12362add9SBarry Smith 2b45d2f2cSJed Brown #include <petsc-private/isimpl.h> /*I "petscis.h" I*/ 30c312b8eSJed Brown #include <petscsf.h> 4665c2dedSJed Brown #include <petscviewer.h> 52362add9SBarry Smith 67087cfbeSBarry Smith PetscClassId IS_LTOGM_CLASSID; 78e58c17dSMatthew Knepley 84a2ae208SSatish Balay #undef __FUNCT__ 9*743c9b42SStefano Zampini #define __FUNCT__ "ISG2LMapApply" 10186d4ecdSBarry Smith PetscErrorCode ISG2LMapApply(ISLocalToGlobalMapping mapping,PetscInt n,const PetscInt in[],PetscInt out[]) 11186d4ecdSBarry Smith { 12186d4ecdSBarry Smith PetscErrorCode ierr; 13*743c9b42SStefano Zampini PetscInt i,start,end; 14186d4ecdSBarry Smith 15186d4ecdSBarry Smith PetscFunctionBegin; 16186d4ecdSBarry Smith if (!mapping->globals) { 17186d4ecdSBarry Smith ierr = ISGlobalToLocalMappingApply(mapping,IS_GTOLM_MASK,0,0,0,0);CHKERRQ(ierr); 18186d4ecdSBarry Smith } 19*743c9b42SStefano Zampini start = mapping->globalstart; 20*743c9b42SStefano Zampini end = mapping->globalend; 21186d4ecdSBarry Smith for (i=0; i<n; i++) { 22186d4ecdSBarry Smith if (in[i] < 0) out[i] = in[i]; 23186d4ecdSBarry Smith else if (in[i] < start) out[i] = -1; 24186d4ecdSBarry Smith else if (in[i] > end) out[i] = -1; 25*743c9b42SStefano Zampini else out[i] = mapping->globals[in[i] - start]; 26186d4ecdSBarry Smith } 27186d4ecdSBarry Smith PetscFunctionReturn(0); 28186d4ecdSBarry Smith } 29186d4ecdSBarry Smith 30186d4ecdSBarry Smith 31186d4ecdSBarry Smith #undef __FUNCT__ 324a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingGetSize" 333b9aefa3SBarry Smith /*@C 343b9aefa3SBarry Smith ISLocalToGlobalMappingGetSize - Gets the local size of a local to global mapping. 353b9aefa3SBarry Smith 363b9aefa3SBarry Smith Not Collective 373b9aefa3SBarry Smith 383b9aefa3SBarry Smith Input Parameter: 393b9aefa3SBarry Smith . ltog - local to global mapping 403b9aefa3SBarry Smith 413b9aefa3SBarry Smith Output Parameter: 423b9aefa3SBarry Smith . n - the number of entries in the local mapping 433b9aefa3SBarry Smith 443b9aefa3SBarry Smith Level: advanced 453b9aefa3SBarry Smith 46273d9f13SBarry Smith Concepts: mapping^local to global 473b9aefa3SBarry Smith 483b9aefa3SBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreate() 493b9aefa3SBarry Smith @*/ 507087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingGetSize(ISLocalToGlobalMapping mapping,PetscInt *n) 513b9aefa3SBarry Smith { 523b9aefa3SBarry Smith PetscFunctionBegin; 530700a824SBarry Smith PetscValidHeaderSpecific(mapping,IS_LTOGM_CLASSID,1); 544482741eSBarry Smith PetscValidIntPointer(n,2); 553b9aefa3SBarry Smith *n = mapping->n; 563b9aefa3SBarry Smith PetscFunctionReturn(0); 573b9aefa3SBarry Smith } 583b9aefa3SBarry Smith 594a2ae208SSatish Balay #undef __FUNCT__ 604a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingView" 615a5d4f66SBarry Smith /*@C 625a5d4f66SBarry Smith ISLocalToGlobalMappingView - View a local to global mapping 635a5d4f66SBarry Smith 64b9cd556bSLois Curfman McInnes Not Collective 65b9cd556bSLois Curfman McInnes 665a5d4f66SBarry Smith Input Parameters: 673b9aefa3SBarry Smith + ltog - local to global mapping 683b9aefa3SBarry Smith - viewer - viewer 695a5d4f66SBarry Smith 70a997ad1aSLois Curfman McInnes Level: advanced 71a997ad1aSLois Curfman McInnes 72273d9f13SBarry Smith Concepts: mapping^local to global 735a5d4f66SBarry Smith 745a5d4f66SBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreate() 755a5d4f66SBarry Smith @*/ 767087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingView(ISLocalToGlobalMapping mapping,PetscViewer viewer) 775a5d4f66SBarry Smith { 7832dcc486SBarry Smith PetscInt i; 7932dcc486SBarry Smith PetscMPIInt rank; 80ace3abfcSBarry Smith PetscBool iascii; 816849ba73SBarry Smith PetscErrorCode ierr; 825a5d4f66SBarry Smith 835a5d4f66SBarry Smith PetscFunctionBegin; 840700a824SBarry Smith PetscValidHeaderSpecific(mapping,IS_LTOGM_CLASSID,1); 853050cee2SBarry Smith if (!viewer) { 86ce94432eSBarry Smith ierr = PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject)mapping),&viewer);CHKERRQ(ierr); 873050cee2SBarry Smith } 880700a824SBarry Smith PetscValidHeaderSpecific(viewer,PETSC_VIEWER_CLASSID,2); 895a5d4f66SBarry Smith 90ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mapping),&rank);CHKERRQ(ierr); 91251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 9232077d6dSBarry Smith if (iascii) { 937b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_TRUE);CHKERRQ(ierr); 945a5d4f66SBarry Smith for (i=0; i<mapping->n; i++) { 95b0a32e0cSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] %d %d\n",rank,i,mapping->indices[i]);CHKERRQ(ierr); 966831982aSBarry Smith } 97b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 987b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_FALSE);CHKERRQ(ierr); 997b23a99aSBarry Smith } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Viewer type %s not supported for ISLocalToGlobalMapping",((PetscObject)viewer)->type_name); 1005a5d4f66SBarry Smith PetscFunctionReturn(0); 1015a5d4f66SBarry Smith } 1025a5d4f66SBarry Smith 1034a2ae208SSatish Balay #undef __FUNCT__ 1044a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingCreateIS" 1051f428162SBarry Smith /*@ 1062bdab257SBarry Smith ISLocalToGlobalMappingCreateIS - Creates a mapping between a local (0 to n) 1072bdab257SBarry Smith ordering and a global parallel ordering. 1082bdab257SBarry Smith 1090f5bd95cSBarry Smith Not collective 110b9cd556bSLois Curfman McInnes 111a997ad1aSLois Curfman McInnes Input Parameter: 1128c03b21aSDmitry Karpeev . is - index set containing the global numbers for each local number 1132bdab257SBarry Smith 114a997ad1aSLois Curfman McInnes Output Parameter: 1152bdab257SBarry Smith . mapping - new mapping data structure 1162bdab257SBarry Smith 117a997ad1aSLois Curfman McInnes Level: advanced 118a997ad1aSLois Curfman McInnes 119273d9f13SBarry Smith Concepts: mapping^local to global 1202bdab257SBarry Smith 1212bdab257SBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreate() 1222bdab257SBarry Smith @*/ 1237087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingCreateIS(IS is,ISLocalToGlobalMapping *mapping) 1242bdab257SBarry Smith { 1256849ba73SBarry Smith PetscErrorCode ierr; 1265d0c19d7SBarry Smith PetscInt n; 1275d0c19d7SBarry Smith const PetscInt *indices; 1282bdab257SBarry Smith MPI_Comm comm; 1293a40ed3dSBarry Smith 1303a40ed3dSBarry Smith PetscFunctionBegin; 1310700a824SBarry Smith PetscValidHeaderSpecific(is,IS_CLASSID,1); 1324482741eSBarry Smith PetscValidPointer(mapping,2); 1332bdab257SBarry Smith 1342bdab257SBarry Smith ierr = PetscObjectGetComm((PetscObject)is,&comm);CHKERRQ(ierr); 1353b9aefa3SBarry Smith ierr = ISGetLocalSize(is,&n);CHKERRQ(ierr); 1362bdab257SBarry Smith ierr = ISGetIndices(is,&indices);CHKERRQ(ierr); 137d5ad8652SBarry Smith ierr = ISLocalToGlobalMappingCreate(comm,n,indices,PETSC_COPY_VALUES,mapping);CHKERRQ(ierr); 1382bdab257SBarry Smith ierr = ISRestoreIndices(is,&indices);CHKERRQ(ierr); 1393a40ed3dSBarry Smith PetscFunctionReturn(0); 1402bdab257SBarry Smith } 1415a5d4f66SBarry Smith 142a4d96a55SJed Brown #undef __FUNCT__ 143a4d96a55SJed Brown #define __FUNCT__ "ISLocalToGlobalMappingCreateSF" 144a4d96a55SJed Brown /*@C 145a4d96a55SJed Brown ISLocalToGlobalMappingCreateSF - Creates a mapping between a local (0 to n) 146a4d96a55SJed Brown ordering and a global parallel ordering. 147a4d96a55SJed Brown 148a4d96a55SJed Brown Collective 149a4d96a55SJed Brown 150a4d96a55SJed Brown Input Parameter: 151a4d96a55SJed Brown + sf - star forest mapping contiguous local indices to (rank, offset) 152a4d96a55SJed Brown - start - first global index on this process 153a4d96a55SJed Brown 154a4d96a55SJed Brown Output Parameter: 155a4d96a55SJed Brown . mapping - new mapping data structure 156a4d96a55SJed Brown 157a4d96a55SJed Brown Level: advanced 158a4d96a55SJed Brown 159a4d96a55SJed Brown Concepts: mapping^local to global 160a4d96a55SJed Brown 161a4d96a55SJed Brown .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreate(), ISLocalToGlobalMappingCreateIS() 162a4d96a55SJed Brown @*/ 163a4d96a55SJed Brown PetscErrorCode ISLocalToGlobalMappingCreateSF(PetscSF sf,PetscInt start,ISLocalToGlobalMapping *mapping) 164a4d96a55SJed Brown { 165a4d96a55SJed Brown PetscErrorCode ierr; 166a4d96a55SJed Brown PetscInt i,maxlocal,nroots,nleaves,*globals,*ltog; 167a4d96a55SJed Brown const PetscInt *ilocal; 168a4d96a55SJed Brown MPI_Comm comm; 169a4d96a55SJed Brown 170a4d96a55SJed Brown PetscFunctionBegin; 171a4d96a55SJed Brown PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 172a4d96a55SJed Brown PetscValidPointer(mapping,3); 173a4d96a55SJed Brown 174a4d96a55SJed Brown ierr = PetscObjectGetComm((PetscObject)sf,&comm);CHKERRQ(ierr); 1750298fd71SBarry Smith ierr = PetscSFGetGraph(sf,&nroots,&nleaves,&ilocal,NULL);CHKERRQ(ierr); 176f6e5521dSKarl Rupp if (ilocal) { 177f6e5521dSKarl Rupp for (i=0,maxlocal=0; i<nleaves; i++) maxlocal = PetscMax(maxlocal,ilocal[i]+1); 178f6e5521dSKarl Rupp } 179a4d96a55SJed Brown else maxlocal = nleaves; 180a4d96a55SJed Brown ierr = PetscMalloc(nroots*sizeof(PetscInt),&globals);CHKERRQ(ierr); 181a4d96a55SJed Brown ierr = PetscMalloc(maxlocal*sizeof(PetscInt),<og);CHKERRQ(ierr); 182a4d96a55SJed Brown for (i=0; i<nroots; i++) globals[i] = start + i; 183a4d96a55SJed Brown for (i=0; i<maxlocal; i++) ltog[i] = -1; 184a4d96a55SJed Brown ierr = PetscSFBcastBegin(sf,MPIU_INT,globals,ltog);CHKERRQ(ierr); 185a4d96a55SJed Brown ierr = PetscSFBcastEnd(sf,MPIU_INT,globals,ltog);CHKERRQ(ierr); 186a4d96a55SJed Brown ierr = ISLocalToGlobalMappingCreate(comm,maxlocal,ltog,PETSC_OWN_POINTER,mapping);CHKERRQ(ierr); 187a4d96a55SJed Brown ierr = PetscFree(globals);CHKERRQ(ierr); 188a4d96a55SJed Brown PetscFunctionReturn(0); 189a4d96a55SJed Brown } 190b46b645bSBarry Smith 1914a2ae208SSatish Balay #undef __FUNCT__ 1924a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingCreate" 193ba5bb76aSSatish Balay /*@ 19490f02eecSBarry Smith ISLocalToGlobalMappingCreate - Creates a mapping between a local (0 to n) 19590f02eecSBarry Smith ordering and a global parallel ordering. 1962362add9SBarry Smith 19789d82c54SBarry Smith Not Collective, but communicator may have more than one process 198b9cd556bSLois Curfman McInnes 1992362add9SBarry Smith Input Parameters: 20089d82c54SBarry Smith + comm - MPI communicator 20190f02eecSBarry Smith . n - the number of local elements 2029669e4d8SBarry Smith . indices - the global index for each local element, these do not need to be in increasing order (sorted) 203d5ad8652SBarry Smith - mode - see PetscCopyMode 2042362add9SBarry Smith 205a997ad1aSLois Curfman McInnes Output Parameter: 20690f02eecSBarry Smith . mapping - new mapping data structure 2072362add9SBarry Smith 208a997ad1aSLois Curfman McInnes Level: advanced 209a997ad1aSLois Curfman McInnes 210273d9f13SBarry Smith Concepts: mapping^local to global 2112362add9SBarry Smith 212d5ad8652SBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreateIS() 2132362add9SBarry Smith @*/ 2147087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingCreate(MPI_Comm cm,PetscInt n,const PetscInt indices[],PetscCopyMode mode,ISLocalToGlobalMapping *mapping) 2152362add9SBarry Smith { 2166849ba73SBarry Smith PetscErrorCode ierr; 21732dcc486SBarry Smith PetscInt *in; 218b46b645bSBarry Smith 219b46b645bSBarry Smith PetscFunctionBegin; 22073911063SBarry Smith if (n) PetscValidIntPointer(indices,3); 2214482741eSBarry Smith PetscValidPointer(mapping,4); 222b46b645bSBarry Smith 2230298fd71SBarry Smith *mapping = NULL; 224519f805aSKarl Rupp #if !defined(PETSC_USE_DYNAMIC_LIBRARIES) 225607a6623SBarry Smith ierr = ISInitializePackage();CHKERRQ(ierr); 2268e58c17dSMatthew Knepley #endif 2272362add9SBarry Smith 22867c2884eSBarry Smith ierr = PetscHeaderCreate(*mapping,_p_ISLocalToGlobalMapping,int,IS_LTOGM_CLASSID,"ISLocalToGlobalMapping","Local to global mapping","IS", 22952e6d16bSBarry Smith cm,ISLocalToGlobalMappingDestroy,ISLocalToGlobalMappingView);CHKERRQ(ierr); 230d4bb536fSBarry Smith (*mapping)->n = n; 231d4bb536fSBarry Smith /* 232d4bb536fSBarry Smith Do not create the global to local mapping. This is only created if 233d4bb536fSBarry Smith ISGlobalToLocalMapping() is called 234d4bb536fSBarry Smith */ 235d4bb536fSBarry Smith (*mapping)->globals = 0; 236d5ad8652SBarry Smith if (mode == PETSC_COPY_VALUES) { 237d5ad8652SBarry Smith ierr = PetscMalloc(n*sizeof(PetscInt),&in);CHKERRQ(ierr); 238d5ad8652SBarry Smith ierr = PetscMemcpy(in,indices,n*sizeof(PetscInt));CHKERRQ(ierr); 239d5ad8652SBarry Smith ierr = PetscLogObjectMemory(*mapping,n*sizeof(PetscInt));CHKERRQ(ierr); 240d5ad8652SBarry Smith (*mapping)->indices = in; 241f6e5521dSKarl Rupp } else if (mode == PETSC_OWN_POINTER) (*mapping)->indices = (PetscInt*)indices; 242f6e5521dSKarl Rupp else SETERRQ(cm,PETSC_ERR_SUP,"Cannot currently use PETSC_USE_POINTER"); 2433a40ed3dSBarry Smith PetscFunctionReturn(0); 2442362add9SBarry Smith } 2452362add9SBarry Smith 2464a2ae208SSatish Balay #undef __FUNCT__ 2474a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingBlock" 248bce096a4SSatish Balay /*@ 249323b833fSBarry Smith ISLocalToGlobalMappingBlock - Creates a blocked index version of an 250323b833fSBarry Smith ISLocalToGlobalMapping that is appropriate for MatSetLocalToGlobalMappingBlock() 251323b833fSBarry Smith and VecSetLocalToGlobalMappingBlock(). 252323b833fSBarry Smith 253323b833fSBarry Smith Not Collective, but communicator may have more than one process 254323b833fSBarry Smith 255323b833fSBarry Smith Input Parameters: 256323b833fSBarry Smith + inmap - original point-wise mapping 257323b833fSBarry Smith - bs - block size 258323b833fSBarry Smith 259323b833fSBarry Smith Output Parameter: 26069eb54c3SBarry Smith . outmap - block based mapping; the indices are relative to BLOCKS, not individual vector or matrix entries. 261323b833fSBarry Smith 262323b833fSBarry Smith Level: advanced 263323b833fSBarry Smith 264323b833fSBarry Smith Concepts: mapping^local to global 265323b833fSBarry Smith 266323b833fSBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreate(), ISLocalToGlobalMappingCreateIS() 267323b833fSBarry Smith @*/ 2687087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingBlock(ISLocalToGlobalMapping inmap,PetscInt bs,ISLocalToGlobalMapping *outmap) 269323b833fSBarry Smith { 2706849ba73SBarry Smith PetscErrorCode ierr; 27132dcc486SBarry Smith PetscInt *ii,i,n; 272323b833fSBarry Smith 273323b833fSBarry Smith PetscFunctionBegin; 2740700a824SBarry Smith PetscValidHeaderSpecific(inmap,IS_LTOGM_CLASSID,1); 275b2beed0aSJed Brown PetscValidPointer(outmap,3); 276323b833fSBarry Smith if (bs > 1) { 277323b833fSBarry Smith n = inmap->n/bs; 278e32f2f54SBarry Smith if (n*bs != inmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Pointwise mapping length is not divisible by block size"); 27932dcc486SBarry Smith ierr = PetscMalloc(n*sizeof(PetscInt),&ii);CHKERRQ(ierr); 280f6e5521dSKarl Rupp for (i=0; i<n; i++) ii[i] = inmap->indices[bs*i]/bs; 281ce94432eSBarry Smith ierr = ISLocalToGlobalMappingCreate(PetscObjectComm((PetscObject)inmap),n,ii,PETSC_OWN_POINTER,outmap);CHKERRQ(ierr); 282323b833fSBarry Smith } else { 283323b833fSBarry Smith ierr = PetscObjectReference((PetscObject)inmap);CHKERRQ(ierr); 284c3122656SLisandro Dalcin *outmap = inmap; 285323b833fSBarry Smith } 286323b833fSBarry Smith PetscFunctionReturn(0); 287323b833fSBarry Smith } 288323b833fSBarry Smith 2894a2ae208SSatish Balay #undef __FUNCT__ 2908ab951edSJed Brown #define __FUNCT__ "ISLocalToGlobalMappingUnBlock" 291b2beed0aSJed Brown /*@ 292b2beed0aSJed Brown ISLocalToGlobalMappingUnBlock - Creates a scalar index version of a blocked 293b2beed0aSJed Brown ISLocalToGlobalMapping 294b2beed0aSJed Brown 295b2beed0aSJed Brown Not Collective, but communicator may have more than one process 296b2beed0aSJed Brown 297b2beed0aSJed Brown Input Parameter: 298b2beed0aSJed Brown + inmap - block based mapping; the indices are relative to BLOCKS, not individual vector or matrix entries. 299b2beed0aSJed Brown - bs - block size 300b2beed0aSJed Brown 301b2beed0aSJed Brown Output Parameter: 302b2beed0aSJed Brown . outmap - pointwise mapping 303b2beed0aSJed Brown 304b2beed0aSJed Brown Level: advanced 305b2beed0aSJed Brown 306b2beed0aSJed Brown Concepts: mapping^local to global 307b2beed0aSJed Brown 308b2beed0aSJed Brown .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreate(), ISLocalToGlobalMappingBlock() 309b2beed0aSJed Brown @*/ 3107087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingUnBlock(ISLocalToGlobalMapping inmap,PetscInt bs,ISLocalToGlobalMapping *outmap) 311b2beed0aSJed Brown { 312b2beed0aSJed Brown PetscErrorCode ierr; 313b2beed0aSJed Brown PetscInt *ii,i,n; 314b2beed0aSJed Brown 315b2beed0aSJed Brown PetscFunctionBegin; 316b2beed0aSJed Brown PetscValidHeaderSpecific(inmap,IS_LTOGM_CLASSID,1); 317b2beed0aSJed Brown PetscValidPointer(outmap,2); 318b2beed0aSJed Brown if (bs > 1) { 319b2beed0aSJed Brown n = inmap->n*bs; 320b2beed0aSJed Brown ierr = PetscMalloc(n*sizeof(PetscInt),&ii);CHKERRQ(ierr); 321f6e5521dSKarl Rupp for (i=0; i<n; i++) ii[i] = inmap->indices[i/bs]*bs + (i%bs); 322ce94432eSBarry Smith ierr = ISLocalToGlobalMappingCreate(PetscObjectComm((PetscObject)inmap),n,ii,PETSC_OWN_POINTER,outmap);CHKERRQ(ierr); 323b2beed0aSJed Brown } else { 324b2beed0aSJed Brown ierr = PetscObjectReference((PetscObject)inmap);CHKERRQ(ierr); 325b2beed0aSJed Brown *outmap = inmap; 326b2beed0aSJed Brown } 327b2beed0aSJed Brown PetscFunctionReturn(0); 328b2beed0aSJed Brown } 329b2beed0aSJed Brown 330b2beed0aSJed Brown #undef __FUNCT__ 3314a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingDestroy" 33290f02eecSBarry Smith /*@ 33390f02eecSBarry Smith ISLocalToGlobalMappingDestroy - Destroys a mapping between a local (0 to n) 33490f02eecSBarry Smith ordering and a global parallel ordering. 33590f02eecSBarry Smith 3360f5bd95cSBarry Smith Note Collective 337b9cd556bSLois Curfman McInnes 33890f02eecSBarry Smith Input Parameters: 33990f02eecSBarry Smith . mapping - mapping data structure 34090f02eecSBarry Smith 341a997ad1aSLois Curfman McInnes Level: advanced 342a997ad1aSLois Curfman McInnes 3433acfe500SLois Curfman McInnes .seealso: ISLocalToGlobalMappingCreate() 34490f02eecSBarry Smith @*/ 3456bf464f9SBarry Smith PetscErrorCode ISLocalToGlobalMappingDestroy(ISLocalToGlobalMapping *mapping) 34690f02eecSBarry Smith { 347dfbe8321SBarry Smith PetscErrorCode ierr; 3485fd66863SKarl Rupp 3493a40ed3dSBarry Smith PetscFunctionBegin; 3506bf464f9SBarry Smith if (!*mapping) PetscFunctionReturn(0); 3516bf464f9SBarry Smith PetscValidHeaderSpecific((*mapping),IS_LTOGM_CLASSID,1); 352997056adSBarry Smith if (--((PetscObject)(*mapping))->refct > 0) {*mapping = 0;PetscFunctionReturn(0);} 3536bf464f9SBarry Smith ierr = PetscFree((*mapping)->indices);CHKERRQ(ierr); 3546bf464f9SBarry Smith ierr = PetscFree((*mapping)->globals);CHKERRQ(ierr); 355d38fa0fbSBarry Smith ierr = PetscHeaderDestroy(mapping);CHKERRQ(ierr); 356992144d0SBarry Smith *mapping = 0; 3573a40ed3dSBarry Smith PetscFunctionReturn(0); 35890f02eecSBarry Smith } 35990f02eecSBarry Smith 3604a2ae208SSatish Balay #undef __FUNCT__ 3614a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingApplyIS" 36290f02eecSBarry Smith /*@ 3633acfe500SLois Curfman McInnes ISLocalToGlobalMappingApplyIS - Creates from an IS in the local numbering 3643acfe500SLois Curfman McInnes a new index set using the global numbering defined in an ISLocalToGlobalMapping 3653acfe500SLois Curfman McInnes context. 36690f02eecSBarry Smith 367b9cd556bSLois Curfman McInnes Not collective 368b9cd556bSLois Curfman McInnes 36990f02eecSBarry Smith Input Parameters: 370b9cd556bSLois Curfman McInnes + mapping - mapping between local and global numbering 371b9cd556bSLois Curfman McInnes - is - index set in local numbering 37290f02eecSBarry Smith 37390f02eecSBarry Smith Output Parameters: 37490f02eecSBarry Smith . newis - index set in global numbering 37590f02eecSBarry Smith 376a997ad1aSLois Curfman McInnes Level: advanced 377a997ad1aSLois Curfman McInnes 378273d9f13SBarry Smith Concepts: mapping^local to global 3793acfe500SLois Curfman McInnes 38090f02eecSBarry Smith .seealso: ISLocalToGlobalMappingApply(), ISLocalToGlobalMappingCreate(), 381d4bb536fSBarry Smith ISLocalToGlobalMappingDestroy(), ISGlobalToLocalMappingApply() 38290f02eecSBarry Smith @*/ 3837087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingApplyIS(ISLocalToGlobalMapping mapping,IS is,IS *newis) 38490f02eecSBarry Smith { 3856849ba73SBarry Smith PetscErrorCode ierr; 3865d0c19d7SBarry Smith PetscInt n,i,*idxmap,*idxout,Nmax = mapping->n; 3875d0c19d7SBarry Smith const PetscInt *idxin; 3883a40ed3dSBarry Smith 3893a40ed3dSBarry Smith PetscFunctionBegin; 3900700a824SBarry Smith PetscValidHeaderSpecific(mapping,IS_LTOGM_CLASSID,1); 3910700a824SBarry Smith PetscValidHeaderSpecific(is,IS_CLASSID,2); 3924482741eSBarry Smith PetscValidPointer(newis,3); 39390f02eecSBarry Smith 3943b9aefa3SBarry Smith ierr = ISGetLocalSize(is,&n);CHKERRQ(ierr); 39590f02eecSBarry Smith ierr = ISGetIndices(is,&idxin);CHKERRQ(ierr); 39690f02eecSBarry Smith idxmap = mapping->indices; 39790f02eecSBarry Smith 3987c334f02SBarry Smith ierr = PetscMalloc(n*sizeof(PetscInt),&idxout);CHKERRQ(ierr); 39990f02eecSBarry Smith for (i=0; i<n; i++) { 400e32f2f54SBarry Smith if (idxin[i] >= Nmax) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local index %d too large %d (max) at %d",idxin[i],Nmax-1,i); 40190f02eecSBarry Smith idxout[i] = idxmap[idxin[i]]; 40290f02eecSBarry Smith } 4033b9aefa3SBarry Smith ierr = ISRestoreIndices(is,&idxin);CHKERRQ(ierr); 40470b3c8c7SBarry Smith ierr = ISCreateGeneral(PETSC_COMM_SELF,n,idxout,PETSC_OWN_POINTER,newis);CHKERRQ(ierr); 4053a40ed3dSBarry Smith PetscFunctionReturn(0); 40690f02eecSBarry Smith } 40790f02eecSBarry Smith 408afcb2eb5SJed Brown #undef __FUNCT__ 409afcb2eb5SJed Brown #define __FUNCT__ "ISLocalToGlobalMappingApply" 410b89cb25eSSatish Balay /*@ 4113acfe500SLois Curfman McInnes ISLocalToGlobalMappingApply - Takes a list of integers in a local numbering 4123acfe500SLois Curfman McInnes and converts them to the global numbering. 41390f02eecSBarry Smith 414b9cd556bSLois Curfman McInnes Not collective 415b9cd556bSLois Curfman McInnes 416bb25748dSBarry Smith Input Parameters: 417b9cd556bSLois Curfman McInnes + mapping - the local to global mapping context 418bb25748dSBarry Smith . N - number of integers 419b9cd556bSLois Curfman McInnes - in - input indices in local numbering 420bb25748dSBarry Smith 421bb25748dSBarry Smith Output Parameter: 422bb25748dSBarry Smith . out - indices in global numbering 423bb25748dSBarry Smith 424b9cd556bSLois Curfman McInnes Notes: 425b9cd556bSLois Curfman McInnes The in and out array parameters may be identical. 426d4bb536fSBarry Smith 427a997ad1aSLois Curfman McInnes Level: advanced 428a997ad1aSLois Curfman McInnes 429bb25748dSBarry Smith .seealso: ISLocalToGlobalMappingCreate(),ISLocalToGlobalMappingDestroy(), 4300752156aSBarry Smith ISLocalToGlobalMappingApplyIS(),AOCreateBasic(),AOApplicationToPetsc(), 431d4bb536fSBarry Smith AOPetscToApplication(), ISGlobalToLocalMappingApply() 432bb25748dSBarry Smith 433273d9f13SBarry Smith Concepts: mapping^local to global 434afcb2eb5SJed Brown @*/ 435afcb2eb5SJed Brown PetscErrorCode ISLocalToGlobalMappingApply(ISLocalToGlobalMapping mapping,PetscInt N,const PetscInt in[],PetscInt out[]) 436afcb2eb5SJed Brown { 437afcb2eb5SJed Brown PetscInt i,Nmax = mapping->n; 438afcb2eb5SJed Brown const PetscInt *idx = mapping->indices; 439d4bb536fSBarry Smith 440afcb2eb5SJed Brown PetscFunctionBegin; 441afcb2eb5SJed Brown for (i=0; i<N; i++) { 442afcb2eb5SJed Brown if (in[i] < 0) { 443afcb2eb5SJed Brown out[i] = in[i]; 444afcb2eb5SJed Brown continue; 445afcb2eb5SJed Brown } 446afcb2eb5SJed Brown if (in[i] >= Nmax) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local index %D too large %D (max) at %D",in[i],Nmax,i); 447afcb2eb5SJed Brown out[i] = idx[in[i]]; 448afcb2eb5SJed Brown } 449afcb2eb5SJed Brown PetscFunctionReturn(0); 450afcb2eb5SJed Brown } 451d4bb536fSBarry Smith 452d4bb536fSBarry Smith /* -----------------------------------------------------------------------------------------*/ 453d4bb536fSBarry Smith 4544a2ae208SSatish Balay #undef __FUNCT__ 4554a2ae208SSatish Balay #define __FUNCT__ "ISGlobalToLocalMappingSetUp_Private" 456d4bb536fSBarry Smith /* 457d4bb536fSBarry Smith Creates the global fields in the ISLocalToGlobalMapping structure 458d4bb536fSBarry Smith */ 4596849ba73SBarry Smith static PetscErrorCode ISGlobalToLocalMappingSetUp_Private(ISLocalToGlobalMapping mapping) 460d4bb536fSBarry Smith { 4616849ba73SBarry Smith PetscErrorCode ierr; 46232dcc486SBarry Smith PetscInt i,*idx = mapping->indices,n = mapping->n,end,start,*globals; 463d4bb536fSBarry Smith 4643a40ed3dSBarry Smith PetscFunctionBegin; 465d4bb536fSBarry Smith end = 0; 466ec268f7cSJed Brown start = PETSC_MAX_INT; 467d4bb536fSBarry Smith 468d4bb536fSBarry Smith for (i=0; i<n; i++) { 469d4bb536fSBarry Smith if (idx[i] < 0) continue; 470d4bb536fSBarry Smith if (idx[i] < start) start = idx[i]; 471d4bb536fSBarry Smith if (idx[i] > end) end = idx[i]; 472d4bb536fSBarry Smith } 473d4bb536fSBarry Smith if (start > end) {start = 0; end = -1;} 474d4bb536fSBarry Smith mapping->globalstart = start; 475d4bb536fSBarry Smith mapping->globalend = end; 476d4bb536fSBarry Smith 47732dcc486SBarry Smith ierr = PetscMalloc((end-start+2)*sizeof(PetscInt),&globals);CHKERRQ(ierr); 478b0a32e0cSBarry Smith mapping->globals = globals; 479f6e5521dSKarl Rupp for (i=0; i<end-start+1; i++) globals[i] = -1; 480d4bb536fSBarry Smith for (i=0; i<n; i++) { 481d4bb536fSBarry Smith if (idx[i] < 0) continue; 482d4bb536fSBarry Smith globals[idx[i] - start] = i; 483d4bb536fSBarry Smith } 484d4bb536fSBarry Smith 48552e6d16bSBarry Smith ierr = PetscLogObjectMemory(mapping,(end-start+1)*sizeof(PetscInt));CHKERRQ(ierr); 4863a40ed3dSBarry Smith PetscFunctionReturn(0); 487d4bb536fSBarry Smith } 488d4bb536fSBarry Smith 4894a2ae208SSatish Balay #undef __FUNCT__ 4904a2ae208SSatish Balay #define __FUNCT__ "ISGlobalToLocalMappingApply" 491d4bb536fSBarry Smith /*@ 492a997ad1aSLois Curfman McInnes ISGlobalToLocalMappingApply - Provides the local numbering for a list of integers 493a997ad1aSLois Curfman McInnes specified with a global numbering. 494d4bb536fSBarry Smith 495b9cd556bSLois Curfman McInnes Not collective 496b9cd556bSLois Curfman McInnes 497d4bb536fSBarry Smith Input Parameters: 498b9cd556bSLois Curfman McInnes + mapping - mapping between local and global numbering 499d4bb536fSBarry Smith . type - IS_GTOLM_MASK - replaces global indices with no local value with -1 500d4bb536fSBarry Smith IS_GTOLM_DROP - drops the indices with no local value from the output list 501d4bb536fSBarry Smith . n - number of global indices to map 502b9cd556bSLois Curfman McInnes - idx - global indices to map 503d4bb536fSBarry Smith 504d4bb536fSBarry Smith Output Parameters: 505b9cd556bSLois Curfman McInnes + nout - number of indices in output array (if type == IS_GTOLM_MASK then nout = n) 506b9cd556bSLois Curfman McInnes - idxout - local index of each global index, one must pass in an array long enough 507e182c471SBarry Smith to hold all the indices. You can call ISGlobalToLocalMappingApply() with 5080298fd71SBarry Smith idxout == NULL to determine the required length (returned in nout) 509e182c471SBarry Smith and then allocate the required space and call ISGlobalToLocalMappingApply() 510e182c471SBarry Smith a second time to set the values. 511d4bb536fSBarry Smith 512b9cd556bSLois Curfman McInnes Notes: 5130298fd71SBarry Smith Either nout or idxout may be NULL. idx and idxout may be identical. 514d4bb536fSBarry Smith 5150f5bd95cSBarry Smith This is not scalable in memory usage. Each processor requires O(Nglobal) size 5160f5bd95cSBarry Smith array to compute these. 5170f5bd95cSBarry Smith 518a997ad1aSLois Curfman McInnes Level: advanced 519a997ad1aSLois Curfman McInnes 52032fd6b96SBarry Smith Developer Note: The manual page states that idx and idxout may be identical but the calling 52132fd6b96SBarry Smith sequence declares idx as const so it cannot be the same as idxout. 52232fd6b96SBarry Smith 523273d9f13SBarry Smith Concepts: mapping^global to local 524d4bb536fSBarry Smith 525d4bb536fSBarry Smith .seealso: ISLocalToGlobalMappingApply(), ISLocalToGlobalMappingCreate(), 526d4bb536fSBarry Smith ISLocalToGlobalMappingDestroy() 527d4bb536fSBarry Smith @*/ 5287087cfbeSBarry Smith PetscErrorCode ISGlobalToLocalMappingApply(ISLocalToGlobalMapping mapping,ISGlobalToLocalMappingType type, 52932dcc486SBarry Smith PetscInt n,const PetscInt idx[],PetscInt *nout,PetscInt idxout[]) 530d4bb536fSBarry Smith { 53132dcc486SBarry Smith PetscInt i,*globals,nf = 0,tmp,start,end; 5326849ba73SBarry Smith PetscErrorCode ierr; 533d4bb536fSBarry Smith 5343a40ed3dSBarry Smith PetscFunctionBegin; 5350700a824SBarry Smith PetscValidHeaderSpecific(mapping,IS_LTOGM_CLASSID,1); 536d4bb536fSBarry Smith if (!mapping->globals) { 537d4bb536fSBarry Smith ierr = ISGlobalToLocalMappingSetUp_Private(mapping);CHKERRQ(ierr); 538d4bb536fSBarry Smith } 539d4bb536fSBarry Smith globals = mapping->globals; 540d4bb536fSBarry Smith start = mapping->globalstart; 541d4bb536fSBarry Smith end = mapping->globalend; 542d4bb536fSBarry Smith 543d4bb536fSBarry Smith if (type == IS_GTOLM_MASK) { 544d4bb536fSBarry Smith if (idxout) { 545d4bb536fSBarry Smith for (i=0; i<n; i++) { 546d4bb536fSBarry Smith if (idx[i] < 0) idxout[i] = idx[i]; 547d4bb536fSBarry Smith else if (idx[i] < start) idxout[i] = -1; 548d4bb536fSBarry Smith else if (idx[i] > end) idxout[i] = -1; 549d4bb536fSBarry Smith else idxout[i] = globals[idx[i] - start]; 550d4bb536fSBarry Smith } 551d4bb536fSBarry Smith } 552d4bb536fSBarry Smith if (nout) *nout = n; 553d4bb536fSBarry Smith } else { 554d4bb536fSBarry Smith if (idxout) { 555d4bb536fSBarry Smith for (i=0; i<n; i++) { 556d4bb536fSBarry Smith if (idx[i] < 0) continue; 557d4bb536fSBarry Smith if (idx[i] < start) continue; 558d4bb536fSBarry Smith if (idx[i] > end) continue; 559d4bb536fSBarry Smith tmp = globals[idx[i] - start]; 560d4bb536fSBarry Smith if (tmp < 0) continue; 561d4bb536fSBarry Smith idxout[nf++] = tmp; 562d4bb536fSBarry Smith } 563d4bb536fSBarry Smith } else { 564d4bb536fSBarry Smith for (i=0; i<n; i++) { 565d4bb536fSBarry Smith if (idx[i] < 0) continue; 566d4bb536fSBarry Smith if (idx[i] < start) continue; 567d4bb536fSBarry Smith if (idx[i] > end) continue; 568d4bb536fSBarry Smith tmp = globals[idx[i] - start]; 569d4bb536fSBarry Smith if (tmp < 0) continue; 570d4bb536fSBarry Smith nf++; 571d4bb536fSBarry Smith } 572d4bb536fSBarry Smith } 573d4bb536fSBarry Smith if (nout) *nout = nf; 574d4bb536fSBarry Smith } 5753a40ed3dSBarry Smith PetscFunctionReturn(0); 576d4bb536fSBarry Smith } 57790f02eecSBarry Smith 5784a2ae208SSatish Balay #undef __FUNCT__ 5794a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingGetInfo" 58089d82c54SBarry Smith /*@C 58189d82c54SBarry Smith ISLocalToGlobalMappingGetInfo - Gets the neighbor information for each processor and 58289d82c54SBarry Smith each index shared by more than one processor 58389d82c54SBarry Smith 58489d82c54SBarry Smith Collective on ISLocalToGlobalMapping 58589d82c54SBarry Smith 58689d82c54SBarry Smith Input Parameters: 58789d82c54SBarry Smith . mapping - the mapping from local to global indexing 58889d82c54SBarry Smith 58989d82c54SBarry Smith Output Parameter: 59089d82c54SBarry Smith + nproc - number of processors that are connected to this one 59189d82c54SBarry Smith . proc - neighboring processors 59207b52d57SBarry Smith . numproc - number of indices for each subdomain (processor) 5933463a7baSJed Brown - indices - indices of nodes (in local numbering) shared with neighbors (sorted by global numbering) 59489d82c54SBarry Smith 59589d82c54SBarry Smith Level: advanced 59689d82c54SBarry Smith 597273d9f13SBarry Smith Concepts: mapping^local to global 59889d82c54SBarry Smith 5992cfcea29SBarry Smith Fortran Usage: 6002cfcea29SBarry Smith $ ISLocalToGlobalMpngGetInfoSize(ISLocalToGlobalMapping,PetscInt nproc,PetscInt numprocmax,ierr) followed by 6012cfcea29SBarry Smith $ ISLocalToGlobalMappingGetInfo(ISLocalToGlobalMapping,PetscInt nproc, PetscInt procs[nproc],PetscInt numprocs[nproc], 6022cfcea29SBarry Smith PetscInt indices[nproc][numprocmax],ierr) 6032cfcea29SBarry Smith There is no ISLocalToGlobalMappingRestoreInfo() in Fortran. You must make sure that procs[], numprocs[] and 6042cfcea29SBarry Smith indices[][] are large enough arrays, either by allocating them dynamically or defining static ones large enough. 6052cfcea29SBarry Smith 6062cfcea29SBarry Smith 60707b52d57SBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreateIS(), ISLocalToGlobalMappingCreate(), 60807b52d57SBarry Smith ISLocalToGlobalMappingRestoreInfo() 60989d82c54SBarry Smith @*/ 6107087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingGetInfo(ISLocalToGlobalMapping mapping,PetscInt *nproc,PetscInt *procs[],PetscInt *numprocs[],PetscInt **indices[]) 61189d82c54SBarry Smith { 6126849ba73SBarry Smith PetscErrorCode ierr; 61397f1f81fSBarry Smith PetscMPIInt size,rank,tag1,tag2,tag3,*len,*source,imdex; 61432dcc486SBarry Smith PetscInt i,n = mapping->n,Ng,ng,max = 0,*lindices = mapping->indices; 61532dcc486SBarry Smith PetscInt *nprocs,*owner,nsends,*sends,j,*starts,nmax,nrecvs,*recvs,proc; 61697f1f81fSBarry Smith PetscInt cnt,scale,*ownedsenders,*nownedsenders,rstart,nowned; 61732dcc486SBarry Smith PetscInt node,nownedm,nt,*sends2,nsends2,*starts2,*lens2,*dest,nrecvs2,*starts3,*recvs2,k,*bprocs,*tmp; 61832dcc486SBarry Smith PetscInt first_procs,first_numprocs,*first_indices; 61989d82c54SBarry Smith MPI_Request *recv_waits,*send_waits; 62030dcb7c9SBarry Smith MPI_Status recv_status,*send_status,*recv_statuses; 621ce94432eSBarry Smith MPI_Comm comm; 622ace3abfcSBarry Smith PetscBool debug = PETSC_FALSE; 62389d82c54SBarry Smith 62489d82c54SBarry Smith PetscFunctionBegin; 6250700a824SBarry Smith PetscValidHeaderSpecific(mapping,IS_LTOGM_CLASSID,1); 626ce94432eSBarry Smith ierr = PetscObjectGetComm((PetscObject)mapping,&comm);CHKERRQ(ierr); 62724cf384cSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 62824cf384cSBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 62924cf384cSBarry Smith if (size == 1) { 63024cf384cSBarry Smith *nproc = 0; 6310298fd71SBarry Smith *procs = NULL; 63232dcc486SBarry Smith ierr = PetscMalloc(sizeof(PetscInt),numprocs);CHKERRQ(ierr); 6331e2105dcSBarry Smith (*numprocs)[0] = 0; 63432dcc486SBarry Smith ierr = PetscMalloc(sizeof(PetscInt*),indices);CHKERRQ(ierr); 6350298fd71SBarry Smith (*indices)[0] = NULL; 63624cf384cSBarry Smith PetscFunctionReturn(0); 63724cf384cSBarry Smith } 63824cf384cSBarry Smith 6390298fd71SBarry Smith ierr = PetscOptionsGetBool(NULL,"-islocaltoglobalmappinggetinfo_debug",&debug,NULL);CHKERRQ(ierr); 64007b52d57SBarry Smith 6413677ff5aSBarry Smith /* 6423677ff5aSBarry Smith Notes on ISLocalToGlobalMappingGetInfo 6433677ff5aSBarry Smith 6443677ff5aSBarry Smith globally owned node - the nodes that have been assigned to this processor in global 6453677ff5aSBarry Smith numbering, just for this routine. 6463677ff5aSBarry Smith 6473677ff5aSBarry Smith nontrivial globally owned node - node assigned to this processor that is on a subdomain 6483677ff5aSBarry Smith boundary (i.e. is has more than one local owner) 6493677ff5aSBarry Smith 6503677ff5aSBarry Smith locally owned node - node that exists on this processors subdomain 6513677ff5aSBarry Smith 6523677ff5aSBarry Smith nontrivial locally owned node - node that is not in the interior (i.e. has more than one 6533677ff5aSBarry Smith local subdomain 6543677ff5aSBarry Smith */ 65524cf384cSBarry Smith ierr = PetscObjectGetNewTag((PetscObject)mapping,&tag1);CHKERRQ(ierr); 65624cf384cSBarry Smith ierr = PetscObjectGetNewTag((PetscObject)mapping,&tag2);CHKERRQ(ierr); 65724cf384cSBarry Smith ierr = PetscObjectGetNewTag((PetscObject)mapping,&tag3);CHKERRQ(ierr); 65889d82c54SBarry Smith 65989d82c54SBarry Smith for (i=0; i<n; i++) { 66089d82c54SBarry Smith if (lindices[i] > max) max = lindices[i]; 66189d82c54SBarry Smith } 66232dcc486SBarry Smith ierr = MPI_Allreduce(&max,&Ng,1,MPIU_INT,MPI_MAX,comm);CHKERRQ(ierr); 66378058e43SBarry Smith Ng++; 66489d82c54SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 66589d82c54SBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 666bc8ff85bSBarry Smith scale = Ng/size + 1; 667a2e34c3dSBarry Smith ng = scale; if (rank == size-1) ng = Ng - scale*(size-1); ng = PetscMax(1,ng); 668caba0dd0SBarry Smith rstart = scale*rank; 66989d82c54SBarry Smith 67089d82c54SBarry Smith /* determine ownership ranges of global indices */ 6717c334f02SBarry Smith ierr = PetscMalloc(2*size*sizeof(PetscInt),&nprocs);CHKERRQ(ierr); 67232dcc486SBarry Smith ierr = PetscMemzero(nprocs,2*size*sizeof(PetscInt));CHKERRQ(ierr); 67389d82c54SBarry Smith 67489d82c54SBarry Smith /* determine owners of each local node */ 6757c334f02SBarry Smith ierr = PetscMalloc(n*sizeof(PetscInt),&owner);CHKERRQ(ierr); 67689d82c54SBarry Smith for (i=0; i<n; i++) { 6773677ff5aSBarry Smith proc = lindices[i]/scale; /* processor that globally owns this index */ 67827c402fcSBarry Smith nprocs[2*proc+1] = 1; /* processor globally owns at least one of ours */ 6793677ff5aSBarry Smith owner[i] = proc; 68027c402fcSBarry Smith nprocs[2*proc]++; /* count of how many that processor globally owns of ours */ 68189d82c54SBarry Smith } 68227c402fcSBarry Smith nsends = 0; for (i=0; i<size; i++) nsends += nprocs[2*i+1]; 6831e2582c4SBarry Smith ierr = PetscInfo1(mapping,"Number of global owners for my local data %d\n",nsends);CHKERRQ(ierr); 68489d82c54SBarry Smith 68589d82c54SBarry Smith /* inform other processors of number of messages and max length*/ 68627c402fcSBarry Smith ierr = PetscMaxSum(comm,nprocs,&nmax,&nrecvs);CHKERRQ(ierr); 6871e2582c4SBarry Smith ierr = PetscInfo1(mapping,"Number of local owners for my global data %d\n",nrecvs);CHKERRQ(ierr); 68889d82c54SBarry Smith 68989d82c54SBarry Smith /* post receives for owned rows */ 69032dcc486SBarry Smith ierr = PetscMalloc((2*nrecvs+1)*(nmax+1)*sizeof(PetscInt),&recvs);CHKERRQ(ierr); 691b0a32e0cSBarry Smith ierr = PetscMalloc((nrecvs+1)*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr); 69289d82c54SBarry Smith for (i=0; i<nrecvs; i++) { 69332dcc486SBarry Smith ierr = MPI_Irecv(recvs+2*nmax*i,2*nmax,MPIU_INT,MPI_ANY_SOURCE,tag1,comm,recv_waits+i);CHKERRQ(ierr); 69489d82c54SBarry Smith } 69589d82c54SBarry Smith 69689d82c54SBarry Smith /* pack messages containing lists of local nodes to owners */ 69732dcc486SBarry Smith ierr = PetscMalloc((2*n+1)*sizeof(PetscInt),&sends);CHKERRQ(ierr); 69832dcc486SBarry Smith ierr = PetscMalloc((size+1)*sizeof(PetscInt),&starts);CHKERRQ(ierr); 69989d82c54SBarry Smith starts[0] = 0; 700f6e5521dSKarl Rupp for (i=1; i<size; i++) starts[i] = starts[i-1] + 2*nprocs[2*i-2]; 70189d82c54SBarry Smith for (i=0; i<n; i++) { 70289d82c54SBarry Smith sends[starts[owner[i]]++] = lindices[i]; 70330dcb7c9SBarry Smith sends[starts[owner[i]]++] = i; 70489d82c54SBarry Smith } 70589d82c54SBarry Smith ierr = PetscFree(owner);CHKERRQ(ierr); 70689d82c54SBarry Smith starts[0] = 0; 707f6e5521dSKarl Rupp for (i=1; i<size; i++) starts[i] = starts[i-1] + 2*nprocs[2*i-2]; 70889d82c54SBarry Smith 70989d82c54SBarry Smith /* send the messages */ 710b0a32e0cSBarry Smith ierr = PetscMalloc((nsends+1)*sizeof(MPI_Request),&send_waits);CHKERRQ(ierr); 71132dcc486SBarry Smith ierr = PetscMalloc((nsends+1)*sizeof(PetscInt),&dest);CHKERRQ(ierr); 71289d82c54SBarry Smith cnt = 0; 71389d82c54SBarry Smith for (i=0; i<size; i++) { 71427c402fcSBarry Smith if (nprocs[2*i]) { 71532dcc486SBarry Smith ierr = MPI_Isend(sends+starts[i],2*nprocs[2*i],MPIU_INT,i,tag1,comm,send_waits+cnt);CHKERRQ(ierr); 71630dcb7c9SBarry Smith dest[cnt] = i; 71789d82c54SBarry Smith cnt++; 71889d82c54SBarry Smith } 71989d82c54SBarry Smith } 72089d82c54SBarry Smith ierr = PetscFree(starts);CHKERRQ(ierr); 72189d82c54SBarry Smith 72289d82c54SBarry Smith /* wait on receives */ 72397f1f81fSBarry Smith ierr = PetscMalloc((nrecvs+1)*sizeof(PetscMPIInt),&source);CHKERRQ(ierr); 72497f1f81fSBarry Smith ierr = PetscMalloc((nrecvs+1)*sizeof(PetscMPIInt),&len);CHKERRQ(ierr); 72589d82c54SBarry Smith cnt = nrecvs; 72632dcc486SBarry Smith ierr = PetscMalloc((ng+1)*sizeof(PetscInt),&nownedsenders);CHKERRQ(ierr); 72732dcc486SBarry Smith ierr = PetscMemzero(nownedsenders,ng*sizeof(PetscInt));CHKERRQ(ierr); 72889d82c54SBarry Smith while (cnt) { 72989d82c54SBarry Smith ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr); 73089d82c54SBarry Smith /* unpack receives into our local space */ 73132dcc486SBarry Smith ierr = MPI_Get_count(&recv_status,MPIU_INT,&len[imdex]);CHKERRQ(ierr); 73289d82c54SBarry Smith source[imdex] = recv_status.MPI_SOURCE; 73330dcb7c9SBarry Smith len[imdex] = len[imdex]/2; 734caba0dd0SBarry Smith /* count how many local owners for each of my global owned indices */ 73530dcb7c9SBarry Smith for (i=0; i<len[imdex]; i++) nownedsenders[recvs[2*imdex*nmax+2*i]-rstart]++; 73689d82c54SBarry Smith cnt--; 73789d82c54SBarry Smith } 73889d82c54SBarry Smith ierr = PetscFree(recv_waits);CHKERRQ(ierr); 73989d82c54SBarry Smith 74030dcb7c9SBarry Smith /* count how many globally owned indices are on an edge multiplied by how many processors own them. */ 741bc8ff85bSBarry Smith nowned = 0; 742bc8ff85bSBarry Smith nownedm = 0; 743bc8ff85bSBarry Smith for (i=0; i<ng; i++) { 744bc8ff85bSBarry Smith if (nownedsenders[i] > 1) {nownedm += nownedsenders[i]; nowned++;} 745bc8ff85bSBarry Smith } 746bc8ff85bSBarry Smith 747bc8ff85bSBarry Smith /* create single array to contain rank of all local owners of each globally owned index */ 74832dcc486SBarry Smith ierr = PetscMalloc((nownedm+1)*sizeof(PetscInt),&ownedsenders);CHKERRQ(ierr); 74932dcc486SBarry Smith ierr = PetscMalloc((ng+1)*sizeof(PetscInt),&starts);CHKERRQ(ierr); 750bc8ff85bSBarry Smith starts[0] = 0; 751bc8ff85bSBarry Smith for (i=1; i<ng; i++) { 752bc8ff85bSBarry Smith if (nownedsenders[i-1] > 1) starts[i] = starts[i-1] + nownedsenders[i-1]; 753bc8ff85bSBarry Smith else starts[i] = starts[i-1]; 754bc8ff85bSBarry Smith } 755bc8ff85bSBarry Smith 75630dcb7c9SBarry Smith /* for each nontrival globally owned node list all arriving processors */ 757bc8ff85bSBarry Smith for (i=0; i<nrecvs; i++) { 758bc8ff85bSBarry Smith for (j=0; j<len[i]; j++) { 75930dcb7c9SBarry Smith node = recvs[2*i*nmax+2*j]-rstart; 760f6e5521dSKarl Rupp if (nownedsenders[node] > 1) ownedsenders[starts[node]++] = source[i]; 761bc8ff85bSBarry Smith } 762bc8ff85bSBarry Smith } 763bc8ff85bSBarry Smith 76407b52d57SBarry Smith if (debug) { /* ----------------------------------- */ 76530dcb7c9SBarry Smith starts[0] = 0; 76630dcb7c9SBarry Smith for (i=1; i<ng; i++) { 76730dcb7c9SBarry Smith if (nownedsenders[i-1] > 1) starts[i] = starts[i-1] + nownedsenders[i-1]; 76830dcb7c9SBarry Smith else starts[i] = starts[i-1]; 76930dcb7c9SBarry Smith } 77030dcb7c9SBarry Smith for (i=0; i<ng; i++) { 77130dcb7c9SBarry Smith if (nownedsenders[i] > 1) { 77230dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"[%d] global node %d local owner processors: ",rank,i+rstart);CHKERRQ(ierr); 77330dcb7c9SBarry Smith for (j=0; j<nownedsenders[i]; j++) { 77430dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"%d ",ownedsenders[starts[i]+j]);CHKERRQ(ierr); 77530dcb7c9SBarry Smith } 77630dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"\n");CHKERRQ(ierr); 77730dcb7c9SBarry Smith } 77830dcb7c9SBarry Smith } 77930dcb7c9SBarry Smith ierr = PetscSynchronizedFlush(comm);CHKERRQ(ierr); 78007b52d57SBarry Smith } /* ----------------------------------- */ 78130dcb7c9SBarry Smith 7823677ff5aSBarry Smith /* wait on original sends */ 7833a96401aSBarry Smith if (nsends) { 784b0a32e0cSBarry Smith ierr = PetscMalloc(nsends*sizeof(MPI_Status),&send_status);CHKERRQ(ierr); 7853a96401aSBarry Smith ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr); 7863a96401aSBarry Smith ierr = PetscFree(send_status);CHKERRQ(ierr); 7873a96401aSBarry Smith } 78889d82c54SBarry Smith ierr = PetscFree(send_waits);CHKERRQ(ierr); 7893a96401aSBarry Smith ierr = PetscFree(sends);CHKERRQ(ierr); 7903677ff5aSBarry Smith ierr = PetscFree(nprocs);CHKERRQ(ierr); 7913677ff5aSBarry Smith 7923677ff5aSBarry Smith /* pack messages to send back to local owners */ 79330dcb7c9SBarry Smith starts[0] = 0; 79430dcb7c9SBarry Smith for (i=1; i<ng; i++) { 79530dcb7c9SBarry Smith if (nownedsenders[i-1] > 1) starts[i] = starts[i-1] + nownedsenders[i-1]; 79630dcb7c9SBarry Smith else starts[i] = starts[i-1]; 79730dcb7c9SBarry Smith } 79830dcb7c9SBarry Smith nsends2 = nrecvs; 79932dcc486SBarry Smith ierr = PetscMalloc((nsends2+1)*sizeof(PetscInt),&nprocs);CHKERRQ(ierr); /* length of each message */ 80030dcb7c9SBarry Smith for (i=0; i<nrecvs; i++) { 80130dcb7c9SBarry Smith nprocs[i] = 1; 80230dcb7c9SBarry Smith for (j=0; j<len[i]; j++) { 80330dcb7c9SBarry Smith node = recvs[2*i*nmax+2*j]-rstart; 804f6e5521dSKarl Rupp if (nownedsenders[node] > 1) nprocs[i] += 2 + nownedsenders[node]; 80530dcb7c9SBarry Smith } 80630dcb7c9SBarry Smith } 807f6e5521dSKarl Rupp nt = 0; 808f6e5521dSKarl Rupp for (i=0; i<nsends2; i++) nt += nprocs[i]; 809f6e5521dSKarl Rupp 81032dcc486SBarry Smith ierr = PetscMalloc((nt+1)*sizeof(PetscInt),&sends2);CHKERRQ(ierr); 81132dcc486SBarry Smith ierr = PetscMalloc((nsends2+1)*sizeof(PetscInt),&starts2);CHKERRQ(ierr); 812f6e5521dSKarl Rupp 813f6e5521dSKarl Rupp starts2[0] = 0; 814f6e5521dSKarl Rupp for (i=1; i<nsends2; i++) starts2[i] = starts2[i-1] + nprocs[i-1]; 81530dcb7c9SBarry Smith /* 81630dcb7c9SBarry Smith Each message is 1 + nprocs[i] long, and consists of 81730dcb7c9SBarry Smith (0) the number of nodes being sent back 81830dcb7c9SBarry Smith (1) the local node number, 81930dcb7c9SBarry Smith (2) the number of processors sharing it, 82030dcb7c9SBarry Smith (3) the processors sharing it 82130dcb7c9SBarry Smith */ 82230dcb7c9SBarry Smith for (i=0; i<nsends2; i++) { 82330dcb7c9SBarry Smith cnt = 1; 82430dcb7c9SBarry Smith sends2[starts2[i]] = 0; 82530dcb7c9SBarry Smith for (j=0; j<len[i]; j++) { 82630dcb7c9SBarry Smith node = recvs[2*i*nmax+2*j]-rstart; 82730dcb7c9SBarry Smith if (nownedsenders[node] > 1) { 82830dcb7c9SBarry Smith sends2[starts2[i]]++; 82930dcb7c9SBarry Smith sends2[starts2[i]+cnt++] = recvs[2*i*nmax+2*j+1]; 83030dcb7c9SBarry Smith sends2[starts2[i]+cnt++] = nownedsenders[node]; 83132dcc486SBarry Smith ierr = PetscMemcpy(&sends2[starts2[i]+cnt],&ownedsenders[starts[node]],nownedsenders[node]*sizeof(PetscInt));CHKERRQ(ierr); 83230dcb7c9SBarry Smith cnt += nownedsenders[node]; 83330dcb7c9SBarry Smith } 83430dcb7c9SBarry Smith } 83530dcb7c9SBarry Smith } 83630dcb7c9SBarry Smith 83730dcb7c9SBarry Smith /* receive the message lengths */ 83830dcb7c9SBarry Smith nrecvs2 = nsends; 83932dcc486SBarry Smith ierr = PetscMalloc((nrecvs2+1)*sizeof(PetscInt),&lens2);CHKERRQ(ierr); 84032dcc486SBarry Smith ierr = PetscMalloc((nrecvs2+1)*sizeof(PetscInt),&starts3);CHKERRQ(ierr); 841d44834fbSBarry Smith ierr = PetscMalloc((nrecvs2+1)*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr); 84230dcb7c9SBarry Smith for (i=0; i<nrecvs2; i++) { 843d44834fbSBarry Smith ierr = MPI_Irecv(&lens2[i],1,MPIU_INT,dest[i],tag2,comm,recv_waits+i);CHKERRQ(ierr); 84430dcb7c9SBarry Smith } 845d44834fbSBarry Smith 8468a8e0b3aSBarry Smith /* send the message lengths */ 8478a8e0b3aSBarry Smith for (i=0; i<nsends2; i++) { 8488a8e0b3aSBarry Smith ierr = MPI_Send(&nprocs[i],1,MPIU_INT,source[i],tag2,comm);CHKERRQ(ierr); 8498a8e0b3aSBarry Smith } 8508a8e0b3aSBarry Smith 851d44834fbSBarry Smith /* wait on receives of lens */ 8520c468ba9SBarry Smith if (nrecvs2) { 8530c468ba9SBarry Smith ierr = PetscMalloc(nrecvs2*sizeof(MPI_Status),&recv_statuses);CHKERRQ(ierr); 854d44834fbSBarry Smith ierr = MPI_Waitall(nrecvs2,recv_waits,recv_statuses);CHKERRQ(ierr); 855d44834fbSBarry Smith ierr = PetscFree(recv_statuses);CHKERRQ(ierr); 8560c468ba9SBarry Smith } 857a2ea699eSBarry Smith ierr = PetscFree(recv_waits);CHKERRQ(ierr); 858d44834fbSBarry Smith 85930dcb7c9SBarry Smith starts3[0] = 0; 860d44834fbSBarry Smith nt = 0; 86130dcb7c9SBarry Smith for (i=0; i<nrecvs2-1; i++) { 86230dcb7c9SBarry Smith starts3[i+1] = starts3[i] + lens2[i]; 863d44834fbSBarry Smith nt += lens2[i]; 86430dcb7c9SBarry Smith } 86576466f69SStefano Zampini if (nrecvs2) nt += lens2[nrecvs2-1]; 866d44834fbSBarry Smith 86732dcc486SBarry Smith ierr = PetscMalloc((nt+1)*sizeof(PetscInt),&recvs2);CHKERRQ(ierr); 868b0a32e0cSBarry Smith ierr = PetscMalloc((nrecvs2+1)*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr); 86952b72c4aSBarry Smith for (i=0; i<nrecvs2; i++) { 87032dcc486SBarry Smith ierr = MPI_Irecv(recvs2+starts3[i],lens2[i],MPIU_INT,dest[i],tag3,comm,recv_waits+i);CHKERRQ(ierr); 87130dcb7c9SBarry Smith } 87230dcb7c9SBarry Smith 87330dcb7c9SBarry Smith /* send the messages */ 874b0a32e0cSBarry Smith ierr = PetscMalloc((nsends2+1)*sizeof(MPI_Request),&send_waits);CHKERRQ(ierr); 87530dcb7c9SBarry Smith for (i=0; i<nsends2; i++) { 87632dcc486SBarry Smith ierr = MPI_Isend(sends2+starts2[i],nprocs[i],MPIU_INT,source[i],tag3,comm,send_waits+i);CHKERRQ(ierr); 87730dcb7c9SBarry Smith } 87830dcb7c9SBarry Smith 87930dcb7c9SBarry Smith /* wait on receives */ 8800c468ba9SBarry Smith if (nrecvs2) { 8810c468ba9SBarry Smith ierr = PetscMalloc(nrecvs2*sizeof(MPI_Status),&recv_statuses);CHKERRQ(ierr); 88230dcb7c9SBarry Smith ierr = MPI_Waitall(nrecvs2,recv_waits,recv_statuses);CHKERRQ(ierr); 88330dcb7c9SBarry Smith ierr = PetscFree(recv_statuses);CHKERRQ(ierr); 8840c468ba9SBarry Smith } 88530dcb7c9SBarry Smith ierr = PetscFree(recv_waits);CHKERRQ(ierr); 88630dcb7c9SBarry Smith ierr = PetscFree(nprocs);CHKERRQ(ierr); 88730dcb7c9SBarry Smith 88807b52d57SBarry Smith if (debug) { /* ----------------------------------- */ 88930dcb7c9SBarry Smith cnt = 0; 89030dcb7c9SBarry Smith for (i=0; i<nrecvs2; i++) { 89130dcb7c9SBarry Smith nt = recvs2[cnt++]; 89230dcb7c9SBarry Smith for (j=0; j<nt; j++) { 89330dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"[%d] local node %d number of subdomains %d: ",rank,recvs2[cnt],recvs2[cnt+1]);CHKERRQ(ierr); 89430dcb7c9SBarry Smith for (k=0; k<recvs2[cnt+1]; k++) { 89530dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"%d ",recvs2[cnt+2+k]);CHKERRQ(ierr); 89630dcb7c9SBarry Smith } 89730dcb7c9SBarry Smith cnt += 2 + recvs2[cnt+1]; 89830dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"\n");CHKERRQ(ierr); 89930dcb7c9SBarry Smith } 90030dcb7c9SBarry Smith } 90130dcb7c9SBarry Smith ierr = PetscSynchronizedFlush(comm);CHKERRQ(ierr); 90207b52d57SBarry Smith } /* ----------------------------------- */ 90330dcb7c9SBarry Smith 90430dcb7c9SBarry Smith /* count number subdomains for each local node */ 90532dcc486SBarry Smith ierr = PetscMalloc(size*sizeof(PetscInt),&nprocs);CHKERRQ(ierr); 90632dcc486SBarry Smith ierr = PetscMemzero(nprocs,size*sizeof(PetscInt));CHKERRQ(ierr); 90730dcb7c9SBarry Smith cnt = 0; 90830dcb7c9SBarry Smith for (i=0; i<nrecvs2; i++) { 90930dcb7c9SBarry Smith nt = recvs2[cnt++]; 91030dcb7c9SBarry Smith for (j=0; j<nt; j++) { 911f6e5521dSKarl Rupp for (k=0; k<recvs2[cnt+1]; k++) nprocs[recvs2[cnt+2+k]]++; 91230dcb7c9SBarry Smith cnt += 2 + recvs2[cnt+1]; 91330dcb7c9SBarry Smith } 91430dcb7c9SBarry Smith } 91530dcb7c9SBarry Smith nt = 0; for (i=0; i<size; i++) nt += (nprocs[i] > 0); 91630dcb7c9SBarry Smith *nproc = nt; 91732dcc486SBarry Smith ierr = PetscMalloc((nt+1)*sizeof(PetscInt),procs);CHKERRQ(ierr); 91832dcc486SBarry Smith ierr = PetscMalloc((nt+1)*sizeof(PetscInt),numprocs);CHKERRQ(ierr); 91932dcc486SBarry Smith ierr = PetscMalloc((nt+1)*sizeof(PetscInt*),indices);CHKERRQ(ierr); 9200298fd71SBarry Smith for (i=0;i<nt+1;i++) (*indices)[i]=NULL; 92132dcc486SBarry Smith ierr = PetscMalloc(size*sizeof(PetscInt),&bprocs);CHKERRQ(ierr); 92230dcb7c9SBarry Smith cnt = 0; 92330dcb7c9SBarry Smith for (i=0; i<size; i++) { 92430dcb7c9SBarry Smith if (nprocs[i] > 0) { 92530dcb7c9SBarry Smith bprocs[i] = cnt; 92630dcb7c9SBarry Smith (*procs)[cnt] = i; 92730dcb7c9SBarry Smith (*numprocs)[cnt] = nprocs[i]; 92832dcc486SBarry Smith ierr = PetscMalloc(nprocs[i]*sizeof(PetscInt),&(*indices)[cnt]);CHKERRQ(ierr); 92930dcb7c9SBarry Smith cnt++; 93030dcb7c9SBarry Smith } 93130dcb7c9SBarry Smith } 93230dcb7c9SBarry Smith 93330dcb7c9SBarry Smith /* make the list of subdomains for each nontrivial local node */ 93432dcc486SBarry Smith ierr = PetscMemzero(*numprocs,nt*sizeof(PetscInt));CHKERRQ(ierr); 93530dcb7c9SBarry Smith cnt = 0; 93630dcb7c9SBarry Smith for (i=0; i<nrecvs2; i++) { 93730dcb7c9SBarry Smith nt = recvs2[cnt++]; 93830dcb7c9SBarry Smith for (j=0; j<nt; j++) { 939f6e5521dSKarl Rupp for (k=0; k<recvs2[cnt+1]; k++) (*indices)[bprocs[recvs2[cnt+2+k]]][(*numprocs)[bprocs[recvs2[cnt+2+k]]]++] = recvs2[cnt]; 94030dcb7c9SBarry Smith cnt += 2 + recvs2[cnt+1]; 94130dcb7c9SBarry Smith } 94230dcb7c9SBarry Smith } 94330dcb7c9SBarry Smith ierr = PetscFree(bprocs);CHKERRQ(ierr); 94407b52d57SBarry Smith ierr = PetscFree(recvs2);CHKERRQ(ierr); 94530dcb7c9SBarry Smith 94607b52d57SBarry Smith /* sort the node indexing by their global numbers */ 94707b52d57SBarry Smith nt = *nproc; 94807b52d57SBarry Smith for (i=0; i<nt; i++) { 94932dcc486SBarry Smith ierr = PetscMalloc(((*numprocs)[i])*sizeof(PetscInt),&tmp);CHKERRQ(ierr); 950f6e5521dSKarl Rupp for (j=0; j<(*numprocs)[i]; j++) tmp[j] = lindices[(*indices)[i][j]]; 95107b52d57SBarry Smith ierr = PetscSortIntWithArray((*numprocs)[i],tmp,(*indices)[i]);CHKERRQ(ierr); 95207b52d57SBarry Smith ierr = PetscFree(tmp);CHKERRQ(ierr); 95307b52d57SBarry Smith } 95407b52d57SBarry Smith 95507b52d57SBarry Smith if (debug) { /* ----------------------------------- */ 95630dcb7c9SBarry Smith nt = *nproc; 95730dcb7c9SBarry Smith for (i=0; i<nt; i++) { 95830dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"[%d] subdomain %d number of indices %d: ",rank,(*procs)[i],(*numprocs)[i]);CHKERRQ(ierr); 95930dcb7c9SBarry Smith for (j=0; j<(*numprocs)[i]; j++) { 96030dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"%d ",(*indices)[i][j]);CHKERRQ(ierr); 96130dcb7c9SBarry Smith } 96230dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"\n");CHKERRQ(ierr); 96330dcb7c9SBarry Smith } 96430dcb7c9SBarry Smith ierr = PetscSynchronizedFlush(comm);CHKERRQ(ierr); 96507b52d57SBarry Smith } /* ----------------------------------- */ 96630dcb7c9SBarry Smith 96730dcb7c9SBarry Smith /* wait on sends */ 96830dcb7c9SBarry Smith if (nsends2) { 969b0a32e0cSBarry Smith ierr = PetscMalloc(nsends2*sizeof(MPI_Status),&send_status);CHKERRQ(ierr); 97030dcb7c9SBarry Smith ierr = MPI_Waitall(nsends2,send_waits,send_status);CHKERRQ(ierr); 97130dcb7c9SBarry Smith ierr = PetscFree(send_status);CHKERRQ(ierr); 97230dcb7c9SBarry Smith } 97330dcb7c9SBarry Smith 97430dcb7c9SBarry Smith ierr = PetscFree(starts3);CHKERRQ(ierr); 97530dcb7c9SBarry Smith ierr = PetscFree(dest);CHKERRQ(ierr); 97630dcb7c9SBarry Smith ierr = PetscFree(send_waits);CHKERRQ(ierr); 9773677ff5aSBarry Smith 978bc8ff85bSBarry Smith ierr = PetscFree(nownedsenders);CHKERRQ(ierr); 979bc8ff85bSBarry Smith ierr = PetscFree(ownedsenders);CHKERRQ(ierr); 980bc8ff85bSBarry Smith ierr = PetscFree(starts);CHKERRQ(ierr); 98130dcb7c9SBarry Smith ierr = PetscFree(starts2);CHKERRQ(ierr); 98230dcb7c9SBarry Smith ierr = PetscFree(lens2);CHKERRQ(ierr); 98389d82c54SBarry Smith 98489d82c54SBarry Smith ierr = PetscFree(source);CHKERRQ(ierr); 98597f1f81fSBarry Smith ierr = PetscFree(len);CHKERRQ(ierr); 98689d82c54SBarry Smith ierr = PetscFree(recvs);CHKERRQ(ierr); 9873a96401aSBarry Smith ierr = PetscFree(nprocs);CHKERRQ(ierr); 98830dcb7c9SBarry Smith ierr = PetscFree(sends2);CHKERRQ(ierr); 98924cf384cSBarry Smith 99024cf384cSBarry Smith /* put the information about myself as the first entry in the list */ 99124cf384cSBarry Smith first_procs = (*procs)[0]; 99224cf384cSBarry Smith first_numprocs = (*numprocs)[0]; 99324cf384cSBarry Smith first_indices = (*indices)[0]; 99424cf384cSBarry Smith for (i=0; i<*nproc; i++) { 99524cf384cSBarry Smith if ((*procs)[i] == rank) { 99624cf384cSBarry Smith (*procs)[0] = (*procs)[i]; 99724cf384cSBarry Smith (*numprocs)[0] = (*numprocs)[i]; 99824cf384cSBarry Smith (*indices)[0] = (*indices)[i]; 99924cf384cSBarry Smith (*procs)[i] = first_procs; 100024cf384cSBarry Smith (*numprocs)[i] = first_numprocs; 100124cf384cSBarry Smith (*indices)[i] = first_indices; 100224cf384cSBarry Smith break; 100324cf384cSBarry Smith } 100424cf384cSBarry Smith } 100589d82c54SBarry Smith PetscFunctionReturn(0); 100689d82c54SBarry Smith } 100789d82c54SBarry Smith 10084a2ae208SSatish Balay #undef __FUNCT__ 10094a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingRestoreInfo" 101007b52d57SBarry Smith /*@C 101107b52d57SBarry Smith ISLocalToGlobalMappingRestoreInfo - Frees the memory allocated by ISLocalToGlobalMappingGetInfo() 101289d82c54SBarry Smith 101307b52d57SBarry Smith Collective on ISLocalToGlobalMapping 101407b52d57SBarry Smith 101507b52d57SBarry Smith Input Parameters: 101607b52d57SBarry Smith . mapping - the mapping from local to global indexing 101707b52d57SBarry Smith 101807b52d57SBarry Smith Output Parameter: 101907b52d57SBarry Smith + nproc - number of processors that are connected to this one 102007b52d57SBarry Smith . proc - neighboring processors 102107b52d57SBarry Smith . numproc - number of indices for each processor 102207b52d57SBarry Smith - indices - indices of local nodes shared with neighbor (sorted by global numbering) 102307b52d57SBarry Smith 102407b52d57SBarry Smith Level: advanced 102507b52d57SBarry Smith 102607b52d57SBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreateIS(), ISLocalToGlobalMappingCreate(), 102707b52d57SBarry Smith ISLocalToGlobalMappingGetInfo() 102807b52d57SBarry Smith @*/ 10297087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingRestoreInfo(ISLocalToGlobalMapping mapping,PetscInt *nproc,PetscInt *procs[],PetscInt *numprocs[],PetscInt **indices[]) 103007b52d57SBarry Smith { 10316849ba73SBarry Smith PetscErrorCode ierr; 103232dcc486SBarry Smith PetscInt i; 103307b52d57SBarry Smith 103407b52d57SBarry Smith PetscFunctionBegin; 103505b42c5fSBarry Smith ierr = PetscFree(*procs);CHKERRQ(ierr); 103605b42c5fSBarry Smith ierr = PetscFree(*numprocs);CHKERRQ(ierr); 103700ff320aSBarry Smith if (*indices) { 103805b42c5fSBarry Smith ierr = PetscFree((*indices)[0]);CHKERRQ(ierr); 103900ff320aSBarry Smith for (i=1; i<*nproc; i++) { 104005b42c5fSBarry Smith ierr = PetscFree((*indices)[i]);CHKERRQ(ierr); 104107b52d57SBarry Smith } 104207b52d57SBarry Smith ierr = PetscFree(*indices);CHKERRQ(ierr); 104324cf384cSBarry Smith } 104407b52d57SBarry Smith PetscFunctionReturn(0); 104507b52d57SBarry Smith } 104686994e45SJed Brown 104786994e45SJed Brown #undef __FUNCT__ 104886994e45SJed Brown #define __FUNCT__ "ISLocalToGlobalMappingGetIndices" 104986994e45SJed Brown /*@C 105086994e45SJed Brown ISLocalToGlobalMappingGetIndices - Get global indices for every local point 105186994e45SJed Brown 105286994e45SJed Brown Not Collective 105386994e45SJed Brown 105486994e45SJed Brown Input Arguments: 105586994e45SJed Brown . ltog - local to global mapping 105686994e45SJed Brown 105786994e45SJed Brown Output Arguments: 105886994e45SJed Brown . array - array of indices 105986994e45SJed Brown 106086994e45SJed Brown Level: advanced 106186994e45SJed Brown 106286994e45SJed Brown .seealso: ISLocalToGlobalMappingCreate(), ISLocalToGlobalMappingApply(), ISLocalToGlobalMappingRestoreIndices() 106386994e45SJed Brown @*/ 10647087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingGetIndices(ISLocalToGlobalMapping ltog,const PetscInt **array) 106586994e45SJed Brown { 106686994e45SJed Brown PetscFunctionBegin; 106786994e45SJed Brown PetscValidHeaderSpecific(ltog,IS_LTOGM_CLASSID,1); 106886994e45SJed Brown PetscValidPointer(array,2); 106986994e45SJed Brown *array = ltog->indices; 107086994e45SJed Brown PetscFunctionReturn(0); 107186994e45SJed Brown } 107286994e45SJed Brown 107386994e45SJed Brown #undef __FUNCT__ 107486994e45SJed Brown #define __FUNCT__ "ISLocalToGlobalMappingRestoreIndices" 107586994e45SJed Brown /*@C 107686994e45SJed Brown ISLocalToGlobalMappingRestoreIndices - Restore indices obtained with ISLocalToGlobalMappingRestoreIndices() 107786994e45SJed Brown 107886994e45SJed Brown Not Collective 107986994e45SJed Brown 108086994e45SJed Brown Input Arguments: 108186994e45SJed Brown + ltog - local to global mapping 108286994e45SJed Brown - array - array of indices 108386994e45SJed Brown 108486994e45SJed Brown Level: advanced 108586994e45SJed Brown 108686994e45SJed Brown .seealso: ISLocalToGlobalMappingCreate(), ISLocalToGlobalMappingApply(), ISLocalToGlobalMappingGetIndices() 108786994e45SJed Brown @*/ 10887087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingRestoreIndices(ISLocalToGlobalMapping ltog,const PetscInt **array) 108986994e45SJed Brown { 109086994e45SJed Brown PetscFunctionBegin; 109186994e45SJed Brown PetscValidHeaderSpecific(ltog,IS_LTOGM_CLASSID,1); 109286994e45SJed Brown PetscValidPointer(array,2); 109386994e45SJed Brown if (*array != ltog->indices) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_BADPTR,"Trying to return mismatched pointer"); 10940298fd71SBarry Smith *array = NULL; 109586994e45SJed Brown PetscFunctionReturn(0); 109686994e45SJed Brown } 1097f7efa3c7SJed Brown 1098f7efa3c7SJed Brown #undef __FUNCT__ 1099f7efa3c7SJed Brown #define __FUNCT__ "ISLocalToGlobalMappingConcatenate" 1100f7efa3c7SJed Brown /*@C 1101f7efa3c7SJed Brown ISLocalToGlobalMappingConcatenate - Create a new mapping that concatenates a list of mappings 1102f7efa3c7SJed Brown 1103f7efa3c7SJed Brown Not Collective 1104f7efa3c7SJed Brown 1105f7efa3c7SJed Brown Input Arguments: 1106f7efa3c7SJed Brown + comm - communicator for the new mapping, must contain the communicator of every mapping to concatenate 1107f7efa3c7SJed Brown . n - number of mappings to concatenate 1108f7efa3c7SJed Brown - ltogs - local to global mappings 1109f7efa3c7SJed Brown 1110f7efa3c7SJed Brown Output Arguments: 1111f7efa3c7SJed Brown . ltogcat - new mapping 1112f7efa3c7SJed Brown 1113f7efa3c7SJed Brown Level: advanced 1114f7efa3c7SJed Brown 1115f7efa3c7SJed Brown .seealso: ISLocalToGlobalMappingCreate() 1116f7efa3c7SJed Brown @*/ 1117f7efa3c7SJed Brown PetscErrorCode ISLocalToGlobalMappingConcatenate(MPI_Comm comm,PetscInt n,const ISLocalToGlobalMapping ltogs[],ISLocalToGlobalMapping *ltogcat) 1118f7efa3c7SJed Brown { 1119f7efa3c7SJed Brown PetscInt i,cnt,m,*idx; 1120f7efa3c7SJed Brown PetscErrorCode ierr; 1121f7efa3c7SJed Brown 1122f7efa3c7SJed Brown PetscFunctionBegin; 1123f7efa3c7SJed Brown if (n < 0) SETERRQ1(comm,PETSC_ERR_ARG_OUTOFRANGE,"Must have a non-negative number of mappings, given %D",n); 1124f7efa3c7SJed Brown if (n > 0) PetscValidPointer(ltogs,3); 1125f7efa3c7SJed Brown for (i=0; i<n; i++) PetscValidHeaderSpecific(ltogs[i],IS_LTOGM_CLASSID,3); 1126f7efa3c7SJed Brown PetscValidPointer(ltogcat,4); 1127f7efa3c7SJed Brown for (cnt=0,i=0; i<n; i++) { 1128f7efa3c7SJed Brown ierr = ISLocalToGlobalMappingGetSize(ltogs[i],&m);CHKERRQ(ierr); 1129f7efa3c7SJed Brown cnt += m; 1130f7efa3c7SJed Brown } 1131f7efa3c7SJed Brown ierr = PetscMalloc(cnt*sizeof(PetscInt),&idx);CHKERRQ(ierr); 1132f7efa3c7SJed Brown for (cnt=0,i=0; i<n; i++) { 1133f7efa3c7SJed Brown const PetscInt *subidx; 1134f7efa3c7SJed Brown ierr = ISLocalToGlobalMappingGetSize(ltogs[i],&m);CHKERRQ(ierr); 1135f7efa3c7SJed Brown ierr = ISLocalToGlobalMappingGetIndices(ltogs[i],&subidx);CHKERRQ(ierr); 1136f7efa3c7SJed Brown ierr = PetscMemcpy(&idx[cnt],subidx,m*sizeof(PetscInt));CHKERRQ(ierr); 1137f7efa3c7SJed Brown ierr = ISLocalToGlobalMappingRestoreIndices(ltogs[i],&subidx);CHKERRQ(ierr); 1138f7efa3c7SJed Brown cnt += m; 1139f7efa3c7SJed Brown } 1140f7efa3c7SJed Brown ierr = ISLocalToGlobalMappingCreate(comm,cnt,idx,PETSC_OWN_POINTER,ltogcat);CHKERRQ(ierr); 1141f7efa3c7SJed Brown PetscFunctionReturn(0); 1142f7efa3c7SJed Brown } 1143