12362add9SBarry Smith 2e090d566SSatish Balay #include "petscsys.h" /*I "petscsys.h" I*/ 3e090d566SSatish Balay #include "src/vec/is/isimpl.h" /*I "petscis.h" I*/ 42362add9SBarry Smith 5dfbe8321SBarry Smith EXTERN PetscErrorCode VecInitializePackage(char *); 6*6849ba73SBarry Smith PetscCookie IS_LTOGM_COOKIE = -1; 78e58c17dSMatthew Knepley 84a2ae208SSatish Balay #undef __FUNCT__ 94a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingGetSize" 103b9aefa3SBarry Smith /*@C 113b9aefa3SBarry Smith ISLocalToGlobalMappingGetSize - Gets the local size of a local to global mapping. 123b9aefa3SBarry Smith 133b9aefa3SBarry Smith Not Collective 143b9aefa3SBarry Smith 153b9aefa3SBarry Smith Input Parameter: 163b9aefa3SBarry Smith . ltog - local to global mapping 173b9aefa3SBarry Smith 183b9aefa3SBarry Smith Output Parameter: 193b9aefa3SBarry Smith . n - the number of entries in the local mapping 203b9aefa3SBarry Smith 213b9aefa3SBarry Smith Level: advanced 223b9aefa3SBarry Smith 23273d9f13SBarry Smith Concepts: mapping^local to global 243b9aefa3SBarry Smith 253b9aefa3SBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreate() 263b9aefa3SBarry Smith @*/ 27dfbe8321SBarry Smith PetscErrorCode ISLocalToGlobalMappingGetSize(ISLocalToGlobalMapping mapping,int *n) 283b9aefa3SBarry Smith { 293b9aefa3SBarry Smith PetscFunctionBegin; 304482741eSBarry Smith PetscValidHeaderSpecific(mapping,IS_LTOGM_COOKIE,1); 314482741eSBarry Smith PetscValidIntPointer(n,2); 323b9aefa3SBarry Smith *n = mapping->n; 333b9aefa3SBarry Smith PetscFunctionReturn(0); 343b9aefa3SBarry Smith } 353b9aefa3SBarry Smith 364a2ae208SSatish Balay #undef __FUNCT__ 374a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingView" 385a5d4f66SBarry Smith /*@C 395a5d4f66SBarry Smith ISLocalToGlobalMappingView - View a local to global mapping 405a5d4f66SBarry Smith 41b9cd556bSLois Curfman McInnes Not Collective 42b9cd556bSLois Curfman McInnes 435a5d4f66SBarry Smith Input Parameters: 443b9aefa3SBarry Smith + ltog - local to global mapping 453b9aefa3SBarry Smith - viewer - viewer 465a5d4f66SBarry Smith 47a997ad1aSLois Curfman McInnes Level: advanced 48a997ad1aSLois Curfman McInnes 49273d9f13SBarry Smith Concepts: mapping^local to global 505a5d4f66SBarry Smith 515a5d4f66SBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreate() 525a5d4f66SBarry Smith @*/ 53dfbe8321SBarry Smith PetscErrorCode ISLocalToGlobalMappingView(ISLocalToGlobalMapping mapping,PetscViewer viewer) 545a5d4f66SBarry Smith { 55*6849ba73SBarry Smith int i,rank; 5632077d6dSBarry Smith PetscTruth iascii; 57*6849ba73SBarry Smith PetscErrorCode ierr; 585a5d4f66SBarry Smith 595a5d4f66SBarry Smith PetscFunctionBegin; 604482741eSBarry Smith PetscValidHeaderSpecific(mapping,IS_LTOGM_COOKIE,1); 61b0a32e0cSBarry Smith if (!viewer) viewer = PETSC_VIEWER_STDOUT_(mapping->comm); 624482741eSBarry Smith PetscValidHeaderSpecific(viewer,PETSC_VIEWER_COOKIE,2); 635a5d4f66SBarry Smith 64f1af5d2fSBarry Smith ierr = MPI_Comm_rank(mapping->comm,&rank);CHKERRQ(ierr); 6532077d6dSBarry Smith ierr = PetscTypeCompare((PetscObject)viewer,PETSC_VIEWER_ASCII,&iascii);CHKERRQ(ierr); 6632077d6dSBarry Smith if (iascii) { 675a5d4f66SBarry Smith for (i=0; i<mapping->n; i++) { 68b0a32e0cSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] %d %d\n",rank,i,mapping->indices[i]);CHKERRQ(ierr); 696831982aSBarry Smith } 70b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 716831982aSBarry Smith } else { 72958c9bccSBarry Smith SETERRQ1(PETSC_ERR_SUP,"Viewer type %s not supported for ISLocalToGlobalMapping",((PetscObject)viewer)->type_name); 735a5d4f66SBarry Smith } 745a5d4f66SBarry Smith 755a5d4f66SBarry Smith PetscFunctionReturn(0); 765a5d4f66SBarry Smith } 775a5d4f66SBarry Smith 784a2ae208SSatish Balay #undef __FUNCT__ 794a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingCreateIS" 802bdab257SBarry Smith /*@C 812bdab257SBarry Smith ISLocalToGlobalMappingCreateIS - Creates a mapping between a local (0 to n) 822bdab257SBarry Smith ordering and a global parallel ordering. 832bdab257SBarry Smith 840f5bd95cSBarry Smith Not collective 85b9cd556bSLois Curfman McInnes 86a997ad1aSLois Curfman McInnes Input Parameter: 872bdab257SBarry Smith . is - index set containing the global numbers for each local 882bdab257SBarry Smith 89a997ad1aSLois Curfman McInnes Output Parameter: 902bdab257SBarry Smith . mapping - new mapping data structure 912bdab257SBarry Smith 92a997ad1aSLois Curfman McInnes Level: advanced 93a997ad1aSLois Curfman McInnes 94273d9f13SBarry Smith Concepts: mapping^local to global 952bdab257SBarry Smith 962bdab257SBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreate() 972bdab257SBarry Smith @*/ 98dfbe8321SBarry Smith PetscErrorCode ISLocalToGlobalMappingCreateIS(IS is,ISLocalToGlobalMapping *mapping) 992bdab257SBarry Smith { 100*6849ba73SBarry Smith PetscErrorCode ierr; 101*6849ba73SBarry Smith int n,*indices; 1022bdab257SBarry Smith MPI_Comm comm; 1033a40ed3dSBarry Smith 1043a40ed3dSBarry Smith PetscFunctionBegin; 1054482741eSBarry Smith PetscValidHeaderSpecific(is,IS_COOKIE,1); 1064482741eSBarry Smith PetscValidPointer(mapping,2); 1072bdab257SBarry Smith 1082bdab257SBarry Smith ierr = PetscObjectGetComm((PetscObject)is,&comm);CHKERRQ(ierr); 1093b9aefa3SBarry Smith ierr = ISGetLocalSize(is,&n);CHKERRQ(ierr); 1102bdab257SBarry Smith ierr = ISGetIndices(is,&indices);CHKERRQ(ierr); 1112bdab257SBarry Smith ierr = ISLocalToGlobalMappingCreate(comm,n,indices,mapping);CHKERRQ(ierr); 1122bdab257SBarry Smith ierr = ISRestoreIndices(is,&indices);CHKERRQ(ierr); 1132bdab257SBarry Smith 1143a40ed3dSBarry Smith PetscFunctionReturn(0); 1152bdab257SBarry Smith } 1165a5d4f66SBarry Smith 117b46b645bSBarry Smith 1184a2ae208SSatish Balay #undef __FUNCT__ 1194a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingCreate" 120dd7157adSSatish Balay /*@C 12190f02eecSBarry Smith ISLocalToGlobalMappingCreate - Creates a mapping between a local (0 to n) 12290f02eecSBarry Smith ordering and a global parallel ordering. 1232362add9SBarry Smith 12489d82c54SBarry Smith Not Collective, but communicator may have more than one process 125b9cd556bSLois Curfman McInnes 1262362add9SBarry Smith Input Parameters: 12789d82c54SBarry Smith + comm - MPI communicator 12890f02eecSBarry Smith . n - the number of local elements 129b9cd556bSLois Curfman McInnes - indices - the global index for each local element 1302362add9SBarry Smith 131a997ad1aSLois Curfman McInnes Output Parameter: 13290f02eecSBarry Smith . mapping - new mapping data structure 1332362add9SBarry Smith 134a997ad1aSLois Curfman McInnes Level: advanced 135a997ad1aSLois Curfman McInnes 136273d9f13SBarry Smith Concepts: mapping^local to global 1372362add9SBarry Smith 138b46b645bSBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreateIS(), ISLocalToGlobalMappingCreateNC() 1392362add9SBarry Smith @*/ 140dfbe8321SBarry Smith PetscErrorCode ISLocalToGlobalMappingCreate(MPI_Comm cm,int n,const int indices[],ISLocalToGlobalMapping *mapping) 1412362add9SBarry Smith { 142*6849ba73SBarry Smith PetscErrorCode ierr; 143*6849ba73SBarry Smith int *in; 144b46b645bSBarry Smith 145b46b645bSBarry Smith PetscFunctionBegin; 1464482741eSBarry Smith PetscValidIntPointer(indices,3); 1474482741eSBarry Smith PetscValidPointer(mapping,4); 148b46b645bSBarry Smith ierr = PetscMalloc((n+1)*sizeof(int),&in);CHKERRQ(ierr); 149b46b645bSBarry Smith ierr = PetscMemcpy(in,indices,n*sizeof(int));CHKERRQ(ierr); 150b46b645bSBarry Smith ierr = ISLocalToGlobalMappingCreateNC(cm,n,in,mapping);CHKERRQ(ierr); 151b46b645bSBarry Smith PetscFunctionReturn(0); 152b46b645bSBarry Smith } 153b46b645bSBarry Smith 154b46b645bSBarry Smith #undef __FUNCT__ 155b46b645bSBarry Smith #define __FUNCT__ "ISLocalToGlobalMappingCreateNC" 156b46b645bSBarry Smith /*@C 157b46b645bSBarry Smith ISLocalToGlobalMappingCreateNC - Creates a mapping between a local (0 to n) 158b46b645bSBarry Smith ordering and a global parallel ordering. 159b46b645bSBarry Smith 160b46b645bSBarry Smith Not Collective, but communicator may have more than one process 161b46b645bSBarry Smith 162b46b645bSBarry Smith Input Parameters: 163b46b645bSBarry Smith + comm - MPI communicator 164b46b645bSBarry Smith . n - the number of local elements 165b46b645bSBarry Smith - indices - the global index for each local element 166b46b645bSBarry Smith 167b46b645bSBarry Smith Output Parameter: 168b46b645bSBarry Smith . mapping - new mapping data structure 169b46b645bSBarry Smith 170b46b645bSBarry Smith Level: developer 171b46b645bSBarry Smith 172b46b645bSBarry Smith Notes: Does not copy the indices, just keeps the pointer to the indices. The ISLocalToGlobalMappingDestroy() 173b46b645bSBarry Smith will free the space so it must be obtained with PetscMalloc() and it must not be freed elsewhere. 174b46b645bSBarry Smith 175b46b645bSBarry Smith Concepts: mapping^local to global 176b46b645bSBarry Smith 177b46b645bSBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreateIS(), ISLocalToGlobalMappingCreate() 178b46b645bSBarry Smith @*/ 179dfbe8321SBarry Smith PetscErrorCode ISLocalToGlobalMappingCreateNC(MPI_Comm cm,int n,const int indices[],ISLocalToGlobalMapping *mapping) 180b46b645bSBarry Smith { 181dfbe8321SBarry Smith PetscErrorCode ierr; 18223f7533aSBarry Smith 1833a40ed3dSBarry Smith PetscFunctionBegin; 1844482741eSBarry Smith PetscValidIntPointer(indices,3); 1854482741eSBarry Smith PetscValidPointer(mapping,4); 1868e58c17dSMatthew Knepley *mapping = PETSC_NULL; 1878e58c17dSMatthew Knepley #ifndef PETSC_USE_DYNAMIC_LIBRARIES 18823f7533aSBarry Smith ierr = VecInitializePackage(PETSC_NULL);CHKERRQ(ierr); 1898e58c17dSMatthew Knepley #endif 19023f7533aSBarry Smith if (IS_LTOGM_COOKIE == -1) { 19123f7533aSBarry Smith ierr = PetscLogClassRegister(&IS_LTOGM_COOKIE,"IS Local to global mapping");CHKERRQ(ierr); 19223f7533aSBarry Smith } 1932362add9SBarry Smith 1943f1db9ecSBarry Smith PetscHeaderCreate(*mapping,_p_ISLocalToGlobalMapping,int,IS_LTOGM_COOKIE,0,"ISLocalToGlobalMapping", 1953f1db9ecSBarry Smith cm,ISLocalToGlobalMappingDestroy,ISLocalToGlobalMappingView); 196b0a32e0cSBarry Smith PetscLogObjectCreate(*mapping); 197b0a32e0cSBarry Smith PetscLogObjectMemory(*mapping,sizeof(struct _p_ISLocalToGlobalMapping)+n*sizeof(int)); 198d4bb536fSBarry Smith 199d4bb536fSBarry Smith (*mapping)->n = n; 200b46b645bSBarry Smith (*mapping)->indices = (int*)indices; 201d4bb536fSBarry Smith 202d4bb536fSBarry Smith /* 203d4bb536fSBarry Smith Do not create the global to local mapping. This is only created if 204d4bb536fSBarry Smith ISGlobalToLocalMapping() is called 205d4bb536fSBarry Smith */ 206d4bb536fSBarry Smith (*mapping)->globals = 0; 2073a40ed3dSBarry Smith PetscFunctionReturn(0); 2082362add9SBarry Smith } 2092362add9SBarry Smith 2104a2ae208SSatish Balay #undef __FUNCT__ 2114a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingBlock" 212323b833fSBarry Smith /*@C 213323b833fSBarry Smith ISLocalToGlobalMappingBlock - Creates a blocked index version of an 214323b833fSBarry Smith ISLocalToGlobalMapping that is appropriate for MatSetLocalToGlobalMappingBlock() 215323b833fSBarry Smith and VecSetLocalToGlobalMappingBlock(). 216323b833fSBarry Smith 217323b833fSBarry Smith Not Collective, but communicator may have more than one process 218323b833fSBarry Smith 219323b833fSBarry Smith Input Parameters: 220323b833fSBarry Smith + inmap - original point-wise mapping 221323b833fSBarry Smith - bs - block size 222323b833fSBarry Smith 223323b833fSBarry Smith Output Parameter: 224323b833fSBarry Smith . outmap - block based mapping 225323b833fSBarry Smith 226323b833fSBarry Smith Level: advanced 227323b833fSBarry Smith 228323b833fSBarry Smith Concepts: mapping^local to global 229323b833fSBarry Smith 230323b833fSBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreate(), ISLocalToGlobalMappingCreateIS() 231323b833fSBarry Smith @*/ 232dfbe8321SBarry Smith PetscErrorCode ISLocalToGlobalMappingBlock(ISLocalToGlobalMapping inmap,int bs,ISLocalToGlobalMapping *outmap) 233323b833fSBarry Smith { 234*6849ba73SBarry Smith PetscErrorCode ierr; 235*6849ba73SBarry Smith int *ii,i,n; 236323b833fSBarry Smith 237323b833fSBarry Smith PetscFunctionBegin; 238323b833fSBarry Smith if (bs > 1) { 239323b833fSBarry Smith n = inmap->n/bs; 240323b833fSBarry Smith ierr = PetscMalloc(n*sizeof(int),&ii);CHKERRQ(ierr); 241323b833fSBarry Smith for (i=0; i<n; i++) { 242b8ee7809SBarry Smith ii[i] = inmap->indices[bs*i]/bs; 243323b833fSBarry Smith } 244323b833fSBarry Smith ierr = ISLocalToGlobalMappingCreate(inmap->comm,n,ii,outmap);CHKERRQ(ierr); 245323b833fSBarry Smith ierr = PetscFree(ii);CHKERRQ(ierr); 246323b833fSBarry Smith } else { 247323b833fSBarry Smith *outmap = inmap; 248323b833fSBarry Smith ierr = PetscObjectReference((PetscObject)inmap);CHKERRQ(ierr); 249323b833fSBarry Smith } 250323b833fSBarry Smith PetscFunctionReturn(0); 251323b833fSBarry Smith } 252323b833fSBarry Smith 2534a2ae208SSatish Balay #undef __FUNCT__ 2544a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingDestroy" 25590f02eecSBarry Smith /*@ 25690f02eecSBarry Smith ISLocalToGlobalMappingDestroy - Destroys a mapping between a local (0 to n) 25790f02eecSBarry Smith ordering and a global parallel ordering. 25890f02eecSBarry Smith 2590f5bd95cSBarry Smith Note Collective 260b9cd556bSLois Curfman McInnes 26190f02eecSBarry Smith Input Parameters: 26290f02eecSBarry Smith . mapping - mapping data structure 26390f02eecSBarry Smith 264a997ad1aSLois Curfman McInnes Level: advanced 265a997ad1aSLois Curfman McInnes 2663acfe500SLois Curfman McInnes .seealso: ISLocalToGlobalMappingCreate() 26790f02eecSBarry Smith @*/ 268dfbe8321SBarry Smith PetscErrorCode ISLocalToGlobalMappingDestroy(ISLocalToGlobalMapping mapping) 26990f02eecSBarry Smith { 270dfbe8321SBarry Smith PetscErrorCode ierr; 2713a40ed3dSBarry Smith PetscFunctionBegin; 2724482741eSBarry Smith PetscValidPointer(mapping,1); 2733a40ed3dSBarry Smith if (--mapping->refct > 0) PetscFunctionReturn(0); 27485614651SBarry Smith if (mapping->refct < 0) { 275634064b4SBarry Smith SETERRQ(PETSC_ERR_PLIB,"Mapping already destroyed"); 27685614651SBarry Smith } 27790f02eecSBarry Smith 278606d414cSSatish Balay ierr = PetscFree(mapping->indices);CHKERRQ(ierr); 279606d414cSSatish Balay if (mapping->globals) {ierr = PetscFree(mapping->globals);CHKERRQ(ierr);} 280b0a32e0cSBarry Smith PetscLogObjectDestroy(mapping); 281d4bb536fSBarry Smith PetscHeaderDestroy(mapping); 2823a40ed3dSBarry Smith PetscFunctionReturn(0); 28390f02eecSBarry Smith } 28490f02eecSBarry Smith 2854a2ae208SSatish Balay #undef __FUNCT__ 2864a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingApplyIS" 28790f02eecSBarry Smith /*@ 2883acfe500SLois Curfman McInnes ISLocalToGlobalMappingApplyIS - Creates from an IS in the local numbering 2893acfe500SLois Curfman McInnes a new index set using the global numbering defined in an ISLocalToGlobalMapping 2903acfe500SLois Curfman McInnes context. 29190f02eecSBarry Smith 292b9cd556bSLois Curfman McInnes Not collective 293b9cd556bSLois Curfman McInnes 29490f02eecSBarry Smith Input Parameters: 295b9cd556bSLois Curfman McInnes + mapping - mapping between local and global numbering 296b9cd556bSLois Curfman McInnes - is - index set in local numbering 29790f02eecSBarry Smith 29890f02eecSBarry Smith Output Parameters: 29990f02eecSBarry Smith . newis - index set in global numbering 30090f02eecSBarry Smith 301a997ad1aSLois Curfman McInnes Level: advanced 302a997ad1aSLois Curfman McInnes 303273d9f13SBarry Smith Concepts: mapping^local to global 3043acfe500SLois Curfman McInnes 30590f02eecSBarry Smith .seealso: ISLocalToGlobalMappingApply(), ISLocalToGlobalMappingCreate(), 306d4bb536fSBarry Smith ISLocalToGlobalMappingDestroy(), ISGlobalToLocalMappingApply() 30790f02eecSBarry Smith @*/ 308dfbe8321SBarry Smith PetscErrorCode ISLocalToGlobalMappingApplyIS(ISLocalToGlobalMapping mapping,IS is,IS *newis) 30990f02eecSBarry Smith { 310*6849ba73SBarry Smith PetscErrorCode ierr; 311*6849ba73SBarry Smith int n,i,*idxin,*idxmap,*idxout,Nmax = mapping->n; 3123a40ed3dSBarry Smith 3133a40ed3dSBarry Smith PetscFunctionBegin; 3144482741eSBarry Smith PetscValidPointer(mapping,1); 3154482741eSBarry Smith PetscValidHeaderSpecific(is,IS_COOKIE,2); 3164482741eSBarry Smith PetscValidPointer(newis,3); 31790f02eecSBarry Smith 3183b9aefa3SBarry Smith ierr = ISGetLocalSize(is,&n);CHKERRQ(ierr); 31990f02eecSBarry Smith ierr = ISGetIndices(is,&idxin);CHKERRQ(ierr); 32090f02eecSBarry Smith idxmap = mapping->indices; 32190f02eecSBarry Smith 322b0a32e0cSBarry Smith ierr = PetscMalloc((n+1)*sizeof(int),&idxout);CHKERRQ(ierr); 32390f02eecSBarry Smith for (i=0; i<n; i++) { 324590ac198SBarry Smith if (idxin[i] >= Nmax) SETERRQ3(PETSC_ERR_ARG_OUTOFRANGE,"Local index %d too large %d (max) at %d",idxin[i],Nmax-1,i); 32590f02eecSBarry Smith idxout[i] = idxmap[idxin[i]]; 32690f02eecSBarry Smith } 3273b9aefa3SBarry Smith ierr = ISRestoreIndices(is,&idxin);CHKERRQ(ierr); 328029af93fSBarry Smith ierr = ISCreateGeneral(PETSC_COMM_SELF,n,idxout,newis);CHKERRQ(ierr); 329606d414cSSatish Balay ierr = PetscFree(idxout);CHKERRQ(ierr); 3303a40ed3dSBarry Smith PetscFunctionReturn(0); 33190f02eecSBarry Smith } 33290f02eecSBarry Smith 33389d82c54SBarry Smith /*MC 3343acfe500SLois Curfman McInnes ISLocalToGlobalMappingApply - Takes a list of integers in a local numbering 3353acfe500SLois Curfman McInnes and converts them to the global numbering. 33690f02eecSBarry Smith 337b9cd556bSLois Curfman McInnes Not collective 338b9cd556bSLois Curfman McInnes 339bb25748dSBarry Smith Input Parameters: 340b9cd556bSLois Curfman McInnes + mapping - the local to global mapping context 341bb25748dSBarry Smith . N - number of integers 342b9cd556bSLois Curfman McInnes - in - input indices in local numbering 343bb25748dSBarry Smith 344bb25748dSBarry Smith Output Parameter: 345bb25748dSBarry Smith . out - indices in global numbering 346bb25748dSBarry Smith 3473b9aefa3SBarry Smith Synopsis: 348216e7ba4SBarry Smith int ISLocalToGlobalMappingApply(ISLocalToGlobalMapping mapping,int N,int in[],int out[]) 3493b9aefa3SBarry Smith 350b9cd556bSLois Curfman McInnes Notes: 351b9cd556bSLois Curfman McInnes The in and out array parameters may be identical. 352d4bb536fSBarry Smith 353a997ad1aSLois Curfman McInnes Level: advanced 354a997ad1aSLois Curfman McInnes 355bb25748dSBarry Smith .seealso: ISLocalToGlobalMappingCreate(),ISLocalToGlobalMappingDestroy(), 3560752156aSBarry Smith ISLocalToGlobalMappingApplyIS(),AOCreateBasic(),AOApplicationToPetsc(), 357d4bb536fSBarry Smith AOPetscToApplication(), ISGlobalToLocalMappingApply() 358bb25748dSBarry Smith 359273d9f13SBarry Smith Concepts: mapping^local to global 360d4bb536fSBarry Smith 36189d82c54SBarry Smith M*/ 362d4bb536fSBarry Smith 363d4bb536fSBarry Smith /* -----------------------------------------------------------------------------------------*/ 364d4bb536fSBarry Smith 3654a2ae208SSatish Balay #undef __FUNCT__ 3664a2ae208SSatish Balay #define __FUNCT__ "ISGlobalToLocalMappingSetUp_Private" 367d4bb536fSBarry Smith /* 368d4bb536fSBarry Smith Creates the global fields in the ISLocalToGlobalMapping structure 369d4bb536fSBarry Smith */ 370*6849ba73SBarry Smith static PetscErrorCode ISGlobalToLocalMappingSetUp_Private(ISLocalToGlobalMapping mapping) 371d4bb536fSBarry Smith { 372*6849ba73SBarry Smith PetscErrorCode ierr; 373*6849ba73SBarry Smith int i,*idx = mapping->indices,n = mapping->n,end,start,*globals; 374d4bb536fSBarry Smith 3753a40ed3dSBarry Smith PetscFunctionBegin; 376d4bb536fSBarry Smith end = 0; 377d4bb536fSBarry Smith start = 100000000; 378d4bb536fSBarry Smith 379d4bb536fSBarry Smith for (i=0; i<n; i++) { 380d4bb536fSBarry Smith if (idx[i] < 0) continue; 381d4bb536fSBarry Smith if (idx[i] < start) start = idx[i]; 382d4bb536fSBarry Smith if (idx[i] > end) end = idx[i]; 383d4bb536fSBarry Smith } 384d4bb536fSBarry Smith if (start > end) {start = 0; end = -1;} 385d4bb536fSBarry Smith mapping->globalstart = start; 386d4bb536fSBarry Smith mapping->globalend = end; 387d4bb536fSBarry Smith 388b0a32e0cSBarry Smith ierr = PetscMalloc((end-start+2)*sizeof(int),&globals);CHKERRQ(ierr); 389b0a32e0cSBarry Smith mapping->globals = globals; 390d4bb536fSBarry Smith for (i=0; i<end-start+1; i++) { 391d4bb536fSBarry Smith globals[i] = -1; 392d4bb536fSBarry Smith } 393d4bb536fSBarry Smith for (i=0; i<n; i++) { 394d4bb536fSBarry Smith if (idx[i] < 0) continue; 395d4bb536fSBarry Smith globals[idx[i] - start] = i; 396d4bb536fSBarry Smith } 397d4bb536fSBarry Smith 398b0a32e0cSBarry Smith PetscLogObjectMemory(mapping,(end-start+1)*sizeof(int)); 3993a40ed3dSBarry Smith PetscFunctionReturn(0); 400d4bb536fSBarry Smith } 401d4bb536fSBarry Smith 4024a2ae208SSatish Balay #undef __FUNCT__ 4034a2ae208SSatish Balay #define __FUNCT__ "ISGlobalToLocalMappingApply" 404d4bb536fSBarry Smith /*@ 405a997ad1aSLois Curfman McInnes ISGlobalToLocalMappingApply - Provides the local numbering for a list of integers 406a997ad1aSLois Curfman McInnes specified with a global numbering. 407d4bb536fSBarry Smith 408b9cd556bSLois Curfman McInnes Not collective 409b9cd556bSLois Curfman McInnes 410d4bb536fSBarry Smith Input Parameters: 411b9cd556bSLois Curfman McInnes + mapping - mapping between local and global numbering 412d4bb536fSBarry Smith . type - IS_GTOLM_MASK - replaces global indices with no local value with -1 413d4bb536fSBarry Smith IS_GTOLM_DROP - drops the indices with no local value from the output list 414d4bb536fSBarry Smith . n - number of global indices to map 415b9cd556bSLois Curfman McInnes - idx - global indices to map 416d4bb536fSBarry Smith 417d4bb536fSBarry Smith Output Parameters: 418b9cd556bSLois Curfman McInnes + nout - number of indices in output array (if type == IS_GTOLM_MASK then nout = n) 419b9cd556bSLois Curfman McInnes - idxout - local index of each global index, one must pass in an array long enough 420e182c471SBarry Smith to hold all the indices. You can call ISGlobalToLocalMappingApply() with 421e182c471SBarry Smith idxout == PETSC_NULL to determine the required length (returned in nout) 422e182c471SBarry Smith and then allocate the required space and call ISGlobalToLocalMappingApply() 423e182c471SBarry Smith a second time to set the values. 424d4bb536fSBarry Smith 425b9cd556bSLois Curfman McInnes Notes: 426b9cd556bSLois Curfman McInnes Either nout or idxout may be PETSC_NULL. idx and idxout may be identical. 427d4bb536fSBarry Smith 4280f5bd95cSBarry Smith This is not scalable in memory usage. Each processor requires O(Nglobal) size 4290f5bd95cSBarry Smith array to compute these. 4300f5bd95cSBarry Smith 431a997ad1aSLois Curfman McInnes Level: advanced 432a997ad1aSLois Curfman McInnes 433273d9f13SBarry Smith Concepts: mapping^global to local 434d4bb536fSBarry Smith 435d4bb536fSBarry Smith .seealso: ISLocalToGlobalMappingApply(), ISLocalToGlobalMappingCreate(), 436d4bb536fSBarry Smith ISLocalToGlobalMappingDestroy() 437d4bb536fSBarry Smith @*/ 438dfbe8321SBarry Smith PetscErrorCode ISGlobalToLocalMappingApply(ISLocalToGlobalMapping mapping,ISGlobalToLocalMappingType type, 439987e4450SSatish Balay int n,const int idx[],int *nout,int idxout[]) 440d4bb536fSBarry Smith { 441*6849ba73SBarry Smith int i,*globals,nf = 0,tmp,start,end; 442*6849ba73SBarry Smith PetscErrorCode ierr; 443d4bb536fSBarry Smith 4443a40ed3dSBarry Smith PetscFunctionBegin; 445d4bb536fSBarry Smith if (!mapping->globals) { 446d4bb536fSBarry Smith ierr = ISGlobalToLocalMappingSetUp_Private(mapping);CHKERRQ(ierr); 447d4bb536fSBarry Smith } 448d4bb536fSBarry Smith globals = mapping->globals; 449d4bb536fSBarry Smith start = mapping->globalstart; 450d4bb536fSBarry Smith end = mapping->globalend; 451d4bb536fSBarry Smith 452d4bb536fSBarry Smith if (type == IS_GTOLM_MASK) { 453d4bb536fSBarry Smith if (idxout) { 454d4bb536fSBarry Smith for (i=0; i<n; i++) { 455d4bb536fSBarry Smith if (idx[i] < 0) idxout[i] = idx[i]; 456d4bb536fSBarry Smith else if (idx[i] < start) idxout[i] = -1; 457d4bb536fSBarry Smith else if (idx[i] > end) idxout[i] = -1; 458d4bb536fSBarry Smith else idxout[i] = globals[idx[i] - start]; 459d4bb536fSBarry Smith } 460d4bb536fSBarry Smith } 461d4bb536fSBarry Smith if (nout) *nout = n; 462d4bb536fSBarry Smith } else { 463d4bb536fSBarry Smith if (idxout) { 464d4bb536fSBarry Smith for (i=0; i<n; i++) { 465d4bb536fSBarry Smith if (idx[i] < 0) continue; 466d4bb536fSBarry Smith if (idx[i] < start) continue; 467d4bb536fSBarry Smith if (idx[i] > end) continue; 468d4bb536fSBarry Smith tmp = globals[idx[i] - start]; 469d4bb536fSBarry Smith if (tmp < 0) continue; 470d4bb536fSBarry Smith idxout[nf++] = tmp; 471d4bb536fSBarry Smith } 472d4bb536fSBarry Smith } else { 473d4bb536fSBarry Smith for (i=0; i<n; i++) { 474d4bb536fSBarry Smith if (idx[i] < 0) continue; 475d4bb536fSBarry Smith if (idx[i] < start) continue; 476d4bb536fSBarry Smith if (idx[i] > end) continue; 477d4bb536fSBarry Smith tmp = globals[idx[i] - start]; 478d4bb536fSBarry Smith if (tmp < 0) continue; 479d4bb536fSBarry Smith nf++; 480d4bb536fSBarry Smith } 481d4bb536fSBarry Smith } 482d4bb536fSBarry Smith if (nout) *nout = nf; 483d4bb536fSBarry Smith } 484d4bb536fSBarry Smith 4853a40ed3dSBarry Smith PetscFunctionReturn(0); 486d4bb536fSBarry Smith } 48790f02eecSBarry Smith 4884a2ae208SSatish Balay #undef __FUNCT__ 4894a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingGetInfo" 49089d82c54SBarry Smith /*@C 49189d82c54SBarry Smith ISLocalToGlobalMappingGetInfo - Gets the neighbor information for each processor and 49289d82c54SBarry Smith each index shared by more than one processor 49389d82c54SBarry Smith 49489d82c54SBarry Smith Collective on ISLocalToGlobalMapping 49589d82c54SBarry Smith 49689d82c54SBarry Smith Input Parameters: 49789d82c54SBarry Smith . mapping - the mapping from local to global indexing 49889d82c54SBarry Smith 49989d82c54SBarry Smith Output Parameter: 50089d82c54SBarry Smith + nproc - number of processors that are connected to this one 50189d82c54SBarry Smith . proc - neighboring processors 50207b52d57SBarry Smith . numproc - number of indices for each subdomain (processor) 50307b52d57SBarry Smith - indices - indices of local nodes shared with neighbor (sorted by global numbering) 50489d82c54SBarry Smith 50589d82c54SBarry Smith Level: advanced 50689d82c54SBarry Smith 507273d9f13SBarry Smith Concepts: mapping^local to global 50889d82c54SBarry Smith 50907b52d57SBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreateIS(), ISLocalToGlobalMappingCreate(), 51007b52d57SBarry Smith ISLocalToGlobalMappingRestoreInfo() 51189d82c54SBarry Smith @*/ 512dfbe8321SBarry Smith PetscErrorCode ISLocalToGlobalMappingGetInfo(ISLocalToGlobalMapping mapping,int *nproc,int *procs[],int *numprocs[],int **indices[]) 51389d82c54SBarry Smith { 514*6849ba73SBarry Smith PetscErrorCode ierr; 515*6849ba73SBarry Smith int i,n = mapping->n,Ng,ng,max = 0,*lindices = mapping->indices; 51627c402fcSBarry Smith int size,rank,*nprocs,*owner,nsends,*sends,j,*starts,nmax,nrecvs,*recvs,proc; 51724cf384cSBarry Smith int tag1,tag2,tag3,cnt,*len,*source,imdex,scale,*ownedsenders,*nownedsenders,rstart,nowned; 51807b52d57SBarry Smith int node,nownedm,nt,*sends2,nsends2,*starts2,*lens2,*dest,nrecvs2,*starts3,*recvs2,k,*bprocs,*tmp; 51924cf384cSBarry Smith int first_procs,first_numprocs,*first_indices; 52089d82c54SBarry Smith MPI_Request *recv_waits,*send_waits; 52130dcb7c9SBarry Smith MPI_Status recv_status,*send_status,*recv_statuses; 52289d82c54SBarry Smith MPI_Comm comm = mapping->comm; 52307b52d57SBarry Smith PetscTruth debug = PETSC_FALSE; 52489d82c54SBarry Smith 52589d82c54SBarry Smith PetscFunctionBegin; 52624cf384cSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 52724cf384cSBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 52824cf384cSBarry Smith if (size == 1) { 52924cf384cSBarry Smith *nproc = 0; 53024cf384cSBarry Smith *procs = PETSC_NULL; 531b0a32e0cSBarry Smith ierr = PetscMalloc(sizeof(int),numprocs);CHKERRQ(ierr); 5321e2105dcSBarry Smith (*numprocs)[0] = 0; 533b0a32e0cSBarry Smith ierr = PetscMalloc(sizeof(int*),indices);CHKERRQ(ierr); 5341e2105dcSBarry Smith (*indices)[0] = PETSC_NULL; 53524cf384cSBarry Smith PetscFunctionReturn(0); 53624cf384cSBarry Smith } 53724cf384cSBarry Smith 538b0a32e0cSBarry Smith ierr = PetscOptionsHasName(PETSC_NULL,"-islocaltoglobalmappinggetinfo_debug",&debug);CHKERRQ(ierr); 53907b52d57SBarry Smith 5403677ff5aSBarry Smith /* 5413677ff5aSBarry Smith Notes on ISLocalToGlobalMappingGetInfo 5423677ff5aSBarry Smith 5433677ff5aSBarry Smith globally owned node - the nodes that have been assigned to this processor in global 5443677ff5aSBarry Smith numbering, just for this routine. 5453677ff5aSBarry Smith 5463677ff5aSBarry Smith nontrivial globally owned node - node assigned to this processor that is on a subdomain 5473677ff5aSBarry Smith boundary (i.e. is has more than one local owner) 5483677ff5aSBarry Smith 5493677ff5aSBarry Smith locally owned node - node that exists on this processors subdomain 5503677ff5aSBarry Smith 5513677ff5aSBarry Smith nontrivial locally owned node - node that is not in the interior (i.e. has more than one 5523677ff5aSBarry Smith local subdomain 5533677ff5aSBarry Smith */ 55424cf384cSBarry Smith ierr = PetscObjectGetNewTag((PetscObject)mapping,&tag1);CHKERRQ(ierr); 55524cf384cSBarry Smith ierr = PetscObjectGetNewTag((PetscObject)mapping,&tag2);CHKERRQ(ierr); 55624cf384cSBarry Smith ierr = PetscObjectGetNewTag((PetscObject)mapping,&tag3);CHKERRQ(ierr); 55789d82c54SBarry Smith 55889d82c54SBarry Smith for (i=0; i<n; i++) { 55989d82c54SBarry Smith if (lindices[i] > max) max = lindices[i]; 56089d82c54SBarry Smith } 56189d82c54SBarry Smith ierr = MPI_Allreduce(&max,&Ng,1,MPI_INT,MPI_MAX,comm);CHKERRQ(ierr); 56278058e43SBarry Smith Ng++; 56389d82c54SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 56489d82c54SBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 565bc8ff85bSBarry Smith scale = Ng/size + 1; 566a2e34c3dSBarry Smith ng = scale; if (rank == size-1) ng = Ng - scale*(size-1); ng = PetscMax(1,ng); 567caba0dd0SBarry Smith rstart = scale*rank; 56889d82c54SBarry Smith 56989d82c54SBarry Smith /* determine ownership ranges of global indices */ 570b0a32e0cSBarry Smith ierr = PetscMalloc((2*size+1)*sizeof(int),&nprocs);CHKERRQ(ierr); 5712880cf29SBarry Smith ierr = PetscMemzero(nprocs,2*size*sizeof(int));CHKERRQ(ierr); 57289d82c54SBarry Smith 57389d82c54SBarry Smith /* determine owners of each local node */ 574b0a32e0cSBarry Smith ierr = PetscMalloc((n+1)*sizeof(int),&owner);CHKERRQ(ierr); 57589d82c54SBarry Smith for (i=0; i<n; i++) { 5763677ff5aSBarry Smith proc = lindices[i]/scale; /* processor that globally owns this index */ 57727c402fcSBarry Smith nprocs[2*proc+1] = 1; /* processor globally owns at least one of ours */ 5783677ff5aSBarry Smith owner[i] = proc; 57927c402fcSBarry Smith nprocs[2*proc]++; /* count of how many that processor globally owns of ours */ 58089d82c54SBarry Smith } 58127c402fcSBarry Smith nsends = 0; for (i=0; i<size; i++) nsends += nprocs[2*i+1]; 582b0a32e0cSBarry Smith PetscLogInfo(0,"ISLocalToGlobalMappingGetInfo: Number of global owners for my local data %d\n",nsends); 58389d82c54SBarry Smith 58489d82c54SBarry Smith /* inform other processors of number of messages and max length*/ 58527c402fcSBarry Smith ierr = PetscMaxSum(comm,nprocs,&nmax,&nrecvs);CHKERRQ(ierr); 586b0a32e0cSBarry Smith PetscLogInfo(0,"ISLocalToGlobalMappingGetInfo: Number of local owners for my global data %d\n",nrecvs); 58789d82c54SBarry Smith 58889d82c54SBarry Smith /* post receives for owned rows */ 589b0a32e0cSBarry Smith ierr = PetscMalloc((2*nrecvs+1)*(nmax+1)*sizeof(int),&recvs);CHKERRQ(ierr); 590b0a32e0cSBarry Smith ierr = PetscMalloc((nrecvs+1)*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr); 59189d82c54SBarry Smith for (i=0; i<nrecvs; i++) { 59224cf384cSBarry Smith ierr = MPI_Irecv(recvs+2*nmax*i,2*nmax,MPI_INT,MPI_ANY_SOURCE,tag1,comm,recv_waits+i);CHKERRQ(ierr); 59389d82c54SBarry Smith } 59489d82c54SBarry Smith 59589d82c54SBarry Smith /* pack messages containing lists of local nodes to owners */ 596b0a32e0cSBarry Smith ierr = PetscMalloc((2*n+1)*sizeof(int),&sends);CHKERRQ(ierr); 597b0a32e0cSBarry Smith ierr = PetscMalloc((size+1)*sizeof(int),&starts);CHKERRQ(ierr); 59889d82c54SBarry Smith starts[0] = 0; 59927c402fcSBarry Smith for (i=1; i<size; i++) { starts[i] = starts[i-1] + 2*nprocs[2*i-2];} 60089d82c54SBarry Smith for (i=0; i<n; i++) { 60189d82c54SBarry Smith sends[starts[owner[i]]++] = lindices[i]; 60230dcb7c9SBarry Smith sends[starts[owner[i]]++] = i; 60389d82c54SBarry Smith } 60489d82c54SBarry Smith ierr = PetscFree(owner);CHKERRQ(ierr); 60589d82c54SBarry Smith starts[0] = 0; 60627c402fcSBarry Smith for (i=1; i<size; i++) { starts[i] = starts[i-1] + 2*nprocs[2*i-2];} 60789d82c54SBarry Smith 60889d82c54SBarry Smith /* send the messages */ 609b0a32e0cSBarry Smith ierr = PetscMalloc((nsends+1)*sizeof(MPI_Request),&send_waits);CHKERRQ(ierr); 610b0a32e0cSBarry Smith ierr = PetscMalloc((nsends+1)*sizeof(int),&dest);CHKERRQ(ierr); 61189d82c54SBarry Smith cnt = 0; 61289d82c54SBarry Smith for (i=0; i<size; i++) { 61327c402fcSBarry Smith if (nprocs[2*i]) { 61427c402fcSBarry Smith ierr = MPI_Isend(sends+starts[i],2*nprocs[2*i],MPI_INT,i,tag1,comm,send_waits+cnt);CHKERRQ(ierr); 61530dcb7c9SBarry Smith dest[cnt] = i; 61689d82c54SBarry Smith cnt++; 61789d82c54SBarry Smith } 61889d82c54SBarry Smith } 61989d82c54SBarry Smith ierr = PetscFree(starts);CHKERRQ(ierr); 62089d82c54SBarry Smith 62189d82c54SBarry Smith /* wait on receives */ 622b0a32e0cSBarry Smith ierr = PetscMalloc((2*nrecvs+1)*sizeof(int),&source);CHKERRQ(ierr); 62389d82c54SBarry Smith len = source + nrecvs; 62489d82c54SBarry Smith cnt = nrecvs; 625b0a32e0cSBarry Smith ierr = PetscMalloc((ng+1)*sizeof(int),&nownedsenders);CHKERRQ(ierr); 626caba0dd0SBarry Smith ierr = PetscMemzero(nownedsenders,ng*sizeof(int));CHKERRQ(ierr); 62789d82c54SBarry Smith while (cnt) { 62889d82c54SBarry Smith ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr); 62989d82c54SBarry Smith /* unpack receives into our local space */ 63089d82c54SBarry Smith ierr = MPI_Get_count(&recv_status,MPI_INT,&len[imdex]);CHKERRQ(ierr); 63189d82c54SBarry Smith source[imdex] = recv_status.MPI_SOURCE; 63230dcb7c9SBarry Smith len[imdex] = len[imdex]/2; 633caba0dd0SBarry Smith /* count how many local owners for each of my global owned indices */ 63430dcb7c9SBarry Smith for (i=0; i<len[imdex]; i++) nownedsenders[recvs[2*imdex*nmax+2*i]-rstart]++; 63589d82c54SBarry Smith cnt--; 63689d82c54SBarry Smith } 63789d82c54SBarry Smith ierr = PetscFree(recv_waits);CHKERRQ(ierr); 63889d82c54SBarry Smith 63930dcb7c9SBarry Smith /* count how many globally owned indices are on an edge multiplied by how many processors own them. */ 640bc8ff85bSBarry Smith nowned = 0; 641bc8ff85bSBarry Smith nownedm = 0; 642bc8ff85bSBarry Smith for (i=0; i<ng; i++) { 643bc8ff85bSBarry Smith if (nownedsenders[i] > 1) {nownedm += nownedsenders[i]; nowned++;} 644bc8ff85bSBarry Smith } 645bc8ff85bSBarry Smith 646bc8ff85bSBarry Smith /* create single array to contain rank of all local owners of each globally owned index */ 647b0a32e0cSBarry Smith ierr = PetscMalloc((nownedm+1)*sizeof(int),&ownedsenders);CHKERRQ(ierr); 648b0a32e0cSBarry Smith ierr = PetscMalloc((ng+1)*sizeof(int),&starts);CHKERRQ(ierr); 649bc8ff85bSBarry Smith starts[0] = 0; 650bc8ff85bSBarry Smith for (i=1; i<ng; i++) { 651bc8ff85bSBarry Smith if (nownedsenders[i-1] > 1) starts[i] = starts[i-1] + nownedsenders[i-1]; 652bc8ff85bSBarry Smith else starts[i] = starts[i-1]; 653bc8ff85bSBarry Smith } 654bc8ff85bSBarry Smith 65530dcb7c9SBarry Smith /* for each nontrival globally owned node list all arriving processors */ 656bc8ff85bSBarry Smith for (i=0; i<nrecvs; i++) { 657bc8ff85bSBarry Smith for (j=0; j<len[i]; j++) { 65830dcb7c9SBarry Smith node = recvs[2*i*nmax+2*j]-rstart; 659bc8ff85bSBarry Smith if (nownedsenders[node] > 1) { 660bc8ff85bSBarry Smith ownedsenders[starts[node]++] = source[i]; 661bc8ff85bSBarry Smith } 662bc8ff85bSBarry Smith } 663bc8ff85bSBarry Smith } 664bc8ff85bSBarry Smith 66507b52d57SBarry Smith if (debug) { /* ----------------------------------- */ 66630dcb7c9SBarry Smith starts[0] = 0; 66730dcb7c9SBarry Smith for (i=1; i<ng; i++) { 66830dcb7c9SBarry Smith if (nownedsenders[i-1] > 1) starts[i] = starts[i-1] + nownedsenders[i-1]; 66930dcb7c9SBarry Smith else starts[i] = starts[i-1]; 67030dcb7c9SBarry Smith } 67130dcb7c9SBarry Smith for (i=0; i<ng; i++) { 67230dcb7c9SBarry Smith if (nownedsenders[i] > 1) { 67330dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"[%d] global node %d local owner processors: ",rank,i+rstart);CHKERRQ(ierr); 67430dcb7c9SBarry Smith for (j=0; j<nownedsenders[i]; j++) { 67530dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"%d ",ownedsenders[starts[i]+j]);CHKERRQ(ierr); 67630dcb7c9SBarry Smith } 67730dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"\n");CHKERRQ(ierr); 67830dcb7c9SBarry Smith } 67930dcb7c9SBarry Smith } 68030dcb7c9SBarry Smith ierr = PetscSynchronizedFlush(comm);CHKERRQ(ierr); 68107b52d57SBarry Smith }/* ----------------------------------- */ 68230dcb7c9SBarry Smith 6833677ff5aSBarry Smith /* wait on original sends */ 6843a96401aSBarry Smith if (nsends) { 685b0a32e0cSBarry Smith ierr = PetscMalloc(nsends*sizeof(MPI_Status),&send_status);CHKERRQ(ierr); 6863a96401aSBarry Smith ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr); 6873a96401aSBarry Smith ierr = PetscFree(send_status);CHKERRQ(ierr); 6883a96401aSBarry Smith } 68989d82c54SBarry Smith ierr = PetscFree(send_waits);CHKERRQ(ierr); 6903a96401aSBarry Smith ierr = PetscFree(sends);CHKERRQ(ierr); 6913677ff5aSBarry Smith ierr = PetscFree(nprocs);CHKERRQ(ierr); 6923677ff5aSBarry Smith 6933677ff5aSBarry Smith /* pack messages to send back to local owners */ 69430dcb7c9SBarry Smith starts[0] = 0; 69530dcb7c9SBarry Smith for (i=1; i<ng; i++) { 69630dcb7c9SBarry Smith if (nownedsenders[i-1] > 1) starts[i] = starts[i-1] + nownedsenders[i-1]; 69730dcb7c9SBarry Smith else starts[i] = starts[i-1]; 69830dcb7c9SBarry Smith } 69930dcb7c9SBarry Smith nsends2 = nrecvs; 700b0a32e0cSBarry Smith ierr = PetscMalloc((nsends2+1)*sizeof(int),&nprocs);CHKERRQ(ierr); /* length of each message */ 70130dcb7c9SBarry Smith for (i=0; i<nrecvs; i++) { 70230dcb7c9SBarry Smith nprocs[i] = 1; 70330dcb7c9SBarry Smith for (j=0; j<len[i]; j++) { 70430dcb7c9SBarry Smith node = recvs[2*i*nmax+2*j]-rstart; 70530dcb7c9SBarry Smith if (nownedsenders[node] > 1) { 70630dcb7c9SBarry Smith nprocs[i] += 2 + nownedsenders[node]; 70730dcb7c9SBarry Smith } 70830dcb7c9SBarry Smith } 70930dcb7c9SBarry Smith } 71030dcb7c9SBarry Smith nt = 0; for (i=0; i<nsends2; i++) nt += nprocs[i]; 711b0a32e0cSBarry Smith ierr = PetscMalloc((nt+1)*sizeof(int),&sends2);CHKERRQ(ierr); 712b0a32e0cSBarry Smith ierr = PetscMalloc((nsends2+1)*sizeof(int),&starts2);CHKERRQ(ierr); 71330dcb7c9SBarry Smith starts2[0] = 0; for (i=1; i<nsends2; i++) starts2[i] = starts2[i-1] + nprocs[i-1]; 71430dcb7c9SBarry Smith /* 71530dcb7c9SBarry Smith Each message is 1 + nprocs[i] long, and consists of 71630dcb7c9SBarry Smith (0) the number of nodes being sent back 71730dcb7c9SBarry Smith (1) the local node number, 71830dcb7c9SBarry Smith (2) the number of processors sharing it, 71930dcb7c9SBarry Smith (3) the processors sharing it 72030dcb7c9SBarry Smith */ 72130dcb7c9SBarry Smith for (i=0; i<nsends2; i++) { 72230dcb7c9SBarry Smith cnt = 1; 72330dcb7c9SBarry Smith sends2[starts2[i]] = 0; 72430dcb7c9SBarry Smith for (j=0; j<len[i]; j++) { 72530dcb7c9SBarry Smith node = recvs[2*i*nmax+2*j]-rstart; 72630dcb7c9SBarry Smith if (nownedsenders[node] > 1) { 72730dcb7c9SBarry Smith sends2[starts2[i]]++; 72830dcb7c9SBarry Smith sends2[starts2[i]+cnt++] = recvs[2*i*nmax+2*j+1]; 72930dcb7c9SBarry Smith sends2[starts2[i]+cnt++] = nownedsenders[node]; 73030dcb7c9SBarry Smith ierr = PetscMemcpy(&sends2[starts2[i]+cnt],&ownedsenders[starts[node]],nownedsenders[node]*sizeof(int));CHKERRQ(ierr); 73130dcb7c9SBarry Smith cnt += nownedsenders[node]; 73230dcb7c9SBarry Smith } 73330dcb7c9SBarry Smith } 73430dcb7c9SBarry Smith } 73530dcb7c9SBarry Smith 73630dcb7c9SBarry Smith /* send the message lengths */ 73730dcb7c9SBarry Smith for (i=0; i<nsends2; i++) { 73824cf384cSBarry Smith ierr = MPI_Send(&nprocs[i],1,MPI_INT,source[i],tag2,comm);CHKERRQ(ierr); 73930dcb7c9SBarry Smith } 74030dcb7c9SBarry Smith 74130dcb7c9SBarry Smith /* receive the message lengths */ 74230dcb7c9SBarry Smith nrecvs2 = nsends; 743b0a32e0cSBarry Smith ierr = PetscMalloc((nrecvs2+1)*sizeof(int),&lens2);CHKERRQ(ierr); 744b0a32e0cSBarry Smith ierr = PetscMalloc((nrecvs2+1)*sizeof(int),&starts3);CHKERRQ(ierr); 74530dcb7c9SBarry Smith nt = 0; 74630dcb7c9SBarry Smith for (i=0; i<nrecvs2; i++) { 74724cf384cSBarry Smith ierr = MPI_Recv(&lens2[i],1,MPI_INT,dest[i],tag2,comm,&recv_status);CHKERRQ(ierr); 74830dcb7c9SBarry Smith nt += lens2[i]; 74930dcb7c9SBarry Smith } 75030dcb7c9SBarry Smith starts3[0] = 0; 75130dcb7c9SBarry Smith for (i=0; i<nrecvs2-1; i++) { 75230dcb7c9SBarry Smith starts3[i+1] = starts3[i] + lens2[i]; 75330dcb7c9SBarry Smith } 754b0a32e0cSBarry Smith ierr = PetscMalloc((nt+1)*sizeof(int),&recvs2);CHKERRQ(ierr); 755b0a32e0cSBarry Smith ierr = PetscMalloc((nrecvs2+1)*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr); 75652b72c4aSBarry Smith for (i=0; i<nrecvs2; i++) { 75724cf384cSBarry Smith ierr = MPI_Irecv(recvs2+starts3[i],lens2[i],MPI_INT,dest[i],tag3,comm,recv_waits+i);CHKERRQ(ierr); 75830dcb7c9SBarry Smith } 75930dcb7c9SBarry Smith 76030dcb7c9SBarry Smith /* send the messages */ 761b0a32e0cSBarry Smith ierr = PetscMalloc((nsends2+1)*sizeof(MPI_Request),&send_waits);CHKERRQ(ierr); 76230dcb7c9SBarry Smith for (i=0; i<nsends2; i++) { 76324cf384cSBarry Smith ierr = MPI_Isend(sends2+starts2[i],nprocs[i],MPI_INT,source[i],tag3,comm,send_waits+i);CHKERRQ(ierr); 76430dcb7c9SBarry Smith } 76530dcb7c9SBarry Smith 76630dcb7c9SBarry Smith /* wait on receives */ 767b0a32e0cSBarry Smith ierr = PetscMalloc((nrecvs2+1)*sizeof(MPI_Status),&recv_statuses);CHKERRQ(ierr); 76830dcb7c9SBarry Smith ierr = MPI_Waitall(nrecvs2,recv_waits,recv_statuses);CHKERRQ(ierr); 76930dcb7c9SBarry Smith ierr = PetscFree(recv_statuses);CHKERRQ(ierr); 77030dcb7c9SBarry Smith ierr = PetscFree(recv_waits);CHKERRQ(ierr); 77130dcb7c9SBarry Smith ierr = PetscFree(nprocs);CHKERRQ(ierr); 77230dcb7c9SBarry Smith 77307b52d57SBarry Smith if (debug) { /* ----------------------------------- */ 77430dcb7c9SBarry Smith cnt = 0; 77530dcb7c9SBarry Smith for (i=0; i<nrecvs2; i++) { 77630dcb7c9SBarry Smith nt = recvs2[cnt++]; 77730dcb7c9SBarry Smith for (j=0; j<nt; j++) { 77830dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"[%d] local node %d number of subdomains %d: ",rank,recvs2[cnt],recvs2[cnt+1]);CHKERRQ(ierr); 77930dcb7c9SBarry Smith for (k=0; k<recvs2[cnt+1]; k++) { 78030dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"%d ",recvs2[cnt+2+k]);CHKERRQ(ierr); 78130dcb7c9SBarry Smith } 78230dcb7c9SBarry Smith cnt += 2 + recvs2[cnt+1]; 78330dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"\n");CHKERRQ(ierr); 78430dcb7c9SBarry Smith } 78530dcb7c9SBarry Smith } 78630dcb7c9SBarry Smith ierr = PetscSynchronizedFlush(comm);CHKERRQ(ierr); 78707b52d57SBarry Smith } /* ----------------------------------- */ 78830dcb7c9SBarry Smith 78930dcb7c9SBarry Smith /* count number subdomains for each local node */ 790b0a32e0cSBarry Smith ierr = PetscMalloc(size*sizeof(int),&nprocs);CHKERRQ(ierr); 79130dcb7c9SBarry Smith ierr = PetscMemzero(nprocs,size*sizeof(int));CHKERRQ(ierr); 79230dcb7c9SBarry Smith cnt = 0; 79330dcb7c9SBarry Smith for (i=0; i<nrecvs2; i++) { 79430dcb7c9SBarry Smith nt = recvs2[cnt++]; 79530dcb7c9SBarry Smith for (j=0; j<nt; j++) { 79630dcb7c9SBarry Smith for (k=0; k<recvs2[cnt+1]; k++) { 79730dcb7c9SBarry Smith nprocs[recvs2[cnt+2+k]]++; 79830dcb7c9SBarry Smith } 79930dcb7c9SBarry Smith cnt += 2 + recvs2[cnt+1]; 80030dcb7c9SBarry Smith } 80130dcb7c9SBarry Smith } 80230dcb7c9SBarry Smith nt = 0; for (i=0; i<size; i++) nt += (nprocs[i] > 0); 80330dcb7c9SBarry Smith *nproc = nt; 804b0a32e0cSBarry Smith ierr = PetscMalloc((nt+1)*sizeof(int),procs);CHKERRQ(ierr); 805b0a32e0cSBarry Smith ierr = PetscMalloc((nt+1)*sizeof(int),numprocs);CHKERRQ(ierr); 806b0a32e0cSBarry Smith ierr = PetscMalloc((nt+1)*sizeof(int*),indices);CHKERRQ(ierr); 807b0a32e0cSBarry Smith ierr = PetscMalloc(size*sizeof(int),&bprocs);CHKERRQ(ierr); 80830dcb7c9SBarry Smith cnt = 0; 80930dcb7c9SBarry Smith for (i=0; i<size; i++) { 81030dcb7c9SBarry Smith if (nprocs[i] > 0) { 81130dcb7c9SBarry Smith bprocs[i] = cnt; 81230dcb7c9SBarry Smith (*procs)[cnt] = i; 81330dcb7c9SBarry Smith (*numprocs)[cnt] = nprocs[i]; 814b0a32e0cSBarry Smith ierr = PetscMalloc(nprocs[i]*sizeof(int),&(*indices)[cnt]);CHKERRQ(ierr); 81530dcb7c9SBarry Smith cnt++; 81630dcb7c9SBarry Smith } 81730dcb7c9SBarry Smith } 81830dcb7c9SBarry Smith 81930dcb7c9SBarry Smith /* make the list of subdomains for each nontrivial local node */ 82030dcb7c9SBarry Smith ierr = PetscMemzero(*numprocs,nt*sizeof(int));CHKERRQ(ierr); 82130dcb7c9SBarry Smith cnt = 0; 82230dcb7c9SBarry Smith for (i=0; i<nrecvs2; i++) { 82330dcb7c9SBarry Smith nt = recvs2[cnt++]; 82430dcb7c9SBarry Smith for (j=0; j<nt; j++) { 82530dcb7c9SBarry Smith for (k=0; k<recvs2[cnt+1]; k++) { 82630dcb7c9SBarry Smith (*indices)[bprocs[recvs2[cnt+2+k]]][(*numprocs)[bprocs[recvs2[cnt+2+k]]]++] = recvs2[cnt]; 82730dcb7c9SBarry Smith } 82830dcb7c9SBarry Smith cnt += 2 + recvs2[cnt+1]; 82930dcb7c9SBarry Smith } 83030dcb7c9SBarry Smith } 83130dcb7c9SBarry Smith ierr = PetscFree(bprocs);CHKERRQ(ierr); 83207b52d57SBarry Smith ierr = PetscFree(recvs2);CHKERRQ(ierr); 83330dcb7c9SBarry Smith 83407b52d57SBarry Smith /* sort the node indexing by their global numbers */ 83507b52d57SBarry Smith nt = *nproc; 83607b52d57SBarry Smith for (i=0; i<nt; i++) { 837b0a32e0cSBarry Smith ierr = PetscMalloc(((*numprocs)[i])*sizeof(int),&tmp);CHKERRQ(ierr); 83807b52d57SBarry Smith for (j=0; j<(*numprocs)[i]; j++) { 83907b52d57SBarry Smith tmp[j] = lindices[(*indices)[i][j]]; 84007b52d57SBarry Smith } 84107b52d57SBarry Smith ierr = PetscSortIntWithArray((*numprocs)[i],tmp,(*indices)[i]);CHKERRQ(ierr); 84207b52d57SBarry Smith ierr = PetscFree(tmp);CHKERRQ(ierr); 84307b52d57SBarry Smith } 84407b52d57SBarry Smith 84507b52d57SBarry Smith if (debug) { /* ----------------------------------- */ 84630dcb7c9SBarry Smith nt = *nproc; 84730dcb7c9SBarry Smith for (i=0; i<nt; i++) { 84830dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"[%d] subdomain %d number of indices %d: ",rank,(*procs)[i],(*numprocs)[i]);CHKERRQ(ierr); 84930dcb7c9SBarry Smith for (j=0; j<(*numprocs)[i]; j++) { 85030dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"%d ",(*indices)[i][j]);CHKERRQ(ierr); 85130dcb7c9SBarry Smith } 85230dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"\n");CHKERRQ(ierr); 85330dcb7c9SBarry Smith } 85430dcb7c9SBarry Smith ierr = PetscSynchronizedFlush(comm);CHKERRQ(ierr); 85507b52d57SBarry Smith } /* ----------------------------------- */ 85630dcb7c9SBarry Smith 85730dcb7c9SBarry Smith /* wait on sends */ 85830dcb7c9SBarry Smith if (nsends2) { 859b0a32e0cSBarry Smith ierr = PetscMalloc(nsends2*sizeof(MPI_Status),&send_status);CHKERRQ(ierr); 86030dcb7c9SBarry Smith ierr = MPI_Waitall(nsends2,send_waits,send_status);CHKERRQ(ierr); 86130dcb7c9SBarry Smith ierr = PetscFree(send_status);CHKERRQ(ierr); 86230dcb7c9SBarry Smith } 86330dcb7c9SBarry Smith 86430dcb7c9SBarry Smith ierr = PetscFree(starts3);CHKERRQ(ierr); 86530dcb7c9SBarry Smith ierr = PetscFree(dest);CHKERRQ(ierr); 86630dcb7c9SBarry Smith ierr = PetscFree(send_waits);CHKERRQ(ierr); 8673677ff5aSBarry Smith 868bc8ff85bSBarry Smith ierr = PetscFree(nownedsenders);CHKERRQ(ierr); 869bc8ff85bSBarry Smith ierr = PetscFree(ownedsenders);CHKERRQ(ierr); 870bc8ff85bSBarry Smith ierr = PetscFree(starts);CHKERRQ(ierr); 87130dcb7c9SBarry Smith ierr = PetscFree(starts2);CHKERRQ(ierr); 87230dcb7c9SBarry Smith ierr = PetscFree(lens2);CHKERRQ(ierr); 87389d82c54SBarry Smith 87489d82c54SBarry Smith ierr = PetscFree(source);CHKERRQ(ierr); 87589d82c54SBarry Smith ierr = PetscFree(recvs);CHKERRQ(ierr); 8763a96401aSBarry Smith ierr = PetscFree(nprocs);CHKERRQ(ierr); 87730dcb7c9SBarry Smith ierr = PetscFree(sends2);CHKERRQ(ierr); 87824cf384cSBarry Smith 87924cf384cSBarry Smith /* put the information about myself as the first entry in the list */ 88024cf384cSBarry Smith first_procs = (*procs)[0]; 88124cf384cSBarry Smith first_numprocs = (*numprocs)[0]; 88224cf384cSBarry Smith first_indices = (*indices)[0]; 88324cf384cSBarry Smith for (i=0; i<*nproc; i++) { 88424cf384cSBarry Smith if ((*procs)[i] == rank) { 88524cf384cSBarry Smith (*procs)[0] = (*procs)[i]; 88624cf384cSBarry Smith (*numprocs)[0] = (*numprocs)[i]; 88724cf384cSBarry Smith (*indices)[0] = (*indices)[i]; 88824cf384cSBarry Smith (*procs)[i] = first_procs; 88924cf384cSBarry Smith (*numprocs)[i] = first_numprocs; 89024cf384cSBarry Smith (*indices)[i] = first_indices; 89124cf384cSBarry Smith break; 89224cf384cSBarry Smith } 89324cf384cSBarry Smith } 89424cf384cSBarry Smith 89589d82c54SBarry Smith PetscFunctionReturn(0); 89689d82c54SBarry Smith } 89789d82c54SBarry Smith 8984a2ae208SSatish Balay #undef __FUNCT__ 8994a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingRestoreInfo" 90007b52d57SBarry Smith /*@C 90107b52d57SBarry Smith ISLocalToGlobalMappingRestoreInfo - Frees the memory allocated by ISLocalToGlobalMappingGetInfo() 90289d82c54SBarry Smith 90307b52d57SBarry Smith Collective on ISLocalToGlobalMapping 90407b52d57SBarry Smith 90507b52d57SBarry Smith Input Parameters: 90607b52d57SBarry Smith . mapping - the mapping from local to global indexing 90707b52d57SBarry Smith 90807b52d57SBarry Smith Output Parameter: 90907b52d57SBarry Smith + nproc - number of processors that are connected to this one 91007b52d57SBarry Smith . proc - neighboring processors 91107b52d57SBarry Smith . numproc - number of indices for each processor 91207b52d57SBarry Smith - indices - indices of local nodes shared with neighbor (sorted by global numbering) 91307b52d57SBarry Smith 91407b52d57SBarry Smith Level: advanced 91507b52d57SBarry Smith 91607b52d57SBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreateIS(), ISLocalToGlobalMappingCreate(), 91707b52d57SBarry Smith ISLocalToGlobalMappingGetInfo() 91807b52d57SBarry Smith @*/ 919dfbe8321SBarry Smith PetscErrorCode ISLocalToGlobalMappingRestoreInfo(ISLocalToGlobalMapping mapping,int *nproc,int *procs[],int *numprocs[],int **indices[]) 92007b52d57SBarry Smith { 921*6849ba73SBarry Smith PetscErrorCode ierr; 922*6849ba73SBarry Smith int i; 92307b52d57SBarry Smith 92407b52d57SBarry Smith PetscFunctionBegin; 92500ff320aSBarry Smith if (*procs) {ierr = PetscFree(*procs);CHKERRQ(ierr);} 92600ff320aSBarry Smith if (*numprocs) {ierr = PetscFree(*numprocs);CHKERRQ(ierr);} 92700ff320aSBarry Smith if (*indices) { 92800ff320aSBarry Smith if ((*indices)[0]) {ierr = PetscFree((*indices)[0]);CHKERRQ(ierr);} 92900ff320aSBarry Smith for (i=1; i<*nproc; i++) { 93024cf384cSBarry Smith if ((*indices)[i]) {ierr = PetscFree((*indices)[i]);CHKERRQ(ierr);} 93107b52d57SBarry Smith } 93207b52d57SBarry Smith ierr = PetscFree(*indices);CHKERRQ(ierr); 93324cf384cSBarry Smith } 93407b52d57SBarry Smith PetscFunctionReturn(0); 93507b52d57SBarry Smith } 93689d82c54SBarry Smith 937bc8ff85bSBarry Smith 938bc8ff85bSBarry Smith 939bc8ff85bSBarry Smith 940bc8ff85bSBarry Smith 941bc8ff85bSBarry Smith 942bc8ff85bSBarry Smith 943bc8ff85bSBarry Smith 944bc8ff85bSBarry Smith 945bc8ff85bSBarry Smith 946bc8ff85bSBarry Smith 947bc8ff85bSBarry Smith 948bc8ff85bSBarry Smith 949bc8ff85bSBarry Smith 950bc8ff85bSBarry Smith 951bc8ff85bSBarry Smith 952bc8ff85bSBarry Smith 95324cf384cSBarry Smith 954