFunctionReturn(0); 985a5d4f66SBarry Smith } 995a5d4f66SBarry Smith 1004a2ae208SSatish Balay #undef __FUNCT__ 1014a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingCreateIS" 1021f428162SBarry Smith /*@ 1032bdab257SBarry Smith ISLocalToGlobalMappingCreateIS - Creates a mapping between a local (0 to n) 1042bdab257SBarry Smith ordering and a global parallel ordering. 1052bdab257SBarry Smith 1060f5bd95cSBarry Smith Not collective 107b9cd556bSLois Curfman McInnes 108a997ad1aSLois Curfman McInnes Input Parameter: 1098c03b21aSDmitry Karpeev . is - index set containing the global numbers for each local number 1102bdab257SBarry Smith 111a997ad1aSLois Curfman McInnes Output Parameter: 1122bdab257SBarry Smith . mapping - new mapping data structure 1132bdab257SBarry Smith 114a997ad1aSLois Curfman McInnes Level: advanced 115a997ad1aSLois Curfman McInnes 116273d9f13SBarry Smith Concepts: mapping^local to global 1172bdab257SBarry Smith 1182bdab257SBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreate() 1192bdab257SBarry Smith @*/ 1207087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingCreateIS(IS is,ISLocalToGlobalMapping *mapping) 1212bdab257SBarry Smith { 1226849ba73SBarry Smith PetscErrorCode ierr; 1235d0c19d7SBarry Smith PetscInt n; 1245d0c19d7SBarry Smith const PetscInt *indices; 1252bdab257SBarry Smith MPI_Comm comm; 1263a40ed3dSBarry Smith 1273a40ed3dSBarry Smith PetscFunctionBegin; 1280700a824SBarry Smith PetscValidHeaderSpecific(is,IS_CLASSID,1); 1294482741eSBarry Smith PetscValidPointer(mapping,2); 1302bdab257SBarry Smith 1312bdab257SBarry Smith ierr = PetscObjectGetComm((PetscObject)is,&comm);CHKERRQ(ierr); 1323b9aefa3SBarry Smith ierr = ISGetLocalSize(is,&n);CHKERRQ(ierr); 1332bdab257SBarry Smith ierr = ISGetIndices(is,&indices);CHKERRQ(ierr); 134d5ad8652SBarry Smith ierr = ISLocalToGlobalMappingCreate(comm,n,indices,PETSC_COPY_VALUES,mapping);CHKERRQ(ierr); 1352bdab257SBarry Smith ierr = ISRestoreIndices(is,&indices);CHKERRQ(ierr); 1363a40ed3dSBarry Smith PetscFunctionReturn(0); 1372bdab257SBarry Smith } 1385a5d4f66SBarry Smith 139a4d96a55SJed Brown #undef __FUNCT__ 140a4d96a55SJed Brown #define __FUNCT__ "ISLocalToGlobalMappingCreateSF" 141a4d96a55SJed Brown /*@C 142a4d96a55SJed Brown ISLocalToGlobalMappingCreateSF - Creates a mapping between a local (0 to n) 143a4d96a55SJed Brown ordering and a global parallel ordering. 144a4d96a55SJed Brown 145a4d96a55SJed Brown Collective 146a4d96a55SJed Brown 147a4d96a55SJed Brown Input Parameter: 148a4d96a55SJed Brown + sf - star forest mapping contiguous local indices to (rank, offset) 149a4d96a55SJed Brown - start - first global index on this process 150a4d96a55SJed Brown 151a4d96a55SJed Brown Output Parameter: 152a4d96a55SJed Brown . mapping - new mapping data structure 153a4d96a55SJed Brown 154a4d96a55SJed Brown Level: advanced 155a4d96a55SJed Brown 156a4d96a55SJed Brown Concepts: mapping^local to global 157a4d96a55SJed Brown 158a4d96a55SJed Brown .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreate(), ISLocalToGlobalMappingCreateIS() 159a4d96a55SJed Brown @*/ 160a4d96a55SJed Brown PetscErrorCode ISLocalToGlobalMappingCreateSF(PetscSF sf,PetscInt start,ISLocalToGlobalMapping *mapping) 161a4d96a55SJed Brown { 162a4d96a55SJed Brown PetscErrorCode ierr; 163a4d96a55SJed Brown PetscInt i,maxlocal,nroots,nleaves,*globals,*ltog; 164a4d96a55SJed Brown const PetscInt *ilocal; 165a4d96a55SJed Brown MPI_Comm comm; 166a4d96a55SJed Brown 167a4d96a55SJed Brown PetscFunctionBegin; 168a4d96a55SJed Brown PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 169a4d96a55SJed Brown PetscValidPointer(mapping,3); 170a4d96a55SJed Brown 171a4d96a55SJed Brown ierr = PetscObjectGetComm((PetscObject)sf,&comm);CHKERRQ(ierr); 1720298fd71SBarry Smith ierr = PetscSFGetGraph(sf,&nroots,&nleaves,&ilocal,NULL);CHKERRQ(ierr); 173f6e5521dSKarl Rupp if (ilocal) { 174f6e5521dSKarl Rupp for (i=0,maxlocal=0; i<nleaves; i++) maxlocal = PetscMax(maxlocal,ilocal[i]+1); 175f6e5521dSKarl Rupp } 176a4d96a55SJed Brown else maxlocal = nleaves; 177a4d96a55SJed Brown ierr = PetscMalloc(nroots*sizeof(PetscInt),&globals);CHKERRQ(ierr); 178a4d96a55SJed Brown ierr = PetscMalloc(maxlocal*sizeof(PetscInt),<og);CHKERRQ(ierr); 179a4d96a55SJed Brown for (i=0; i<nroots; i++) globals[i] = start + i; 180a4d96a55SJed Brown for (i=0; i<maxlocal; i++) ltog[i] = -1; 181a4d96a55SJed Brown ierr = PetscSFBcastBegin(sf,MPIU_INT,globals,ltog);CHKERRQ(ierr); 182a4d96a55SJed Brown ierr = PetscSFBcastEnd(sf,MPIU_INT,globals,ltog);CHKERRQ(ierr); 183a4d96a55SJed Brown ierr = ISLocalToGlobalMappingCreate(comm,maxlocal,ltog,PETSC_OWN_POINTER,mapping);CHKERRQ(ierr); 184a4d96a55SJed Brown ierr = PetscFree(globals);CHKERRQ(ierr); 185a4d96a55SJed Brown PetscFunctionReturn(0); 186a4d96a55SJed Brown } 187b46b645bSBarry Smith 1884a2ae208SSatish Balay #undef __FUNCT__ 1894a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingCreate" 190ba5bb76aSSatish Balay /*@ 19190f02eecSBarry Smith ISLocalToGlobalMappingCreate - Creates a mapping between a local (0 to n) 19290f02eecSBarry Smith ordering and a global parallel ordering. 1932362add9SBarry Smith 19489d82c54SBarry Smith Not Collective, but communicator may have more than one process 195b9cd556bSLois Curfman McInnes 1962362add9SBarry Smith Input Parameters: 19789d82c54SBarry Smith + comm - MPI communicator 19890f02eecSBarry Smith . n - the number of local elements 1999669e4d8SBarry Smith . indices - the global index for each local element, these do not need to be in increasing order (sorted) 200d5ad8652SBarry Smith - mode - see PetscCopyMode 2012362add9SBarry Smith 202a997ad1aSLois Curfman McInnes Output Parameter: 20390f02eecSBarry Smith . mapping - new mapping data structure 2042362add9SBarry Smith 205a997ad1aSLois Curfman McInnes Level: advanced 206a997ad1aSLois Curfman McInnes 207273d9f13SBarry Smith Concepts: mapping^local to global 2082362add9SBarry Smith 209d5ad8652SBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreateIS() 2102362add9SBarry Smith @*/ 2117087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingCreate(MPI_Comm cm,PetscInt n,const PetscInt indices[],PetscCopyMode mode,ISLocalToGlobalMapping *mapping) 2122362add9SBarry Smith { 2136849ba73SBarry Smith PetscErrorCode ierr; 21432dcc486SBarry Smith PetscInt *in; 215b46b645bSBarry Smith 216b46b645bSBarry Smith PetscFunctionBegin; 21773911063SBarry Smith if (n) PetscValidIntPointer(indices,3); 2184482741eSBarry Smith PetscValidPointer(mapping,4); 219b46b645bSBarry Smith 2200298fd71SBarry Smith *mapping = NULL; 221519f805aSKarl Rupp #if !defined(PETSC_USE_DYNAMIC_LIBRARIES) 2220298fd71SBarry Smith ierr = ISInitializePackage(NULL);CHKERRQ(ierr); 2238e58c17dSMatthew Knepley #endif 2242362add9SBarry Smith 22567c2884eSBarry Smith ierr = PetscHeaderCreate(*mapping,_p_ISLocalToGlobalMapping,int,IS_LTOGM_CLASSID,"ISLocalToGlobalMapping","Local to global mapping","IS", 22652e6d16bSBarry Smith cm,ISLocalToGlobalMappingDestroy,ISLocalToGlobalMappingView);CHKERRQ(ierr); 227d4bb536fSBarry Smith (*mapping)->n = n; 228d4bb536fSBarry Smith /* 229d4bb536fSBarry Smith Do not create the global to local mapping. This is only created if 230d4bb536fSBarry Smith ISGlobalToLocalMapping() is called 231d4bb536fSBarry Smith */ 232d4bb536fSBarry Smith (*mapping)->globals = 0; 233d5ad8652SBarry Smith if (mode == PETSC_COPY_VALUES) { 234d5ad8652SBarry Smith ierr = PetscMalloc(n*sizeof(PetscInt),&in);CHKERRQ(ierr); 235d5ad8652SBarry Smith ierr = PetscMemcpy(in,indices,n*sizeof(PetscInt));CHKERRQ(ierr); 236d5ad8652SBarry Smith ierr = PetscLogObjectMemory(*mapping,n*sizeof(PetscInt));CHKERRQ(ierr); 237d5ad8652SBarry Smith (*mapping)->indices = in; 238f6e5521dSKarl Rupp } else if (mode == PETSC_OWN_POINTER) (*mapping)->indices = (PetscInt*)indices; 239f6e5521dSKarl Rupp else SETERRQ(cm,PETSC_ERR_SUP,"Cannot currently use PETSC_USE_POINTER"); 2403a40ed3dSBarry Smith PetscFunctionReturn(0); 2412362add9SBarry Smith } 2422362add9SBarry Smith 2434a2ae208SSatish Balay #undef __FUNCT__ 2444a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingBlock" 245bce096a4SSatish Balay /*@ 246323b833fSBarry Smith ISLocalToGlobalMappingBlock - Creates a blocked index version of an 247323b833fSBarry Smith ISLocalToGlobalMapping that is appropriate for MatSetLocalToGlobalMappingBlock() 248323b833fSBarry Smith and VecSetLocalToGlobalMappingBlock(). 249323b833fSBarry Smith 250323b833fSBarry Smith Not Collective, but communicator may have more than one process 251323b833fSBarry Smith 252323b833fSBarry Smith Input Parameters: 253323b833fSBarry Smith + inmap - original point-wise mapping 254323b833fSBarry Smith - bs - block size 255323b833fSBarry Smith 256323b833fSBarry Smith Output Parameter: 25769eb54c3SBarry Smith . outmap - block based mapping; the indices are relative to BLOCKS, not individual vector or matrix entries. 258323b833fSBarry Smith 259323b833fSBarry Smith Level: advanced 260323b833fSBarry Smith 261323b833fSBarry Smith Concepts: mapping^local to global 262323b833fSBarry Smith 263323b833fSBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreate(), ISLocalToGlobalMappingCreateIS() 264323b833fSBarry Smith @*/ 2657087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingBlock(ISLocalToGlobalMapping inmap,PetscInt bs,ISLocalToGlobalMapping *outmap) 266323b833fSBarry Smith { 2676849ba73SBarry Smith PetscErrorCode ierr; 26832dcc486SBarry Smith PetscInt *ii,i,n; 269323b833fSBarry Smith 270323b833fSBarry Smith PetscFunctionBegin; 2710700a824SBarry Smith PetscValidHeaderSpecific(inmap,IS_LTOGM_CLASSID,1); 272b2beed0aSJed Brown PetscValidPointer(outmap,3); 273323b833fSBarry Smith if (bs > 1) { 274323b833fSBarry Smith n = inmap->n/bs; 275e32f2f54SBarry Smith if (n*bs != inmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Pointwise mapping length is not divisible by block size"); 27632dcc486SBarry Smith ierr = PetscMalloc(n*sizeof(PetscInt),&ii);CHKERRQ(ierr); 277f6e5521dSKarl Rupp for (i=0; i<n; i++) ii[i] = inmap->indices[bs*i]/bs; 278ce94432eSBarry Smith ierr = ISLocalToGlobalMappingCreate(PetscObjectComm((PetscObject)inmap),n,ii,PETSC_OWN_POINTER,outmap);CHKERRQ(ierr); 279323b833fSBarry Smith } else { 280323b833fSBarry Smith ierr = PetscObjectReference((PetscObject)inmap);CHKERRQ(ierr); 281c3122656SLisandro Dalcin *outmap = inmap; 282323b833fSBarry Smith } 283323b833fSBarry Smith PetscFunctionReturn(0); 284323b833fSBarry Smith } 285323b833fSBarry Smith 2864a2ae208SSatish Balay #undef __FUNCT__ 2878ab951edSJed Brown #define __FUNCT__ "ISLocalToGlobalMappingUnBlock" 288b2beed0aSJed Brown /*@ 289b2beed0aSJed Brown ISLocalToGlobalMappingUnBlock - Creates a scalar index version of a blocked 290b2beed0aSJed Brown ISLocalToGlobalMapping 291b2beed0aSJed Brown 292b2beed0aSJed Brown Not Collective, but communicator may have more than one process 293b2beed0aSJed Brown 294b2beed0aSJed Brown Input Parameter: 295b2beed0aSJed Brown + inmap - block based mapping; the indices are relative to BLOCKS, not individual vector or matrix entries. 296b2beed0aSJed Brown - bs - block size 297b2beed0aSJed Brown 298b2beed0aSJed Brown Output Parameter: 299b2beed0aSJed Brown . outmap - pointwise mapping 300b2beed0aSJed Brown 301b2beed0aSJed Brown Level: advanced 302b2beed0aSJed Brown 303b2beed0aSJed Brown Concepts: mapping^local to global 304b2beed0aSJed Brown 305b2beed0aSJed Brown .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreate(), ISLocalToGlobalMappingBlock() 306b2beed0aSJed Brown @*/ 3077087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingUnBlock(ISLocalToGlobalMapping inmap,PetscInt bs,ISLocalToGlobalMapping *outmap) 308b2beed0aSJed Brown { 309b2beed0aSJed Brown PetscErrorCode ierr; 310b2beed0aSJed Brown PetscInt *ii,i,n; 311b2beed0aSJed Brown 312b2beed0aSJed Brown PetscFunctionBegin; 313b2beed0aSJed Brown PetscValidHeaderSpecific(inmap,IS_LTOGM_CLASSID,1); 314b2beed0aSJed Brown PetscValidPointer(outmap,2); 315b2beed0aSJed Brown if (bs > 1) { 316b2beed0aSJed Brown n = inmap->n*bs; 317b2beed0aSJed Brown ierr = PetscMalloc(n*sizeof(PetscInt),&ii);CHKERRQ(ierr); 318f6e5521dSKarl Rupp for (i=0; i<n; i++) ii[i] = inmap->indices[i/bs]*bs + (i%bs); 319ce94432eSBarry Smith ierr = ISLocalToGlobalMappingCreate(PetscObjectComm((PetscObject)inmap),n,ii,PETSC_OWN_POINTER,outmap);CHKERRQ(ierr); 320b2beed0aSJed Brown } else { 321b2beed0aSJed Brown ierr = PetscObjectReference((PetscObject)inmap);CHKERRQ(ierr); 322b2beed0aSJed Brown *outmap = inmap; 323b2beed0aSJed Brown } 324b2beed0aSJed Brown PetscFunctionReturn(0); 325b2beed0aSJed Brown } 326b2beed0aSJed Brown 327b2beed0aSJed Brown #undef __FUNCT__ 3284a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingDestroy" 32990f02eecSBarry Smith /*@ 33090f02eecSBarry Smith ISLocalToGlobalMappingDestroy - Destroys a mapping between a local (0 to n) 33190f02eecSBarry Smith ordering and a global parallel ordering. 33290f02eecSBarry Smith 3330f5bd95cSBarry Smith Note Collective 334b9cd556bSLois Curfman McInnes 33590f02eecSBarry Smith Input Parameters: 33690f02eecSBarry Smith . mapping - mapping data structure 33790f02eecSBarry Smith 338a997ad1aSLois Curfman McInnes Level: advanced 339a997ad1aSLois Curfman McInnes 3403acfe500SLois Curfman McInnes .seealso: ISLocalToGlobalMappingCreate() 34190f02eecSBarry Smith @*/ 3426bf464f9SBarry Smith PetscErrorCode ISLocalToGlobalMappingDestroy(ISLocalToGlobalMapping *mapping) 34390f02eecSBarry Smith { 344dfbe8321SBarry Smith PetscErrorCode ierr; 3455fd66863SKarl Rupp 3463a40ed3dSBarry Smith PetscFunctionBegin; 3476bf464f9SBarry Smith if (!*mapping) PetscFunctionReturn(0); 3486bf464f9SBarry Smith PetscValidHeaderSpecific((*mapping),IS_LTOGM_CLASSID,1); 349997056adSBarry Smith if (--((PetscObject)(*mapping))->refct > 0) {*mapping = 0;PetscFunctionReturn(0);} 3506bf464f9SBarry Smith ierr = PetscFree((*mapping)->indices);CHKERRQ(ierr); 3516bf464f9SBarry Smith ierr = PetscFree((*mapping)->globals);CHKERRQ(ierr); 352d38fa0fbSBarry Smith ierr = PetscHeaderDestroy(mapping);CHKERRQ(ierr); 353992144d0SBarry Smith *mapping = 0; 3543a40ed3dSBarry Smith PetscFunctionReturn(0); 35590f02eecSBarry Smith } 35690f02eecSBarry Smith 3574a2ae208SSatish Balay #undef __FUNCT__ 3584a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingApplyIS" 35990f02eecSBarry Smith /*@ 3603acfe500SLois Curfman McInnes ISLocalToGlobalMappingApplyIS - Creates from an IS in the local numbering 3613acfe500SLois Curfman McInnes a new index set using the global numbering defined in an ISLocalToGlobalMapping 3623acfe500SLois Curfman McInnes context. 36390f02eecSBarry Smith 364b9cd556bSLois Curfman McInnes Not collective 365b9cd556bSLois Curfman McInnes 36690f02eecSBarry Smith Input Parameters: 367b9cd556bSLois Curfman McInnes + mapping - mapping between local and global numbering 368b9cd556bSLois Curfman McInnes - is - index set in local numbering 36990f02eecSBarry Smith 37090f02eecSBarry Smith Output Parameters: 37190f02eecSBarry Smith . newis - index set in global numbering 37290f02eecSBarry Smith 373a997ad1aSLois Curfman McInnes Level: advanced 374a997ad1aSLois Curfman McInnes 375273d9f13SBarry Smith Concepts: mapping^local to global 3763acfe500SLois Curfman McInnes 37790f02eecSBarry Smith .seealso: ISLocalToGlobalMappingApply(), ISLocalToGlobalMappingCreate(), 378d4bb536fSBarry Smith ISLocalToGlobalMappingDestroy(), ISGlobalToLocalMappingApply() 37990f02eecSBarry Smith @*/ 3807087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingApplyIS(ISLocalToGlobalMapping mapping,IS is,IS *newis) 38190f02eecSBarry Smith { 3826849ba73SBarry Smith PetscErrorCode ierr; 3835d0c19d7SBarry Smith PetscInt n,i,*idxmap,*idxout,Nmax = mapping->n; 3845d0c19d7SBarry Smith const PetscInt *idxin; 3853a40ed3dSBarry Smith 3863a40ed3dSBarry Smith PetscFunctionBegin; 3870700a824SBarry Smith PetscValidHeaderSpecific(mapping,IS_LTOGM_CLASSID,1); 3880700a824SBarry Smith PetscValidHeaderSpecific(is,IS_CLASSID,2); 3894482741eSBarry Smith PetscValidPointer(newis,3); 39090f02eecSBarry Smith 3913b9aefa3SBarry Smith ierr = ISGetLocalSize(is,&n);CHKERRQ(ierr); 39290f02eecSBarry Smith ierr = ISGetIndices(is,&idxin);CHKERRQ(ierr); 39390f02eecSBarry Smith idxmap = mapping->indices; 39490f02eecSBarry Smith 3957c334f02SBarry Smith ierr = PetscMalloc(n*sizeof(PetscInt),&idxout);CHKERRQ(ierr); 39690f02eecSBarry Smith for (i=0; i<n; i++) { 397e32f2f54SBarry Smith if (idxin[i] >= Nmax) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local index %d too large %d (max) at %d",idxin[i],Nmax-1,i); 39890f02eecSBarry Smith idxout[i] = idxmap[idxin[i]]; 39990f02eecSBarry Smith } 4003b9aefa3SBarry Smith ierr = ISRestoreIndices(is,&idxin);CHKERRQ(ierr); 40170b3c8c7SBarry Smith ierr = ISCreateGeneral(PETSC_COMM_SELF,n,idxout,PETSC_OWN_POINTER,newis);CHKERRQ(ierr); 4023a40ed3dSBarry Smith PetscFunctionReturn(0); 40390f02eecSBarry Smith } 40490f02eecSBarry Smith 405afcb2eb5SJed Brown #undef __FUNCT__ 406afcb2eb5SJed Brown #define __FUNCT__ "ISLocalToGlobalMappingApply" 407b89cb25eSSatish Balay /*@ 4083acfe500SLois Curfman McInnes ISLocalToGlobalMappingApply - Takes a list of integers in a local numbering 4093acfe500SLois Curfman McInnes and converts them to the global numbering. 41090f02eecSBarry Smith 411b9cd556bSLois Curfman McInnes Not collective 412b9cd556bSLois Curfman McInnes 413bb25748dSBarry Smith Input Parameters: 414b9cd556bSLois Curfman McInnes + mapping - the local to global mapping context 415bb25748dSBarry Smith . N - number of integers 416b9cd556bSLois Curfman McInnes - in - input indices in local numbering 417bb25748dSBarry Smith 418bb25748dSBarry Smith Output Parameter: 419bb25748dSBarry Smith . out - indices in global numbering 420bb25748dSBarry Smith 421b9cd556bSLois Curfman McInnes Notes: 422b9cd556bSLois Curfman McInnes The in and out array parameters may be identical. 423d4bb536fSBarry Smith 424a997ad1aSLois Curfman McInnes Level: advanced 425a997ad1aSLois Curfman McInnes 426bb25748dSBarry Smith .seealso: ISLocalToGlobalMappingCreate(),ISLocalToGlobalMappingDestroy(), 4270752156aSBarry Smith ISLocalToGlobalMappingApplyIS(),AOCreateBasic(),AOApplicationToPetsc(), 428d4bb536fSBarry Smith AOPetscToApplication(), ISGlobalToLocalMappingApply() 429bb25748dSBarry Smith 430273d9f13SBarry Smith Concepts: mapping^local to global 431afcb2eb5SJed Brown @*/ 432afcb2eb5SJed Brown PetscErrorCode ISLocalToGlobalMappingApply(ISLocalToGlobalMapping mapping,PetscInt N,const PetscInt in[],PetscInt out[]) 433afcb2eb5SJed Brown { 434afcb2eb5SJed Brown PetscInt i,Nmax = mapping->n; 435afcb2eb5SJed Brown const PetscInt *idx = mapping->indices; 436d4bb536fSBarry Smith 437afcb2eb5SJed Brown PetscFunctionBegin; 438afcb2eb5SJed Brown for (i=0; i<N; i++) { 439afcb2eb5SJed Brown if (in[i] < 0) { 440afcb2eb5SJed Brown out[i] = in[i]; 441afcb2eb5SJed Brown continue; 442afcb2eb5SJed Brown } 443afcb2eb5SJed Brown if (in[i] >= Nmax) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local index %D too large %D (max) at %D",in[i],Nmax,i); 444afcb2eb5SJed Brown out[i] = idx[in[i]]; 445afcb2eb5SJed Brown } 446afcb2eb5SJed Brown PetscFunctionReturn(0); 447afcb2eb5SJed Brown } 448d4bb536fSBarry Smith 449d4bb536fSBarry Smith /* -----------------------------------------------------------------------------------------*/ 450d4bb536fSBarry Smith 4514a2ae208SSatish Balay #undef __FUNCT__ 4524a2ae208SSatish Balay #define __FUNCT__ "ISGlobalToLocalMappingSetUp_Private" 453d4bb536fSBarry Smith /* 454d4bb536fSBarry Smith Creates the global fields in the ISLocalToGlobalMapping structure 455d4bb536fSBarry Smith */ 4566849ba73SBarry Smith static PetscErrorCode ISGlobalToLocalMappingSetUp_Private(ISLocalToGlobalMapping mapping) 457d4bb536fSBarry Smith { 4586849ba73SBarry Smith PetscErrorCode ierr; 45932dcc486SBarry Smith PetscInt i,*idx = mapping->indices,n = mapping->n,end,start,*globals; 460d4bb536fSBarry Smith 4613a40ed3dSBarry Smith PetscFunctionBegin; 462d4bb536fSBarry Smith end = 0; 463ec268f7cSJed Brown start = PETSC_MAX_INT; 464d4bb536fSBarry Smith 465d4bb536fSBarry Smith for (i=0; i<n; i++) { 466d4bb536fSBarry Smith if (idx[i] < 0) continue; 467d4bb536fSBarry Smith if (idx[i] < start) start = idx[i]; 468d4bb536fSBarry Smith if (idx[i] > end) end = idx[i]; 469d4bb536fSBarry Smith } 470d4bb536fSBarry Smith if (start > end) {start = 0; end = -1;} 471d4bb536fSBarry Smith mapping->globalstart = start; 472d4bb536fSBarry Smith mapping->globalend = end; 473d4bb536fSBarry Smith 47432dcc486SBarry Smith ierr = PetscMalloc((end-start+2)*sizeof(PetscInt),&globals);CHKERRQ(ierr); 475b0a32e0cSBarry Smith mapping->globals = globals; 476f6e5521dSKarl Rupp for (i=0; i<end-start+1; i++) globals[i] = -1; 477d4bb536fSBarry Smith for (i=0; i<n; i++) { 478d4bb536fSBarry Smith if (idx[i] < 0) continue; 479d4bb536fSBarry Smith globals[idx[i] - start] = i; 480d4bb536fSBarry Smith } 481d4bb536fSBarry Smith 48252e6d16bSBarry Smith ierr = PetscLogObjectMemory(mapping,(end-start+1)*sizeof(PetscInt));CHKERRQ(ierr); 4833a40ed3dSBarry Smith PetscFunctionReturn(0); 484d4bb536fSBarry Smith } 485d4bb536fSBarry Smith 4864a2ae208SSatish Balay #undef __FUNCT__ 4874a2ae208SSatish Balay #define __FUNCT__ "ISGlobalToLocalMappingApply" 488d4bb536fSBarry Smith /*@ 489a997ad1aSLois Curfman McInnes ISGlobalToLocalMappingApply - Provides the local numbering for a list of integers 490a997ad1aSLois Curfman McInnes specified with a global numbering. 491d4bb536fSBarry Smith 492b9cd556bSLois Curfman McInnes Not collective 493b9cd556bSLois Curfman McInnes 494d4bb536fSBarry Smith Input Parameters: 495b9cd556bSLois Curfman McInnes + mapping - mapping between local and global numbering 496d4bb536fSBarry Smith . type - IS_GTOLM_MASK - replaces global indices with no local value with -1 497d4bb536fSBarry Smith IS_GTOLM_DROP - drops the indices with no local value from the output list 498d4bb536fSBarry Smith . n - number of global indices to map 499b9cd556bSLois Curfman McInnes - idx - global indices to map 500d4bb536fSBarry Smith 501d4bb536fSBarry Smith Output Parameters: 502b9cd556bSLois Curfman McInnes + nout - number of indices in output array (if type == IS_GTOLM_MASK then nout = n) 503b9cd556bSLois Curfman McInnes - idxout - local index of each global index, one must pass in an array long enough 504e182c471SBarry Smith to hold all the indices. You can call ISGlobalToLocalMappingApply() with 5050298fd71SBarry Smith idxout == NULL to determine the required length (returned in nout) 506e182c471SBarry Smith and then allocate the required space and call ISGlobalToLocalMappingApply() 507e182c471SBarry Smith a second time to set the values. 508d4bb536fSBarry Smith 509b9cd556bSLois Curfman McInnes Notes: 5100298fd71SBarry Smith Either nout or idxout may be NULL. idx and idxout may be identical. 511d4bb536fSBarry Smith 5120f5bd95cSBarry Smith This is not scalable in memory usage. Each processor requires O(Nglobal) size 5130f5bd95cSBarry Smith array to compute these. 5140f5bd95cSBarry Smith 515a997ad1aSLois Curfman McInnes Level: advanced 516a997ad1aSLois Curfman McInnes 51732fd6b96SBarry Smith Developer Note: The manual page states that idx and idxout may be identical but the calling 51832fd6b96SBarry Smith sequence declares idx as const so it cannot be the same as idxout. 51932fd6b96SBarry Smith 520273d9f13SBarry Smith Concepts: mapping^global to local 521d4bb536fSBarry Smith 522d4bb536fSBarry Smith .seealso: ISLocalToGlobalMappingApply(), ISLocalToGlobalMappingCreate(), 523d4bb536fSBarry Smith ISLocalToGlobalMappingDestroy() 524d4bb536fSBarry Smith @*/ 5257087cfbeSBarry Smith PetscErrorCode ISGlobalToLocalMappingApply(ISLocalToGlobalMapping mapping,ISGlobalToLocalMappingType type, 52632dcc486SBarry Smith PetscInt n,const PetscInt idx[],PetscInt *nout,PetscInt idxout[]) 527d4bb536fSBarry Smith { 52832dcc486SBarry Smith PetscInt i,*globals,nf = 0,tmp,start,end; 5296849ba73SBarry Smith PetscErrorCode ierr; 530d4bb536fSBarry Smith 5313a40ed3dSBarry Smith PetscFunctionBegin; 5320700a824SBarry Smith PetscValidHeaderSpecific(mapping,IS_LTOGM_CLASSID,1); 533d4bb536fSBarry Smith if (!mapping->globals) { 534d4bb536fSBarry Smith ierr = ISGlobalToLocalMappingSetUp_Private(mapping);CHKERRQ(ierr); 535d4bb536fSBarry Smith } 536d4bb536fSBarry Smith globals = mapping->globals; 537d4bb536fSBarry Smith start = mapping->globalstart; 538d4bb536fSBarry Smith end = mapping->globalend; 539d4bb536fSBarry Smith 540d4bb536fSBarry Smith if (type == IS_GTOLM_MASK) { 541d4bb536fSBarry Smith if (idxout) { 542d4bb536fSBarry Smith for (i=0; i<n; i++) { 543d4bb536fSBarry Smith if (idx[i] < 0) idxout[i] = idx[i]; 544d4bb536fSBarry Smith else if (idx[i] < start) idxout[i] = -1; 545d4bb536fSBarry Smith else if (idx[i] > end) idxout[i] = -1; 546d4bb536fSBarry Smith else idxout[i] = globals[idx[i] - start]; 547d4bb536fSBarry Smith } 548d4bb536fSBarry Smith } 549d4bb536fSBarry Smith if (nout) *nout = n; 550d4bb536fSBarry Smith } else { 551d4bb536fSBarry Smith if (idxout) { 552d4bb536fSBarry Smith for (i=0; i<n; i++) { 553d4bb536fSBarry Smith if (idx[i] < 0) continue; 554d4bb536fSBarry Smith if (idx[i] < start) continue; 555d4bb536fSBarry Smith if (idx[i] > end) continue; 556d4bb536fSBarry Smith tmp = globals[idx[i] - start]; 557d4bb536fSBarry Smith if (tmp < 0) continue; 558d4bb536fSBarry Smith idxout[nf++] = tmp; 559d4bb536fSBarry Smith } 560d4bb536fSBarry Smith } else { 561d4bb536fSBarry Smith for (i=0; i<n; i++) { 562d4bb536fSBarry Smith if (idx[i] < 0) continue; 563d4bb536fSBarry Smith if (idx[i] < start) continue; 564d4bb536fSBarry Smith if (idx[i] > end) continue; 565d4bb536fSBarry Smith tmp = globals[idx[i] - start]; 566d4bb536fSBarry Smith if (tmp < 0) continue; 567d4bb536fSBarry Smith nf++; 568d4bb536fSBarry Smith } 569d4bb536fSBarry Smith } 570d4bb536fSBarry Smith if (nout) *nout = nf; 571d4bb536fSBarry Smith } 5723a40ed3dSBarry Smith PetscFunctionReturn(0); 573d4bb536fSBarry Smith } 57490f02eecSBarry Smith 5754a2ae208SSatish Balay #undef __FUNCT__ 5764a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingGetInfo" 57789d82c54SBarry Smith /*@C 57889d82c54SBarry Smith ISLocalToGlobalMappingGetInfo - Gets the neighbor information for each processor and 57989d82c54SBarry Smith each index shared by more than one processor 58089d82c54SBarry Smith 58189d82c54SBarry Smith Collective on ISLocalToGlobalMapping 58289d82c54SBarry Smith 58389d82c54SBarry Smith Input Parameters: 58489d82c54SBarry Smith . mapping - the mapping from local to global indexing 58589d82c54SBarry Smith 58689d82c54SBarry Smith Output Parameter: 58789d82c54SBarry Smith + nproc - number of processors that are connected to this one 58889d82c54SBarry Smith . proc - neighboring processors 58907b52d57SBarry Smith . numproc - number of indices for each subdomain (processor) 5903463a7baSJed Brown - indices - indices of nodes (in local numbering) shared with neighbors (sorted by global numbering) 59189d82c54SBarry Smith 59289d82c54SBarry Smith Level: advanced 59389d82c54SBarry Smith 594273d9f13SBarry Smith Concepts: mapping^local to global 59589d82c54SBarry Smith 5962cfcea29SBarry Smith Fortran Usage: 5972cfcea29SBarry Smith $ ISLocalToGlobalMpngGetInfoSize(ISLocalToGlobalMapping,PetscInt nproc,PetscInt numprocmax,ierr) followed by 5982cfcea29SBarry Smith $ ISLocalToGlobalMappingGetInfo(ISLocalToGlobalMapping,PetscInt nproc, PetscInt procs[nproc],PetscInt numprocs[nproc], 5992cfcea29SBarry Smith PetscInt indices[nproc][numprocmax],ierr) 6002cfcea29SBarry Smith There is no ISLocalToGlobalMappingRestoreInfo() in Fortran. You must make sure that procs[], numprocs[] and 6012cfcea29SBarry Smith indices[][] are large enough arrays, either by allocating them dynamically or defining static ones large enough. 6022cfcea29SBarry Smith 6032cfcea29SBarry Smith 60407b52d57SBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreateIS(), ISLocalToGlobalMappingCreate(), 60507b52d57SBarry Smith ISLocalToGlobalMappingRestoreInfo() 60689d82c54SBarry Smith @*/ 6077087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingGetInfo(ISLocalToGlobalMapping mapping,PetscInt *nproc,PetscInt *procs[],PetscInt *numprocs[],PetscInt **indices[]) 60889d82c54SBarry Smith { 6096849ba73SBarry Smith PetscErrorCode ierr; 61097f1f81fSBarry Smith PetscMPIInt size,rank,tag1,tag2,tag3,*len,*source,imdex; 61132dcc486SBarry Smith PetscInt i,n = mapping->n,Ng,ng,max = 0,*lindices = mapping->indices; 61232dcc486SBarry Smith PetscInt *nprocs,*owner,nsends,*sends,j,*starts,nmax,nrecvs,*recvs,proc; 61397f1f81fSBarry Smith PetscInt cnt,scale,*ownedsenders,*nownedsenders,rstart,nowned; 61432dcc486SBarry Smith PetscInt node,nownedm,nt,*sends2,nsends2,*starts2,*lens2,*dest,nrecvs2,*starts3,*recvs2,k,*bprocs,*tmp; 61532dcc486SBarry Smith PetscInt first_procs,first_numprocs,*first_indices; 61689d82c54SBarry Smith MPI_Request *recv_waits,*send_waits; 61730dcb7c9SBarry Smith MPI_Status recv_status,*send_status,*recv_statuses; 618ce94432eSBarry Smith MPI_Comm comm; 619ace3abfcSBarry Smith PetscBool debug = PETSC_FALSE; 62089d82c54SBarry Smith 62189d82c54SBarry Smith PetscFunctionBegin; 6220700a824SBarry Smith PetscValidHeaderSpecific(mapping,IS_LTOGM_CLASSID,1); 623ce94432eSBarry Smith ierr = PetscObjectGetComm((PetscObject)mapping,&comm);CHKERRQ(ierr); 62424cf384cSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 62524cf384cSBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 62624cf384cSBarry Smith if (size == 1) { 62724cf384cSBarry Smith *nproc = 0; 6280298fd71SBarry Smith *procs = NULL; 62932dcc486SBarry Smith ierr = PetscMalloc(sizeof(PetscInt),numprocs);CHKERRQ(ierr); 6301e2105dcSBarry Smith (*numprocs)[0] = 0; 63132dcc486SBarry Smith ierr = PetscMalloc(sizeof(PetscInt*),indices);CHKERRQ(ierr); 6320298fd71SBarry Smith (*indices)[0] = NULL; 63324cf384cSBarry Smith PetscFunctionReturn(0); 63424cf384cSBarry Smith } 63524cf384cSBarry Smith 6360298fd71SBarry Smith ierr = PetscOptionsGetBool(NULL,"-islocaltoglobalmappinggetinfo_debug",&debug,NULL);CHKERRQ(ierr); 63707b52d57SBarry Smith 6383677ff5aSBarry Smith /* 6393677ff5aSBarry Smith Notes on ISLocalToGlobalMappingGetInfo 6403677ff5aSBarry Smith 6413677ff5aSBarry Smith globally owned node - the nodes that have been assigned to this processor in global 6423677ff5aSBarry Smith numbering, just for this routine. 6433677ff5aSBarry Smith 6443677ff5aSBarry Smith nontrivial globally owned node - node assigned to this processor that is on a subdomain 6453677ff5aSBarry Smith boundary (i.e. is has more than one local owner) 6463677ff5aSBarry Smith 6473677ff5aSBarry Smith locally owned node - node that exists on this processors subdomain 6483677ff5aSBarry Smith 6493677ff5aSBarry Smith nontrivial locally owned node - node that is not in the interior (i.e. has more than one 6503677ff5aSBarry Smith local subdomain 6513677ff5aSBarry Smith */ 65224cf384cSBarry Smith ierr = PetscObjectGetNewTag((PetscObject)mapping,&tag1);CHKERRQ(ierr); 65324cf384cSBarry Smith ierr = PetscObjectGetNewTag((PetscObject)mapping,&tag2);CHKERRQ(ierr); 65424cf384cSBarry Smith ierr = PetscObjectGetNewTag((PetscObject)mapping,&tag3);CHKERRQ(ierr); 65589d82c54SBarry Smith 65689d82c54SBarry Smith for (i=0; i<n; i++) { 65789d82c54SBarry Smith if (lindices[i] > max) max = lindices[i]; 65889d82c54SBarry Smith } 65932dcc486SBarry Smith ierr = MPI_Allreduce(&max,&Ng,1,MPIU_INT,MPI_MAX,comm);CHKERRQ(ierr); 66078058e43SBarry Smith Ng++; 66189d82c54SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 66289d82c54SBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 663bc8ff85bSBarry Smith scale = Ng/size + 1; 664a2e34c3dSBarry Smith ng = scale; if (rank == size-1) ng = Ng - scale*(size-1); ng = PetscMax(1,ng); 665caba0dd0SBarry Smith rstart = scale*rank; 66689d82c54SBarry Smith 66789d82c54SBarry Smith /* determine ownership ranges of global indices */ 6687c334f02SBarry Smith ierr = PetscMalloc(2*size*sizeof(PetscInt),&nprocs);CHKERRQ(ierr); 66932dcc486SBarry Smith ierr = PetscMemzero(nprocs,2*size*sizeof(PetscInt));CHKERRQ(ierr); 67089d82c54SBarry Smith 67189d82c54SBarry Smith /* determine owners of each local node */ 6727c334f02SBarry Smith ierr = PetscMalloc(n*sizeof(PetscInt),&owner);CHKERRQ(ierr); 67389d82c54SBarry Smith for (i=0; i<n; i++) { 6743677ff5aSBarry Smith proc = lindices[i]/scale; /* processor that globally owns this index */ 67527c402fcSBarry Smith nprocs[2*proc+1] = 1; /* processor globally owns at least one of ours */ 6763677ff5aSBarry Smith owner[i] = proc; 67727c402fcSBarry Smith nprocs[2*proc]++; /* count of how many that processor globally owns of ours */ 67889d82c54SBarry Smith } 67927c402fcSBarry Smith nsends = 0; for (i=0; i<size; i++) nsends += nprocs[2*i+1]; 6801e2582c4SBarry Smith ierr = PetscInfo1(mapping,"Number of global owners for my local data %d\n",nsends);CHKERRQ(ierr); 68189d82c54SBarry Smith 68289d82c54SBarry Smith /* inform other processors of number of messages and max length*/ 68327c402fcSBarry Smith ierr = PetscMaxSum(comm,nprocs,&nmax,&nrecvs);CHKERRQ(ierr); 6841e2582c4SBarry Smith ierr = PetscInfo1(mapping,"Number of local owners for my global data %d\n",nrecvs);CHKERRQ(ierr); 68589d82c54SBarry Smith 68689d82c54SBarry Smith /* post receives for owned rows */ 68732dcc486SBarry Smith ierr = PetscMalloc((2*nrecvs+1)*(nmax+1)*sizeof(PetscInt),&recvs);CHKERRQ(ierr); 688b0a32e0cSBarry Smith ierr = PetscMalloc((nrecvs+1)*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr); 68989d82c54SBarry Smith for (i=0; i<nrecvs; i++) { 69032dcc486SBarry Smith ierr = MPI_Irecv(recvs+2*nmax*i,2*nmax,MPIU_INT,MPI_ANY_SOURCE,tag1,comm,recv_waits+i);CHKERRQ(ierr); 69189d82c54SBarry Smith } 69289d82c54SBarry Smith 69389d82c54SBarry Smith /* pack messages containing lists of local nodes to owners */ 69432dcc486SBarry Smith ierr = PetscMalloc((2*n+1)*sizeof(PetscInt),&sends);CHKERRQ(ierr); 69532dcc486SBarry Smith ierr = PetscMalloc((size+1)*sizeof(PetscInt),&starts);CHKERRQ(ierr); 69689d82c54SBarry Smith starts[0] = 0; 697f6e5521dSKarl Rupp for (i=1; i<size; i++) starts[i] = starts[i-1] + 2*nprocs[2*i-2]; 69889d82c54SBarry Smith for (i=0; i<n; i++) { 69989d82c54SBarry Smith sends[starts[owner[i]]++] = lindices[i]; 70030dcb7c9SBarry Smith sends[starts[owner[i]]++] = i; 70189d82c54SBarry Smith } 70289d82c54SBarry Smith ierr = PetscFree(owner);CHKERRQ(ierr); 70389d82c54SBarry Smith starts[0] = 0; 704f6e5521dSKarl Rupp for (i=1; i<size; i++) starts[i] = starts[i-1] + 2*nprocs[2*i-2]; 70589d82c54SBarry Smith 70689d82c54SBarry Smith /* send the messages */ 707b0a32e0cSBarry Smith ierr = PetscMalloc((nsends+1)*sizeof(MPI_Request),&send_waits);CHKERRQ(ierr); 70832dcc486SBarry Smith ierr = PetscMalloc((nsends+1)*sizeof(PetscInt),&dest);CHKERRQ(ierr); 70989d82c54SBarry Smith cnt = 0; 71089d82c54SBarry Smith for (i=0; i<size; i++) { 71127c402fcSBarry Smith if (nprocs[2*i]) { 71232dcc486SBarry Smith ierr = MPI_Isend(sends+starts[i],2*nprocs[2*i],MPIU_INT,i,tag1,comm,send_waits+cnt);CHKERRQ(ierr); 71330dcb7c9SBarry Smith dest[cnt] = i; 71489d82c54SBarry Smith cnt++; 71589d82c54SBarry Smith } 71689d82c54SBarry Smith } 71789d82c54SBarry Smith ierr = PetscFree(starts);CHKERRQ(ierr); 71889d82c54SBarry Smith 71989d82c54SBarry Smith /* wait on receives */ 72097f1f81fSBarry Smith ierr = PetscMalloc((nrecvs+1)*sizeof(PetscMPIInt),&source);CHKERRQ(ierr); 72197f1f81fSBarry Smith ierr = PetscMalloc((nrecvs+1)*sizeof(PetscMPIInt),&len);CHKERRQ(ierr); 72289d82c54SBarry Smith cnt = nrecvs; 72332dcc486SBarry Smith ierr = PetscMalloc((ng+1)*sizeof(PetscInt),&nownedsenders);CHKERRQ(ierr); 72432dcc486SBarry Smith ierr = PetscMemzero(nownedsenders,ng*sizeof(PetscInt));CHKERRQ(ierr); 72589d82c54SBarry Smith while (cnt) { 72689d82c54SBarry Smith ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr); 72789d82c54SBarry Smith /* unpack receives into our local space */ 72832dcc486SBarry Smith ierr = MPI_Get_count(&recv_status,MPIU_INT,&len[imdex]);CHKERRQ(ierr); 72989d82c54SBarry Smith source[imdex] = recv_status.MPI_SOURCE; 73030dcb7c9SBarry Smith len[imdex] = len[imdex]/2; 731caba0dd0SBarry Smith /* count how many local owners for each of my global owned indices */ 73230dcb7c9SBarry Smith for (i=0; i<len[imdex]; i++) nownedsenders[recvs[2*imdex*nmax+2*i]-rstart]++; 73389d82c54SBarry Smith cnt--; 73489d82c54SBarry Smith } 73589d82c54SBarry Smith ierr = PetscFree(recv_waits);CHKERRQ(ierr); 73689d82c54SBarry Smith 73730dcb7c9SBarry Smith /* count how many globally owned indices are on an edge multiplied by how many processors own them. */ 738bc8ff85bSBarry Smith nowned = 0; 739bc8ff85bSBarry Smith nownedm = 0; 740bc8ff85bSBarry Smith for (i=0; i<ng; i++) { 741bc8ff85bSBarry Smith if (nownedsenders[i] > 1) {nownedm += nownedsenders[i]; nowned++;} 742bc8ff85bSBarry Smith } 743bc8ff85bSBarry Smith 744bc8ff85bSBarry Smith /* create single array to contain rank of all local owners of each globally owned index */ 74532dcc486SBarry Smith ierr = PetscMalloc((nownedm+1)*sizeof(PetscInt),&ownedsenders);CHKERRQ(ierr); 74632dcc486SBarry Smith ierr = PetscMalloc((ng+1)*sizeof(PetscInt),&starts);CHKERRQ(ierr); 747bc8ff85bSBarry Smith starts[0] = 0; 748bc8ff85bSBarry Smith for (i=1; i<ng; i++) { 749bc8ff85bSBarry Smith if (nownedsenders[i-1] > 1) starts[i] = starts[i-1] + nownedsenders[i-1]; 750bc8ff85bSBarry Smith else starts[i] = starts[i-1]; 751bc8ff85bSBarry Smith } 752bc8ff85bSBarry Smith 75330dcb7c9SBarry Smith /* for each nontrival globally owned node list all arriving processors */ 754bc8ff85bSBarry Smith for (i=0; i<nrecvs; i++) { 755bc8ff85bSBarry Smith for (j=0; j<len[i]; j++) { 75630dcb7c9SBarry Smith node = recvs[2*i*nmax+2*j]-rstart; 757f6e5521dSKarl Rupp if (nownedsenders[node] > 1) ownedsenders[starts[node]++] = source[i]; 758bc8ff85bSBarry Smith } 759bc8ff85bSBarry Smith } 760bc8ff85bSBarry Smith 76107b52d57SBarry Smith if (debug) { /* ----------------------------------- */ 76230dcb7c9SBarry Smith starts[0] = 0; 76330dcb7c9SBarry Smith for (i=1; i<ng; i++) { 76430dcb7c9SBarry Smith if (nownedsenders[i-1] > 1) starts[i] = starts[i-1] + nownedsenders[i-1]; 76530dcb7c9SBarry Smith else starts[i] = starts[i-1]; 76630dcb7c9SBarry Smith } 76730dcb7c9SBarry Smith for (i=0; i<ng; i++) { 76830dcb7c9SBarry Smith if (nownedsenders[i] > 1) { 76930dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"[%d] global node %d local owner processors: ",rank,i+rstart);CHKERRQ(ierr); 77030dcb7c9SBarry Smith for (j=0; j<nownedsenders[i]; j++) { 77130dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"%d ",ownedsenders[starts[i]+j]);CHKERRQ(ierr); 77230dcb7c9SBarry Smith } 77330dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"\n");CHKERRQ(ierr); 77430dcb7c9SBarry Smith } 77530dcb7c9SBarry Smith } 77630dcb7c9SBarry Smith ierr = PetscSynchronizedFlush(comm);CHKERRQ(ierr); 77707b52d57SBarry Smith } /* ----------------------------------- */ 77830dcb7c9SBarry Smith 7793677ff5aSBarry Smith /* wait on original sends */ 7803a96401aSBarry Smith if (nsends) { 781b0a32e0cSBarry Smith ierr = PetscMalloc(nsends*sizeof(MPI_Status),&send_status);CHKERRQ(ierr); 7823a96401aSBarry Smith ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr); 7833a96401aSBarry Smith ierr = PetscFree(send_status);CHKERRQ(ierr); 7843a96401aSBarry Smith } 78589d82c54SBarry Smith ierr = PetscFree(send_waits);CHKERRQ(ierr); 7863a96401aSBarry Smith ierr = PetscFree(sends);CHKERRQ(ierr); 7873677ff5aSBarry Smith ierr = PetscFree(nprocs);CHKERRQ(ierr); 7883677ff5aSBarry Smith 7893677ff5aSBarry Smith /* pack messages to send back to local owners */ 79030dcb7c9SBarry Smith starts[0] = 0; 79130dcb7c9SBarry Smith for (i=1; i<ng; i++) { 79230dcb7c9SBarry Smith if (nownedsenders[i-1] > 1) starts[i] = starts[i-1] + nownedsenders[i-1]; 79330dcb7c9SBarry Smith else starts[i] = starts[i-1]; 79430dcb7c9SBarry Smith } 79530dcb7c9SBarry Smith nsends2 = nrecvs; 79632dcc486SBarry Smith ierr = PetscMalloc((nsends2+1)*sizeof(PetscInt),&nprocs);CHKERRQ(ierr); /* length of each message */ 79730dcb7c9SBarry Smith for (i=0; i<nrecvs; i++) { 79830dcb7c9SBarry Smith nprocs[i] = 1; 79930dcb7c9SBarry Smith for (j=0; j<len[i]; j++) { 80030dcb7c9SBarry Smith node = recvs[2*i*nmax+2*j]-rstart; 801f6e5521dSKarl Rupp if (nownedsenders[node] > 1) nprocs[i] += 2 + nownedsenders[node]; 80230dcb7c9SBarry Smith } 80330dcb7c9SBarry Smith } 804f6e5521dSKarl Rupp nt = 0; 805f6e5521dSKarl Rupp for (i=0; i<nsends2; i++) nt += nprocs[i]; 806f6e5521dSKarl Rupp 80732dcc486SBarry Smith ierr = PetscMalloc((nt+1)*sizeof(PetscInt),&sends2);CHKERRQ(ierr); 80832dcc486SBarry Smith ierr = PetscMalloc((nsends2+1)*sizeof(PetscInt),&starts2);CHKERRQ(ierr); 809f6e5521dSKarl Rupp 810f6e5521dSKarl Rupp starts2[0] = 0; 811f6e5521dSKarl Rupp for (i=1; i<nsends2; i++) starts2[i] = starts2[i-1] + nprocs[i-1]; 81230dcb7c9SBarry Smith /* 81330dcb7c9SBarry Smith Each message is 1 + nprocs[i] long, and consists of 81430dcb7c9SBarry Smith (0) the number of nodes being sent back 81530dcb7c9SBarry Smith (1) the local node number, 81630dcb7c9SBarry Smith (2) the number of processors sharing it, 81730dcb7c9SBarry Smith (3) the processors sharing it 81830dcb7c9SBarry Smith */ 81930dcb7c9SBarry Smith for (i=0; i<nsends2; i++) { 82030dcb7c9SBarry Smith cnt = 1; 82130dcb7c9SBarry Smith sends2[starts2[i]] = 0; 82230dcb7c9SBarry Smith for (j=0; j<len[i]; j++) { 82330dcb7c9SBarry Smith node = recvs[2*i*nmax+2*j]-rstart; 82430dcb7c9SBarry Smith if (nownedsenders[node] > 1) { 82530dcb7c9SBarry Smith sends2[starts2[i]]++; 82630dcb7c9SBarry Smith sends2[starts2[i]+cnt++] = recvs[2*i*nmax+2*j+1]; 82730dcb7c9SBarry Smith sends2[starts2[i]+cnt++] = nownedsenders[node]; 82832dcc486SBarry Smith ierr = PetscMemcpy(&sends2[starts2[i]+cnt],&ownedsenders[starts[node]],nownedsenders[node]*sizeof(PetscInt));CHKERRQ(ierr); 82930dcb7c9SBarry Smith cnt += nownedsenders[node]; 83030dcb7c9SBarry Smith } 83130dcb7c9SBarry Smith } 83230dcb7c9SBarry Smith } 83330dcb7c9SBarry Smith 83430dcb7c9SBarry Smith /* receive the message lengths */ 83530dcb7c9SBarry Smith nrecvs2 = nsends; 83632dcc486SBarry Smith ierr = PetscMalloc((nrecvs2+1)*sizeof(PetscInt),&lens2);CHKERRQ(ierr); 83732dcc486SBarry Smith ierr = PetscMalloc((nrecvs2+1)*sizeof(PetscInt),&starts3);CHKERRQ(ierr); 838d44834fbSBarry Smith ierr = PetscMalloc((nrecvs2+1)*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr); 83930dcb7c9SBarry Smith for (i=0; i<nrecvs2; i++) { 840d44834fbSBarry Smith ierr = MPI_Irecv(&lens2[i],1,MPIU_INT,dest[i],tag2,comm,recv_waits+i);CHKERRQ(ierr); 84130dcb7c9SBarry Smith } 842d44834fbSBarry Smith 8438a8e0b3aSBarry Smith /* send the message lengths */ 8448a8e0b3aSBarry Smith for (i=0; i<nsends2; i++) { 8458a8e0b3aSBarry Smith ierr = MPI_Send(&nprocs[i],1,MPIU_INT,source[i],tag2,comm);CHKERRQ(ierr); 8468a8e0b3aSBarry Smith } 8478a8e0b3aSBarry Smith 848d44834fbSBarry Smith /* wait on receives of lens */ 8490c468ba9SBarry Smith if (nrecvs2) { 8500c468ba9SBarry Smith ierr = PetscMalloc(nrecvs2*sizeof(MPI_Status),&recv_statuses);CHKERRQ(ierr); 851d44834fbSBarry Smith ierr = MPI_Waitall(nrecvs2,recv_waits,recv_statuses);CHKERRQ(ierr); 852d44834fbSBarry Smith ierr = PetscFree(recv_statuses);CHKERRQ(ierr); 8530c468ba9SBarry Smith } 854a2ea699eSBarry Smith ierr = PetscFree(recv_waits);CHKERRQ(ierr); 855d44834fbSBarry Smith 85630dcb7c9SBarry Smith starts3[0] = 0; 857d44834fbSBarry Smith nt = 0; 85830dcb7c9SBarry Smith for (i=0; i<nrecvs2-1; i++) { 85930dcb7c9SBarry Smith starts3[i+1] = starts3[i] + lens2[i]; 860d44834fbSBarry Smith nt += lens2[i]; 86130dcb7c9SBarry Smith } 86276466f69SStefano Zampini if (nrecvs2) nt += lens2[nrecvs2-1]; 863d44834fbSBarry Smith 86432dcc486SBarry Smith ierr = PetscMalloc((nt+1)*sizeof(PetscInt),&recvs2);CHKERRQ(ierr); 865b0a32e0cSBarry Smith ierr = PetscMalloc((nrecvs2+1)*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr); 86652b72c4aSBarry Smith for (i=0; i<nrecvs2; i++) { 86732dcc486SBarry Smith ierr = MPI_Irecv(recvs2+starts3[i],lens2[i],MPIU_INT,dest[i],tag3,comm,recv_waits+i);CHKERRQ(ierr); 86830dcb7c9SBarry Smith } 86930dcb7c9SBarry Smith 87030dcb7c9SBarry Smith /* send the messages */ 871b0a32e0cSBarry Smith ierr = PetscMalloc((nsends2+1)*sizeof(MPI_Request),&send_waits);CHKERRQ(ierr); 87230dcb7c9SBarry Smith for (i=0; i<nsends2; i++) { 87332dcc486SBarry Smith ierr = MPI_Isend(sends2+starts2[i],nprocs[i],MPIU_INT,source[i],tag3,comm,send_waits+i);CHKERRQ(ierr); 87430dcb7c9SBarry Smith } 87530dcb7c9SBarry Smith 87630dcb7c9SBarry Smith /* wait on receives */ 8770c468ba9SBarry Smith if (nrecvs2) { 8780c468ba9SBarry Smith ierr = PetscMalloc(nrecvs2*sizeof(MPI_Status),&recv_statuses);CHKERRQ(ierr); 87930dcb7c9SBarry Smith ierr = MPI_Waitall(nrecvs2,recv_waits,recv_statuses);CHKERRQ(ierr); 88030dcb7c9SBarry Smith ierr = PetscFree(recv_statuses);CHKERRQ(ierr); 8810c468ba9SBarry Smith } 88230dcb7c9SBarry Smith ierr = PetscFree(recv_waits);CHKERRQ(ierr); 88330dcb7c9SBarry Smith ierr = PetscFree(nprocs);CHKERRQ(ierr); 88430dcb7c9SBarry Smith 88507b52d57SBarry Smith if (debug) { /* ----------------------------------- */ 88630dcb7c9SBarry Smith cnt = 0; 88730dcb7c9SBarry Smith for (i=0; i<nrecvs2; i++) { 88830dcb7c9SBarry Smith nt = recvs2[cnt++]; 88930dcb7c9SBarry Smith for (j=0; j<nt; j++) { 89030dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"[%d] local node %d number of subdomains %d: ",rank,recvs2[cnt],recvs2[cnt+1]);CHKERRQ(ierr); 89130dcb7c9SBarry Smith for (k=0; k<recvs2[cnt+1]; k++) { 89230dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"%d ",recvs2[cnt+2+k]);CHKERRQ(ierr); 89330dcb7c9SBarry Smith } 89430dcb7c9SBarry Smith cnt += 2 + recvs2[cnt+1]; 89530dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"\n");CHKERRQ(ierr); 89630dcb7c9SBarry Smith } 89730dcb7c9SBarry Smith } 89830dcb7c9SBarry Smith ierr = PetscSynchronizedFlush(comm);CHKERRQ(ierr); 89907b52d57SBarry Smith } /* ----------------------------------- */ 90030dcb7c9SBarry Smith 90130dcb7c9SBarry Smith /* count number subdomains for each local node */ 90232dcc486SBarry Smith ierr = PetscMalloc(size*sizeof(PetscInt),&nprocs);CHKERRQ(ierr); 90332dcc486SBarry Smith ierr = PetscMemzero(nprocs,size*sizeof(PetscInt));CHKERRQ(ierr); 90430dcb7c9SBarry Smith cnt = 0; 90530dcb7c9SBarry Smith for (i=0; i<nrecvs2; i++) { 90630dcb7c9SBarry Smith nt = recvs2[cnt++]; 90730dcb7c9SBarry Smith for (j=0; j<nt; j++) { 908f6e5521dSKarl Rupp for (k=0; k<recvs2[cnt+1]; k++) nprocs[recvs2[cnt+2+k]]++; 90930dcb7c9SBarry Smith cnt += 2 + recvs2[cnt+1]; 91030dcb7c9SBarry Smith } 91130dcb7c9SBarry Smith } 91230dcb7c9SBarry Smith nt = 0; for (i=0; i<size; i++) nt += (nprocs[i] > 0); 91330dcb7c9SBarry Smith *nproc = nt; 91432dcc486SBarry Smith ierr = PetscMalloc((nt+1)*sizeof(PetscInt),procs);CHKERRQ(ierr); 91532dcc486SBarry Smith ierr = PetscMalloc((nt+1)*sizeof(PetscInt),numprocs);CHKERRQ(ierr); 91632dcc486SBarry Smith ierr = PetscMalloc((nt+1)*sizeof(PetscInt*),indices);CHKERRQ(ierr); 9170298fd71SBarry Smith for (i=0;i<nt+1;i++) (*indices)[i]=NULL; 91832dcc486SBarry Smith ierr = PetscMalloc(size*sizeof(PetscInt),&bprocs);CHKERRQ(ierr); 91930dcb7c9SBarry Smith cnt = 0; 92030dcb7c9SBarry Smith for (i=0; i<size; i++) { 92130dcb7c9SBarry Smith if (nprocs[i] > 0) { 92230dcb7c9SBarry Smith bprocs[i] = cnt; 92330dcb7c9SBarry Smith (*procs)[cnt] = i; 92430dcb7c9SBarry Smith (*numprocs)[cnt] = nprocs[i]; 92532dcc486SBarry Smith ierr = PetscMalloc(nprocs[i]*sizeof(PetscInt),&(*indices)[cnt]);CHKERRQ(ierr); 92630dcb7c9SBarry Smith cnt++; 92730dcb7c9SBarry Smith } 92830dcb7c9SBarry Smith } 92930dcb7c9SBarry Smith 93030dcb7c9SBarry Smith /* make the list of subdomains for each nontrivial local node */ 93132dcc486SBarry Smith ierr = PetscMemzero(*numprocs,nt*sizeof(PetscInt));CHKERRQ(ierr); 93230dcb7c9SBarry Smith cnt = 0; 93330dcb7c9SBarry Smith for (i=0; i<nrecvs2; i++) { 93430dcb7c9SBarry Smith nt = recvs2[cnt++]; 93530dcb7c9SBarry Smith for (j=0; j<nt; j++) { 936f6e5521dSKarl Rupp for (k=0; k<recvs2[cnt+1]; k++) (*indices)[bprocs[recvs2[cnt+2+k]]][(*numprocs)[bprocs[recvs2[cnt+2+k]]]++] = recvs2[cnt]; 93730dcb7c9SBarry Smith cnt += 2 + recvs2[cnt+1]; 93830dcb7c9SBarry Smith } 93930dcb7c9SBarry Smith } 94030dcb7c9SBarry Smith ierr = PetscFree(bprocs);CHKERRQ(ierr); 94107b52d57SBarry Smith ierr = PetscFree(recvs2);CHKERRQ(ierr); 94230dcb7c9SBarry Smith 94307b52d57SBarry Smith /* sort the node indexing by their global numbers */ 94407b52d57SBarry Smith nt = *nproc; 94507b52d57SBarry Smith for (i=0; i<nt; i++) { 94632dcc486SBarry Smith ierr = PetscMalloc(((*numprocs)[i])*sizeof(PetscInt),&tmp);CHKERRQ(ierr); 947f6e5521dSKarl Rupp for (j=0; j<(*numprocs)[i]; j++) tmp[j] = lindices[(*indices)[i][j]]; 94807b52d57SBarry Smith ierr = PetscSortIntWithArray((*numprocs)[i],tmp,(*indices)[i]);CHKERRQ(ierr); 94907b52d57SBarry Smith ierr = PetscFree(tmp);CHKERRQ(ierr); 95007b52d57SBarry Smith } 95107b52d57SBarry Smith 95207b52d57SBarry Smith if (debug) { /* ----------------------------------- */ 95330dcb7c9SBarry Smith nt = *nproc; 95430dcb7c9SBarry Smith for (i=0; i<nt; i++) { 95530dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"[%d] subdomain %d number of indices %d: ",rank,(*procs)[i],(*numprocs)[i]);CHKERRQ(ierr); 95630dcb7c9SBarry Smith for (j=0; j<(*numprocs)[i]; j++) { 95730dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"%d ",(*indices)[i][j]);CHKERRQ(ierr); 95830dcb7c9SBarry Smith } 95930dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"\n");CHKERRQ(ierr); 96030dcb7c9SBarry Smith } 96130dcb7c9SBarry Smith ierr = PetscSynchronizedFlush(comm);CHKERRQ(ierr); 96207b52d57SBarry Smith } /* ----------------------------------- */ 96330dcb7c9SBarry Smith 96430dcb7c9SBarry Smith /* wait on sends */ 96530dcb7c9SBarry Smith if (nsends2) { 966b0a32e0cSBarry Smith ierr = PetscMalloc(nsends2*sizeof(MPI_Status),&send_status);CHKERRQ(ierr); 96730dcb7c9SBarry Smith ierr = MPI_Waitall(nsends2,send_waits,send_status);CHKERRQ(ierr); 96830dcb7c9SBarry Smith ierr = PetscFree(send_status);CHKERRQ(ierr); 96930dcb7c9SBarry Smith } 97030dcb7c9SBarry Smith 97130dcb7c9SBarry Smith ierr = PetscFree(starts3);CHKERRQ(ierr); 97230dcb7c9SBarry Smith ierr = PetscFree(dest);CHKERRQ(ierr); 97330dcb7c9SBarry Smith ierr = PetscFree(send_waits);CHKERRQ(ierr); 9743677ff5aSBarry Smith 975bc8ff85bSBarry Smith ierr = PetscFree(nownedsenders);CHKERRQ(ierr); 976bc8ff85bSBarry Smith ierr = PetscFree(ownedsenders);CHKERRQ(ierr); 977bc8ff85bSBarry Smith ierr = PetscFree(starts);CHKERRQ(ierr); 97830dcb7c9SBarry Smith ierr = PetscFree(starts2);CHKERRQ(ierr); 97930dcb7c9SBarry Smith ierr = PetscFree(lens2);CHKERRQ(ierr); 98089d82c54SBarry Smith 98189d82c54SBarry Smith ierr = PetscFree(source);CHKERRQ(ierr); 98297f1f81fSBarry Smith ierr = PetscFree(len);CHKERRQ(ierr); 98389d82c54SBarry Smith ierr = PetscFree(recvs);CHKERRQ(ierr); 9843a96401aSBarry Smith ierr = PetscFree(nprocs);CHKERRQ(ierr); 98530dcb7c9SBarry Smith ierr = PetscFree(sends2);CHKERRQ(ierr); 98624cf384cSBarry Smith 98724cf384cSBarry Smith /* put the information about myself as the first entry in the list */ 98824cf384cSBarry Smith first_procs = (*procs)[0]; 98924cf384cSBarry Smith first_numprocs = (*numprocs)[0]; 99024cf384cSBarry Smith first_indices = (*indices)[0]; 99124cf384cSBarry Smith for (i=0; i<*nproc; i++) { 99224cf384cSBarry Smith if ((*procs)[i] == rank) { 99324cf384cSBarry Smith (*procs)[0] = (*procs)[i]; 99424cf384cSBarry Smith (*numprocs)[0] = (*numprocs)[i]; 99524cf384cSBarry Smith (*indices)[0] = (*indices)[i]; 99624cf384cSBarry Smith (*procs)[i] = first_procs; 99724cf384cSBarry Smith (*numprocs)[i] = first_numprocs; 99824cf384cSBarry Smith (*indices)[i] = first_indices; 99924cf384cSBarry Smith break; 100024cf384cSBarry Smith } 100124cf384cSBarry Smith } 100289d82c54SBarry Smith PetscFunctionReturn(0); 100389d82c54SBarry Smith } 100489d82c54SBarry Smith 10054a2ae208SSatish Balay #undef __FUNCT__ 10064a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingRestoreInfo" 100707b52d57SBarry Smith /*@C 100807b52d57SBarry Smith ISLocalToGlobalMappingRestoreInfo - Frees the memory allocated by ISLocalToGlobalMappingGetInfo() 100989d82c54SBarry Smith 101007b52d57SBarry Smith Collective on ISLocalToGlobalMapping 101107b52d57SBarry Smith 101207b52d57SBarry Smith Input Parameters: 101307b52d57SBarry Smith . mapping - the mapping from local to global indexing 101407b52d57SBarry Smith 101507b52d57SBarry Smith Output Parameter: 101607b52d57SBarry Smith + nproc - number of processors that are connected to this one 101707b52d57SBarry Smith . proc - neighboring processors 101807b52d57SBarry Smith . numproc - number of indices for each processor 101907b52d57SBarry Smith - indices - indices of local nodes shared with neighbor (sorted by global numbering) 102007b52d57SBarry Smith 102107b52d57SBarry Smith Level: advanced 102207b52d57SBarry Smith 102307b52d57SBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreateIS(), ISLocalToGlobalMappingCreate(), 102407b52d57SBarry Smith ISLocalToGlobalMappingGetInfo() 102507b52d57SBarry Smith @*/ 10267087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingRestoreInfo(ISLocalToGlobalMapping mapping,PetscInt *nproc,PetscInt *procs[],PetscInt *numprocs[],PetscInt **indices[]) 102707b52d57SBarry Smith { 10286849ba73SBarry Smith PetscErrorCode ierr; 102932dcc486SBarry Smith PetscInt i; 103007b52d57SBarry Smith 103107b52d57SBarry Smith PetscFunctionBegin; 103205b42c5fSBarry Smith ierr = PetscFree(*procs);CHKERRQ(ierr); 103305b42c5fSBarry Smith ierr = PetscFree(*numprocs);CHKERRQ(ierr); 103400ff320aSBarry Smith if (*indices) { 103505b42c5fSBarry Smith ierr = PetscFree((*indices)[0]);CHKERRQ(ierr); 103600ff320aSBarry Smith for (i=1; i<*nproc; i++) { 103705b42c5fSBarry Smith ierr = PetscFree((*indices)[i]);CHKERRQ(ierr); 103807b52d57SBarry Smith } 103907b52d57SBarry Smith ierr = PetscFree(*indices);CHKERRQ(ierr); 104024cf384cSBarry Smith } 104107b52d57SBarry Smith PetscFunctionReturn(0); 104207b52d57SBarry Smith } 104386994e45SJed Brown 104486994e45SJed Brown #undef __FUNCT__ 104586994e45SJed Brown #define __FUNCT__ "ISLocalToGlobalMappingGetIndices" 104686994e45SJed Brown /*@C 104786994e45SJed Brown ISLocalToGlobalMappingGetIndices - Get global indices for every local point 104886994e45SJed Brown 104986994e45SJed Brown Not Collective 105086994e45SJed Brown 105186994e45SJed Brown Input Arguments: 105286994e45SJed Brown . ltog - local to global mapping 105386994e45SJed Brown 105486994e45SJed Brown Output Arguments: 105586994e45SJed Brown . array - array of indices 105686994e45SJed Brown 105786994e45SJed Brown Level: advanced 105886994e45SJed Brown 105986994e45SJed Brown .seealso: ISLocalToGlobalMappingCreate(), ISLocalToGlobalMappingApply(), ISLocalToGlobalMappingRestoreIndices() 106086994e45SJed Brown @*/ 10617087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingGetIndices(ISLocalToGlobalMapping ltog,const PetscInt **array) 106286994e45SJed Brown { 106386994e45SJed Brown PetscFunctionBegin; 106486994e45SJed Brown PetscValidHeaderSpecific(ltog,IS_LTOGM_CLASSID,1); 106586994e45SJed Brown PetscValidPointer(array,2); 106686994e45SJed Brown *array = ltog->indices; 106786994e45SJed Brown PetscFunctionReturn(0); 106886994e45SJed Brown } 106986994e45SJed Brown 107086994e45SJed Brown #undef __FUNCT__ 107186994e45SJed Brown #define __FUNCT__ "ISLocalToGlobalMappingRestoreIndices" 107286994e45SJed Brown /*@C 107386994e45SJed Brown ISLocalToGlobalMappingRestoreIndices - Restore indices obtained with ISLocalToGlobalMappingRestoreIndices() 107486994e45SJed Brown 107586994e45SJed Brown Not Collective 107686994e45SJed Brown 107786994e45SJed Brown Input Arguments: 107886994e45SJed Brown + ltog - local to global mapping 107986994e45SJed Brown - array - array of indices 108086994e45SJed Brown 108186994e45SJed Brown Level: advanced 108286994e45SJed Brown 108386994e45SJed Brown .seealso: ISLocalToGlobalMappingCreate(), ISLocalToGlobalMappingApply(), ISLocalToGlobalMappingGetIndices() 108486994e45SJed Brown @*/ 10857087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingRestoreIndices(ISLocalToGlobalMapping ltog,const PetscInt **array) 108686994e45SJed Brown { 108786994e45SJed Brown PetscFunctionBegin; 108886994e45SJed Brown PetscValidHeaderSpecific(ltog,IS_LTOGM_CLASSID,1); 108986994e45SJed Brown PetscValidPointer(array,2); 109086994e45SJed Brown if (*array != ltog->indices) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_BADPTR,"Trying to return mismatched pointer"); 10910298fd71SBarry Smith *array = NULL; 109286994e45SJed Brown PetscFunctionReturn(0); 109386994e45SJed Brown } 1094f7efa3c7SJed Brown 1095f7efa3c7SJed Brown #undef __FUNCT__ 1096f7efa3c7SJed Brown #define __FUNCT__ "ISLocalToGlobalMappingConcatenate" 1097f7efa3c7SJed Brown /*@C 1098f7efa3c7SJed Brown ISLocalToGlobalMappingConcatenate - Create a new mapping that concatenates a list of mappings 1099f7efa3c7SJed Brown 1100f7efa3c7SJed Brown Not Collective 1101f7efa3c7SJed Brown 1102f7efa3c7SJed Brown Input Arguments: 1103f7efa3c7SJed Brown + comm - communicator for the new mapping, must contain the communicator of every mapping to concatenate 1104f7efa3c7SJed Brown . n - number of mappings to concatenate 1105f7efa3c7SJed Brown - ltogs - local to global mappings 1106f7efa3c7SJed Brown 1107f7efa3c7SJed Brown Output Arguments: 1108f7efa3c7SJed Brown . ltogcat - new mapping 1109f7efa3c7SJed Brown 1110f7efa3c7SJed Brown Level: advanced 1111f7efa3c7SJed Brown 1112f7efa3c7SJed Brown .seealso: ISLocalToGlobalMappingCreate() 1113f7efa3c7SJed Brown @*/ 1114f7efa3c7SJed Brown PetscErrorCode ISLocalToGlobalMappingConcatenate(MPI_Comm comm,PetscInt n,const ISLocalToGlobalMapping ltogs[],ISLocalToGlobalMapping *ltogcat) 1115f7efa3c7SJed Brown { 1116f7efa3c7SJed Brown PetscInt i,cnt,m,*idx; 1117f7efa3c7SJed Brown PetscErrorCode ierr; 1118f7efa3c7SJed Brown 1119f7efa3c7SJed Brown PetscFunctionBegin; 1120f7efa3c7SJed Brown if (n < 0) SETERRQ1(comm,PETSC_ERR_ARG_OUTOFRANGE,"Must have a non-negative number of mappings, given %D",n); 1121f7efa3c7SJed Brown if (n > 0) PetscValidPointer(ltogs,3); 1122f7efa3c7SJed Brown for (i=0; i<n; i++) PetscValidHeaderSpecific(ltogs[i],IS_LTOGM_CLASSID,3); 1123f7efa3c7SJed Brown PetscValidPointer(ltogcat,4); 1124f7efa3c7SJed Brown for (cnt=0,i=0; i<n; i++) { 1125f7efa3c7SJed Brown ierr = ISLocalToGlobalMappingGetSize(ltogs[i],&m);CHKERRQ(ierr); 1126f7efa3c7SJed Brown cnt += m; 1127f7efa3c7SJed Brown } 1128f7efa3c7SJed Brown ierr = PetscMalloc(cnt*sizeof(PetscInt),&idx);CHKERRQ(ierr); 1129f7efa3c7SJed Brown for (cnt=0,i=0; i<n; i++) { 1130f7efa3c7SJed Brown const PetscInt *subidx; 1131f7efa3c7SJed Brown ierr = ISLocalToGlobalMappingGetSize(ltogs[i],&m);CHKERRQ(ierr); 1132f7efa3c7SJed Brown ierr = ISLocalToGlobalMappingGetIndices(ltogs[i],&subidx);CHKERRQ(ierr); 1133f7efa3c7SJed Brown ierr = PetscMemcpy(&idx[cnt],subidx,m*sizeof(PetscInt));CHKERRQ(ierr); 1134f7efa3c7SJed Brown ierr = ISLocalToGlobalMappingRestoreIndices(ltogs[i],&subidx);CHKERRQ(ierr); 1135f7efa3c7SJed Brown cnt += m; 1136f7efa3c7SJed Brown } 1137f7efa3c7SJed Brown ierr = ISLocalToGlobalMappingCreate(comm,cnt,idx,PETSC_OWN_POINTER,ltogcat);CHKERRQ(ierr); 1138f7efa3c7SJed Brown PetscFunctionReturn(0); 1139f7efa3c7SJed Brown } 1140