12362add9SBarry Smith 2af0996ceSBarry Smith #include <petsc/private/isimpl.h> /*I "petscis.h" I*/ 3*bbf7bc21SLisandro Dalcin #include <petsc/private/hash.h> 40c312b8eSJed Brown #include <petscsf.h> 5665c2dedSJed Brown #include <petscviewer.h> 62362add9SBarry Smith 77087cfbeSBarry Smith PetscClassId IS_LTOGM_CLASSID; 8268a049cSStefano Zampini static PetscErrorCode ISLocalToGlobalMappingGetBlockInfo_Private(ISLocalToGlobalMapping,PetscInt*,PetscInt**,PetscInt**,PetscInt***); 98e58c17dSMatthew Knepley 10413f72f0SBarry Smith typedef struct { 11413f72f0SBarry Smith PetscInt *globals; 12413f72f0SBarry Smith } ISLocalToGlobalMapping_Basic; 13413f72f0SBarry Smith 14413f72f0SBarry Smith typedef struct { 15413f72f0SBarry Smith PetscHashI globalht; 16413f72f0SBarry Smith } ISLocalToGlobalMapping_Hash; 17413f72f0SBarry Smith 18413f72f0SBarry Smith 19413f72f0SBarry Smith /* -----------------------------------------------------------------------------------------*/ 20413f72f0SBarry Smith 21413f72f0SBarry Smith /* 22413f72f0SBarry Smith Creates the global mapping information in the ISLocalToGlobalMapping structure 23413f72f0SBarry Smith 24413f72f0SBarry Smith If the user has not selected how to handle the global to local mapping then use HASH for "large" problems 25413f72f0SBarry Smith */ 26413f72f0SBarry Smith static PetscErrorCode ISGlobalToLocalMappingSetUp(ISLocalToGlobalMapping mapping) 27413f72f0SBarry Smith { 28413f72f0SBarry Smith PetscInt i,*idx = mapping->indices,n = mapping->n,end,start; 29413f72f0SBarry Smith PetscErrorCode ierr; 30413f72f0SBarry Smith 31413f72f0SBarry Smith PetscFunctionBegin; 32413f72f0SBarry Smith if (mapping->data) PetscFunctionReturn(0); 33413f72f0SBarry Smith end = 0; 34413f72f0SBarry Smith start = PETSC_MAX_INT; 35413f72f0SBarry Smith 36413f72f0SBarry Smith for (i=0; i<n; i++) { 37413f72f0SBarry Smith if (idx[i] < 0) continue; 38413f72f0SBarry Smith if (idx[i] < start) start = idx[i]; 39413f72f0SBarry Smith if (idx[i] > end) end = idx[i]; 40413f72f0SBarry Smith } 41413f72f0SBarry Smith if (start > end) {start = 0; end = -1;} 42413f72f0SBarry Smith mapping->globalstart = start; 43413f72f0SBarry Smith mapping->globalend = end; 44413f72f0SBarry Smith if (!((PetscObject)mapping)->type_name) { 45413f72f0SBarry Smith if ((end - start) > PetscMax(4*n,1000000)) { 46413f72f0SBarry Smith ierr = ISLocalToGlobalMappingSetType(mapping,ISLOCALTOGLOBALMAPPINGHASH); 47413f72f0SBarry Smith } else { 48413f72f0SBarry Smith ierr = ISLocalToGlobalMappingSetType(mapping,ISLOCALTOGLOBALMAPPINGBASIC); 49413f72f0SBarry Smith } 50413f72f0SBarry Smith } 51413f72f0SBarry Smith ierr = (*mapping->ops->globaltolocalmappingsetup)(mapping);CHKERRQ(ierr); 52413f72f0SBarry Smith PetscFunctionReturn(0); 53413f72f0SBarry Smith } 54413f72f0SBarry Smith 55413f72f0SBarry Smith static PetscErrorCode ISGlobalToLocalMappingSetUp_Basic(ISLocalToGlobalMapping mapping) 56413f72f0SBarry Smith { 57413f72f0SBarry Smith PetscErrorCode ierr; 58413f72f0SBarry Smith PetscInt i,*idx = mapping->indices,n = mapping->n,end,start,*globals; 59413f72f0SBarry Smith ISLocalToGlobalMapping_Basic *map; 60413f72f0SBarry Smith 61413f72f0SBarry Smith PetscFunctionBegin; 62413f72f0SBarry Smith start = mapping->globalstart; 63413f72f0SBarry Smith end = mapping->globalend; 64413f72f0SBarry Smith ierr = PetscNew(&map);CHKERRQ(ierr); 65413f72f0SBarry Smith ierr = PetscMalloc1(end-start+2,&globals);CHKERRQ(ierr); 66413f72f0SBarry Smith map->globals = globals; 67413f72f0SBarry Smith for (i=0; i<end-start+1; i++) globals[i] = -1; 68413f72f0SBarry Smith for (i=0; i<n; i++) { 69413f72f0SBarry Smith if (idx[i] < 0) continue; 70413f72f0SBarry Smith globals[idx[i] - start] = i; 71413f72f0SBarry Smith } 72413f72f0SBarry Smith mapping->data = (void*)map; 73413f72f0SBarry Smith ierr = PetscLogObjectMemory((PetscObject)mapping,(end-start+1)*sizeof(PetscInt));CHKERRQ(ierr); 74413f72f0SBarry Smith PetscFunctionReturn(0); 75413f72f0SBarry Smith } 76413f72f0SBarry Smith 77413f72f0SBarry Smith static PetscErrorCode ISGlobalToLocalMappingSetUp_Hash(ISLocalToGlobalMapping mapping) 78413f72f0SBarry Smith { 79413f72f0SBarry Smith PetscErrorCode ierr; 80413f72f0SBarry Smith PetscInt i,*idx = mapping->indices,n = mapping->n; 81413f72f0SBarry Smith ISLocalToGlobalMapping_Hash *map; 82413f72f0SBarry Smith 83413f72f0SBarry Smith PetscFunctionBegin; 84413f72f0SBarry Smith ierr = PetscNew(&map);CHKERRQ(ierr); 85413f72f0SBarry Smith PetscHashICreate(map->globalht); 86413f72f0SBarry Smith for (i=0; i<n; i++ ) { 87413f72f0SBarry Smith if (idx[i] < 0) continue; 88413f72f0SBarry Smith PetscHashIAdd(map->globalht, idx[i], i); 89413f72f0SBarry Smith } 90413f72f0SBarry Smith mapping->data = (void*)map; 91413f72f0SBarry Smith ierr = PetscLogObjectMemory((PetscObject)mapping,2*n*sizeof(PetscInt));CHKERRQ(ierr); 92413f72f0SBarry Smith PetscFunctionReturn(0); 93413f72f0SBarry Smith } 94413f72f0SBarry Smith 95413f72f0SBarry Smith static PetscErrorCode ISLocalToGlobalMappingDestroy_Basic(ISLocalToGlobalMapping mapping) 96413f72f0SBarry Smith { 97413f72f0SBarry Smith PetscErrorCode ierr; 98413f72f0SBarry Smith ISLocalToGlobalMapping_Basic *map = (ISLocalToGlobalMapping_Basic *)mapping->data; 99413f72f0SBarry Smith 100413f72f0SBarry Smith PetscFunctionBegin; 101413f72f0SBarry Smith if (!map) PetscFunctionReturn(0); 102413f72f0SBarry Smith ierr = PetscFree(map->globals);CHKERRQ(ierr); 103413f72f0SBarry Smith ierr = PetscFree(mapping->data);CHKERRQ(ierr); 104413f72f0SBarry Smith PetscFunctionReturn(0); 105413f72f0SBarry Smith } 106413f72f0SBarry Smith 107413f72f0SBarry Smith static PetscErrorCode ISLocalToGlobalMappingDestroy_Hash(ISLocalToGlobalMapping mapping) 108413f72f0SBarry Smith { 109413f72f0SBarry Smith PetscErrorCode ierr; 110413f72f0SBarry Smith ISLocalToGlobalMapping_Hash *map = (ISLocalToGlobalMapping_Hash*)mapping->data; 111413f72f0SBarry Smith 112413f72f0SBarry Smith PetscFunctionBegin; 113413f72f0SBarry Smith if (!map) PetscFunctionReturn(0); 114413f72f0SBarry Smith PetscHashIDestroy(map->globalht); 115413f72f0SBarry Smith ierr = PetscFree(mapping->data);CHKERRQ(ierr); 116413f72f0SBarry Smith PetscFunctionReturn(0); 117413f72f0SBarry Smith } 118413f72f0SBarry Smith 119413f72f0SBarry Smith #define GTOLTYPE _Basic 120413f72f0SBarry Smith #define GTOLNAME _Basic 121413f72f0SBarry Smith #define GTOL(g, local) do { \ 122413f72f0SBarry Smith local = map->globals[g/bs - start]; \ 123413f72f0SBarry Smith local = bs*local + (g % bs); \ 124413f72f0SBarry Smith } while (0) 125413f72f0SBarry Smith #include <../src/vec/is/utils/isltog.h> 126413f72f0SBarry Smith 127413f72f0SBarry Smith #define GTOLTYPE _Basic 128413f72f0SBarry Smith #define GTOLNAME Block_Basic 129413f72f0SBarry Smith #define GTOL(g, local) do { \ 130413f72f0SBarry Smith local = map->globals[g - start]; \ 131413f72f0SBarry Smith } while (0) 132413f72f0SBarry Smith #include <../src/vec/is/utils/isltog.h> 133413f72f0SBarry Smith 134413f72f0SBarry Smith #define GTOLTYPE _Hash 135413f72f0SBarry Smith #define GTOLNAME _Hash 136413f72f0SBarry Smith #define GTOL(g, local) do { \ 137413f72f0SBarry Smith PetscHashIMap(map->globalht,g/bs,local); \ 138413f72f0SBarry Smith local = bs*local + (g % bs); \ 139413f72f0SBarry Smith } while (0) 140413f72f0SBarry Smith #include <../src/vec/is/utils/isltog.h> 141413f72f0SBarry Smith 142413f72f0SBarry Smith #define GTOLTYPE _Hash 143413f72f0SBarry Smith #define GTOLNAME Block_Hash 144413f72f0SBarry Smith #define GTOL(g, local) do { \ 145413f72f0SBarry Smith PetscHashIMap(map->globalht,g,local); \ 146413f72f0SBarry Smith } while (0) 147413f72f0SBarry Smith #include <../src/vec/is/utils/isltog.h> 148413f72f0SBarry Smith 1496658fb44Sstefano_zampini /*@ 1506658fb44Sstefano_zampini ISLocalToGlobalMappingDuplicate - Duplicates the local to global mapping object 1516658fb44Sstefano_zampini 1526658fb44Sstefano_zampini Not Collective 1536658fb44Sstefano_zampini 1546658fb44Sstefano_zampini Input Parameter: 1556658fb44Sstefano_zampini . ltog - local to global mapping 1566658fb44Sstefano_zampini 1576658fb44Sstefano_zampini Output Parameter: 1586658fb44Sstefano_zampini . nltog - the duplicated local to global mapping 1596658fb44Sstefano_zampini 1606658fb44Sstefano_zampini Level: advanced 1616658fb44Sstefano_zampini 1626658fb44Sstefano_zampini Concepts: mapping^local to global 1636658fb44Sstefano_zampini 1646658fb44Sstefano_zampini .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreate() 1656658fb44Sstefano_zampini @*/ 1666658fb44Sstefano_zampini PetscErrorCode ISLocalToGlobalMappingDuplicate(ISLocalToGlobalMapping ltog,ISLocalToGlobalMapping* nltog) 1676658fb44Sstefano_zampini { 1686658fb44Sstefano_zampini PetscErrorCode ierr; 1696658fb44Sstefano_zampini 1706658fb44Sstefano_zampini PetscFunctionBegin; 1716658fb44Sstefano_zampini PetscValidHeaderSpecific(ltog,IS_LTOGM_CLASSID,1); 1726658fb44Sstefano_zampini ierr = ISLocalToGlobalMappingCreate(PetscObjectComm((PetscObject)ltog),ltog->bs,ltog->n,ltog->indices,PETSC_COPY_VALUES,nltog);CHKERRQ(ierr); 1736658fb44Sstefano_zampini PetscFunctionReturn(0); 1746658fb44Sstefano_zampini } 1756658fb44Sstefano_zampini 176565245c5SBarry Smith /*@ 177107e9a97SBarry Smith ISLocalToGlobalMappingGetSize - Gets the local size of a local to global mapping 1783b9aefa3SBarry Smith 1793b9aefa3SBarry Smith Not Collective 1803b9aefa3SBarry Smith 1813b9aefa3SBarry Smith Input Parameter: 1823b9aefa3SBarry Smith . ltog - local to global mapping 1833b9aefa3SBarry Smith 1843b9aefa3SBarry Smith Output Parameter: 185107e9a97SBarry Smith . n - the number of entries in the local mapping, ISLocalToGlobalMappingGetIndices() returns an array of this length 1863b9aefa3SBarry Smith 1873b9aefa3SBarry Smith Level: advanced 1883b9aefa3SBarry Smith 189273d9f13SBarry Smith Concepts: mapping^local to global 1903b9aefa3SBarry Smith 1913b9aefa3SBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreate() 1923b9aefa3SBarry Smith @*/ 1937087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingGetSize(ISLocalToGlobalMapping mapping,PetscInt *n) 1943b9aefa3SBarry Smith { 1953b9aefa3SBarry Smith PetscFunctionBegin; 1960700a824SBarry Smith PetscValidHeaderSpecific(mapping,IS_LTOGM_CLASSID,1); 1974482741eSBarry Smith PetscValidIntPointer(n,2); 198107e9a97SBarry Smith *n = mapping->bs*mapping->n; 1993b9aefa3SBarry Smith PetscFunctionReturn(0); 2003b9aefa3SBarry Smith } 2013b9aefa3SBarry Smith 2025a5d4f66SBarry Smith /*@C 2035a5d4f66SBarry Smith ISLocalToGlobalMappingView - View a local to global mapping 2045a5d4f66SBarry Smith 205b9cd556bSLois Curfman McInnes Not Collective 206b9cd556bSLois Curfman McInnes 2075a5d4f66SBarry Smith Input Parameters: 2083b9aefa3SBarry Smith + ltog - local to global mapping 2093b9aefa3SBarry Smith - viewer - viewer 2105a5d4f66SBarry Smith 211a997ad1aSLois Curfman McInnes Level: advanced 212a997ad1aSLois Curfman McInnes 213273d9f13SBarry Smith Concepts: mapping^local to global 2145a5d4f66SBarry Smith 2155a5d4f66SBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreate() 2165a5d4f66SBarry Smith @*/ 2177087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingView(ISLocalToGlobalMapping mapping,PetscViewer viewer) 2185a5d4f66SBarry Smith { 21932dcc486SBarry Smith PetscInt i; 22032dcc486SBarry Smith PetscMPIInt rank; 221ace3abfcSBarry Smith PetscBool iascii; 2226849ba73SBarry Smith PetscErrorCode ierr; 2235a5d4f66SBarry Smith 2245a5d4f66SBarry Smith PetscFunctionBegin; 2250700a824SBarry Smith PetscValidHeaderSpecific(mapping,IS_LTOGM_CLASSID,1); 2263050cee2SBarry Smith if (!viewer) { 227ce94432eSBarry Smith ierr = PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject)mapping),&viewer);CHKERRQ(ierr); 2283050cee2SBarry Smith } 2290700a824SBarry Smith PetscValidHeaderSpecific(viewer,PETSC_VIEWER_CLASSID,2); 2305a5d4f66SBarry Smith 231ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mapping),&rank);CHKERRQ(ierr); 232251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 23332077d6dSBarry Smith if (iascii) { 23498c3331eSBarry Smith ierr = PetscObjectPrintClassNamePrefixType((PetscObject)mapping,viewer);CHKERRQ(ierr); 2351575c14dSBarry Smith ierr = PetscViewerASCIIPushSynchronized(viewer);CHKERRQ(ierr); 2365a5d4f66SBarry Smith for (i=0; i<mapping->n; i++) { 2377904a332SBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] %D %D\n",rank,i,mapping->indices[i]);CHKERRQ(ierr); 2386831982aSBarry Smith } 239b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 2401575c14dSBarry Smith ierr = PetscViewerASCIIPopSynchronized(viewer);CHKERRQ(ierr); 2411575c14dSBarry Smith } 2425a5d4f66SBarry Smith PetscFunctionReturn(0); 2435a5d4f66SBarry Smith } 2445a5d4f66SBarry Smith 2451f428162SBarry Smith /*@ 2462bdab257SBarry Smith ISLocalToGlobalMappingCreateIS - Creates a mapping between a local (0 to n) 2472bdab257SBarry Smith ordering and a global parallel ordering. 2482bdab257SBarry Smith 2490f5bd95cSBarry Smith Not collective 250b9cd556bSLois Curfman McInnes 251a997ad1aSLois Curfman McInnes Input Parameter: 2528c03b21aSDmitry Karpeev . is - index set containing the global numbers for each local number 2532bdab257SBarry Smith 254a997ad1aSLois Curfman McInnes Output Parameter: 2552bdab257SBarry Smith . mapping - new mapping data structure 2562bdab257SBarry Smith 257f0413b6fSBarry Smith Notes: the block size of the IS determines the block size of the mapping 258a997ad1aSLois Curfman McInnes Level: advanced 259a997ad1aSLois Curfman McInnes 260273d9f13SBarry Smith Concepts: mapping^local to global 2612bdab257SBarry Smith 2627e99dc12SLawrence Mitchell .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreate(), ISLocalToGlobalMappingSetFromOptions() 2632bdab257SBarry Smith @*/ 2647087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingCreateIS(IS is,ISLocalToGlobalMapping *mapping) 2652bdab257SBarry Smith { 2666849ba73SBarry Smith PetscErrorCode ierr; 2673bbf0e92SBarry Smith PetscInt n,bs; 2685d0c19d7SBarry Smith const PetscInt *indices; 2692bdab257SBarry Smith MPI_Comm comm; 2703bbf0e92SBarry Smith PetscBool isblock; 2713a40ed3dSBarry Smith 2723a40ed3dSBarry Smith PetscFunctionBegin; 2730700a824SBarry Smith PetscValidHeaderSpecific(is,IS_CLASSID,1); 2744482741eSBarry Smith PetscValidPointer(mapping,2); 2752bdab257SBarry Smith 2762bdab257SBarry Smith ierr = PetscObjectGetComm((PetscObject)is,&comm);CHKERRQ(ierr); 2773b9aefa3SBarry Smith ierr = ISGetLocalSize(is,&n);CHKERRQ(ierr); 2783bbf0e92SBarry Smith ierr = PetscObjectTypeCompare((PetscObject)is,ISBLOCK,&isblock);CHKERRQ(ierr); 2796006e8d2SBarry Smith if (!isblock) { 280f0413b6fSBarry Smith ierr = ISGetIndices(is,&indices);CHKERRQ(ierr); 281f0413b6fSBarry Smith ierr = ISLocalToGlobalMappingCreate(comm,1,n,indices,PETSC_COPY_VALUES,mapping);CHKERRQ(ierr); 2822bdab257SBarry Smith ierr = ISRestoreIndices(is,&indices);CHKERRQ(ierr); 2836006e8d2SBarry Smith } else { 2846006e8d2SBarry Smith ierr = ISGetBlockSize(is,&bs);CHKERRQ(ierr); 285f0413b6fSBarry Smith ierr = ISBlockGetIndices(is,&indices);CHKERRQ(ierr); 28628bc9809SBarry Smith ierr = ISLocalToGlobalMappingCreate(comm,bs,n/bs,indices,PETSC_COPY_VALUES,mapping);CHKERRQ(ierr); 287f0413b6fSBarry Smith ierr = ISBlockRestoreIndices(is,&indices);CHKERRQ(ierr); 2886006e8d2SBarry Smith } 2893a40ed3dSBarry Smith PetscFunctionReturn(0); 2902bdab257SBarry Smith } 2915a5d4f66SBarry Smith 292a4d96a55SJed Brown /*@C 293a4d96a55SJed Brown ISLocalToGlobalMappingCreateSF - Creates a mapping between a local (0 to n) 294a4d96a55SJed Brown ordering and a global parallel ordering. 295a4d96a55SJed Brown 296a4d96a55SJed Brown Collective 297a4d96a55SJed Brown 298a4d96a55SJed Brown Input Parameter: 299a4d96a55SJed Brown + sf - star forest mapping contiguous local indices to (rank, offset) 300a4d96a55SJed Brown - start - first global index on this process 301a4d96a55SJed Brown 302a4d96a55SJed Brown Output Parameter: 303a4d96a55SJed Brown . mapping - new mapping data structure 304a4d96a55SJed Brown 305a4d96a55SJed Brown Level: advanced 306a4d96a55SJed Brown 307a4d96a55SJed Brown Concepts: mapping^local to global 308a4d96a55SJed Brown 3097e99dc12SLawrence Mitchell .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreate(), ISLocalToGlobalMappingCreateIS(), ISLocalToGlobalMappingSetFromOptions() 310a4d96a55SJed Brown @*/ 311a4d96a55SJed Brown PetscErrorCode ISLocalToGlobalMappingCreateSF(PetscSF sf,PetscInt start,ISLocalToGlobalMapping *mapping) 312a4d96a55SJed Brown { 313a4d96a55SJed Brown PetscErrorCode ierr; 314a4d96a55SJed Brown PetscInt i,maxlocal,nroots,nleaves,*globals,*ltog; 315a4d96a55SJed Brown const PetscInt *ilocal; 316a4d96a55SJed Brown MPI_Comm comm; 317a4d96a55SJed Brown 318a4d96a55SJed Brown PetscFunctionBegin; 319a4d96a55SJed Brown PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 320a4d96a55SJed Brown PetscValidPointer(mapping,3); 321a4d96a55SJed Brown 322a4d96a55SJed Brown ierr = PetscObjectGetComm((PetscObject)sf,&comm);CHKERRQ(ierr); 3230298fd71SBarry Smith ierr = PetscSFGetGraph(sf,&nroots,&nleaves,&ilocal,NULL);CHKERRQ(ierr); 324f6e5521dSKarl Rupp if (ilocal) { 325f6e5521dSKarl Rupp for (i=0,maxlocal=0; i<nleaves; i++) maxlocal = PetscMax(maxlocal,ilocal[i]+1); 326f6e5521dSKarl Rupp } 327a4d96a55SJed Brown else maxlocal = nleaves; 328785e854fSJed Brown ierr = PetscMalloc1(nroots,&globals);CHKERRQ(ierr); 329785e854fSJed Brown ierr = PetscMalloc1(maxlocal,<og);CHKERRQ(ierr); 330a4d96a55SJed Brown for (i=0; i<nroots; i++) globals[i] = start + i; 331a4d96a55SJed Brown for (i=0; i<maxlocal; i++) ltog[i] = -1; 332a4d96a55SJed Brown ierr = PetscSFBcastBegin(sf,MPIU_INT,globals,ltog);CHKERRQ(ierr); 333a4d96a55SJed Brown ierr = PetscSFBcastEnd(sf,MPIU_INT,globals,ltog);CHKERRQ(ierr); 334f0413b6fSBarry Smith ierr = ISLocalToGlobalMappingCreate(comm,1,maxlocal,ltog,PETSC_OWN_POINTER,mapping);CHKERRQ(ierr); 335a4d96a55SJed Brown ierr = PetscFree(globals);CHKERRQ(ierr); 336a4d96a55SJed Brown PetscFunctionReturn(0); 337a4d96a55SJed Brown } 338b46b645bSBarry Smith 33963fa5c83Sstefano_zampini /*@ 34063fa5c83Sstefano_zampini ISLocalToGlobalMappingSetBlockSize - Sets the blocksize of the mapping 34163fa5c83Sstefano_zampini 34263fa5c83Sstefano_zampini Not collective 34363fa5c83Sstefano_zampini 34463fa5c83Sstefano_zampini Input Parameters: 34563fa5c83Sstefano_zampini . mapping - mapping data structure 34663fa5c83Sstefano_zampini . bs - the blocksize 34763fa5c83Sstefano_zampini 34863fa5c83Sstefano_zampini Level: advanced 34963fa5c83Sstefano_zampini 35063fa5c83Sstefano_zampini Concepts: mapping^local to global 35163fa5c83Sstefano_zampini 35263fa5c83Sstefano_zampini .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreateIS() 35363fa5c83Sstefano_zampini @*/ 35463fa5c83Sstefano_zampini PetscErrorCode ISLocalToGlobalMappingSetBlockSize(ISLocalToGlobalMapping mapping,PetscInt bs) 35563fa5c83Sstefano_zampini { 356a59f3c4dSstefano_zampini PetscInt *nid; 357a59f3c4dSstefano_zampini const PetscInt *oid; 358a59f3c4dSstefano_zampini PetscInt i,cn,on,obs,nn; 35963fa5c83Sstefano_zampini PetscErrorCode ierr; 36063fa5c83Sstefano_zampini 36163fa5c83Sstefano_zampini PetscFunctionBegin; 36263fa5c83Sstefano_zampini PetscValidHeaderSpecific(mapping,IS_LTOGM_CLASSID,1); 36363fa5c83Sstefano_zampini if (bs < 1) SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Invalid block size %D",bs); 36463fa5c83Sstefano_zampini if (bs == mapping->bs) PetscFunctionReturn(0); 36563fa5c83Sstefano_zampini on = mapping->n; 36663fa5c83Sstefano_zampini obs = mapping->bs; 36763fa5c83Sstefano_zampini oid = mapping->indices; 36863fa5c83Sstefano_zampini nn = (on*obs)/bs; 36963fa5c83Sstefano_zampini if ((on*obs)%bs) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Block size %D is inconsistent with block size %D and number of block indices %D",bs,obs,on); 370a59f3c4dSstefano_zampini 37163fa5c83Sstefano_zampini ierr = PetscMalloc1(nn,&nid);CHKERRQ(ierr); 372a59f3c4dSstefano_zampini ierr = ISLocalToGlobalMappingGetIndices(mapping,&oid);CHKERRQ(ierr); 373a59f3c4dSstefano_zampini for (i=0;i<nn;i++) { 374a59f3c4dSstefano_zampini PetscInt j; 375a59f3c4dSstefano_zampini for (j=0,cn=0;j<bs-1;j++) { 376a59f3c4dSstefano_zampini if (oid[i*bs+j] < 0) { cn++; continue; } 377a59f3c4dSstefano_zampini if (oid[i*bs+j] != oid[i*bs+j+1]-1) SETERRQ4(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Block sizes %D and %D are incompatible with the block indices: non consecutive indices %D %D",bs,obs,oid[i*bs+j],oid[i*bs+j+1]); 378a59f3c4dSstefano_zampini } 379a59f3c4dSstefano_zampini if (oid[i*bs+j] < 0) cn++; 3808b7cb0e6Sstefano_zampini if (cn) { 381a59f3c4dSstefano_zampini if (cn != bs) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_WRONG,"Block sizes %D and %D are incompatible with the block indices: invalid number of negative entries in block %D",bs,obs,cn); 382a59f3c4dSstefano_zampini nid[i] = -1; 3838b7cb0e6Sstefano_zampini } else { 384a59f3c4dSstefano_zampini nid[i] = oid[i*bs]/bs; 38563fa5c83Sstefano_zampini } 38663fa5c83Sstefano_zampini } 387a59f3c4dSstefano_zampini ierr = ISLocalToGlobalMappingRestoreIndices(mapping,&oid);CHKERRQ(ierr); 388a59f3c4dSstefano_zampini 38963fa5c83Sstefano_zampini mapping->n = nn; 39063fa5c83Sstefano_zampini mapping->bs = bs; 39163fa5c83Sstefano_zampini ierr = PetscFree(mapping->indices);CHKERRQ(ierr); 39263fa5c83Sstefano_zampini mapping->indices = nid; 393c9345713Sstefano_zampini mapping->globalstart = 0; 394c9345713Sstefano_zampini mapping->globalend = 0; 395413f72f0SBarry Smith if (mapping->ops->destroy) { 396413f72f0SBarry Smith ierr = (*mapping->ops->destroy)(mapping);CHKERRQ(ierr); 397413f72f0SBarry Smith } 39863fa5c83Sstefano_zampini PetscFunctionReturn(0); 39963fa5c83Sstefano_zampini } 40063fa5c83Sstefano_zampini 40145b6f7e9SBarry Smith /*@ 40245b6f7e9SBarry Smith ISLocalToGlobalMappingGetBlockSize - Gets the blocksize of the mapping 40345b6f7e9SBarry Smith ordering and a global parallel ordering. 40445b6f7e9SBarry Smith 40545b6f7e9SBarry Smith Not Collective 40645b6f7e9SBarry Smith 40745b6f7e9SBarry Smith Input Parameters: 40845b6f7e9SBarry Smith . mapping - mapping data structure 40945b6f7e9SBarry Smith 41045b6f7e9SBarry Smith Output Parameter: 41145b6f7e9SBarry Smith . bs - the blocksize 41245b6f7e9SBarry Smith 41345b6f7e9SBarry Smith Level: advanced 41445b6f7e9SBarry Smith 41545b6f7e9SBarry Smith Concepts: mapping^local to global 41645b6f7e9SBarry Smith 41745b6f7e9SBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreateIS() 41845b6f7e9SBarry Smith @*/ 41945b6f7e9SBarry Smith PetscErrorCode ISLocalToGlobalMappingGetBlockSize(ISLocalToGlobalMapping mapping,PetscInt *bs) 42045b6f7e9SBarry Smith { 42145b6f7e9SBarry Smith PetscFunctionBegin; 422cbc1caf0SMatthew G. Knepley PetscValidHeaderSpecific(mapping,IS_LTOGM_CLASSID,1); 42345b6f7e9SBarry Smith *bs = mapping->bs; 42445b6f7e9SBarry Smith PetscFunctionReturn(0); 42545b6f7e9SBarry Smith } 42645b6f7e9SBarry Smith 427ba5bb76aSSatish Balay /*@ 42890f02eecSBarry Smith ISLocalToGlobalMappingCreate - Creates a mapping between a local (0 to n) 42990f02eecSBarry Smith ordering and a global parallel ordering. 4302362add9SBarry Smith 43189d82c54SBarry Smith Not Collective, but communicator may have more than one process 432b9cd556bSLois Curfman McInnes 4332362add9SBarry Smith Input Parameters: 43489d82c54SBarry Smith + comm - MPI communicator 435f0413b6fSBarry Smith . bs - the block size 43628bc9809SBarry Smith . n - the number of local elements divided by the block size, or equivalently the number of block indices 43728bc9809SBarry Smith . indices - the global index for each local element, these do not need to be in increasing order (sorted), these values should not be scaled (i.e. multiplied) by the blocksize bs 438d5ad8652SBarry Smith - mode - see PetscCopyMode 4392362add9SBarry Smith 440a997ad1aSLois Curfman McInnes Output Parameter: 44190f02eecSBarry Smith . mapping - new mapping data structure 4422362add9SBarry Smith 443f0413b6fSBarry Smith Notes: There is one integer value in indices per block and it represents the actual indices bs*idx + j, where j=0,..,bs-1 444413f72f0SBarry Smith 445413f72f0SBarry Smith For "small" problems when using ISGlobalToMappingApply() and ISGlobalToMappingApplyBlock(), the ISLocalToGlobalMappingType of ISLOCALTOGLOBALMAPPINGBASIC will be used; 446413f72f0SBarry Smith this uses more memory but is faster; this approach is not scalable for extremely large mappings. For large problems ISLOCALTOGLOBALMAPPINGHASH is used, this is scalable. 447413f72f0SBarry Smith Use ISLocalToGlobalMappingSetType() or call ISLocalToGlobalMappingSetFromOptions() with the option -islocaltoglobalmapping_type <basic,hash> to control which is used. 448413f72f0SBarry Smith 449a997ad1aSLois Curfman McInnes Level: advanced 450a997ad1aSLois Curfman McInnes 451273d9f13SBarry Smith Concepts: mapping^local to global 4522362add9SBarry Smith 453413f72f0SBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreateIS(), ISLocalToGlobalMappingSetFromOptions(), ISLOCALTOGLOBALMAPPINGBASIC, ISLOCALTOGLOBALMAPPINGHASH 454413f72f0SBarry Smith ISLocalToGlobalMappingSetType(), ISLocalToGlobalMappingType 4552362add9SBarry Smith @*/ 45660c7cefcSBarry Smith PetscErrorCode ISLocalToGlobalMappingCreate(MPI_Comm comm,PetscInt bs,PetscInt n,const PetscInt indices[],PetscCopyMode mode,ISLocalToGlobalMapping *mapping) 4572362add9SBarry Smith { 4586849ba73SBarry Smith PetscErrorCode ierr; 45932dcc486SBarry Smith PetscInt *in; 460b46b645bSBarry Smith 461b46b645bSBarry Smith PetscFunctionBegin; 46273911063SBarry Smith if (n) PetscValidIntPointer(indices,3); 4634482741eSBarry Smith PetscValidPointer(mapping,4); 464b46b645bSBarry Smith 4650298fd71SBarry Smith *mapping = NULL; 466607a6623SBarry Smith ierr = ISInitializePackage();CHKERRQ(ierr); 4672362add9SBarry Smith 46873107ff1SLisandro Dalcin ierr = PetscHeaderCreate(*mapping,IS_LTOGM_CLASSID,"ISLocalToGlobalMapping","Local to global mapping","IS", 46960c7cefcSBarry Smith comm,ISLocalToGlobalMappingDestroy,ISLocalToGlobalMappingView);CHKERRQ(ierr); 470d4bb536fSBarry Smith (*mapping)->n = n; 471f0413b6fSBarry Smith (*mapping)->bs = bs; 472268a049cSStefano Zampini (*mapping)->info_cached = PETSC_FALSE; 473268a049cSStefano Zampini (*mapping)->info_free = PETSC_FALSE; 474268a049cSStefano Zampini (*mapping)->info_procs = NULL; 475268a049cSStefano Zampini (*mapping)->info_numprocs = NULL; 476268a049cSStefano Zampini (*mapping)->info_indices = NULL; 477413f72f0SBarry Smith 478413f72f0SBarry Smith (*mapping)->ops->globaltolocalmappingapply = NULL; 479413f72f0SBarry Smith (*mapping)->ops->globaltolocalmappingapplyblock = NULL; 480413f72f0SBarry Smith (*mapping)->ops->destroy = NULL; 481d5ad8652SBarry Smith if (mode == PETSC_COPY_VALUES) { 482785e854fSJed Brown ierr = PetscMalloc1(n,&in);CHKERRQ(ierr); 483d5ad8652SBarry Smith ierr = PetscMemcpy(in,indices,n*sizeof(PetscInt));CHKERRQ(ierr); 484d5ad8652SBarry Smith (*mapping)->indices = in; 4856389a1a1SBarry Smith ierr = PetscLogObjectMemory((PetscObject)*mapping,n*sizeof(PetscInt));CHKERRQ(ierr); 4866389a1a1SBarry Smith } else if (mode == PETSC_OWN_POINTER) { 4876389a1a1SBarry Smith (*mapping)->indices = (PetscInt*)indices; 4886389a1a1SBarry Smith ierr = PetscLogObjectMemory((PetscObject)*mapping,n*sizeof(PetscInt));CHKERRQ(ierr); 4896389a1a1SBarry Smith } 49060c7cefcSBarry Smith else SETERRQ(comm,PETSC_ERR_SUP,"Cannot currently use PETSC_USE_POINTER"); 4913a40ed3dSBarry Smith PetscFunctionReturn(0); 4922362add9SBarry Smith } 4932362add9SBarry Smith 494413f72f0SBarry Smith PetscFunctionList ISLocalToGlobalMappingList = NULL; 495413f72f0SBarry Smith 496413f72f0SBarry Smith 49790f02eecSBarry Smith /*@ 4987e99dc12SLawrence Mitchell ISLocalToGlobalMappingSetFromOptions - Set mapping options from the options database. 4997e99dc12SLawrence Mitchell 5007e99dc12SLawrence Mitchell Not collective 5017e99dc12SLawrence Mitchell 5027e99dc12SLawrence Mitchell Input Parameters: 5037e99dc12SLawrence Mitchell . mapping - mapping data structure 5047e99dc12SLawrence Mitchell 5057e99dc12SLawrence Mitchell Level: advanced 5067e99dc12SLawrence Mitchell 5077e99dc12SLawrence Mitchell @*/ 5087e99dc12SLawrence Mitchell PetscErrorCode ISLocalToGlobalMappingSetFromOptions(ISLocalToGlobalMapping mapping) 5097e99dc12SLawrence Mitchell { 5107e99dc12SLawrence Mitchell PetscErrorCode ierr; 511413f72f0SBarry Smith char type[256]; 512413f72f0SBarry Smith ISLocalToGlobalMappingType defaulttype = "Not set"; 5137e99dc12SLawrence Mitchell PetscBool flg; 5147e99dc12SLawrence Mitchell 5157e99dc12SLawrence Mitchell PetscFunctionBegin; 5167e99dc12SLawrence Mitchell PetscValidHeaderSpecific(mapping,IS_LTOGM_CLASSID,1); 517413f72f0SBarry Smith ierr = ISLocalToGlobalMappingRegisterAll();CHKERRQ(ierr); 5187e99dc12SLawrence Mitchell ierr = PetscObjectOptionsBegin((PetscObject)mapping);CHKERRQ(ierr); 519413f72f0SBarry Smith ierr = PetscOptionsFList("-islocaltoglobalmapping_type","ISLocalToGlobalMapping method","ISLocalToGlobalMappingSetType",ISLocalToGlobalMappingList,(char*)(((PetscObject)mapping)->type_name) ? ((PetscObject)mapping)->type_name : defaulttype,type,256,&flg);CHKERRQ(ierr); 520413f72f0SBarry Smith if (flg) { 521413f72f0SBarry Smith ierr = ISLocalToGlobalMappingSetType(mapping,type);CHKERRQ(ierr); 522413f72f0SBarry Smith } 5237e99dc12SLawrence Mitchell ierr = PetscOptionsEnd();CHKERRQ(ierr); 5247e99dc12SLawrence Mitchell PetscFunctionReturn(0); 5257e99dc12SLawrence Mitchell } 5267e99dc12SLawrence Mitchell 5277e99dc12SLawrence Mitchell /*@ 52890f02eecSBarry Smith ISLocalToGlobalMappingDestroy - Destroys a mapping between a local (0 to n) 52990f02eecSBarry Smith ordering and a global parallel ordering. 53090f02eecSBarry Smith 5310f5bd95cSBarry Smith Note Collective 532b9cd556bSLois Curfman McInnes 53390f02eecSBarry Smith Input Parameters: 53490f02eecSBarry Smith . mapping - mapping data structure 53590f02eecSBarry Smith 536a997ad1aSLois Curfman McInnes Level: advanced 537a997ad1aSLois Curfman McInnes 5383acfe500SLois Curfman McInnes .seealso: ISLocalToGlobalMappingCreate() 53990f02eecSBarry Smith @*/ 5406bf464f9SBarry Smith PetscErrorCode ISLocalToGlobalMappingDestroy(ISLocalToGlobalMapping *mapping) 54190f02eecSBarry Smith { 542dfbe8321SBarry Smith PetscErrorCode ierr; 5435fd66863SKarl Rupp 5443a40ed3dSBarry Smith PetscFunctionBegin; 5456bf464f9SBarry Smith if (!*mapping) PetscFunctionReturn(0); 5466bf464f9SBarry Smith PetscValidHeaderSpecific((*mapping),IS_LTOGM_CLASSID,1); 547997056adSBarry Smith if (--((PetscObject)(*mapping))->refct > 0) {*mapping = 0;PetscFunctionReturn(0);} 5486bf464f9SBarry Smith ierr = PetscFree((*mapping)->indices);CHKERRQ(ierr); 549268a049cSStefano Zampini ierr = PetscFree((*mapping)->info_procs);CHKERRQ(ierr); 550268a049cSStefano Zampini ierr = PetscFree((*mapping)->info_numprocs);CHKERRQ(ierr); 551268a049cSStefano Zampini if ((*mapping)->info_indices) { 552268a049cSStefano Zampini PetscInt i; 553268a049cSStefano Zampini 554268a049cSStefano Zampini ierr = PetscFree(((*mapping)->info_indices)[0]);CHKERRQ(ierr); 555268a049cSStefano Zampini for (i=1; i<(*mapping)->info_nproc; i++) { 556268a049cSStefano Zampini ierr = PetscFree(((*mapping)->info_indices)[i]);CHKERRQ(ierr); 557268a049cSStefano Zampini } 558268a049cSStefano Zampini ierr = PetscFree((*mapping)->info_indices);CHKERRQ(ierr); 559268a049cSStefano Zampini } 560413f72f0SBarry Smith if ((*mapping)->ops->destroy) { 561413f72f0SBarry Smith ierr = (*(*mapping)->ops->destroy)(*mapping);CHKERRQ(ierr); 562413f72f0SBarry Smith } 563d38fa0fbSBarry Smith ierr = PetscHeaderDestroy(mapping);CHKERRQ(ierr); 564992144d0SBarry Smith *mapping = 0; 5653a40ed3dSBarry Smith PetscFunctionReturn(0); 56690f02eecSBarry Smith } 56790f02eecSBarry Smith 56890f02eecSBarry Smith /*@ 5693acfe500SLois Curfman McInnes ISLocalToGlobalMappingApplyIS - Creates from an IS in the local numbering 5703acfe500SLois Curfman McInnes a new index set using the global numbering defined in an ISLocalToGlobalMapping 5713acfe500SLois Curfman McInnes context. 57290f02eecSBarry Smith 573b9cd556bSLois Curfman McInnes Not collective 574b9cd556bSLois Curfman McInnes 57590f02eecSBarry Smith Input Parameters: 576b9cd556bSLois Curfman McInnes + mapping - mapping between local and global numbering 577b9cd556bSLois Curfman McInnes - is - index set in local numbering 57890f02eecSBarry Smith 57990f02eecSBarry Smith Output Parameters: 58090f02eecSBarry Smith . newis - index set in global numbering 58190f02eecSBarry Smith 582a997ad1aSLois Curfman McInnes Level: advanced 583a997ad1aSLois Curfman McInnes 584273d9f13SBarry Smith Concepts: mapping^local to global 5853acfe500SLois Curfman McInnes 58690f02eecSBarry Smith .seealso: ISLocalToGlobalMappingApply(), ISLocalToGlobalMappingCreate(), 587d4bb536fSBarry Smith ISLocalToGlobalMappingDestroy(), ISGlobalToLocalMappingApply() 58890f02eecSBarry Smith @*/ 5897087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingApplyIS(ISLocalToGlobalMapping mapping,IS is,IS *newis) 59090f02eecSBarry Smith { 5916849ba73SBarry Smith PetscErrorCode ierr; 592e24637baSBarry Smith PetscInt n,*idxout; 5935d0c19d7SBarry Smith const PetscInt *idxin; 5943a40ed3dSBarry Smith 5953a40ed3dSBarry Smith PetscFunctionBegin; 5960700a824SBarry Smith PetscValidHeaderSpecific(mapping,IS_LTOGM_CLASSID,1); 5970700a824SBarry Smith PetscValidHeaderSpecific(is,IS_CLASSID,2); 5984482741eSBarry Smith PetscValidPointer(newis,3); 59990f02eecSBarry Smith 6003b9aefa3SBarry Smith ierr = ISGetLocalSize(is,&n);CHKERRQ(ierr); 60190f02eecSBarry Smith ierr = ISGetIndices(is,&idxin);CHKERRQ(ierr); 602785e854fSJed Brown ierr = PetscMalloc1(n,&idxout);CHKERRQ(ierr); 603e24637baSBarry Smith ierr = ISLocalToGlobalMappingApply(mapping,n,idxin,idxout);CHKERRQ(ierr); 6043b9aefa3SBarry Smith ierr = ISRestoreIndices(is,&idxin);CHKERRQ(ierr); 605543f3098SMatthew G. Knepley ierr = ISCreateGeneral(PetscObjectComm((PetscObject)is),n,idxout,PETSC_OWN_POINTER,newis);CHKERRQ(ierr); 6063a40ed3dSBarry Smith PetscFunctionReturn(0); 60790f02eecSBarry Smith } 60890f02eecSBarry Smith 609b89cb25eSSatish Balay /*@ 6103acfe500SLois Curfman McInnes ISLocalToGlobalMappingApply - Takes a list of integers in a local numbering 6113acfe500SLois Curfman McInnes and converts them to the global numbering. 61290f02eecSBarry Smith 613b9cd556bSLois Curfman McInnes Not collective 614b9cd556bSLois Curfman McInnes 615bb25748dSBarry Smith Input Parameters: 616b9cd556bSLois Curfman McInnes + mapping - the local to global mapping context 617bb25748dSBarry Smith . N - number of integers 618b9cd556bSLois Curfman McInnes - in - input indices in local numbering 619bb25748dSBarry Smith 620bb25748dSBarry Smith Output Parameter: 621bb25748dSBarry Smith . out - indices in global numbering 622bb25748dSBarry Smith 623b9cd556bSLois Curfman McInnes Notes: 624b9cd556bSLois Curfman McInnes The in and out array parameters may be identical. 625d4bb536fSBarry Smith 626a997ad1aSLois Curfman McInnes Level: advanced 627a997ad1aSLois Curfman McInnes 62845b6f7e9SBarry Smith .seealso: ISLocalToGlobalMappingApplyBlock(), ISLocalToGlobalMappingCreate(),ISLocalToGlobalMappingDestroy(), 6290752156aSBarry Smith ISLocalToGlobalMappingApplyIS(),AOCreateBasic(),AOApplicationToPetsc(), 630d4bb536fSBarry Smith AOPetscToApplication(), ISGlobalToLocalMappingApply() 631bb25748dSBarry Smith 632273d9f13SBarry Smith Concepts: mapping^local to global 633afcb2eb5SJed Brown @*/ 634afcb2eb5SJed Brown PetscErrorCode ISLocalToGlobalMappingApply(ISLocalToGlobalMapping mapping,PetscInt N,const PetscInt in[],PetscInt out[]) 635afcb2eb5SJed Brown { 636cbc1caf0SMatthew G. Knepley PetscInt i,bs,Nmax; 63745b6f7e9SBarry Smith 63845b6f7e9SBarry Smith PetscFunctionBegin; 639cbc1caf0SMatthew G. Knepley PetscValidHeaderSpecific(mapping,IS_LTOGM_CLASSID,1); 640cbc1caf0SMatthew G. Knepley bs = mapping->bs; 641cbc1caf0SMatthew G. Knepley Nmax = bs*mapping->n; 64245b6f7e9SBarry Smith if (bs == 1) { 643cbc1caf0SMatthew G. Knepley const PetscInt *idx = mapping->indices; 64445b6f7e9SBarry Smith for (i=0; i<N; i++) { 64545b6f7e9SBarry Smith if (in[i] < 0) { 64645b6f7e9SBarry Smith out[i] = in[i]; 64745b6f7e9SBarry Smith continue; 64845b6f7e9SBarry Smith } 649e24637baSBarry Smith if (in[i] >= Nmax) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local index %D too large %D (max) at %D",in[i],Nmax-1,i); 65045b6f7e9SBarry Smith out[i] = idx[in[i]]; 65145b6f7e9SBarry Smith } 65245b6f7e9SBarry Smith } else { 653cbc1caf0SMatthew G. Knepley const PetscInt *idx = mapping->indices; 65445b6f7e9SBarry Smith for (i=0; i<N; i++) { 65545b6f7e9SBarry Smith if (in[i] < 0) { 65645b6f7e9SBarry Smith out[i] = in[i]; 65745b6f7e9SBarry Smith continue; 65845b6f7e9SBarry Smith } 659e24637baSBarry Smith if (in[i] >= Nmax) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local index %D too large %D (max) at %D",in[i],Nmax-1,i); 66045b6f7e9SBarry Smith out[i] = idx[in[i]/bs]*bs + (in[i] % bs); 66145b6f7e9SBarry Smith } 66245b6f7e9SBarry Smith } 66345b6f7e9SBarry Smith PetscFunctionReturn(0); 66445b6f7e9SBarry Smith } 66545b6f7e9SBarry Smith 66645b6f7e9SBarry Smith /*@ 6676006e8d2SBarry Smith ISLocalToGlobalMappingApplyBlock - Takes a list of integers in a local block numbering and converts them to the global block numbering 66845b6f7e9SBarry Smith 66945b6f7e9SBarry Smith Not collective 67045b6f7e9SBarry Smith 67145b6f7e9SBarry Smith Input Parameters: 67245b6f7e9SBarry Smith + mapping - the local to global mapping context 67345b6f7e9SBarry Smith . N - number of integers 6746006e8d2SBarry Smith - in - input indices in local block numbering 67545b6f7e9SBarry Smith 67645b6f7e9SBarry Smith Output Parameter: 6776006e8d2SBarry Smith . out - indices in global block numbering 67845b6f7e9SBarry Smith 67945b6f7e9SBarry Smith Notes: 68045b6f7e9SBarry Smith The in and out array parameters may be identical. 68145b6f7e9SBarry Smith 6826006e8d2SBarry Smith Example: 6836006e8d2SBarry Smith If the index values are {0,1,6,7} set with a call to ISLocalToGlobalMappingCreate(PETSC_COMM_SELF,2,2,{0,3}) then the mapping applied to 0 6846006e8d2SBarry Smith (the first block) would produce 0 and the mapping applied to 1 (the second block) would produce 3. 6856006e8d2SBarry Smith 68645b6f7e9SBarry Smith Level: advanced 68745b6f7e9SBarry Smith 68845b6f7e9SBarry Smith .seealso: ISLocalToGlobalMappingApply(), ISLocalToGlobalMappingCreate(),ISLocalToGlobalMappingDestroy(), 68945b6f7e9SBarry Smith ISLocalToGlobalMappingApplyIS(),AOCreateBasic(),AOApplicationToPetsc(), 69045b6f7e9SBarry Smith AOPetscToApplication(), ISGlobalToLocalMappingApply() 69145b6f7e9SBarry Smith 69245b6f7e9SBarry Smith Concepts: mapping^local to global 69345b6f7e9SBarry Smith @*/ 69445b6f7e9SBarry Smith PetscErrorCode ISLocalToGlobalMappingApplyBlock(ISLocalToGlobalMapping mapping,PetscInt N,const PetscInt in[],PetscInt out[]) 69545b6f7e9SBarry Smith { 696cbc1caf0SMatthew G. Knepley 697cbc1caf0SMatthew G. Knepley PetscFunctionBegin; 698cbc1caf0SMatthew G. Knepley PetscValidHeaderSpecific(mapping,IS_LTOGM_CLASSID,1); 699cbc1caf0SMatthew G. Knepley { 700afcb2eb5SJed Brown PetscInt i,Nmax = mapping->n; 701afcb2eb5SJed Brown const PetscInt *idx = mapping->indices; 702d4bb536fSBarry Smith 703afcb2eb5SJed Brown for (i=0; i<N; i++) { 704afcb2eb5SJed Brown if (in[i] < 0) { 705afcb2eb5SJed Brown out[i] = in[i]; 706afcb2eb5SJed Brown continue; 707afcb2eb5SJed Brown } 708e24637baSBarry Smith if (in[i] >= Nmax) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local block index %D too large %D (max) at %D",in[i],Nmax-1,i); 709afcb2eb5SJed Brown out[i] = idx[in[i]]; 710afcb2eb5SJed Brown } 711cbc1caf0SMatthew G. Knepley } 712afcb2eb5SJed Brown PetscFunctionReturn(0); 713afcb2eb5SJed Brown } 714d4bb536fSBarry Smith 7157e99dc12SLawrence Mitchell /*@ 716a997ad1aSLois Curfman McInnes ISGlobalToLocalMappingApply - Provides the local numbering for a list of integers 717a997ad1aSLois Curfman McInnes specified with a global numbering. 718d4bb536fSBarry Smith 719b9cd556bSLois Curfman McInnes Not collective 720b9cd556bSLois Curfman McInnes 721d4bb536fSBarry Smith Input Parameters: 722b9cd556bSLois Curfman McInnes + mapping - mapping between local and global numbering 723d4bb536fSBarry Smith . type - IS_GTOLM_MASK - replaces global indices with no local value with -1 724d4bb536fSBarry Smith IS_GTOLM_DROP - drops the indices with no local value from the output list 725d4bb536fSBarry Smith . n - number of global indices to map 726b9cd556bSLois Curfman McInnes - idx - global indices to map 727d4bb536fSBarry Smith 728d4bb536fSBarry Smith Output Parameters: 729b9cd556bSLois Curfman McInnes + nout - number of indices in output array (if type == IS_GTOLM_MASK then nout = n) 730b9cd556bSLois Curfman McInnes - idxout - local index of each global index, one must pass in an array long enough 731e182c471SBarry Smith to hold all the indices. You can call ISGlobalToLocalMappingApply() with 7320298fd71SBarry Smith idxout == NULL to determine the required length (returned in nout) 733e182c471SBarry Smith and then allocate the required space and call ISGlobalToLocalMappingApply() 734e182c471SBarry Smith a second time to set the values. 735d4bb536fSBarry Smith 736b9cd556bSLois Curfman McInnes Notes: 7370298fd71SBarry Smith Either nout or idxout may be NULL. idx and idxout may be identical. 738d4bb536fSBarry Smith 739413f72f0SBarry Smith For "small" problems when using ISGlobalToMappingApply() and ISGlobalToMappingApplyBlock(), the ISLocalToGlobalMappingType of ISLOCALTOGLOBALMAPPINGBASIC will be used; 740413f72f0SBarry Smith this uses more memory but is faster; this approach is not scalable for extremely large mappings. For large problems ISLOCALTOGLOBALMAPPINGHASH is used, this is scalable. 741413f72f0SBarry Smith Use ISLocalToGlobalMappingSetType() or call ISLocalToGlobalMappingSetFromOptions() with the option -islocaltoglobalmapping_type <basic,hash> to control which is used. 7420f5bd95cSBarry Smith 743a997ad1aSLois Curfman McInnes Level: advanced 744a997ad1aSLois Curfman McInnes 74532fd6b96SBarry Smith Developer Note: The manual page states that idx and idxout may be identical but the calling 74632fd6b96SBarry Smith sequence declares idx as const so it cannot be the same as idxout. 74732fd6b96SBarry Smith 748273d9f13SBarry Smith Concepts: mapping^global to local 749d4bb536fSBarry Smith 7509d90f715SBarry Smith .seealso: ISLocalToGlobalMappingApply(), ISGlobalToLocalMappingApplyBlock(), ISLocalToGlobalMappingCreate(), 751413f72f0SBarry Smith ISLocalToGlobalMappingDestroy() 752d4bb536fSBarry Smith @*/ 753413f72f0SBarry Smith PetscErrorCode ISGlobalToLocalMappingApply(ISLocalToGlobalMapping mapping,ISGlobalToLocalMappingMode type,PetscInt n,const PetscInt idx[],PetscInt *nout,PetscInt idxout[]) 754d4bb536fSBarry Smith { 7559d90f715SBarry Smith PetscErrorCode ierr; 7569d90f715SBarry Smith 7579d90f715SBarry Smith PetscFunctionBegin; 7589d90f715SBarry Smith PetscValidHeaderSpecific(mapping,IS_LTOGM_CLASSID,1); 759413f72f0SBarry Smith if (!mapping->data) { 760413f72f0SBarry Smith ierr = ISGlobalToLocalMappingSetUp(mapping);CHKERRQ(ierr); 7619d90f715SBarry Smith } 762413f72f0SBarry Smith ierr = (*mapping->ops->globaltolocalmappingapply)(mapping,type,n,idx,nout,idxout);CHKERRQ(ierr); 7639d90f715SBarry Smith PetscFunctionReturn(0); 7649d90f715SBarry Smith } 7659d90f715SBarry Smith 766d4fe737eSStefano Zampini /*@ 767d4fe737eSStefano Zampini ISGlobalToLocalMappingApplyIS - Creates from an IS in the global numbering 768d4fe737eSStefano Zampini a new index set using the local numbering defined in an ISLocalToGlobalMapping 769d4fe737eSStefano Zampini context. 770d4fe737eSStefano Zampini 771d4fe737eSStefano Zampini Not collective 772d4fe737eSStefano Zampini 773d4fe737eSStefano Zampini Input Parameters: 774d4fe737eSStefano Zampini + mapping - mapping between local and global numbering 775d4fe737eSStefano Zampini - is - index set in global numbering 776d4fe737eSStefano Zampini 777d4fe737eSStefano Zampini Output Parameters: 778d4fe737eSStefano Zampini . newis - index set in local numbering 779d4fe737eSStefano Zampini 780d4fe737eSStefano Zampini Level: advanced 781d4fe737eSStefano Zampini 782d4fe737eSStefano Zampini Concepts: mapping^local to global 783d4fe737eSStefano Zampini 784d4fe737eSStefano Zampini .seealso: ISGlobalToLocalMappingApply(), ISLocalToGlobalMappingCreate(), 785d4fe737eSStefano Zampini ISLocalToGlobalMappingDestroy() 786d4fe737eSStefano Zampini @*/ 787413f72f0SBarry Smith PetscErrorCode ISGlobalToLocalMappingApplyIS(ISLocalToGlobalMapping mapping,ISGlobalToLocalMappingMode type, IS is,IS *newis) 788d4fe737eSStefano Zampini { 789d4fe737eSStefano Zampini PetscErrorCode ierr; 790d4fe737eSStefano Zampini PetscInt n,nout,*idxout; 791d4fe737eSStefano Zampini const PetscInt *idxin; 792d4fe737eSStefano Zampini 793d4fe737eSStefano Zampini PetscFunctionBegin; 794d4fe737eSStefano Zampini PetscValidHeaderSpecific(mapping,IS_LTOGM_CLASSID,1); 795d4fe737eSStefano Zampini PetscValidHeaderSpecific(is,IS_CLASSID,3); 796d4fe737eSStefano Zampini PetscValidPointer(newis,4); 797d4fe737eSStefano Zampini 798d4fe737eSStefano Zampini ierr = ISGetLocalSize(is,&n);CHKERRQ(ierr); 799d4fe737eSStefano Zampini ierr = ISGetIndices(is,&idxin);CHKERRQ(ierr); 800d4fe737eSStefano Zampini if (type == IS_GTOLM_MASK) { 801d4fe737eSStefano Zampini ierr = PetscMalloc1(n,&idxout);CHKERRQ(ierr); 802d4fe737eSStefano Zampini } else { 803d4fe737eSStefano Zampini ierr = ISGlobalToLocalMappingApply(mapping,type,n,idxin,&nout,NULL);CHKERRQ(ierr); 804d4fe737eSStefano Zampini ierr = PetscMalloc1(nout,&idxout);CHKERRQ(ierr); 805d4fe737eSStefano Zampini } 806d4fe737eSStefano Zampini ierr = ISGlobalToLocalMappingApply(mapping,type,n,idxin,&nout,idxout);CHKERRQ(ierr); 807d4fe737eSStefano Zampini ierr = ISRestoreIndices(is,&idxin);CHKERRQ(ierr); 808d4fe737eSStefano Zampini ierr = ISCreateGeneral(PetscObjectComm((PetscObject)is),nout,idxout,PETSC_OWN_POINTER,newis);CHKERRQ(ierr); 809d4fe737eSStefano Zampini PetscFunctionReturn(0); 810d4fe737eSStefano Zampini } 811d4fe737eSStefano Zampini 8129d90f715SBarry Smith /*@ 8139d90f715SBarry Smith ISGlobalToLocalMappingApplyBlock - Provides the local block numbering for a list of integers 8149d90f715SBarry Smith specified with a block global numbering. 8159d90f715SBarry Smith 8169d90f715SBarry Smith Not collective 8179d90f715SBarry Smith 8189d90f715SBarry Smith Input Parameters: 8199d90f715SBarry Smith + mapping - mapping between local and global numbering 8209d90f715SBarry Smith . type - IS_GTOLM_MASK - replaces global indices with no local value with -1 8219d90f715SBarry Smith IS_GTOLM_DROP - drops the indices with no local value from the output list 8229d90f715SBarry Smith . n - number of global indices to map 8239d90f715SBarry Smith - idx - global indices to map 8249d90f715SBarry Smith 8259d90f715SBarry Smith Output Parameters: 8269d90f715SBarry Smith + nout - number of indices in output array (if type == IS_GTOLM_MASK then nout = n) 8279d90f715SBarry Smith - idxout - local index of each global index, one must pass in an array long enough 8289d90f715SBarry Smith to hold all the indices. You can call ISGlobalToLocalMappingApplyBlock() with 8299d90f715SBarry Smith idxout == NULL to determine the required length (returned in nout) 8309d90f715SBarry Smith and then allocate the required space and call ISGlobalToLocalMappingApplyBlock() 8319d90f715SBarry Smith a second time to set the values. 8329d90f715SBarry Smith 8339d90f715SBarry Smith Notes: 8349d90f715SBarry Smith Either nout or idxout may be NULL. idx and idxout may be identical. 8359d90f715SBarry Smith 836413f72f0SBarry Smith For "small" problems when using ISGlobalToMappingApply() and ISGlobalToMappingApplyBlock(), the ISLocalToGlobalMappingType of ISLOCALTOGLOBALMAPPINGBASIC will be used; 837413f72f0SBarry Smith this uses more memory but is faster; this approach is not scalable for extremely large mappings. For large problems ISLOCALTOGLOBALMAPPINGHASH is used, this is scalable. 838413f72f0SBarry Smith Use ISLocalToGlobalMappingSetType() or call ISLocalToGlobalMappingSetFromOptions() with the option -islocaltoglobalmapping_type <basic,hash> to control which is used. 8399d90f715SBarry Smith 8409d90f715SBarry Smith Level: advanced 8419d90f715SBarry Smith 8429d90f715SBarry Smith Developer Note: The manual page states that idx and idxout may be identical but the calling 8439d90f715SBarry Smith sequence declares idx as const so it cannot be the same as idxout. 8449d90f715SBarry Smith 8459d90f715SBarry Smith Concepts: mapping^global to local 8469d90f715SBarry Smith 8479d90f715SBarry Smith .seealso: ISLocalToGlobalMappingApply(), ISGlobalToLocalMappingApply(), ISLocalToGlobalMappingCreate(), 848413f72f0SBarry Smith ISLocalToGlobalMappingDestroy() 8499d90f715SBarry Smith @*/ 850413f72f0SBarry Smith PetscErrorCode ISGlobalToLocalMappingApplyBlock(ISLocalToGlobalMapping mapping,ISGlobalToLocalMappingMode type, 8519d90f715SBarry Smith PetscInt n,const PetscInt idx[],PetscInt *nout,PetscInt idxout[]) 8529d90f715SBarry Smith { 8536849ba73SBarry Smith PetscErrorCode ierr; 854d4bb536fSBarry Smith 8553a40ed3dSBarry Smith PetscFunctionBegin; 8560700a824SBarry Smith PetscValidHeaderSpecific(mapping,IS_LTOGM_CLASSID,1); 857413f72f0SBarry Smith if (!mapping->data) { 858413f72f0SBarry Smith ierr = ISGlobalToLocalMappingSetUp(mapping);CHKERRQ(ierr); 859d4bb536fSBarry Smith } 860413f72f0SBarry Smith ierr = (*mapping->ops->globaltolocalmappingapplyblock)(mapping,type,n,idx,nout,idxout);CHKERRQ(ierr); 8613a40ed3dSBarry Smith PetscFunctionReturn(0); 862d4bb536fSBarry Smith } 86390f02eecSBarry Smith 864413f72f0SBarry Smith 86589d82c54SBarry Smith /*@C 8666a818285SBarry Smith ISLocalToGlobalMappingGetBlockInfo - Gets the neighbor information for each processor and 86789d82c54SBarry Smith each index shared by more than one processor 86889d82c54SBarry Smith 86989d82c54SBarry Smith Collective on ISLocalToGlobalMapping 87089d82c54SBarry Smith 87189d82c54SBarry Smith Input Parameters: 87289d82c54SBarry Smith . mapping - the mapping from local to global indexing 87389d82c54SBarry Smith 87489d82c54SBarry Smith Output Parameter: 87589d82c54SBarry Smith + nproc - number of processors that are connected to this one 87689d82c54SBarry Smith . proc - neighboring processors 87707b52d57SBarry Smith . numproc - number of indices for each subdomain (processor) 8783463a7baSJed Brown - indices - indices of nodes (in local numbering) shared with neighbors (sorted by global numbering) 87989d82c54SBarry Smith 88089d82c54SBarry Smith Level: advanced 88189d82c54SBarry Smith 882273d9f13SBarry Smith Concepts: mapping^local to global 88389d82c54SBarry Smith 8842cfcea29SBarry Smith Fortran Usage: 8852cfcea29SBarry Smith $ ISLocalToGlobalMpngGetInfoSize(ISLocalToGlobalMapping,PetscInt nproc,PetscInt numprocmax,ierr) followed by 8862cfcea29SBarry Smith $ ISLocalToGlobalMappingGetInfo(ISLocalToGlobalMapping,PetscInt nproc, PetscInt procs[nproc],PetscInt numprocs[nproc], 8872cfcea29SBarry Smith PetscInt indices[nproc][numprocmax],ierr) 8882cfcea29SBarry Smith There is no ISLocalToGlobalMappingRestoreInfo() in Fortran. You must make sure that procs[], numprocs[] and 8892cfcea29SBarry Smith indices[][] are large enough arrays, either by allocating them dynamically or defining static ones large enough. 8902cfcea29SBarry Smith 8912cfcea29SBarry Smith 89207b52d57SBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreateIS(), ISLocalToGlobalMappingCreate(), 89307b52d57SBarry Smith ISLocalToGlobalMappingRestoreInfo() 89489d82c54SBarry Smith @*/ 8956a818285SBarry Smith PetscErrorCode ISLocalToGlobalMappingGetBlockInfo(ISLocalToGlobalMapping mapping,PetscInt *nproc,PetscInt *procs[],PetscInt *numprocs[],PetscInt **indices[]) 89689d82c54SBarry Smith { 8976849ba73SBarry Smith PetscErrorCode ierr; 898268a049cSStefano Zampini 899268a049cSStefano Zampini PetscFunctionBegin; 900268a049cSStefano Zampini PetscValidHeaderSpecific(mapping,IS_LTOGM_CLASSID,1); 901268a049cSStefano Zampini if (mapping->info_cached) { 902268a049cSStefano Zampini *nproc = mapping->info_nproc; 903268a049cSStefano Zampini *procs = mapping->info_procs; 904268a049cSStefano Zampini *numprocs = mapping->info_numprocs; 905268a049cSStefano Zampini *indices = mapping->info_indices; 906268a049cSStefano Zampini } else { 907268a049cSStefano Zampini ierr = ISLocalToGlobalMappingGetBlockInfo_Private(mapping,nproc,procs,numprocs,indices);CHKERRQ(ierr); 908268a049cSStefano Zampini } 909268a049cSStefano Zampini PetscFunctionReturn(0); 910268a049cSStefano Zampini } 911268a049cSStefano Zampini 912268a049cSStefano Zampini static PetscErrorCode ISLocalToGlobalMappingGetBlockInfo_Private(ISLocalToGlobalMapping mapping,PetscInt *nproc,PetscInt *procs[],PetscInt *numprocs[],PetscInt **indices[]) 913268a049cSStefano Zampini { 914268a049cSStefano Zampini PetscErrorCode ierr; 91597f1f81fSBarry Smith PetscMPIInt size,rank,tag1,tag2,tag3,*len,*source,imdex; 91632dcc486SBarry Smith PetscInt i,n = mapping->n,Ng,ng,max = 0,*lindices = mapping->indices; 91732dcc486SBarry Smith PetscInt *nprocs,*owner,nsends,*sends,j,*starts,nmax,nrecvs,*recvs,proc; 91897f1f81fSBarry Smith PetscInt cnt,scale,*ownedsenders,*nownedsenders,rstart,nowned; 91932dcc486SBarry Smith PetscInt node,nownedm,nt,*sends2,nsends2,*starts2,*lens2,*dest,nrecvs2,*starts3,*recvs2,k,*bprocs,*tmp; 92032dcc486SBarry Smith PetscInt first_procs,first_numprocs,*first_indices; 92189d82c54SBarry Smith MPI_Request *recv_waits,*send_waits; 92230dcb7c9SBarry Smith MPI_Status recv_status,*send_status,*recv_statuses; 923ce94432eSBarry Smith MPI_Comm comm; 924ace3abfcSBarry Smith PetscBool debug = PETSC_FALSE; 92589d82c54SBarry Smith 92689d82c54SBarry Smith PetscFunctionBegin; 927ce94432eSBarry Smith ierr = PetscObjectGetComm((PetscObject)mapping,&comm);CHKERRQ(ierr); 92824cf384cSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 92924cf384cSBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 93024cf384cSBarry Smith if (size == 1) { 93124cf384cSBarry Smith *nproc = 0; 9320298fd71SBarry Smith *procs = NULL; 93395dccacaSBarry Smith ierr = PetscNew(numprocs);CHKERRQ(ierr); 9341e2105dcSBarry Smith (*numprocs)[0] = 0; 93595dccacaSBarry Smith ierr = PetscNew(indices);CHKERRQ(ierr); 9360298fd71SBarry Smith (*indices)[0] = NULL; 937268a049cSStefano Zampini /* save info for reuse */ 938268a049cSStefano Zampini mapping->info_nproc = *nproc; 939268a049cSStefano Zampini mapping->info_procs = *procs; 940268a049cSStefano Zampini mapping->info_numprocs = *numprocs; 941268a049cSStefano Zampini mapping->info_indices = *indices; 942268a049cSStefano Zampini mapping->info_cached = PETSC_TRUE; 94324cf384cSBarry Smith PetscFunctionReturn(0); 94424cf384cSBarry Smith } 94524cf384cSBarry Smith 946c5929fdfSBarry Smith ierr = PetscOptionsGetBool(((PetscObject)mapping)->options,NULL,"-islocaltoglobalmappinggetinfo_debug",&debug,NULL);CHKERRQ(ierr); 94707b52d57SBarry Smith 9483677ff5aSBarry Smith /* 9496a818285SBarry Smith Notes on ISLocalToGlobalMappingGetBlockInfo 9503677ff5aSBarry Smith 9513677ff5aSBarry Smith globally owned node - the nodes that have been assigned to this processor in global 9523677ff5aSBarry Smith numbering, just for this routine. 9533677ff5aSBarry Smith 9543677ff5aSBarry Smith nontrivial globally owned node - node assigned to this processor that is on a subdomain 9553677ff5aSBarry Smith boundary (i.e. is has more than one local owner) 9563677ff5aSBarry Smith 9573677ff5aSBarry Smith locally owned node - node that exists on this processors subdomain 9583677ff5aSBarry Smith 9593677ff5aSBarry Smith nontrivial locally owned node - node that is not in the interior (i.e. has more than one 9603677ff5aSBarry Smith local subdomain 9613677ff5aSBarry Smith */ 96224cf384cSBarry Smith ierr = PetscObjectGetNewTag((PetscObject)mapping,&tag1);CHKERRQ(ierr); 96324cf384cSBarry Smith ierr = PetscObjectGetNewTag((PetscObject)mapping,&tag2);CHKERRQ(ierr); 96424cf384cSBarry Smith ierr = PetscObjectGetNewTag((PetscObject)mapping,&tag3);CHKERRQ(ierr); 96589d82c54SBarry Smith 96689d82c54SBarry Smith for (i=0; i<n; i++) { 96789d82c54SBarry Smith if (lindices[i] > max) max = lindices[i]; 96889d82c54SBarry Smith } 969b2566f29SBarry Smith ierr = MPIU_Allreduce(&max,&Ng,1,MPIU_INT,MPI_MAX,comm);CHKERRQ(ierr); 97078058e43SBarry Smith Ng++; 97189d82c54SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 97289d82c54SBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 973bc8ff85bSBarry Smith scale = Ng/size + 1; 974a2e34c3dSBarry Smith ng = scale; if (rank == size-1) ng = Ng - scale*(size-1); ng = PetscMax(1,ng); 975caba0dd0SBarry Smith rstart = scale*rank; 97689d82c54SBarry Smith 97789d82c54SBarry Smith /* determine ownership ranges of global indices */ 978785e854fSJed Brown ierr = PetscMalloc1(2*size,&nprocs);CHKERRQ(ierr); 97932dcc486SBarry Smith ierr = PetscMemzero(nprocs,2*size*sizeof(PetscInt));CHKERRQ(ierr); 98089d82c54SBarry Smith 98189d82c54SBarry Smith /* determine owners of each local node */ 982785e854fSJed Brown ierr = PetscMalloc1(n,&owner);CHKERRQ(ierr); 98389d82c54SBarry Smith for (i=0; i<n; i++) { 9843677ff5aSBarry Smith proc = lindices[i]/scale; /* processor that globally owns this index */ 98527c402fcSBarry Smith nprocs[2*proc+1] = 1; /* processor globally owns at least one of ours */ 9863677ff5aSBarry Smith owner[i] = proc; 98727c402fcSBarry Smith nprocs[2*proc]++; /* count of how many that processor globally owns of ours */ 98889d82c54SBarry Smith } 98927c402fcSBarry Smith nsends = 0; for (i=0; i<size; i++) nsends += nprocs[2*i+1]; 9907904a332SBarry Smith ierr = PetscInfo1(mapping,"Number of global owners for my local data %D\n",nsends);CHKERRQ(ierr); 99189d82c54SBarry Smith 99289d82c54SBarry Smith /* inform other processors of number of messages and max length*/ 99327c402fcSBarry Smith ierr = PetscMaxSum(comm,nprocs,&nmax,&nrecvs);CHKERRQ(ierr); 9947904a332SBarry Smith ierr = PetscInfo1(mapping,"Number of local owners for my global data %D\n",nrecvs);CHKERRQ(ierr); 99589d82c54SBarry Smith 99689d82c54SBarry Smith /* post receives for owned rows */ 997785e854fSJed Brown ierr = PetscMalloc1((2*nrecvs+1)*(nmax+1),&recvs);CHKERRQ(ierr); 998854ce69bSBarry Smith ierr = PetscMalloc1(nrecvs+1,&recv_waits);CHKERRQ(ierr); 99989d82c54SBarry Smith for (i=0; i<nrecvs; i++) { 100032dcc486SBarry Smith ierr = MPI_Irecv(recvs+2*nmax*i,2*nmax,MPIU_INT,MPI_ANY_SOURCE,tag1,comm,recv_waits+i);CHKERRQ(ierr); 100189d82c54SBarry Smith } 100289d82c54SBarry Smith 100389d82c54SBarry Smith /* pack messages containing lists of local nodes to owners */ 1004854ce69bSBarry Smith ierr = PetscMalloc1(2*n+1,&sends);CHKERRQ(ierr); 1005854ce69bSBarry Smith ierr = PetscMalloc1(size+1,&starts);CHKERRQ(ierr); 100689d82c54SBarry Smith starts[0] = 0; 1007f6e5521dSKarl Rupp for (i=1; i<size; i++) starts[i] = starts[i-1] + 2*nprocs[2*i-2]; 100889d82c54SBarry Smith for (i=0; i<n; i++) { 100989d82c54SBarry Smith sends[starts[owner[i]]++] = lindices[i]; 101030dcb7c9SBarry Smith sends[starts[owner[i]]++] = i; 101189d82c54SBarry Smith } 101289d82c54SBarry Smith ierr = PetscFree(owner);CHKERRQ(ierr); 101389d82c54SBarry Smith starts[0] = 0; 1014f6e5521dSKarl Rupp for (i=1; i<size; i++) starts[i] = starts[i-1] + 2*nprocs[2*i-2]; 101589d82c54SBarry Smith 101689d82c54SBarry Smith /* send the messages */ 1017854ce69bSBarry Smith ierr = PetscMalloc1(nsends+1,&send_waits);CHKERRQ(ierr); 1018854ce69bSBarry Smith ierr = PetscMalloc1(nsends+1,&dest);CHKERRQ(ierr); 101989d82c54SBarry Smith cnt = 0; 102089d82c54SBarry Smith for (i=0; i<size; i++) { 102127c402fcSBarry Smith if (nprocs[2*i]) { 102232dcc486SBarry Smith ierr = MPI_Isend(sends+starts[i],2*nprocs[2*i],MPIU_INT,i,tag1,comm,send_waits+cnt);CHKERRQ(ierr); 102330dcb7c9SBarry Smith dest[cnt] = i; 102489d82c54SBarry Smith cnt++; 102589d82c54SBarry Smith } 102689d82c54SBarry Smith } 102789d82c54SBarry Smith ierr = PetscFree(starts);CHKERRQ(ierr); 102889d82c54SBarry Smith 102989d82c54SBarry Smith /* wait on receives */ 1030854ce69bSBarry Smith ierr = PetscMalloc1(nrecvs+1,&source);CHKERRQ(ierr); 1031854ce69bSBarry Smith ierr = PetscMalloc1(nrecvs+1,&len);CHKERRQ(ierr); 103289d82c54SBarry Smith cnt = nrecvs; 1033854ce69bSBarry Smith ierr = PetscMalloc1(ng+1,&nownedsenders);CHKERRQ(ierr); 103432dcc486SBarry Smith ierr = PetscMemzero(nownedsenders,ng*sizeof(PetscInt));CHKERRQ(ierr); 103589d82c54SBarry Smith while (cnt) { 103689d82c54SBarry Smith ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr); 103789d82c54SBarry Smith /* unpack receives into our local space */ 103832dcc486SBarry Smith ierr = MPI_Get_count(&recv_status,MPIU_INT,&len[imdex]);CHKERRQ(ierr); 103989d82c54SBarry Smith source[imdex] = recv_status.MPI_SOURCE; 104030dcb7c9SBarry Smith len[imdex] = len[imdex]/2; 1041caba0dd0SBarry Smith /* count how many local owners for each of my global owned indices */ 104230dcb7c9SBarry Smith for (i=0; i<len[imdex]; i++) nownedsenders[recvs[2*imdex*nmax+2*i]-rstart]++; 104389d82c54SBarry Smith cnt--; 104489d82c54SBarry Smith } 104589d82c54SBarry Smith ierr = PetscFree(recv_waits);CHKERRQ(ierr); 104689d82c54SBarry Smith 104730dcb7c9SBarry Smith /* count how many globally owned indices are on an edge multiplied by how many processors own them. */ 1048bc8ff85bSBarry Smith nowned = 0; 1049bc8ff85bSBarry Smith nownedm = 0; 1050bc8ff85bSBarry Smith for (i=0; i<ng; i++) { 1051bc8ff85bSBarry Smith if (nownedsenders[i] > 1) {nownedm += nownedsenders[i]; nowned++;} 1052bc8ff85bSBarry Smith } 1053bc8ff85bSBarry Smith 1054bc8ff85bSBarry Smith /* create single array to contain rank of all local owners of each globally owned index */ 1055854ce69bSBarry Smith ierr = PetscMalloc1(nownedm+1,&ownedsenders);CHKERRQ(ierr); 1056854ce69bSBarry Smith ierr = PetscMalloc1(ng+1,&starts);CHKERRQ(ierr); 1057bc8ff85bSBarry Smith starts[0] = 0; 1058bc8ff85bSBarry Smith for (i=1; i<ng; i++) { 1059bc8ff85bSBarry Smith if (nownedsenders[i-1] > 1) starts[i] = starts[i-1] + nownedsenders[i-1]; 1060bc8ff85bSBarry Smith else starts[i] = starts[i-1]; 1061bc8ff85bSBarry Smith } 1062bc8ff85bSBarry Smith 106330dcb7c9SBarry Smith /* for each nontrival globally owned node list all arriving processors */ 1064bc8ff85bSBarry Smith for (i=0; i<nrecvs; i++) { 1065bc8ff85bSBarry Smith for (j=0; j<len[i]; j++) { 106630dcb7c9SBarry Smith node = recvs[2*i*nmax+2*j]-rstart; 1067f6e5521dSKarl Rupp if (nownedsenders[node] > 1) ownedsenders[starts[node]++] = source[i]; 1068bc8ff85bSBarry Smith } 1069bc8ff85bSBarry Smith } 1070bc8ff85bSBarry Smith 107107b52d57SBarry Smith if (debug) { /* ----------------------------------- */ 107230dcb7c9SBarry Smith starts[0] = 0; 107330dcb7c9SBarry Smith for (i=1; i<ng; i++) { 107430dcb7c9SBarry Smith if (nownedsenders[i-1] > 1) starts[i] = starts[i-1] + nownedsenders[i-1]; 107530dcb7c9SBarry Smith else starts[i] = starts[i-1]; 107630dcb7c9SBarry Smith } 107730dcb7c9SBarry Smith for (i=0; i<ng; i++) { 107830dcb7c9SBarry Smith if (nownedsenders[i] > 1) { 10797904a332SBarry Smith ierr = PetscSynchronizedPrintf(comm,"[%d] global node %D local owner processors: ",rank,i+rstart);CHKERRQ(ierr); 108030dcb7c9SBarry Smith for (j=0; j<nownedsenders[i]; j++) { 10817904a332SBarry Smith ierr = PetscSynchronizedPrintf(comm,"%D ",ownedsenders[starts[i]+j]);CHKERRQ(ierr); 108230dcb7c9SBarry Smith } 108330dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"\n");CHKERRQ(ierr); 108430dcb7c9SBarry Smith } 108530dcb7c9SBarry Smith } 10860ec8b6e3SBarry Smith ierr = PetscSynchronizedFlush(comm,PETSC_STDOUT);CHKERRQ(ierr); 108707b52d57SBarry Smith } /* ----------------------------------- */ 108830dcb7c9SBarry Smith 10893677ff5aSBarry Smith /* wait on original sends */ 10903a96401aSBarry Smith if (nsends) { 1091785e854fSJed Brown ierr = PetscMalloc1(nsends,&send_status);CHKERRQ(ierr); 10923a96401aSBarry Smith ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr); 10933a96401aSBarry Smith ierr = PetscFree(send_status);CHKERRQ(ierr); 10943a96401aSBarry Smith } 109589d82c54SBarry Smith ierr = PetscFree(send_waits);CHKERRQ(ierr); 10963a96401aSBarry Smith ierr = PetscFree(sends);CHKERRQ(ierr); 10973677ff5aSBarry Smith ierr = PetscFree(nprocs);CHKERRQ(ierr); 10983677ff5aSBarry Smith 10993677ff5aSBarry Smith /* pack messages to send back to local owners */ 110030dcb7c9SBarry Smith starts[0] = 0; 110130dcb7c9SBarry Smith for (i=1; i<ng; i++) { 110230dcb7c9SBarry Smith if (nownedsenders[i-1] > 1) starts[i] = starts[i-1] + nownedsenders[i-1]; 110330dcb7c9SBarry Smith else starts[i] = starts[i-1]; 110430dcb7c9SBarry Smith } 110530dcb7c9SBarry Smith nsends2 = nrecvs; 1106854ce69bSBarry Smith ierr = PetscMalloc1(nsends2+1,&nprocs);CHKERRQ(ierr); /* length of each message */ 110730dcb7c9SBarry Smith for (i=0; i<nrecvs; i++) { 110830dcb7c9SBarry Smith nprocs[i] = 1; 110930dcb7c9SBarry Smith for (j=0; j<len[i]; j++) { 111030dcb7c9SBarry Smith node = recvs[2*i*nmax+2*j]-rstart; 1111f6e5521dSKarl Rupp if (nownedsenders[node] > 1) nprocs[i] += 2 + nownedsenders[node]; 111230dcb7c9SBarry Smith } 111330dcb7c9SBarry Smith } 1114f6e5521dSKarl Rupp nt = 0; 1115f6e5521dSKarl Rupp for (i=0; i<nsends2; i++) nt += nprocs[i]; 1116f6e5521dSKarl Rupp 1117854ce69bSBarry Smith ierr = PetscMalloc1(nt+1,&sends2);CHKERRQ(ierr); 1118854ce69bSBarry Smith ierr = PetscMalloc1(nsends2+1,&starts2);CHKERRQ(ierr); 1119f6e5521dSKarl Rupp 1120f6e5521dSKarl Rupp starts2[0] = 0; 1121f6e5521dSKarl Rupp for (i=1; i<nsends2; i++) starts2[i] = starts2[i-1] + nprocs[i-1]; 112230dcb7c9SBarry Smith /* 112330dcb7c9SBarry Smith Each message is 1 + nprocs[i] long, and consists of 112430dcb7c9SBarry Smith (0) the number of nodes being sent back 112530dcb7c9SBarry Smith (1) the local node number, 112630dcb7c9SBarry Smith (2) the number of processors sharing it, 112730dcb7c9SBarry Smith (3) the processors sharing it 112830dcb7c9SBarry Smith */ 112930dcb7c9SBarry Smith for (i=0; i<nsends2; i++) { 113030dcb7c9SBarry Smith cnt = 1; 113130dcb7c9SBarry Smith sends2[starts2[i]] = 0; 113230dcb7c9SBarry Smith for (j=0; j<len[i]; j++) { 113330dcb7c9SBarry Smith node = recvs[2*i*nmax+2*j]-rstart; 113430dcb7c9SBarry Smith if (nownedsenders[node] > 1) { 113530dcb7c9SBarry Smith sends2[starts2[i]]++; 113630dcb7c9SBarry Smith sends2[starts2[i]+cnt++] = recvs[2*i*nmax+2*j+1]; 113730dcb7c9SBarry Smith sends2[starts2[i]+cnt++] = nownedsenders[node]; 113832dcc486SBarry Smith ierr = PetscMemcpy(&sends2[starts2[i]+cnt],&ownedsenders[starts[node]],nownedsenders[node]*sizeof(PetscInt));CHKERRQ(ierr); 113930dcb7c9SBarry Smith cnt += nownedsenders[node]; 114030dcb7c9SBarry Smith } 114130dcb7c9SBarry Smith } 114230dcb7c9SBarry Smith } 114330dcb7c9SBarry Smith 114430dcb7c9SBarry Smith /* receive the message lengths */ 114530dcb7c9SBarry Smith nrecvs2 = nsends; 1146854ce69bSBarry Smith ierr = PetscMalloc1(nrecvs2+1,&lens2);CHKERRQ(ierr); 1147854ce69bSBarry Smith ierr = PetscMalloc1(nrecvs2+1,&starts3);CHKERRQ(ierr); 1148854ce69bSBarry Smith ierr = PetscMalloc1(nrecvs2+1,&recv_waits);CHKERRQ(ierr); 114930dcb7c9SBarry Smith for (i=0; i<nrecvs2; i++) { 1150d44834fbSBarry Smith ierr = MPI_Irecv(&lens2[i],1,MPIU_INT,dest[i],tag2,comm,recv_waits+i);CHKERRQ(ierr); 115130dcb7c9SBarry Smith } 1152d44834fbSBarry Smith 11538a8e0b3aSBarry Smith /* send the message lengths */ 11548a8e0b3aSBarry Smith for (i=0; i<nsends2; i++) { 11558a8e0b3aSBarry Smith ierr = MPI_Send(&nprocs[i],1,MPIU_INT,source[i],tag2,comm);CHKERRQ(ierr); 11568a8e0b3aSBarry Smith } 11578a8e0b3aSBarry Smith 1158d44834fbSBarry Smith /* wait on receives of lens */ 11590c468ba9SBarry Smith if (nrecvs2) { 1160785e854fSJed Brown ierr = PetscMalloc1(nrecvs2,&recv_statuses);CHKERRQ(ierr); 1161d44834fbSBarry Smith ierr = MPI_Waitall(nrecvs2,recv_waits,recv_statuses);CHKERRQ(ierr); 1162d44834fbSBarry Smith ierr = PetscFree(recv_statuses);CHKERRQ(ierr); 11630c468ba9SBarry Smith } 1164a2ea699eSBarry Smith ierr = PetscFree(recv_waits);CHKERRQ(ierr); 1165d44834fbSBarry Smith 116630dcb7c9SBarry Smith starts3[0] = 0; 1167d44834fbSBarry Smith nt = 0; 116830dcb7c9SBarry Smith for (i=0; i<nrecvs2-1; i++) { 116930dcb7c9SBarry Smith starts3[i+1] = starts3[i] + lens2[i]; 1170d44834fbSBarry Smith nt += lens2[i]; 117130dcb7c9SBarry Smith } 117276466f69SStefano Zampini if (nrecvs2) nt += lens2[nrecvs2-1]; 1173d44834fbSBarry Smith 1174854ce69bSBarry Smith ierr = PetscMalloc1(nt+1,&recvs2);CHKERRQ(ierr); 1175854ce69bSBarry Smith ierr = PetscMalloc1(nrecvs2+1,&recv_waits);CHKERRQ(ierr); 117652b72c4aSBarry Smith for (i=0; i<nrecvs2; i++) { 117732dcc486SBarry Smith ierr = MPI_Irecv(recvs2+starts3[i],lens2[i],MPIU_INT,dest[i],tag3,comm,recv_waits+i);CHKERRQ(ierr); 117830dcb7c9SBarry Smith } 117930dcb7c9SBarry Smith 118030dcb7c9SBarry Smith /* send the messages */ 1181854ce69bSBarry Smith ierr = PetscMalloc1(nsends2+1,&send_waits);CHKERRQ(ierr); 118230dcb7c9SBarry Smith for (i=0; i<nsends2; i++) { 118332dcc486SBarry Smith ierr = MPI_Isend(sends2+starts2[i],nprocs[i],MPIU_INT,source[i],tag3,comm,send_waits+i);CHKERRQ(ierr); 118430dcb7c9SBarry Smith } 118530dcb7c9SBarry Smith 118630dcb7c9SBarry Smith /* wait on receives */ 11870c468ba9SBarry Smith if (nrecvs2) { 1188785e854fSJed Brown ierr = PetscMalloc1(nrecvs2,&recv_statuses);CHKERRQ(ierr); 118930dcb7c9SBarry Smith ierr = MPI_Waitall(nrecvs2,recv_waits,recv_statuses);CHKERRQ(ierr); 119030dcb7c9SBarry Smith ierr = PetscFree(recv_statuses);CHKERRQ(ierr); 11910c468ba9SBarry Smith } 119230dcb7c9SBarry Smith ierr = PetscFree(recv_waits);CHKERRQ(ierr); 119330dcb7c9SBarry Smith ierr = PetscFree(nprocs);CHKERRQ(ierr); 119430dcb7c9SBarry Smith 119507b52d57SBarry Smith if (debug) { /* ----------------------------------- */ 119630dcb7c9SBarry Smith cnt = 0; 119730dcb7c9SBarry Smith for (i=0; i<nrecvs2; i++) { 119830dcb7c9SBarry Smith nt = recvs2[cnt++]; 119930dcb7c9SBarry Smith for (j=0; j<nt; j++) { 12007904a332SBarry Smith ierr = PetscSynchronizedPrintf(comm,"[%d] local node %D number of subdomains %D: ",rank,recvs2[cnt],recvs2[cnt+1]);CHKERRQ(ierr); 120130dcb7c9SBarry Smith for (k=0; k<recvs2[cnt+1]; k++) { 12027904a332SBarry Smith ierr = PetscSynchronizedPrintf(comm,"%D ",recvs2[cnt+2+k]);CHKERRQ(ierr); 120330dcb7c9SBarry Smith } 120430dcb7c9SBarry Smith cnt += 2 + recvs2[cnt+1]; 120530dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"\n");CHKERRQ(ierr); 120630dcb7c9SBarry Smith } 120730dcb7c9SBarry Smith } 12080ec8b6e3SBarry Smith ierr = PetscSynchronizedFlush(comm,PETSC_STDOUT);CHKERRQ(ierr); 120907b52d57SBarry Smith } /* ----------------------------------- */ 121030dcb7c9SBarry Smith 121130dcb7c9SBarry Smith /* count number subdomains for each local node */ 1212785e854fSJed Brown ierr = PetscMalloc1(size,&nprocs);CHKERRQ(ierr); 121332dcc486SBarry Smith ierr = PetscMemzero(nprocs,size*sizeof(PetscInt));CHKERRQ(ierr); 121430dcb7c9SBarry Smith cnt = 0; 121530dcb7c9SBarry Smith for (i=0; i<nrecvs2; i++) { 121630dcb7c9SBarry Smith nt = recvs2[cnt++]; 121730dcb7c9SBarry Smith for (j=0; j<nt; j++) { 1218f6e5521dSKarl Rupp for (k=0; k<recvs2[cnt+1]; k++) nprocs[recvs2[cnt+2+k]]++; 121930dcb7c9SBarry Smith cnt += 2 + recvs2[cnt+1]; 122030dcb7c9SBarry Smith } 122130dcb7c9SBarry Smith } 122230dcb7c9SBarry Smith nt = 0; for (i=0; i<size; i++) nt += (nprocs[i] > 0); 122330dcb7c9SBarry Smith *nproc = nt; 1224854ce69bSBarry Smith ierr = PetscMalloc1(nt+1,procs);CHKERRQ(ierr); 1225854ce69bSBarry Smith ierr = PetscMalloc1(nt+1,numprocs);CHKERRQ(ierr); 1226854ce69bSBarry Smith ierr = PetscMalloc1(nt+1,indices);CHKERRQ(ierr); 12270298fd71SBarry Smith for (i=0;i<nt+1;i++) (*indices)[i]=NULL; 1228785e854fSJed Brown ierr = PetscMalloc1(size,&bprocs);CHKERRQ(ierr); 122930dcb7c9SBarry Smith cnt = 0; 123030dcb7c9SBarry Smith for (i=0; i<size; i++) { 123130dcb7c9SBarry Smith if (nprocs[i] > 0) { 123230dcb7c9SBarry Smith bprocs[i] = cnt; 123330dcb7c9SBarry Smith (*procs)[cnt] = i; 123430dcb7c9SBarry Smith (*numprocs)[cnt] = nprocs[i]; 1235785e854fSJed Brown ierr = PetscMalloc1(nprocs[i],&(*indices)[cnt]);CHKERRQ(ierr); 123630dcb7c9SBarry Smith cnt++; 123730dcb7c9SBarry Smith } 123830dcb7c9SBarry Smith } 123930dcb7c9SBarry Smith 124030dcb7c9SBarry Smith /* make the list of subdomains for each nontrivial local node */ 124132dcc486SBarry Smith ierr = PetscMemzero(*numprocs,nt*sizeof(PetscInt));CHKERRQ(ierr); 124230dcb7c9SBarry Smith cnt = 0; 124330dcb7c9SBarry Smith for (i=0; i<nrecvs2; i++) { 124430dcb7c9SBarry Smith nt = recvs2[cnt++]; 124530dcb7c9SBarry Smith for (j=0; j<nt; j++) { 1246f6e5521dSKarl Rupp for (k=0; k<recvs2[cnt+1]; k++) (*indices)[bprocs[recvs2[cnt+2+k]]][(*numprocs)[bprocs[recvs2[cnt+2+k]]]++] = recvs2[cnt]; 124730dcb7c9SBarry Smith cnt += 2 + recvs2[cnt+1]; 124830dcb7c9SBarry Smith } 124930dcb7c9SBarry Smith } 125030dcb7c9SBarry Smith ierr = PetscFree(bprocs);CHKERRQ(ierr); 125107b52d57SBarry Smith ierr = PetscFree(recvs2);CHKERRQ(ierr); 125230dcb7c9SBarry Smith 125307b52d57SBarry Smith /* sort the node indexing by their global numbers */ 125407b52d57SBarry Smith nt = *nproc; 125507b52d57SBarry Smith for (i=0; i<nt; i++) { 1256854ce69bSBarry Smith ierr = PetscMalloc1((*numprocs)[i],&tmp);CHKERRQ(ierr); 1257f6e5521dSKarl Rupp for (j=0; j<(*numprocs)[i]; j++) tmp[j] = lindices[(*indices)[i][j]]; 125807b52d57SBarry Smith ierr = PetscSortIntWithArray((*numprocs)[i],tmp,(*indices)[i]);CHKERRQ(ierr); 125907b52d57SBarry Smith ierr = PetscFree(tmp);CHKERRQ(ierr); 126007b52d57SBarry Smith } 126107b52d57SBarry Smith 126207b52d57SBarry Smith if (debug) { /* ----------------------------------- */ 126330dcb7c9SBarry Smith nt = *nproc; 126430dcb7c9SBarry Smith for (i=0; i<nt; i++) { 12657904a332SBarry Smith ierr = PetscSynchronizedPrintf(comm,"[%d] subdomain %D number of indices %D: ",rank,(*procs)[i],(*numprocs)[i]);CHKERRQ(ierr); 126630dcb7c9SBarry Smith for (j=0; j<(*numprocs)[i]; j++) { 12677904a332SBarry Smith ierr = PetscSynchronizedPrintf(comm,"%D ",(*indices)[i][j]);CHKERRQ(ierr); 126830dcb7c9SBarry Smith } 126930dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"\n");CHKERRQ(ierr); 127030dcb7c9SBarry Smith } 12710ec8b6e3SBarry Smith ierr = PetscSynchronizedFlush(comm,PETSC_STDOUT);CHKERRQ(ierr); 127207b52d57SBarry Smith } /* ----------------------------------- */ 127330dcb7c9SBarry Smith 127430dcb7c9SBarry Smith /* wait on sends */ 127530dcb7c9SBarry Smith if (nsends2) { 1276785e854fSJed Brown ierr = PetscMalloc1(nsends2,&send_status);CHKERRQ(ierr); 127730dcb7c9SBarry Smith ierr = MPI_Waitall(nsends2,send_waits,send_status);CHKERRQ(ierr); 127830dcb7c9SBarry Smith ierr = PetscFree(send_status);CHKERRQ(ierr); 127930dcb7c9SBarry Smith } 128030dcb7c9SBarry Smith 128130dcb7c9SBarry Smith ierr = PetscFree(starts3);CHKERRQ(ierr); 128230dcb7c9SBarry Smith ierr = PetscFree(dest);CHKERRQ(ierr); 128330dcb7c9SBarry Smith ierr = PetscFree(send_waits);CHKERRQ(ierr); 12843677ff5aSBarry Smith 1285bc8ff85bSBarry Smith ierr = PetscFree(nownedsenders);CHKERRQ(ierr); 1286bc8ff85bSBarry Smith ierr = PetscFree(ownedsenders);CHKERRQ(ierr); 1287bc8ff85bSBarry Smith ierr = PetscFree(starts);CHKERRQ(ierr); 128830dcb7c9SBarry Smith ierr = PetscFree(starts2);CHKERRQ(ierr); 128930dcb7c9SBarry Smith ierr = PetscFree(lens2);CHKERRQ(ierr); 129089d82c54SBarry Smith 129189d82c54SBarry Smith ierr = PetscFree(source);CHKERRQ(ierr); 129297f1f81fSBarry Smith ierr = PetscFree(len);CHKERRQ(ierr); 129389d82c54SBarry Smith ierr = PetscFree(recvs);CHKERRQ(ierr); 12943a96401aSBarry Smith ierr = PetscFree(nprocs);CHKERRQ(ierr); 129530dcb7c9SBarry Smith ierr = PetscFree(sends2);CHKERRQ(ierr); 129624cf384cSBarry Smith 129724cf384cSBarry Smith /* put the information about myself as the first entry in the list */ 129824cf384cSBarry Smith first_procs = (*procs)[0]; 129924cf384cSBarry Smith first_numprocs = (*numprocs)[0]; 130024cf384cSBarry Smith first_indices = (*indices)[0]; 130124cf384cSBarry Smith for (i=0; i<*nproc; i++) { 130224cf384cSBarry Smith if ((*procs)[i] == rank) { 130324cf384cSBarry Smith (*procs)[0] = (*procs)[i]; 130424cf384cSBarry Smith (*numprocs)[0] = (*numprocs)[i]; 130524cf384cSBarry Smith (*indices)[0] = (*indices)[i]; 130624cf384cSBarry Smith (*procs)[i] = first_procs; 130724cf384cSBarry Smith (*numprocs)[i] = first_numprocs; 130824cf384cSBarry Smith (*indices)[i] = first_indices; 130924cf384cSBarry Smith break; 131024cf384cSBarry Smith } 131124cf384cSBarry Smith } 1312268a049cSStefano Zampini 1313268a049cSStefano Zampini /* save info for reuse */ 1314268a049cSStefano Zampini mapping->info_nproc = *nproc; 1315268a049cSStefano Zampini mapping->info_procs = *procs; 1316268a049cSStefano Zampini mapping->info_numprocs = *numprocs; 1317268a049cSStefano Zampini mapping->info_indices = *indices; 1318268a049cSStefano Zampini mapping->info_cached = PETSC_TRUE; 131989d82c54SBarry Smith PetscFunctionReturn(0); 132089d82c54SBarry Smith } 132189d82c54SBarry Smith 13226a818285SBarry Smith /*@C 13236a818285SBarry Smith ISLocalToGlobalMappingRestoreBlockInfo - Frees the memory allocated by ISLocalToGlobalMappingGetBlockInfo() 13246a818285SBarry Smith 13256a818285SBarry Smith Collective on ISLocalToGlobalMapping 13266a818285SBarry Smith 13276a818285SBarry Smith Input Parameters: 13286a818285SBarry Smith . mapping - the mapping from local to global indexing 13296a818285SBarry Smith 13306a818285SBarry Smith Output Parameter: 13316a818285SBarry Smith + nproc - number of processors that are connected to this one 13326a818285SBarry Smith . proc - neighboring processors 13336a818285SBarry Smith . numproc - number of indices for each processor 13346a818285SBarry Smith - indices - indices of local nodes shared with neighbor (sorted by global numbering) 13356a818285SBarry Smith 13366a818285SBarry Smith Level: advanced 13376a818285SBarry Smith 13386a818285SBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreateIS(), ISLocalToGlobalMappingCreate(), 13396a818285SBarry Smith ISLocalToGlobalMappingGetInfo() 13406a818285SBarry Smith @*/ 13416a818285SBarry Smith PetscErrorCode ISLocalToGlobalMappingRestoreBlockInfo(ISLocalToGlobalMapping mapping,PetscInt *nproc,PetscInt *procs[],PetscInt *numprocs[],PetscInt **indices[]) 13426a818285SBarry Smith { 13436a818285SBarry Smith PetscErrorCode ierr; 13446a818285SBarry Smith 13456a818285SBarry Smith PetscFunctionBegin; 1346cbc1caf0SMatthew G. Knepley PetscValidHeaderSpecific(mapping,IS_LTOGM_CLASSID,1); 1347268a049cSStefano Zampini if (mapping->info_free) { 13486a818285SBarry Smith ierr = PetscFree(*numprocs);CHKERRQ(ierr); 13496a818285SBarry Smith if (*indices) { 1350268a049cSStefano Zampini PetscInt i; 1351268a049cSStefano Zampini 13526a818285SBarry Smith ierr = PetscFree((*indices)[0]);CHKERRQ(ierr); 13536a818285SBarry Smith for (i=1; i<*nproc; i++) { 13546a818285SBarry Smith ierr = PetscFree((*indices)[i]);CHKERRQ(ierr); 13556a818285SBarry Smith } 13566a818285SBarry Smith ierr = PetscFree(*indices);CHKERRQ(ierr); 13576a818285SBarry Smith } 1358268a049cSStefano Zampini } 1359268a049cSStefano Zampini *nproc = 0; 1360268a049cSStefano Zampini *procs = NULL; 1361268a049cSStefano Zampini *numprocs = NULL; 1362268a049cSStefano Zampini *indices = NULL; 13636a818285SBarry Smith PetscFunctionReturn(0); 13646a818285SBarry Smith } 13656a818285SBarry Smith 13666a818285SBarry Smith /*@C 13676a818285SBarry Smith ISLocalToGlobalMappingGetInfo - Gets the neighbor information for each processor and 13686a818285SBarry Smith each index shared by more than one processor 13696a818285SBarry Smith 13706a818285SBarry Smith Collective on ISLocalToGlobalMapping 13716a818285SBarry Smith 13726a818285SBarry Smith Input Parameters: 13736a818285SBarry Smith . mapping - the mapping from local to global indexing 13746a818285SBarry Smith 13756a818285SBarry Smith Output Parameter: 13766a818285SBarry Smith + nproc - number of processors that are connected to this one 13776a818285SBarry Smith . proc - neighboring processors 13786a818285SBarry Smith . numproc - number of indices for each subdomain (processor) 13796a818285SBarry Smith - indices - indices of nodes (in local numbering) shared with neighbors (sorted by global numbering) 13806a818285SBarry Smith 13816a818285SBarry Smith Level: advanced 13826a818285SBarry Smith 13836a818285SBarry Smith Concepts: mapping^local to global 13846a818285SBarry Smith 13856a818285SBarry Smith Fortran Usage: 13866a818285SBarry Smith $ ISLocalToGlobalMpngGetInfoSize(ISLocalToGlobalMapping,PetscInt nproc,PetscInt numprocmax,ierr) followed by 13876a818285SBarry Smith $ ISLocalToGlobalMappingGetInfo(ISLocalToGlobalMapping,PetscInt nproc, PetscInt procs[nproc],PetscInt numprocs[nproc], 13886a818285SBarry Smith PetscInt indices[nproc][numprocmax],ierr) 13896a818285SBarry Smith There is no ISLocalToGlobalMappingRestoreInfo() in Fortran. You must make sure that procs[], numprocs[] and 13906a818285SBarry Smith indices[][] are large enough arrays, either by allocating them dynamically or defining static ones large enough. 13916a818285SBarry Smith 13926a818285SBarry Smith 13936a818285SBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreateIS(), ISLocalToGlobalMappingCreate(), 13946a818285SBarry Smith ISLocalToGlobalMappingRestoreInfo() 13956a818285SBarry Smith @*/ 13966a818285SBarry Smith PetscErrorCode ISLocalToGlobalMappingGetInfo(ISLocalToGlobalMapping mapping,PetscInt *nproc,PetscInt *procs[],PetscInt *numprocs[],PetscInt **indices[]) 13976a818285SBarry Smith { 13986a818285SBarry Smith PetscErrorCode ierr; 1399268a049cSStefano Zampini PetscInt **bindices = NULL,*bnumprocs = NULL,bs = mapping->bs,i,j,k; 14006a818285SBarry Smith 14016a818285SBarry Smith PetscFunctionBegin; 14026a818285SBarry Smith PetscValidHeaderSpecific(mapping,IS_LTOGM_CLASSID,1); 1403268a049cSStefano Zampini ierr = ISLocalToGlobalMappingGetBlockInfo(mapping,nproc,procs,&bnumprocs,&bindices);CHKERRQ(ierr); 1404268a049cSStefano Zampini if (bs > 1) { /* we need to expand the cached info */ 1405732f65e3SBarry Smith ierr = PetscCalloc1(*nproc,&*indices);CHKERRQ(ierr); 1406268a049cSStefano Zampini ierr = PetscCalloc1(*nproc,&*numprocs);CHKERRQ(ierr); 14076a818285SBarry Smith for (i=0; i<*nproc; i++) { 1408268a049cSStefano Zampini ierr = PetscMalloc1(bs*bnumprocs[i],&(*indices)[i]);CHKERRQ(ierr); 1409268a049cSStefano Zampini for (j=0; j<bnumprocs[i]; j++) { 14106a818285SBarry Smith for (k=0; k<bs; k++) { 14116a818285SBarry Smith (*indices)[i][j*bs+k] = bs*bindices[i][j] + k; 14126a818285SBarry Smith } 14136a818285SBarry Smith } 1414268a049cSStefano Zampini (*numprocs)[i] = bnumprocs[i]*bs; 14156a818285SBarry Smith } 1416268a049cSStefano Zampini mapping->info_free = PETSC_TRUE; 1417268a049cSStefano Zampini } else { 1418268a049cSStefano Zampini *numprocs = bnumprocs; 1419268a049cSStefano Zampini *indices = bindices; 14206a818285SBarry Smith } 14216a818285SBarry Smith PetscFunctionReturn(0); 14226a818285SBarry Smith } 14236a818285SBarry Smith 142407b52d57SBarry Smith /*@C 142507b52d57SBarry Smith ISLocalToGlobalMappingRestoreInfo - Frees the memory allocated by ISLocalToGlobalMappingGetInfo() 142689d82c54SBarry Smith 142707b52d57SBarry Smith Collective on ISLocalToGlobalMapping 142807b52d57SBarry Smith 142907b52d57SBarry Smith Input Parameters: 143007b52d57SBarry Smith . mapping - the mapping from local to global indexing 143107b52d57SBarry Smith 143207b52d57SBarry Smith Output Parameter: 143307b52d57SBarry Smith + nproc - number of processors that are connected to this one 143407b52d57SBarry Smith . proc - neighboring processors 143507b52d57SBarry Smith . numproc - number of indices for each processor 143607b52d57SBarry Smith - indices - indices of local nodes shared with neighbor (sorted by global numbering) 143707b52d57SBarry Smith 143807b52d57SBarry Smith Level: advanced 143907b52d57SBarry Smith 144007b52d57SBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreateIS(), ISLocalToGlobalMappingCreate(), 144107b52d57SBarry Smith ISLocalToGlobalMappingGetInfo() 144207b52d57SBarry Smith @*/ 14437087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingRestoreInfo(ISLocalToGlobalMapping mapping,PetscInt *nproc,PetscInt *procs[],PetscInt *numprocs[],PetscInt **indices[]) 144407b52d57SBarry Smith { 14456849ba73SBarry Smith PetscErrorCode ierr; 144607b52d57SBarry Smith 144707b52d57SBarry Smith PetscFunctionBegin; 14486a818285SBarry Smith ierr = ISLocalToGlobalMappingRestoreBlockInfo(mapping,nproc,procs,numprocs,indices);CHKERRQ(ierr); 144907b52d57SBarry Smith PetscFunctionReturn(0); 145007b52d57SBarry Smith } 145186994e45SJed Brown 145286994e45SJed Brown /*@C 1453107e9a97SBarry Smith ISLocalToGlobalMappingGetIndices - Get global indices for every local point that is mapped 145486994e45SJed Brown 145586994e45SJed Brown Not Collective 145686994e45SJed Brown 145786994e45SJed Brown Input Arguments: 145886994e45SJed Brown . ltog - local to global mapping 145986994e45SJed Brown 146086994e45SJed Brown Output Arguments: 1461565245c5SBarry Smith . array - array of indices, the length of this array may be obtained with ISLocalToGlobalMappingGetSize() 146286994e45SJed Brown 146386994e45SJed Brown Level: advanced 146486994e45SJed Brown 1465107e9a97SBarry Smith Notes: ISLocalToGlobalMappingGetSize() returns the length the this array 1466107e9a97SBarry Smith 1467107e9a97SBarry Smith .seealso: ISLocalToGlobalMappingCreate(), ISLocalToGlobalMappingApply(), ISLocalToGlobalMappingRestoreIndices(), ISLocalToGlobalMappingGetBlockIndices(), ISLocalToGlobalMappingRestoreBlockIndices() 146886994e45SJed Brown @*/ 14697087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingGetIndices(ISLocalToGlobalMapping ltog,const PetscInt **array) 147086994e45SJed Brown { 147186994e45SJed Brown PetscFunctionBegin; 147286994e45SJed Brown PetscValidHeaderSpecific(ltog,IS_LTOGM_CLASSID,1); 147386994e45SJed Brown PetscValidPointer(array,2); 147445b6f7e9SBarry Smith if (ltog->bs == 1) { 147586994e45SJed Brown *array = ltog->indices; 147645b6f7e9SBarry Smith } else { 147745b6f7e9SBarry Smith PetscInt *jj,k,i,j,n = ltog->n, bs = ltog->bs; 147845b6f7e9SBarry Smith const PetscInt *ii; 147945b6f7e9SBarry Smith PetscErrorCode ierr; 148045b6f7e9SBarry Smith 148145b6f7e9SBarry Smith ierr = PetscMalloc1(bs*n,&jj);CHKERRQ(ierr); 148245b6f7e9SBarry Smith *array = jj; 148345b6f7e9SBarry Smith k = 0; 148445b6f7e9SBarry Smith ii = ltog->indices; 148545b6f7e9SBarry Smith for (i=0; i<n; i++) 148645b6f7e9SBarry Smith for (j=0; j<bs; j++) 148745b6f7e9SBarry Smith jj[k++] = bs*ii[i] + j; 148845b6f7e9SBarry Smith } 148986994e45SJed Brown PetscFunctionReturn(0); 149086994e45SJed Brown } 149186994e45SJed Brown 149286994e45SJed Brown /*@C 1493193a2b41SJulian Andrej ISLocalToGlobalMappingRestoreIndices - Restore indices obtained with ISLocalToGlobalMappingGetIndices() 149486994e45SJed Brown 149586994e45SJed Brown Not Collective 149686994e45SJed Brown 149786994e45SJed Brown Input Arguments: 149886994e45SJed Brown + ltog - local to global mapping 149986994e45SJed Brown - array - array of indices 150086994e45SJed Brown 150186994e45SJed Brown Level: advanced 150286994e45SJed Brown 150386994e45SJed Brown .seealso: ISLocalToGlobalMappingCreate(), ISLocalToGlobalMappingApply(), ISLocalToGlobalMappingGetIndices() 150486994e45SJed Brown @*/ 15057087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingRestoreIndices(ISLocalToGlobalMapping ltog,const PetscInt **array) 150686994e45SJed Brown { 150786994e45SJed Brown PetscFunctionBegin; 150886994e45SJed Brown PetscValidHeaderSpecific(ltog,IS_LTOGM_CLASSID,1); 150986994e45SJed Brown PetscValidPointer(array,2); 151045b6f7e9SBarry Smith if (ltog->bs == 1 && *array != ltog->indices) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_BADPTR,"Trying to return mismatched pointer"); 151145b6f7e9SBarry Smith 151245b6f7e9SBarry Smith if (ltog->bs > 1) { 151345b6f7e9SBarry Smith PetscErrorCode ierr; 151445b6f7e9SBarry Smith ierr = PetscFree(*(void**)array);CHKERRQ(ierr); 151545b6f7e9SBarry Smith } 151645b6f7e9SBarry Smith PetscFunctionReturn(0); 151745b6f7e9SBarry Smith } 151845b6f7e9SBarry Smith 151945b6f7e9SBarry Smith /*@C 152045b6f7e9SBarry Smith ISLocalToGlobalMappingGetBlockIndices - Get global indices for every local block 152145b6f7e9SBarry Smith 152245b6f7e9SBarry Smith Not Collective 152345b6f7e9SBarry Smith 152445b6f7e9SBarry Smith Input Arguments: 152545b6f7e9SBarry Smith . ltog - local to global mapping 152645b6f7e9SBarry Smith 152745b6f7e9SBarry Smith Output Arguments: 152845b6f7e9SBarry Smith . array - array of indices 152945b6f7e9SBarry Smith 153045b6f7e9SBarry Smith Level: advanced 153145b6f7e9SBarry Smith 153245b6f7e9SBarry Smith .seealso: ISLocalToGlobalMappingCreate(), ISLocalToGlobalMappingApply(), ISLocalToGlobalMappingRestoreBlockIndices() 153345b6f7e9SBarry Smith @*/ 153445b6f7e9SBarry Smith PetscErrorCode ISLocalToGlobalMappingGetBlockIndices(ISLocalToGlobalMapping ltog,const PetscInt **array) 153545b6f7e9SBarry Smith { 153645b6f7e9SBarry Smith PetscFunctionBegin; 153745b6f7e9SBarry Smith PetscValidHeaderSpecific(ltog,IS_LTOGM_CLASSID,1); 153845b6f7e9SBarry Smith PetscValidPointer(array,2); 153945b6f7e9SBarry Smith *array = ltog->indices; 154045b6f7e9SBarry Smith PetscFunctionReturn(0); 154145b6f7e9SBarry Smith } 154245b6f7e9SBarry Smith 154345b6f7e9SBarry Smith /*@C 154445b6f7e9SBarry Smith ISLocalToGlobalMappingRestoreBlockIndices - Restore indices obtained with ISLocalToGlobalMappingGetBlockIndices() 154545b6f7e9SBarry Smith 154645b6f7e9SBarry Smith Not Collective 154745b6f7e9SBarry Smith 154845b6f7e9SBarry Smith Input Arguments: 154945b6f7e9SBarry Smith + ltog - local to global mapping 155045b6f7e9SBarry Smith - array - array of indices 155145b6f7e9SBarry Smith 155245b6f7e9SBarry Smith Level: advanced 155345b6f7e9SBarry Smith 155445b6f7e9SBarry Smith .seealso: ISLocalToGlobalMappingCreate(), ISLocalToGlobalMappingApply(), ISLocalToGlobalMappingGetIndices() 155545b6f7e9SBarry Smith @*/ 155645b6f7e9SBarry Smith PetscErrorCode ISLocalToGlobalMappingRestoreBlockIndices(ISLocalToGlobalMapping ltog,const PetscInt **array) 155745b6f7e9SBarry Smith { 155845b6f7e9SBarry Smith PetscFunctionBegin; 155945b6f7e9SBarry Smith PetscValidHeaderSpecific(ltog,IS_LTOGM_CLASSID,1); 156045b6f7e9SBarry Smith PetscValidPointer(array,2); 156186994e45SJed Brown if (*array != ltog->indices) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_BADPTR,"Trying to return mismatched pointer"); 15620298fd71SBarry Smith *array = NULL; 156386994e45SJed Brown PetscFunctionReturn(0); 156486994e45SJed Brown } 1565f7efa3c7SJed Brown 1566f7efa3c7SJed Brown /*@C 1567f7efa3c7SJed Brown ISLocalToGlobalMappingConcatenate - Create a new mapping that concatenates a list of mappings 1568f7efa3c7SJed Brown 1569f7efa3c7SJed Brown Not Collective 1570f7efa3c7SJed Brown 1571f7efa3c7SJed Brown Input Arguments: 1572f7efa3c7SJed Brown + comm - communicator for the new mapping, must contain the communicator of every mapping to concatenate 1573f7efa3c7SJed Brown . n - number of mappings to concatenate 1574f7efa3c7SJed Brown - ltogs - local to global mappings 1575f7efa3c7SJed Brown 1576f7efa3c7SJed Brown Output Arguments: 1577f7efa3c7SJed Brown . ltogcat - new mapping 1578f7efa3c7SJed Brown 15799d90f715SBarry Smith Note: this currently always returns a mapping with block size of 1 15809d90f715SBarry Smith 15819d90f715SBarry Smith Developer Note: If all the input mapping have the same block size we could easily handle that as a special case 15829d90f715SBarry Smith 1583f7efa3c7SJed Brown Level: advanced 1584f7efa3c7SJed Brown 1585f7efa3c7SJed Brown .seealso: ISLocalToGlobalMappingCreate() 1586f7efa3c7SJed Brown @*/ 1587f7efa3c7SJed Brown PetscErrorCode ISLocalToGlobalMappingConcatenate(MPI_Comm comm,PetscInt n,const ISLocalToGlobalMapping ltogs[],ISLocalToGlobalMapping *ltogcat) 1588f7efa3c7SJed Brown { 1589f7efa3c7SJed Brown PetscInt i,cnt,m,*idx; 1590f7efa3c7SJed Brown PetscErrorCode ierr; 1591f7efa3c7SJed Brown 1592f7efa3c7SJed Brown PetscFunctionBegin; 1593f7efa3c7SJed Brown if (n < 0) SETERRQ1(comm,PETSC_ERR_ARG_OUTOFRANGE,"Must have a non-negative number of mappings, given %D",n); 1594f7efa3c7SJed Brown if (n > 0) PetscValidPointer(ltogs,3); 1595f7efa3c7SJed Brown for (i=0; i<n; i++) PetscValidHeaderSpecific(ltogs[i],IS_LTOGM_CLASSID,3); 1596f7efa3c7SJed Brown PetscValidPointer(ltogcat,4); 1597f7efa3c7SJed Brown for (cnt=0,i=0; i<n; i++) { 1598f7efa3c7SJed Brown ierr = ISLocalToGlobalMappingGetSize(ltogs[i],&m);CHKERRQ(ierr); 1599f7efa3c7SJed Brown cnt += m; 1600f7efa3c7SJed Brown } 1601785e854fSJed Brown ierr = PetscMalloc1(cnt,&idx);CHKERRQ(ierr); 1602f7efa3c7SJed Brown for (cnt=0,i=0; i<n; i++) { 1603f7efa3c7SJed Brown const PetscInt *subidx; 1604f7efa3c7SJed Brown ierr = ISLocalToGlobalMappingGetSize(ltogs[i],&m);CHKERRQ(ierr); 1605f7efa3c7SJed Brown ierr = ISLocalToGlobalMappingGetIndices(ltogs[i],&subidx);CHKERRQ(ierr); 1606f7efa3c7SJed Brown ierr = PetscMemcpy(&idx[cnt],subidx,m*sizeof(PetscInt));CHKERRQ(ierr); 1607f7efa3c7SJed Brown ierr = ISLocalToGlobalMappingRestoreIndices(ltogs[i],&subidx);CHKERRQ(ierr); 1608f7efa3c7SJed Brown cnt += m; 1609f7efa3c7SJed Brown } 1610f0413b6fSBarry Smith ierr = ISLocalToGlobalMappingCreate(comm,1,cnt,idx,PETSC_OWN_POINTER,ltogcat);CHKERRQ(ierr); 1611f7efa3c7SJed Brown PetscFunctionReturn(0); 1612f7efa3c7SJed Brown } 161304a59952SBarry Smith 1614413f72f0SBarry Smith /*MC 1615413f72f0SBarry Smith ISLOCALTOGLOBALMAPPINGBASIC - basic implementation of the ISLocalToGlobalMapping object. When ISGlobalToLocalMappingApply() is 1616413f72f0SBarry Smith used this is good for only small and moderate size problems. 1617413f72f0SBarry Smith 1618413f72f0SBarry Smith Options Database Keys: 1619413f72f0SBarry Smith + -islocaltoglobalmapping_type basic - select this method 1620413f72f0SBarry Smith 1621413f72f0SBarry Smith Level: beginner 1622413f72f0SBarry Smith 1623413f72f0SBarry Smith .seealso: ISLocalToGlobalMappingCreate(), ISLocalToGlobalMappingSetType(), ISLOCALTOGLOBALMAPPINGHASH 1624413f72f0SBarry Smith M*/ 1625413f72f0SBarry Smith PETSC_EXTERN PetscErrorCode ISLocalToGlobalMappingCreate_Basic(ISLocalToGlobalMapping ltog) 1626413f72f0SBarry Smith { 1627413f72f0SBarry Smith PetscFunctionBegin; 1628413f72f0SBarry Smith ltog->ops->globaltolocalmappingapply = ISGlobalToLocalMappingApply_Basic; 1629413f72f0SBarry Smith ltog->ops->globaltolocalmappingsetup = ISGlobalToLocalMappingSetUp_Basic; 1630413f72f0SBarry Smith ltog->ops->globaltolocalmappingapplyblock = ISGlobalToLocalMappingApplyBlock_Basic; 1631413f72f0SBarry Smith ltog->ops->destroy = ISLocalToGlobalMappingDestroy_Basic; 1632413f72f0SBarry Smith PetscFunctionReturn(0); 1633413f72f0SBarry Smith } 1634413f72f0SBarry Smith 1635413f72f0SBarry Smith /*MC 1636413f72f0SBarry Smith ISLOCALTOGLOBALMAPPINGHASH - hash implementation of the ISLocalToGlobalMapping object. When ISGlobalToLocalMappingApply() is 1637ed56e8eaSBarry Smith used this is good for large memory problems. 1638413f72f0SBarry Smith 1639413f72f0SBarry Smith Options Database Keys: 1640413f72f0SBarry Smith + -islocaltoglobalmapping_type hash - select this method 1641413f72f0SBarry Smith 1642ed56e8eaSBarry Smith 1643ed56e8eaSBarry Smith Notes: This is selected automatically for large problems if the user does not set the type. 1644ed56e8eaSBarry Smith 1645413f72f0SBarry Smith Level: beginner 1646413f72f0SBarry Smith 1647413f72f0SBarry Smith .seealso: ISLocalToGlobalMappingCreate(), ISLocalToGlobalMappingSetType(), ISLOCALTOGLOBALMAPPINGHASH 1648413f72f0SBarry Smith M*/ 1649413f72f0SBarry Smith PETSC_EXTERN PetscErrorCode ISLocalToGlobalMappingCreate_Hash(ISLocalToGlobalMapping ltog) 1650413f72f0SBarry Smith { 1651413f72f0SBarry Smith PetscFunctionBegin; 1652413f72f0SBarry Smith ltog->ops->globaltolocalmappingapply = ISGlobalToLocalMappingApply_Hash; 1653413f72f0SBarry Smith ltog->ops->globaltolocalmappingsetup = ISGlobalToLocalMappingSetUp_Hash; 1654413f72f0SBarry Smith ltog->ops->globaltolocalmappingapplyblock = ISGlobalToLocalMappingApplyBlock_Hash; 1655413f72f0SBarry Smith ltog->ops->destroy = ISLocalToGlobalMappingDestroy_Hash; 1656413f72f0SBarry Smith PetscFunctionReturn(0); 1657413f72f0SBarry Smith } 1658413f72f0SBarry Smith 1659413f72f0SBarry Smith 1660413f72f0SBarry Smith /*@C 1661413f72f0SBarry Smith ISLocalToGlobalMappingRegister - Adds a method for applying a global to local mapping with an ISLocalToGlobalMapping 1662413f72f0SBarry Smith 1663413f72f0SBarry Smith Not Collective 1664413f72f0SBarry Smith 1665413f72f0SBarry Smith Input Parameters: 1666413f72f0SBarry Smith + sname - name of a new method 1667413f72f0SBarry Smith - routine_create - routine to create method context 1668413f72f0SBarry Smith 1669413f72f0SBarry Smith Notes: 1670ed56e8eaSBarry Smith ISLocalToGlobalMappingRegister() may be called multiple times to add several user-defined mappings. 1671413f72f0SBarry Smith 1672413f72f0SBarry Smith Sample usage: 1673413f72f0SBarry Smith .vb 1674413f72f0SBarry Smith ISLocalToGlobalMappingRegister("my_mapper",MyCreate); 1675413f72f0SBarry Smith .ve 1676413f72f0SBarry Smith 1677ed56e8eaSBarry Smith Then, your mapping can be chosen with the procedural interface via 1678413f72f0SBarry Smith $ ISLocalToGlobalMappingSetType(ltog,"my_mapper") 1679413f72f0SBarry Smith or at runtime via the option 1680ed56e8eaSBarry Smith $ -islocaltoglobalmapping_type my_mapper 1681413f72f0SBarry Smith 1682413f72f0SBarry Smith Level: advanced 1683413f72f0SBarry Smith 1684413f72f0SBarry Smith .keywords: ISLocalToGlobalMappingType, register 1685413f72f0SBarry Smith 1686413f72f0SBarry Smith .seealso: ISLocalToGlobalMappingRegisterAll(), ISLocalToGlobalMappingRegisterDestroy(), ISLOCALTOGLOBALMAPPINGBASIC, ISLOCALTOGLOBALMAPPINGHASH 1687413f72f0SBarry Smith 1688413f72f0SBarry Smith @*/ 1689413f72f0SBarry Smith PetscErrorCode ISLocalToGlobalMappingRegister(const char sname[],PetscErrorCode (*function)(ISLocalToGlobalMapping)) 1690413f72f0SBarry Smith { 1691413f72f0SBarry Smith PetscErrorCode ierr; 1692413f72f0SBarry Smith 1693413f72f0SBarry Smith PetscFunctionBegin; 1694413f72f0SBarry Smith ierr = PetscFunctionListAdd(&ISLocalToGlobalMappingList,sname,function);CHKERRQ(ierr); 1695413f72f0SBarry Smith PetscFunctionReturn(0); 1696413f72f0SBarry Smith } 1697413f72f0SBarry Smith 1698413f72f0SBarry Smith /*@C 1699ed56e8eaSBarry Smith ISLocalToGlobalMappingSetType - Builds ISLocalToGlobalMapping for a particular global to local mapping approach. 1700413f72f0SBarry Smith 1701413f72f0SBarry Smith Logically Collective on ISLocalToGlobalMapping 1702413f72f0SBarry Smith 1703413f72f0SBarry Smith Input Parameters: 1704413f72f0SBarry Smith + ltog - the ISLocalToGlobalMapping object 1705413f72f0SBarry Smith - type - a known method 1706413f72f0SBarry Smith 1707413f72f0SBarry Smith Options Database Key: 1708ed56e8eaSBarry Smith . -islocaltoglobalmapping_type <method> - Sets the method; use -help for a list 1709413f72f0SBarry Smith of available methods (for instance, basic or hash) 1710413f72f0SBarry Smith 1711413f72f0SBarry Smith Notes: 1712413f72f0SBarry Smith See "petsc/include/petscis.h" for available methods 1713413f72f0SBarry Smith 1714413f72f0SBarry Smith Normally, it is best to use the ISLocalToGlobalMappingSetFromOptions() command and 1715413f72f0SBarry Smith then set the ISLocalToGlobalMapping type from the options database rather than by using 1716413f72f0SBarry Smith this routine. 1717413f72f0SBarry Smith 1718413f72f0SBarry Smith Level: intermediate 1719413f72f0SBarry Smith 1720413f72f0SBarry Smith Developer Note: ISLocalToGlobalMappingRegister() is used to add new types to ISLocalToGlobalMappingList from which they 1721413f72f0SBarry Smith are accessed by ISLocalToGlobalMappingSetType(). 1722413f72f0SBarry Smith 1723413f72f0SBarry Smith .keywords: ISLocalToGlobalMapping, set, method 1724413f72f0SBarry Smith 1725413f72f0SBarry Smith .seealso: PCSetType(), ISLocalToGlobalMappingType, ISLocalToGlobalMappingRegister(), ISLocalToGlobalMappingCreate() 1726413f72f0SBarry Smith 1727413f72f0SBarry Smith @*/ 1728413f72f0SBarry Smith PetscErrorCode ISLocalToGlobalMappingSetType(ISLocalToGlobalMapping ltog, ISLocalToGlobalMappingType type) 1729413f72f0SBarry Smith { 1730413f72f0SBarry Smith PetscErrorCode ierr,(*r)(ISLocalToGlobalMapping); 1731413f72f0SBarry Smith PetscBool match; 1732413f72f0SBarry Smith 1733413f72f0SBarry Smith PetscFunctionBegin; 1734413f72f0SBarry Smith PetscValidHeaderSpecific(ltog,IS_LTOGM_CLASSID,1); 1735413f72f0SBarry Smith PetscValidCharPointer(type,2); 1736413f72f0SBarry Smith 1737413f72f0SBarry Smith ierr = PetscObjectTypeCompare((PetscObject)ltog,type,&match);CHKERRQ(ierr); 1738413f72f0SBarry Smith if (match) PetscFunctionReturn(0); 1739413f72f0SBarry Smith 1740413f72f0SBarry Smith ierr = PetscFunctionListFind(ISLocalToGlobalMappingList,type,&r);CHKERRQ(ierr); 1741413f72f0SBarry Smith if (!r) SETERRQ1(PetscObjectComm((PetscObject)ltog),PETSC_ERR_ARG_UNKNOWN_TYPE,"Unable to find requested ISLocalToGlobalMapping type %s",type); 1742413f72f0SBarry Smith /* Destroy the previous private LTOG context */ 1743413f72f0SBarry Smith if (ltog->ops->destroy) { 1744413f72f0SBarry Smith ierr = (*ltog->ops->destroy)(ltog);CHKERRQ(ierr); 1745413f72f0SBarry Smith ltog->ops->destroy = NULL; 1746413f72f0SBarry Smith } 1747413f72f0SBarry Smith ierr = PetscObjectChangeTypeName((PetscObject)ltog,type);CHKERRQ(ierr); 1748413f72f0SBarry Smith ierr = (*r)(ltog);CHKERRQ(ierr); 1749413f72f0SBarry Smith PetscFunctionReturn(0); 1750413f72f0SBarry Smith } 1751413f72f0SBarry Smith 1752413f72f0SBarry Smith PetscBool ISLocalToGlobalMappingRegisterAllCalled = PETSC_FALSE; 1753413f72f0SBarry Smith 1754413f72f0SBarry Smith /*@C 1755413f72f0SBarry Smith ISLocalToGlobalMappingRegisterAll - Registers all of the local to global mapping components in the IS package. 1756413f72f0SBarry Smith 1757413f72f0SBarry Smith Not Collective 1758413f72f0SBarry Smith 1759413f72f0SBarry Smith Level: advanced 1760413f72f0SBarry Smith 1761413f72f0SBarry Smith .keywords: IS, register, all 1762413f72f0SBarry Smith .seealso: ISRegister(), ISLocalToGlobalRegister() 1763413f72f0SBarry Smith @*/ 1764413f72f0SBarry Smith PetscErrorCode ISLocalToGlobalMappingRegisterAll(void) 1765413f72f0SBarry Smith { 1766413f72f0SBarry Smith PetscErrorCode ierr; 1767413f72f0SBarry Smith 1768413f72f0SBarry Smith PetscFunctionBegin; 1769413f72f0SBarry Smith if (ISLocalToGlobalMappingRegisterAllCalled) PetscFunctionReturn(0); 1770413f72f0SBarry Smith ISLocalToGlobalMappingRegisterAllCalled = PETSC_TRUE; 1771413f72f0SBarry Smith 1772413f72f0SBarry Smith ierr = ISLocalToGlobalMappingRegister(ISLOCALTOGLOBALMAPPINGBASIC, ISLocalToGlobalMappingCreate_Basic);CHKERRQ(ierr); 1773413f72f0SBarry Smith ierr = ISLocalToGlobalMappingRegister(ISLOCALTOGLOBALMAPPINGHASH, ISLocalToGlobalMappingCreate_Hash);CHKERRQ(ierr); 1774413f72f0SBarry Smith PetscFunctionReturn(0); 1775413f72f0SBarry Smith } 177604a59952SBarry Smith 1777