12362add9SBarry Smith 2b45d2f2cSJed Brown #include <petsc-private/isimpl.h> /*I "petscis.h" I*/ 32362add9SBarry Smith 47087cfbeSBarry Smith PetscClassId IS_LTOGM_CLASSID; 58e58c17dSMatthew Knepley 64a2ae208SSatish Balay #undef __FUNCT__ 74a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingGetSize" 83b9aefa3SBarry Smith /*@C 93b9aefa3SBarry Smith ISLocalToGlobalMappingGetSize - Gets the local size of a local to global mapping. 103b9aefa3SBarry Smith 113b9aefa3SBarry Smith Not Collective 123b9aefa3SBarry Smith 133b9aefa3SBarry Smith Input Parameter: 143b9aefa3SBarry Smith . ltog - local to global mapping 153b9aefa3SBarry Smith 163b9aefa3SBarry Smith Output Parameter: 173b9aefa3SBarry Smith . n - the number of entries in the local mapping 183b9aefa3SBarry Smith 193b9aefa3SBarry Smith Level: advanced 203b9aefa3SBarry Smith 21273d9f13SBarry Smith Concepts: mapping^local to global 223b9aefa3SBarry Smith 233b9aefa3SBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreate() 243b9aefa3SBarry Smith @*/ 257087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingGetSize(ISLocalToGlobalMapping mapping,PetscInt *n) 263b9aefa3SBarry Smith { 273b9aefa3SBarry Smith PetscFunctionBegin; 280700a824SBarry Smith PetscValidHeaderSpecific(mapping,IS_LTOGM_CLASSID,1); 294482741eSBarry Smith PetscValidIntPointer(n,2); 303b9aefa3SBarry Smith *n = mapping->n; 313b9aefa3SBarry Smith PetscFunctionReturn(0); 323b9aefa3SBarry Smith } 333b9aefa3SBarry Smith 344a2ae208SSatish Balay #undef __FUNCT__ 354a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingView" 365a5d4f66SBarry Smith /*@C 375a5d4f66SBarry Smith ISLocalToGlobalMappingView - View a local to global mapping 385a5d4f66SBarry Smith 39b9cd556bSLois Curfman McInnes Not Collective 40b9cd556bSLois Curfman McInnes 415a5d4f66SBarry Smith Input Parameters: 423b9aefa3SBarry Smith + ltog - local to global mapping 433b9aefa3SBarry Smith - viewer - viewer 445a5d4f66SBarry Smith 45a997ad1aSLois Curfman McInnes Level: advanced 46a997ad1aSLois Curfman McInnes 47273d9f13SBarry Smith Concepts: mapping^local to global 485a5d4f66SBarry Smith 495a5d4f66SBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreate() 505a5d4f66SBarry Smith @*/ 517087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingView(ISLocalToGlobalMapping mapping,PetscViewer viewer) 525a5d4f66SBarry Smith { 5332dcc486SBarry Smith PetscInt i; 5432dcc486SBarry Smith PetscMPIInt rank; 55ace3abfcSBarry Smith PetscBool iascii; 566849ba73SBarry Smith PetscErrorCode ierr; 575a5d4f66SBarry Smith 585a5d4f66SBarry Smith PetscFunctionBegin; 590700a824SBarry Smith PetscValidHeaderSpecific(mapping,IS_LTOGM_CLASSID,1); 603050cee2SBarry Smith if (!viewer) { 61*ce94432eSBarry Smith ierr = PetscViewerASCIIGetStdout(PetscObjectComm((PetscObject)mapping),&viewer);CHKERRQ(ierr); 623050cee2SBarry Smith } 630700a824SBarry Smith PetscValidHeaderSpecific(viewer,PETSC_VIEWER_CLASSID,2); 645a5d4f66SBarry Smith 65*ce94432eSBarry Smith ierr = MPI_Comm_rank(PetscObjectComm((PetscObject)mapping),&rank);CHKERRQ(ierr); 66251f4c67SDmitry Karpeev ierr = PetscObjectTypeCompare((PetscObject)viewer,PETSCVIEWERASCII,&iascii);CHKERRQ(ierr); 6732077d6dSBarry Smith if (iascii) { 687b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_TRUE);CHKERRQ(ierr); 695a5d4f66SBarry Smith for (i=0; i<mapping->n; i++) { 70b0a32e0cSBarry Smith ierr = PetscViewerASCIISynchronizedPrintf(viewer,"[%d] %d %d\n",rank,i,mapping->indices[i]);CHKERRQ(ierr); 716831982aSBarry Smith } 72b0a32e0cSBarry Smith ierr = PetscViewerFlush(viewer);CHKERRQ(ierr); 737b23a99aSBarry Smith ierr = PetscViewerASCIISynchronizedAllow(viewer,PETSC_FALSE);CHKERRQ(ierr); 747b23a99aSBarry Smith } else SETERRQ1(PETSC_COMM_SELF,PETSC_ERR_SUP,"Viewer type %s not supported for ISLocalToGlobalMapping",((PetscObject)viewer)->type_name); 755a5d4f66SBarry Smith PetscFunctionReturn(0); 765a5d4f66SBarry Smith } 775a5d4f66SBarry Smith 784a2ae208SSatish Balay #undef __FUNCT__ 794a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingCreateIS" 801f428162SBarry Smith /*@ 812bdab257SBarry Smith ISLocalToGlobalMappingCreateIS - Creates a mapping between a local (0 to n) 822bdab257SBarry Smith ordering and a global parallel ordering. 832bdab257SBarry Smith 840f5bd95cSBarry Smith Not collective 85b9cd556bSLois Curfman McInnes 86a997ad1aSLois Curfman McInnes Input Parameter: 878c03b21aSDmitry Karpeev . is - index set containing the global numbers for each local number 882bdab257SBarry Smith 89a997ad1aSLois Curfman McInnes Output Parameter: 902bdab257SBarry Smith . mapping - new mapping data structure 912bdab257SBarry Smith 92a997ad1aSLois Curfman McInnes Level: advanced 93a997ad1aSLois Curfman McInnes 94273d9f13SBarry Smith Concepts: mapping^local to global 952bdab257SBarry Smith 962bdab257SBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreate() 972bdab257SBarry Smith @*/ 987087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingCreateIS(IS is,ISLocalToGlobalMapping *mapping) 992bdab257SBarry Smith { 1006849ba73SBarry Smith PetscErrorCode ierr; 1015d0c19d7SBarry Smith PetscInt n; 1025d0c19d7SBarry Smith const PetscInt *indices; 1032bdab257SBarry Smith MPI_Comm comm; 1043a40ed3dSBarry Smith 1053a40ed3dSBarry Smith PetscFunctionBegin; 1060700a824SBarry Smith PetscValidHeaderSpecific(is,IS_CLASSID,1); 1074482741eSBarry Smith PetscValidPointer(mapping,2); 1082bdab257SBarry Smith 1092bdab257SBarry Smith ierr = PetscObjectGetComm((PetscObject)is,&comm);CHKERRQ(ierr); 1103b9aefa3SBarry Smith ierr = ISGetLocalSize(is,&n);CHKERRQ(ierr); 1112bdab257SBarry Smith ierr = ISGetIndices(is,&indices);CHKERRQ(ierr); 112d5ad8652SBarry Smith ierr = ISLocalToGlobalMappingCreate(comm,n,indices,PETSC_COPY_VALUES,mapping);CHKERRQ(ierr); 1132bdab257SBarry Smith ierr = ISRestoreIndices(is,&indices);CHKERRQ(ierr); 1143a40ed3dSBarry Smith PetscFunctionReturn(0); 1152bdab257SBarry Smith } 1165a5d4f66SBarry Smith 117a4d96a55SJed Brown #undef __FUNCT__ 118a4d96a55SJed Brown #define __FUNCT__ "ISLocalToGlobalMappingCreateSF" 119a4d96a55SJed Brown /*@C 120a4d96a55SJed Brown ISLocalToGlobalMappingCreateSF - Creates a mapping between a local (0 to n) 121a4d96a55SJed Brown ordering and a global parallel ordering. 122a4d96a55SJed Brown 123a4d96a55SJed Brown Collective 124a4d96a55SJed Brown 125a4d96a55SJed Brown Input Parameter: 126a4d96a55SJed Brown + sf - star forest mapping contiguous local indices to (rank, offset) 127a4d96a55SJed Brown - start - first global index on this process 128a4d96a55SJed Brown 129a4d96a55SJed Brown Output Parameter: 130a4d96a55SJed Brown . mapping - new mapping data structure 131a4d96a55SJed Brown 132a4d96a55SJed Brown Level: advanced 133a4d96a55SJed Brown 134a4d96a55SJed Brown Concepts: mapping^local to global 135a4d96a55SJed Brown 136a4d96a55SJed Brown .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreate(), ISLocalToGlobalMappingCreateIS() 137a4d96a55SJed Brown @*/ 138a4d96a55SJed Brown PetscErrorCode ISLocalToGlobalMappingCreateSF(PetscSF sf,PetscInt start,ISLocalToGlobalMapping *mapping) 139a4d96a55SJed Brown { 140a4d96a55SJed Brown PetscErrorCode ierr; 141a4d96a55SJed Brown PetscInt i,maxlocal,nroots,nleaves,*globals,*ltog; 142a4d96a55SJed Brown const PetscInt *ilocal; 143a4d96a55SJed Brown MPI_Comm comm; 144a4d96a55SJed Brown 145a4d96a55SJed Brown PetscFunctionBegin; 146a4d96a55SJed Brown PetscValidHeaderSpecific(sf,PETSCSF_CLASSID,1); 147a4d96a55SJed Brown PetscValidPointer(mapping,3); 148a4d96a55SJed Brown 149a4d96a55SJed Brown ierr = PetscObjectGetComm((PetscObject)sf,&comm);CHKERRQ(ierr); 1500298fd71SBarry Smith ierr = PetscSFGetGraph(sf,&nroots,&nleaves,&ilocal,NULL);CHKERRQ(ierr); 151f6e5521dSKarl Rupp if (ilocal) { 152f6e5521dSKarl Rupp for (i=0,maxlocal=0; i<nleaves; i++) maxlocal = PetscMax(maxlocal,ilocal[i]+1); 153f6e5521dSKarl Rupp } 154a4d96a55SJed Brown else maxlocal = nleaves; 155a4d96a55SJed Brown ierr = PetscMalloc(nroots*sizeof(PetscInt),&globals);CHKERRQ(ierr); 156a4d96a55SJed Brown ierr = PetscMalloc(maxlocal*sizeof(PetscInt),<og);CHKERRQ(ierr); 157a4d96a55SJed Brown for (i=0; i<nroots; i++) globals[i] = start + i; 158a4d96a55SJed Brown for (i=0; i<maxlocal; i++) ltog[i] = -1; 159a4d96a55SJed Brown ierr = PetscSFBcastBegin(sf,MPIU_INT,globals,ltog);CHKERRQ(ierr); 160a4d96a55SJed Brown ierr = PetscSFBcastEnd(sf,MPIU_INT,globals,ltog);CHKERRQ(ierr); 161a4d96a55SJed Brown ierr = ISLocalToGlobalMappingCreate(comm,maxlocal,ltog,PETSC_OWN_POINTER,mapping);CHKERRQ(ierr); 162a4d96a55SJed Brown ierr = PetscFree(globals);CHKERRQ(ierr); 163a4d96a55SJed Brown PetscFunctionReturn(0); 164a4d96a55SJed Brown } 165b46b645bSBarry Smith 1664a2ae208SSatish Balay #undef __FUNCT__ 1674a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingCreate" 168ba5bb76aSSatish Balay /*@ 16990f02eecSBarry Smith ISLocalToGlobalMappingCreate - Creates a mapping between a local (0 to n) 17090f02eecSBarry Smith ordering and a global parallel ordering. 1712362add9SBarry Smith 17289d82c54SBarry Smith Not Collective, but communicator may have more than one process 173b9cd556bSLois Curfman McInnes 1742362add9SBarry Smith Input Parameters: 17589d82c54SBarry Smith + comm - MPI communicator 17690f02eecSBarry Smith . n - the number of local elements 1779669e4d8SBarry Smith . indices - the global index for each local element, these do not need to be in increasing order (sorted) 178d5ad8652SBarry Smith - mode - see PetscCopyMode 1792362add9SBarry Smith 180a997ad1aSLois Curfman McInnes Output Parameter: 18190f02eecSBarry Smith . mapping - new mapping data structure 1822362add9SBarry Smith 183a997ad1aSLois Curfman McInnes Level: advanced 184a997ad1aSLois Curfman McInnes 185273d9f13SBarry Smith Concepts: mapping^local to global 1862362add9SBarry Smith 187d5ad8652SBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreateIS() 1882362add9SBarry Smith @*/ 1897087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingCreate(MPI_Comm cm,PetscInt n,const PetscInt indices[],PetscCopyMode mode,ISLocalToGlobalMapping *mapping) 1902362add9SBarry Smith { 1916849ba73SBarry Smith PetscErrorCode ierr; 19232dcc486SBarry Smith PetscInt *in; 193b46b645bSBarry Smith 194b46b645bSBarry Smith PetscFunctionBegin; 19573911063SBarry Smith if (n) PetscValidIntPointer(indices,3); 1964482741eSBarry Smith PetscValidPointer(mapping,4); 197b46b645bSBarry Smith 1980298fd71SBarry Smith *mapping = NULL; 199519f805aSKarl Rupp #if !defined(PETSC_USE_DYNAMIC_LIBRARIES) 2000298fd71SBarry Smith ierr = ISInitializePackage(NULL);CHKERRQ(ierr); 2018e58c17dSMatthew Knepley #endif 2022362add9SBarry Smith 20367c2884eSBarry Smith ierr = PetscHeaderCreate(*mapping,_p_ISLocalToGlobalMapping,int,IS_LTOGM_CLASSID,"ISLocalToGlobalMapping","Local to global mapping","IS", 20452e6d16bSBarry Smith cm,ISLocalToGlobalMappingDestroy,ISLocalToGlobalMappingView);CHKERRQ(ierr); 205d4bb536fSBarry Smith (*mapping)->n = n; 206d4bb536fSBarry Smith /* 207d4bb536fSBarry Smith Do not create the global to local mapping. This is only created if 208d4bb536fSBarry Smith ISGlobalToLocalMapping() is called 209d4bb536fSBarry Smith */ 210d4bb536fSBarry Smith (*mapping)->globals = 0; 211d5ad8652SBarry Smith if (mode == PETSC_COPY_VALUES) { 212d5ad8652SBarry Smith ierr = PetscMalloc(n*sizeof(PetscInt),&in);CHKERRQ(ierr); 213d5ad8652SBarry Smith ierr = PetscMemcpy(in,indices,n*sizeof(PetscInt));CHKERRQ(ierr); 214d5ad8652SBarry Smith ierr = PetscLogObjectMemory(*mapping,n*sizeof(PetscInt));CHKERRQ(ierr); 215d5ad8652SBarry Smith (*mapping)->indices = in; 216f6e5521dSKarl Rupp } else if (mode == PETSC_OWN_POINTER) (*mapping)->indices = (PetscInt*)indices; 217f6e5521dSKarl Rupp else SETERRQ(cm,PETSC_ERR_SUP,"Cannot currently use PETSC_USE_POINTER"); 2183a40ed3dSBarry Smith PetscFunctionReturn(0); 2192362add9SBarry Smith } 2202362add9SBarry Smith 2214a2ae208SSatish Balay #undef __FUNCT__ 2224a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingBlock" 223bce096a4SSatish Balay /*@ 224323b833fSBarry Smith ISLocalToGlobalMappingBlock - Creates a blocked index version of an 225323b833fSBarry Smith ISLocalToGlobalMapping that is appropriate for MatSetLocalToGlobalMappingBlock() 226323b833fSBarry Smith and VecSetLocalToGlobalMappingBlock(). 227323b833fSBarry Smith 228323b833fSBarry Smith Not Collective, but communicator may have more than one process 229323b833fSBarry Smith 230323b833fSBarry Smith Input Parameters: 231323b833fSBarry Smith + inmap - original point-wise mapping 232323b833fSBarry Smith - bs - block size 233323b833fSBarry Smith 234323b833fSBarry Smith Output Parameter: 23569eb54c3SBarry Smith . outmap - block based mapping; the indices are relative to BLOCKS, not individual vector or matrix entries. 236323b833fSBarry Smith 237323b833fSBarry Smith Level: advanced 238323b833fSBarry Smith 239323b833fSBarry Smith Concepts: mapping^local to global 240323b833fSBarry Smith 241323b833fSBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreate(), ISLocalToGlobalMappingCreateIS() 242323b833fSBarry Smith @*/ 2437087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingBlock(ISLocalToGlobalMapping inmap,PetscInt bs,ISLocalToGlobalMapping *outmap) 244323b833fSBarry Smith { 2456849ba73SBarry Smith PetscErrorCode ierr; 24632dcc486SBarry Smith PetscInt *ii,i,n; 247323b833fSBarry Smith 248323b833fSBarry Smith PetscFunctionBegin; 2490700a824SBarry Smith PetscValidHeaderSpecific(inmap,IS_LTOGM_CLASSID,1); 250b2beed0aSJed Brown PetscValidPointer(outmap,3); 251323b833fSBarry Smith if (bs > 1) { 252323b833fSBarry Smith n = inmap->n/bs; 253e32f2f54SBarry Smith if (n*bs != inmap->n) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_INCOMP,"Pointwise mapping length is not divisible by block size"); 25432dcc486SBarry Smith ierr = PetscMalloc(n*sizeof(PetscInt),&ii);CHKERRQ(ierr); 255f6e5521dSKarl Rupp for (i=0; i<n; i++) ii[i] = inmap->indices[bs*i]/bs; 256*ce94432eSBarry Smith ierr = ISLocalToGlobalMappingCreate(PetscObjectComm((PetscObject)inmap),n,ii,PETSC_OWN_POINTER,outmap);CHKERRQ(ierr); 257323b833fSBarry Smith } else { 258323b833fSBarry Smith ierr = PetscObjectReference((PetscObject)inmap);CHKERRQ(ierr); 259c3122656SLisandro Dalcin *outmap = inmap; 260323b833fSBarry Smith } 261323b833fSBarry Smith PetscFunctionReturn(0); 262323b833fSBarry Smith } 263323b833fSBarry Smith 2644a2ae208SSatish Balay #undef __FUNCT__ 2658ab951edSJed Brown #define __FUNCT__ "ISLocalToGlobalMappingUnBlock" 266b2beed0aSJed Brown /*@ 267b2beed0aSJed Brown ISLocalToGlobalMappingUnBlock - Creates a scalar index version of a blocked 268b2beed0aSJed Brown ISLocalToGlobalMapping 269b2beed0aSJed Brown 270b2beed0aSJed Brown Not Collective, but communicator may have more than one process 271b2beed0aSJed Brown 272b2beed0aSJed Brown Input Parameter: 273b2beed0aSJed Brown + inmap - block based mapping; the indices are relative to BLOCKS, not individual vector or matrix entries. 274b2beed0aSJed Brown - bs - block size 275b2beed0aSJed Brown 276b2beed0aSJed Brown Output Parameter: 277b2beed0aSJed Brown . outmap - pointwise mapping 278b2beed0aSJed Brown 279b2beed0aSJed Brown Level: advanced 280b2beed0aSJed Brown 281b2beed0aSJed Brown Concepts: mapping^local to global 282b2beed0aSJed Brown 283b2beed0aSJed Brown .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreate(), ISLocalToGlobalMappingBlock() 284b2beed0aSJed Brown @*/ 2857087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingUnBlock(ISLocalToGlobalMapping inmap,PetscInt bs,ISLocalToGlobalMapping *outmap) 286b2beed0aSJed Brown { 287b2beed0aSJed Brown PetscErrorCode ierr; 288b2beed0aSJed Brown PetscInt *ii,i,n; 289b2beed0aSJed Brown 290b2beed0aSJed Brown PetscFunctionBegin; 291b2beed0aSJed Brown PetscValidHeaderSpecific(inmap,IS_LTOGM_CLASSID,1); 292b2beed0aSJed Brown PetscValidPointer(outmap,2); 293b2beed0aSJed Brown if (bs > 1) { 294b2beed0aSJed Brown n = inmap->n*bs; 295b2beed0aSJed Brown ierr = PetscMalloc(n*sizeof(PetscInt),&ii);CHKERRQ(ierr); 296f6e5521dSKarl Rupp for (i=0; i<n; i++) ii[i] = inmap->indices[i/bs]*bs + (i%bs); 297*ce94432eSBarry Smith ierr = ISLocalToGlobalMappingCreate(PetscObjectComm((PetscObject)inmap),n,ii,PETSC_OWN_POINTER,outmap);CHKERRQ(ierr); 298b2beed0aSJed Brown } else { 299b2beed0aSJed Brown ierr = PetscObjectReference((PetscObject)inmap);CHKERRQ(ierr); 300b2beed0aSJed Brown *outmap = inmap; 301b2beed0aSJed Brown } 302b2beed0aSJed Brown PetscFunctionReturn(0); 303b2beed0aSJed Brown } 304b2beed0aSJed Brown 305b2beed0aSJed Brown #undef __FUNCT__ 3064a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingDestroy" 30790f02eecSBarry Smith /*@ 30890f02eecSBarry Smith ISLocalToGlobalMappingDestroy - Destroys a mapping between a local (0 to n) 30990f02eecSBarry Smith ordering and a global parallel ordering. 31090f02eecSBarry Smith 3110f5bd95cSBarry Smith Note Collective 312b9cd556bSLois Curfman McInnes 31390f02eecSBarry Smith Input Parameters: 31490f02eecSBarry Smith . mapping - mapping data structure 31590f02eecSBarry Smith 316a997ad1aSLois Curfman McInnes Level: advanced 317a997ad1aSLois Curfman McInnes 3183acfe500SLois Curfman McInnes .seealso: ISLocalToGlobalMappingCreate() 31990f02eecSBarry Smith @*/ 3206bf464f9SBarry Smith PetscErrorCode ISLocalToGlobalMappingDestroy(ISLocalToGlobalMapping *mapping) 32190f02eecSBarry Smith { 322dfbe8321SBarry Smith PetscErrorCode ierr; 3235fd66863SKarl Rupp 3243a40ed3dSBarry Smith PetscFunctionBegin; 3256bf464f9SBarry Smith if (!*mapping) PetscFunctionReturn(0); 3266bf464f9SBarry Smith PetscValidHeaderSpecific((*mapping),IS_LTOGM_CLASSID,1); 327997056adSBarry Smith if (--((PetscObject)(*mapping))->refct > 0) {*mapping = 0;PetscFunctionReturn(0);} 3286bf464f9SBarry Smith ierr = PetscFree((*mapping)->indices);CHKERRQ(ierr); 3296bf464f9SBarry Smith ierr = PetscFree((*mapping)->globals);CHKERRQ(ierr); 330d38fa0fbSBarry Smith ierr = PetscHeaderDestroy(mapping);CHKERRQ(ierr); 331992144d0SBarry Smith *mapping = 0; 3323a40ed3dSBarry Smith PetscFunctionReturn(0); 33390f02eecSBarry Smith } 33490f02eecSBarry Smith 3354a2ae208SSatish Balay #undef __FUNCT__ 3364a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingApplyIS" 33790f02eecSBarry Smith /*@ 3383acfe500SLois Curfman McInnes ISLocalToGlobalMappingApplyIS - Creates from an IS in the local numbering 3393acfe500SLois Curfman McInnes a new index set using the global numbering defined in an ISLocalToGlobalMapping 3403acfe500SLois Curfman McInnes context. 34190f02eecSBarry Smith 342b9cd556bSLois Curfman McInnes Not collective 343b9cd556bSLois Curfman McInnes 34490f02eecSBarry Smith Input Parameters: 345b9cd556bSLois Curfman McInnes + mapping - mapping between local and global numbering 346b9cd556bSLois Curfman McInnes - is - index set in local numbering 34790f02eecSBarry Smith 34890f02eecSBarry Smith Output Parameters: 34990f02eecSBarry Smith . newis - index set in global numbering 35090f02eecSBarry Smith 351a997ad1aSLois Curfman McInnes Level: advanced 352a997ad1aSLois Curfman McInnes 353273d9f13SBarry Smith Concepts: mapping^local to global 3543acfe500SLois Curfman McInnes 35590f02eecSBarry Smith .seealso: ISLocalToGlobalMappingApply(), ISLocalToGlobalMappingCreate(), 356d4bb536fSBarry Smith ISLocalToGlobalMappingDestroy(), ISGlobalToLocalMappingApply() 35790f02eecSBarry Smith @*/ 3587087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingApplyIS(ISLocalToGlobalMapping mapping,IS is,IS *newis) 35990f02eecSBarry Smith { 3606849ba73SBarry Smith PetscErrorCode ierr; 3615d0c19d7SBarry Smith PetscInt n,i,*idxmap,*idxout,Nmax = mapping->n; 3625d0c19d7SBarry Smith const PetscInt *idxin; 3633a40ed3dSBarry Smith 3643a40ed3dSBarry Smith PetscFunctionBegin; 3650700a824SBarry Smith PetscValidHeaderSpecific(mapping,IS_LTOGM_CLASSID,1); 3660700a824SBarry Smith PetscValidHeaderSpecific(is,IS_CLASSID,2); 3674482741eSBarry Smith PetscValidPointer(newis,3); 36890f02eecSBarry Smith 3693b9aefa3SBarry Smith ierr = ISGetLocalSize(is,&n);CHKERRQ(ierr); 37090f02eecSBarry Smith ierr = ISGetIndices(is,&idxin);CHKERRQ(ierr); 37190f02eecSBarry Smith idxmap = mapping->indices; 37290f02eecSBarry Smith 3737c334f02SBarry Smith ierr = PetscMalloc(n*sizeof(PetscInt),&idxout);CHKERRQ(ierr); 37490f02eecSBarry Smith for (i=0; i<n; i++) { 375e32f2f54SBarry Smith if (idxin[i] >= Nmax) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local index %d too large %d (max) at %d",idxin[i],Nmax-1,i); 37690f02eecSBarry Smith idxout[i] = idxmap[idxin[i]]; 37790f02eecSBarry Smith } 3783b9aefa3SBarry Smith ierr = ISRestoreIndices(is,&idxin);CHKERRQ(ierr); 37970b3c8c7SBarry Smith ierr = ISCreateGeneral(PETSC_COMM_SELF,n,idxout,PETSC_OWN_POINTER,newis);CHKERRQ(ierr); 3803a40ed3dSBarry Smith PetscFunctionReturn(0); 38190f02eecSBarry Smith } 38290f02eecSBarry Smith 383afcb2eb5SJed Brown #undef __FUNCT__ 384afcb2eb5SJed Brown #define __FUNCT__ "ISLocalToGlobalMappingApply" 385afcb2eb5SJed Brown /*@C 3863acfe500SLois Curfman McInnes ISLocalToGlobalMappingApply - Takes a list of integers in a local numbering 3873acfe500SLois Curfman McInnes and converts them to the global numbering. 38890f02eecSBarry Smith 389b9cd556bSLois Curfman McInnes Not collective 390b9cd556bSLois Curfman McInnes 391bb25748dSBarry Smith Input Parameters: 392b9cd556bSLois Curfman McInnes + mapping - the local to global mapping context 393bb25748dSBarry Smith . N - number of integers 394b9cd556bSLois Curfman McInnes - in - input indices in local numbering 395bb25748dSBarry Smith 396bb25748dSBarry Smith Output Parameter: 397bb25748dSBarry Smith . out - indices in global numbering 398bb25748dSBarry Smith 399b9cd556bSLois Curfman McInnes Notes: 400b9cd556bSLois Curfman McInnes The in and out array parameters may be identical. 401d4bb536fSBarry Smith 402a997ad1aSLois Curfman McInnes Level: advanced 403a997ad1aSLois Curfman McInnes 404bb25748dSBarry Smith .seealso: ISLocalToGlobalMappingCreate(),ISLocalToGlobalMappingDestroy(), 4050752156aSBarry Smith ISLocalToGlobalMappingApplyIS(),AOCreateBasic(),AOApplicationToPetsc(), 406d4bb536fSBarry Smith AOPetscToApplication(), ISGlobalToLocalMappingApply() 407bb25748dSBarry Smith 408273d9f13SBarry Smith Concepts: mapping^local to global 409afcb2eb5SJed Brown @*/ 410afcb2eb5SJed Brown PetscErrorCode ISLocalToGlobalMappingApply(ISLocalToGlobalMapping mapping,PetscInt N,const PetscInt in[],PetscInt out[]) 411afcb2eb5SJed Brown { 412afcb2eb5SJed Brown PetscInt i,Nmax = mapping->n; 413afcb2eb5SJed Brown const PetscInt *idx = mapping->indices; 414d4bb536fSBarry Smith 415afcb2eb5SJed Brown PetscFunctionBegin; 416afcb2eb5SJed Brown for (i=0; i<N; i++) { 417afcb2eb5SJed Brown if (in[i] < 0) { 418afcb2eb5SJed Brown out[i] = in[i]; 419afcb2eb5SJed Brown continue; 420afcb2eb5SJed Brown } 421afcb2eb5SJed Brown if (in[i] >= Nmax) SETERRQ3(PETSC_COMM_SELF,PETSC_ERR_ARG_OUTOFRANGE,"Local index %D too large %D (max) at %D",in[i],Nmax,i); 422afcb2eb5SJed Brown out[i] = idx[in[i]]; 423afcb2eb5SJed Brown } 424afcb2eb5SJed Brown PetscFunctionReturn(0); 425afcb2eb5SJed Brown } 426d4bb536fSBarry Smith 427d4bb536fSBarry Smith /* -----------------------------------------------------------------------------------------*/ 428d4bb536fSBarry Smith 4294a2ae208SSatish Balay #undef __FUNCT__ 4304a2ae208SSatish Balay #define __FUNCT__ "ISGlobalToLocalMappingSetUp_Private" 431d4bb536fSBarry Smith /* 432d4bb536fSBarry Smith Creates the global fields in the ISLocalToGlobalMapping structure 433d4bb536fSBarry Smith */ 4346849ba73SBarry Smith static PetscErrorCode ISGlobalToLocalMappingSetUp_Private(ISLocalToGlobalMapping mapping) 435d4bb536fSBarry Smith { 4366849ba73SBarry Smith PetscErrorCode ierr; 43732dcc486SBarry Smith PetscInt i,*idx = mapping->indices,n = mapping->n,end,start,*globals; 438d4bb536fSBarry Smith 4393a40ed3dSBarry Smith PetscFunctionBegin; 440d4bb536fSBarry Smith end = 0; 441ec268f7cSJed Brown start = PETSC_MAX_INT; 442d4bb536fSBarry Smith 443d4bb536fSBarry Smith for (i=0; i<n; i++) { 444d4bb536fSBarry Smith if (idx[i] < 0) continue; 445d4bb536fSBarry Smith if (idx[i] < start) start = idx[i]; 446d4bb536fSBarry Smith if (idx[i] > end) end = idx[i]; 447d4bb536fSBarry Smith } 448d4bb536fSBarry Smith if (start > end) {start = 0; end = -1;} 449d4bb536fSBarry Smith mapping->globalstart = start; 450d4bb536fSBarry Smith mapping->globalend = end; 451d4bb536fSBarry Smith 45232dcc486SBarry Smith ierr = PetscMalloc((end-start+2)*sizeof(PetscInt),&globals);CHKERRQ(ierr); 453b0a32e0cSBarry Smith mapping->globals = globals; 454f6e5521dSKarl Rupp for (i=0; i<end-start+1; i++) globals[i] = -1; 455d4bb536fSBarry Smith for (i=0; i<n; i++) { 456d4bb536fSBarry Smith if (idx[i] < 0) continue; 457d4bb536fSBarry Smith globals[idx[i] - start] = i; 458d4bb536fSBarry Smith } 459d4bb536fSBarry Smith 46052e6d16bSBarry Smith ierr = PetscLogObjectMemory(mapping,(end-start+1)*sizeof(PetscInt));CHKERRQ(ierr); 4613a40ed3dSBarry Smith PetscFunctionReturn(0); 462d4bb536fSBarry Smith } 463d4bb536fSBarry Smith 4644a2ae208SSatish Balay #undef __FUNCT__ 4654a2ae208SSatish Balay #define __FUNCT__ "ISGlobalToLocalMappingApply" 466d4bb536fSBarry Smith /*@ 467a997ad1aSLois Curfman McInnes ISGlobalToLocalMappingApply - Provides the local numbering for a list of integers 468a997ad1aSLois Curfman McInnes specified with a global numbering. 469d4bb536fSBarry Smith 470b9cd556bSLois Curfman McInnes Not collective 471b9cd556bSLois Curfman McInnes 472d4bb536fSBarry Smith Input Parameters: 473b9cd556bSLois Curfman McInnes + mapping - mapping between local and global numbering 474d4bb536fSBarry Smith . type - IS_GTOLM_MASK - replaces global indices with no local value with -1 475d4bb536fSBarry Smith IS_GTOLM_DROP - drops the indices with no local value from the output list 476d4bb536fSBarry Smith . n - number of global indices to map 477b9cd556bSLois Curfman McInnes - idx - global indices to map 478d4bb536fSBarry Smith 479d4bb536fSBarry Smith Output Parameters: 480b9cd556bSLois Curfman McInnes + nout - number of indices in output array (if type == IS_GTOLM_MASK then nout = n) 481b9cd556bSLois Curfman McInnes - idxout - local index of each global index, one must pass in an array long enough 482e182c471SBarry Smith to hold all the indices. You can call ISGlobalToLocalMappingApply() with 4830298fd71SBarry Smith idxout == NULL to determine the required length (returned in nout) 484e182c471SBarry Smith and then allocate the required space and call ISGlobalToLocalMappingApply() 485e182c471SBarry Smith a second time to set the values. 486d4bb536fSBarry Smith 487b9cd556bSLois Curfman McInnes Notes: 4880298fd71SBarry Smith Either nout or idxout may be NULL. idx and idxout may be identical. 489d4bb536fSBarry Smith 4900f5bd95cSBarry Smith This is not scalable in memory usage. Each processor requires O(Nglobal) size 4910f5bd95cSBarry Smith array to compute these. 4920f5bd95cSBarry Smith 493a997ad1aSLois Curfman McInnes Level: advanced 494a997ad1aSLois Curfman McInnes 49532fd6b96SBarry Smith Developer Note: The manual page states that idx and idxout may be identical but the calling 49632fd6b96SBarry Smith sequence declares idx as const so it cannot be the same as idxout. 49732fd6b96SBarry Smith 498273d9f13SBarry Smith Concepts: mapping^global to local 499d4bb536fSBarry Smith 500d4bb536fSBarry Smith .seealso: ISLocalToGlobalMappingApply(), ISLocalToGlobalMappingCreate(), 501d4bb536fSBarry Smith ISLocalToGlobalMappingDestroy() 502d4bb536fSBarry Smith @*/ 5037087cfbeSBarry Smith PetscErrorCode ISGlobalToLocalMappingApply(ISLocalToGlobalMapping mapping,ISGlobalToLocalMappingType type, 50432dcc486SBarry Smith PetscInt n,const PetscInt idx[],PetscInt *nout,PetscInt idxout[]) 505d4bb536fSBarry Smith { 50632dcc486SBarry Smith PetscInt i,*globals,nf = 0,tmp,start,end; 5076849ba73SBarry Smith PetscErrorCode ierr; 508d4bb536fSBarry Smith 5093a40ed3dSBarry Smith PetscFunctionBegin; 5100700a824SBarry Smith PetscValidHeaderSpecific(mapping,IS_LTOGM_CLASSID,1); 511d4bb536fSBarry Smith if (!mapping->globals) { 512d4bb536fSBarry Smith ierr = ISGlobalToLocalMappingSetUp_Private(mapping);CHKERRQ(ierr); 513d4bb536fSBarry Smith } 514d4bb536fSBarry Smith globals = mapping->globals; 515d4bb536fSBarry Smith start = mapping->globalstart; 516d4bb536fSBarry Smith end = mapping->globalend; 517d4bb536fSBarry Smith 518d4bb536fSBarry Smith if (type == IS_GTOLM_MASK) { 519d4bb536fSBarry Smith if (idxout) { 520d4bb536fSBarry Smith for (i=0; i<n; i++) { 521d4bb536fSBarry Smith if (idx[i] < 0) idxout[i] = idx[i]; 522d4bb536fSBarry Smith else if (idx[i] < start) idxout[i] = -1; 523d4bb536fSBarry Smith else if (idx[i] > end) idxout[i] = -1; 524d4bb536fSBarry Smith else idxout[i] = globals[idx[i] - start]; 525d4bb536fSBarry Smith } 526d4bb536fSBarry Smith } 527d4bb536fSBarry Smith if (nout) *nout = n; 528d4bb536fSBarry Smith } else { 529d4bb536fSBarry Smith if (idxout) { 530d4bb536fSBarry Smith for (i=0; i<n; i++) { 531d4bb536fSBarry Smith if (idx[i] < 0) continue; 532d4bb536fSBarry Smith if (idx[i] < start) continue; 533d4bb536fSBarry Smith if (idx[i] > end) continue; 534d4bb536fSBarry Smith tmp = globals[idx[i] - start]; 535d4bb536fSBarry Smith if (tmp < 0) continue; 536d4bb536fSBarry Smith idxout[nf++] = tmp; 537d4bb536fSBarry Smith } 538d4bb536fSBarry Smith } else { 539d4bb536fSBarry Smith for (i=0; i<n; i++) { 540d4bb536fSBarry Smith if (idx[i] < 0) continue; 541d4bb536fSBarry Smith if (idx[i] < start) continue; 542d4bb536fSBarry Smith if (idx[i] > end) continue; 543d4bb536fSBarry Smith tmp = globals[idx[i] - start]; 544d4bb536fSBarry Smith if (tmp < 0) continue; 545d4bb536fSBarry Smith nf++; 546d4bb536fSBarry Smith } 547d4bb536fSBarry Smith } 548d4bb536fSBarry Smith if (nout) *nout = nf; 549d4bb536fSBarry Smith } 5503a40ed3dSBarry Smith PetscFunctionReturn(0); 551d4bb536fSBarry Smith } 55290f02eecSBarry Smith 5534a2ae208SSatish Balay #undef __FUNCT__ 5544a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingGetInfo" 55589d82c54SBarry Smith /*@C 55689d82c54SBarry Smith ISLocalToGlobalMappingGetInfo - Gets the neighbor information for each processor and 55789d82c54SBarry Smith each index shared by more than one processor 55889d82c54SBarry Smith 55989d82c54SBarry Smith Collective on ISLocalToGlobalMapping 56089d82c54SBarry Smith 56189d82c54SBarry Smith Input Parameters: 56289d82c54SBarry Smith . mapping - the mapping from local to global indexing 56389d82c54SBarry Smith 56489d82c54SBarry Smith Output Parameter: 56589d82c54SBarry Smith + nproc - number of processors that are connected to this one 56689d82c54SBarry Smith . proc - neighboring processors 56707b52d57SBarry Smith . numproc - number of indices for each subdomain (processor) 5683463a7baSJed Brown - indices - indices of nodes (in local numbering) shared with neighbors (sorted by global numbering) 56989d82c54SBarry Smith 57089d82c54SBarry Smith Level: advanced 57189d82c54SBarry Smith 572273d9f13SBarry Smith Concepts: mapping^local to global 57389d82c54SBarry Smith 5742cfcea29SBarry Smith Fortran Usage: 5752cfcea29SBarry Smith $ ISLocalToGlobalMpngGetInfoSize(ISLocalToGlobalMapping,PetscInt nproc,PetscInt numprocmax,ierr) followed by 5762cfcea29SBarry Smith $ ISLocalToGlobalMappingGetInfo(ISLocalToGlobalMapping,PetscInt nproc, PetscInt procs[nproc],PetscInt numprocs[nproc], 5772cfcea29SBarry Smith PetscInt indices[nproc][numprocmax],ierr) 5782cfcea29SBarry Smith There is no ISLocalToGlobalMappingRestoreInfo() in Fortran. You must make sure that procs[], numprocs[] and 5792cfcea29SBarry Smith indices[][] are large enough arrays, either by allocating them dynamically or defining static ones large enough. 5802cfcea29SBarry Smith 5812cfcea29SBarry Smith 58207b52d57SBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreateIS(), ISLocalToGlobalMappingCreate(), 58307b52d57SBarry Smith ISLocalToGlobalMappingRestoreInfo() 58489d82c54SBarry Smith @*/ 5857087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingGetInfo(ISLocalToGlobalMapping mapping,PetscInt *nproc,PetscInt *procs[],PetscInt *numprocs[],PetscInt **indices[]) 58689d82c54SBarry Smith { 5876849ba73SBarry Smith PetscErrorCode ierr; 58897f1f81fSBarry Smith PetscMPIInt size,rank,tag1,tag2,tag3,*len,*source,imdex; 58932dcc486SBarry Smith PetscInt i,n = mapping->n,Ng,ng,max = 0,*lindices = mapping->indices; 59032dcc486SBarry Smith PetscInt *nprocs,*owner,nsends,*sends,j,*starts,nmax,nrecvs,*recvs,proc; 59197f1f81fSBarry Smith PetscInt cnt,scale,*ownedsenders,*nownedsenders,rstart,nowned; 59232dcc486SBarry Smith PetscInt node,nownedm,nt,*sends2,nsends2,*starts2,*lens2,*dest,nrecvs2,*starts3,*recvs2,k,*bprocs,*tmp; 59332dcc486SBarry Smith PetscInt first_procs,first_numprocs,*first_indices; 59489d82c54SBarry Smith MPI_Request *recv_waits,*send_waits; 59530dcb7c9SBarry Smith MPI_Status recv_status,*send_status,*recv_statuses; 596*ce94432eSBarry Smith MPI_Comm comm; 597ace3abfcSBarry Smith PetscBool debug = PETSC_FALSE; 59889d82c54SBarry Smith 59989d82c54SBarry Smith PetscFunctionBegin; 6000700a824SBarry Smith PetscValidHeaderSpecific(mapping,IS_LTOGM_CLASSID,1); 601*ce94432eSBarry Smith ierr = PetscObjectGetComm((PetscObject)mapping,&comm);CHKERRQ(ierr); 60224cf384cSBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 60324cf384cSBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 60424cf384cSBarry Smith if (size == 1) { 60524cf384cSBarry Smith *nproc = 0; 6060298fd71SBarry Smith *procs = NULL; 60732dcc486SBarry Smith ierr = PetscMalloc(sizeof(PetscInt),numprocs);CHKERRQ(ierr); 6081e2105dcSBarry Smith (*numprocs)[0] = 0; 60932dcc486SBarry Smith ierr = PetscMalloc(sizeof(PetscInt*),indices);CHKERRQ(ierr); 6100298fd71SBarry Smith (*indices)[0] = NULL; 61124cf384cSBarry Smith PetscFunctionReturn(0); 61224cf384cSBarry Smith } 61324cf384cSBarry Smith 6140298fd71SBarry Smith ierr = PetscOptionsGetBool(NULL,"-islocaltoglobalmappinggetinfo_debug",&debug,NULL);CHKERRQ(ierr); 61507b52d57SBarry Smith 6163677ff5aSBarry Smith /* 6173677ff5aSBarry Smith Notes on ISLocalToGlobalMappingGetInfo 6183677ff5aSBarry Smith 6193677ff5aSBarry Smith globally owned node - the nodes that have been assigned to this processor in global 6203677ff5aSBarry Smith numbering, just for this routine. 6213677ff5aSBarry Smith 6223677ff5aSBarry Smith nontrivial globally owned node - node assigned to this processor that is on a subdomain 6233677ff5aSBarry Smith boundary (i.e. is has more than one local owner) 6243677ff5aSBarry Smith 6253677ff5aSBarry Smith locally owned node - node that exists on this processors subdomain 6263677ff5aSBarry Smith 6273677ff5aSBarry Smith nontrivial locally owned node - node that is not in the interior (i.e. has more than one 6283677ff5aSBarry Smith local subdomain 6293677ff5aSBarry Smith */ 63024cf384cSBarry Smith ierr = PetscObjectGetNewTag((PetscObject)mapping,&tag1);CHKERRQ(ierr); 63124cf384cSBarry Smith ierr = PetscObjectGetNewTag((PetscObject)mapping,&tag2);CHKERRQ(ierr); 63224cf384cSBarry Smith ierr = PetscObjectGetNewTag((PetscObject)mapping,&tag3);CHKERRQ(ierr); 63389d82c54SBarry Smith 63489d82c54SBarry Smith for (i=0; i<n; i++) { 63589d82c54SBarry Smith if (lindices[i] > max) max = lindices[i]; 63689d82c54SBarry Smith } 63732dcc486SBarry Smith ierr = MPI_Allreduce(&max,&Ng,1,MPIU_INT,MPI_MAX,comm);CHKERRQ(ierr); 63878058e43SBarry Smith Ng++; 63989d82c54SBarry Smith ierr = MPI_Comm_size(comm,&size);CHKERRQ(ierr); 64089d82c54SBarry Smith ierr = MPI_Comm_rank(comm,&rank);CHKERRQ(ierr); 641bc8ff85bSBarry Smith scale = Ng/size + 1; 642a2e34c3dSBarry Smith ng = scale; if (rank == size-1) ng = Ng - scale*(size-1); ng = PetscMax(1,ng); 643caba0dd0SBarry Smith rstart = scale*rank; 64489d82c54SBarry Smith 64589d82c54SBarry Smith /* determine ownership ranges of global indices */ 6467c334f02SBarry Smith ierr = PetscMalloc(2*size*sizeof(PetscInt),&nprocs);CHKERRQ(ierr); 64732dcc486SBarry Smith ierr = PetscMemzero(nprocs,2*size*sizeof(PetscInt));CHKERRQ(ierr); 64889d82c54SBarry Smith 64989d82c54SBarry Smith /* determine owners of each local node */ 6507c334f02SBarry Smith ierr = PetscMalloc(n*sizeof(PetscInt),&owner);CHKERRQ(ierr); 65189d82c54SBarry Smith for (i=0; i<n; i++) { 6523677ff5aSBarry Smith proc = lindices[i]/scale; /* processor that globally owns this index */ 65327c402fcSBarry Smith nprocs[2*proc+1] = 1; /* processor globally owns at least one of ours */ 6543677ff5aSBarry Smith owner[i] = proc; 65527c402fcSBarry Smith nprocs[2*proc]++; /* count of how many that processor globally owns of ours */ 65689d82c54SBarry Smith } 65727c402fcSBarry Smith nsends = 0; for (i=0; i<size; i++) nsends += nprocs[2*i+1]; 6581e2582c4SBarry Smith ierr = PetscInfo1(mapping,"Number of global owners for my local data %d\n",nsends);CHKERRQ(ierr); 65989d82c54SBarry Smith 66089d82c54SBarry Smith /* inform other processors of number of messages and max length*/ 66127c402fcSBarry Smith ierr = PetscMaxSum(comm,nprocs,&nmax,&nrecvs);CHKERRQ(ierr); 6621e2582c4SBarry Smith ierr = PetscInfo1(mapping,"Number of local owners for my global data %d\n",nrecvs);CHKERRQ(ierr); 66389d82c54SBarry Smith 66489d82c54SBarry Smith /* post receives for owned rows */ 66532dcc486SBarry Smith ierr = PetscMalloc((2*nrecvs+1)*(nmax+1)*sizeof(PetscInt),&recvs);CHKERRQ(ierr); 666b0a32e0cSBarry Smith ierr = PetscMalloc((nrecvs+1)*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr); 66789d82c54SBarry Smith for (i=0; i<nrecvs; i++) { 66832dcc486SBarry Smith ierr = MPI_Irecv(recvs+2*nmax*i,2*nmax,MPIU_INT,MPI_ANY_SOURCE,tag1,comm,recv_waits+i);CHKERRQ(ierr); 66989d82c54SBarry Smith } 67089d82c54SBarry Smith 67189d82c54SBarry Smith /* pack messages containing lists of local nodes to owners */ 67232dcc486SBarry Smith ierr = PetscMalloc((2*n+1)*sizeof(PetscInt),&sends);CHKERRQ(ierr); 67332dcc486SBarry Smith ierr = PetscMalloc((size+1)*sizeof(PetscInt),&starts);CHKERRQ(ierr); 67489d82c54SBarry Smith starts[0] = 0; 675f6e5521dSKarl Rupp for (i=1; i<size; i++) starts[i] = starts[i-1] + 2*nprocs[2*i-2]; 67689d82c54SBarry Smith for (i=0; i<n; i++) { 67789d82c54SBarry Smith sends[starts[owner[i]]++] = lindices[i]; 67830dcb7c9SBarry Smith sends[starts[owner[i]]++] = i; 67989d82c54SBarry Smith } 68089d82c54SBarry Smith ierr = PetscFree(owner);CHKERRQ(ierr); 68189d82c54SBarry Smith starts[0] = 0; 682f6e5521dSKarl Rupp for (i=1; i<size; i++) starts[i] = starts[i-1] + 2*nprocs[2*i-2]; 68389d82c54SBarry Smith 68489d82c54SBarry Smith /* send the messages */ 685b0a32e0cSBarry Smith ierr = PetscMalloc((nsends+1)*sizeof(MPI_Request),&send_waits);CHKERRQ(ierr); 68632dcc486SBarry Smith ierr = PetscMalloc((nsends+1)*sizeof(PetscInt),&dest);CHKERRQ(ierr); 68789d82c54SBarry Smith cnt = 0; 68889d82c54SBarry Smith for (i=0; i<size; i++) { 68927c402fcSBarry Smith if (nprocs[2*i]) { 69032dcc486SBarry Smith ierr = MPI_Isend(sends+starts[i],2*nprocs[2*i],MPIU_INT,i,tag1,comm,send_waits+cnt);CHKERRQ(ierr); 69130dcb7c9SBarry Smith dest[cnt] = i; 69289d82c54SBarry Smith cnt++; 69389d82c54SBarry Smith } 69489d82c54SBarry Smith } 69589d82c54SBarry Smith ierr = PetscFree(starts);CHKERRQ(ierr); 69689d82c54SBarry Smith 69789d82c54SBarry Smith /* wait on receives */ 69897f1f81fSBarry Smith ierr = PetscMalloc((nrecvs+1)*sizeof(PetscMPIInt),&source);CHKERRQ(ierr); 69997f1f81fSBarry Smith ierr = PetscMalloc((nrecvs+1)*sizeof(PetscMPIInt),&len);CHKERRQ(ierr); 70089d82c54SBarry Smith cnt = nrecvs; 70132dcc486SBarry Smith ierr = PetscMalloc((ng+1)*sizeof(PetscInt),&nownedsenders);CHKERRQ(ierr); 70232dcc486SBarry Smith ierr = PetscMemzero(nownedsenders,ng*sizeof(PetscInt));CHKERRQ(ierr); 70389d82c54SBarry Smith while (cnt) { 70489d82c54SBarry Smith ierr = MPI_Waitany(nrecvs,recv_waits,&imdex,&recv_status);CHKERRQ(ierr); 70589d82c54SBarry Smith /* unpack receives into our local space */ 70632dcc486SBarry Smith ierr = MPI_Get_count(&recv_status,MPIU_INT,&len[imdex]);CHKERRQ(ierr); 70789d82c54SBarry Smith source[imdex] = recv_status.MPI_SOURCE; 70830dcb7c9SBarry Smith len[imdex] = len[imdex]/2; 709caba0dd0SBarry Smith /* count how many local owners for each of my global owned indices */ 71030dcb7c9SBarry Smith for (i=0; i<len[imdex]; i++) nownedsenders[recvs[2*imdex*nmax+2*i]-rstart]++; 71189d82c54SBarry Smith cnt--; 71289d82c54SBarry Smith } 71389d82c54SBarry Smith ierr = PetscFree(recv_waits);CHKERRQ(ierr); 71489d82c54SBarry Smith 71530dcb7c9SBarry Smith /* count how many globally owned indices are on an edge multiplied by how many processors own them. */ 716bc8ff85bSBarry Smith nowned = 0; 717bc8ff85bSBarry Smith nownedm = 0; 718bc8ff85bSBarry Smith for (i=0; i<ng; i++) { 719bc8ff85bSBarry Smith if (nownedsenders[i] > 1) {nownedm += nownedsenders[i]; nowned++;} 720bc8ff85bSBarry Smith } 721bc8ff85bSBarry Smith 722bc8ff85bSBarry Smith /* create single array to contain rank of all local owners of each globally owned index */ 72332dcc486SBarry Smith ierr = PetscMalloc((nownedm+1)*sizeof(PetscInt),&ownedsenders);CHKERRQ(ierr); 72432dcc486SBarry Smith ierr = PetscMalloc((ng+1)*sizeof(PetscInt),&starts);CHKERRQ(ierr); 725bc8ff85bSBarry Smith starts[0] = 0; 726bc8ff85bSBarry Smith for (i=1; i<ng; i++) { 727bc8ff85bSBarry Smith if (nownedsenders[i-1] > 1) starts[i] = starts[i-1] + nownedsenders[i-1]; 728bc8ff85bSBarry Smith else starts[i] = starts[i-1]; 729bc8ff85bSBarry Smith } 730bc8ff85bSBarry Smith 73130dcb7c9SBarry Smith /* for each nontrival globally owned node list all arriving processors */ 732bc8ff85bSBarry Smith for (i=0; i<nrecvs; i++) { 733bc8ff85bSBarry Smith for (j=0; j<len[i]; j++) { 73430dcb7c9SBarry Smith node = recvs[2*i*nmax+2*j]-rstart; 735f6e5521dSKarl Rupp if (nownedsenders[node] > 1) ownedsenders[starts[node]++] = source[i]; 736bc8ff85bSBarry Smith } 737bc8ff85bSBarry Smith } 738bc8ff85bSBarry Smith 73907b52d57SBarry Smith if (debug) { /* ----------------------------------- */ 74030dcb7c9SBarry Smith starts[0] = 0; 74130dcb7c9SBarry Smith for (i=1; i<ng; i++) { 74230dcb7c9SBarry Smith if (nownedsenders[i-1] > 1) starts[i] = starts[i-1] + nownedsenders[i-1]; 74330dcb7c9SBarry Smith else starts[i] = starts[i-1]; 74430dcb7c9SBarry Smith } 74530dcb7c9SBarry Smith for (i=0; i<ng; i++) { 74630dcb7c9SBarry Smith if (nownedsenders[i] > 1) { 74730dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"[%d] global node %d local owner processors: ",rank,i+rstart);CHKERRQ(ierr); 74830dcb7c9SBarry Smith for (j=0; j<nownedsenders[i]; j++) { 74930dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"%d ",ownedsenders[starts[i]+j]);CHKERRQ(ierr); 75030dcb7c9SBarry Smith } 75130dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"\n");CHKERRQ(ierr); 75230dcb7c9SBarry Smith } 75330dcb7c9SBarry Smith } 75430dcb7c9SBarry Smith ierr = PetscSynchronizedFlush(comm);CHKERRQ(ierr); 75507b52d57SBarry Smith } /* ----------------------------------- */ 75630dcb7c9SBarry Smith 7573677ff5aSBarry Smith /* wait on original sends */ 7583a96401aSBarry Smith if (nsends) { 759b0a32e0cSBarry Smith ierr = PetscMalloc(nsends*sizeof(MPI_Status),&send_status);CHKERRQ(ierr); 7603a96401aSBarry Smith ierr = MPI_Waitall(nsends,send_waits,send_status);CHKERRQ(ierr); 7613a96401aSBarry Smith ierr = PetscFree(send_status);CHKERRQ(ierr); 7623a96401aSBarry Smith } 76389d82c54SBarry Smith ierr = PetscFree(send_waits);CHKERRQ(ierr); 7643a96401aSBarry Smith ierr = PetscFree(sends);CHKERRQ(ierr); 7653677ff5aSBarry Smith ierr = PetscFree(nprocs);CHKERRQ(ierr); 7663677ff5aSBarry Smith 7673677ff5aSBarry Smith /* pack messages to send back to local owners */ 76830dcb7c9SBarry Smith starts[0] = 0; 76930dcb7c9SBarry Smith for (i=1; i<ng; i++) { 77030dcb7c9SBarry Smith if (nownedsenders[i-1] > 1) starts[i] = starts[i-1] + nownedsenders[i-1]; 77130dcb7c9SBarry Smith else starts[i] = starts[i-1]; 77230dcb7c9SBarry Smith } 77330dcb7c9SBarry Smith nsends2 = nrecvs; 77432dcc486SBarry Smith ierr = PetscMalloc((nsends2+1)*sizeof(PetscInt),&nprocs);CHKERRQ(ierr); /* length of each message */ 77530dcb7c9SBarry Smith for (i=0; i<nrecvs; i++) { 77630dcb7c9SBarry Smith nprocs[i] = 1; 77730dcb7c9SBarry Smith for (j=0; j<len[i]; j++) { 77830dcb7c9SBarry Smith node = recvs[2*i*nmax+2*j]-rstart; 779f6e5521dSKarl Rupp if (nownedsenders[node] > 1) nprocs[i] += 2 + nownedsenders[node]; 78030dcb7c9SBarry Smith } 78130dcb7c9SBarry Smith } 782f6e5521dSKarl Rupp nt = 0; 783f6e5521dSKarl Rupp for (i=0; i<nsends2; i++) nt += nprocs[i]; 784f6e5521dSKarl Rupp 78532dcc486SBarry Smith ierr = PetscMalloc((nt+1)*sizeof(PetscInt),&sends2);CHKERRQ(ierr); 78632dcc486SBarry Smith ierr = PetscMalloc((nsends2+1)*sizeof(PetscInt),&starts2);CHKERRQ(ierr); 787f6e5521dSKarl Rupp 788f6e5521dSKarl Rupp starts2[0] = 0; 789f6e5521dSKarl Rupp for (i=1; i<nsends2; i++) starts2[i] = starts2[i-1] + nprocs[i-1]; 79030dcb7c9SBarry Smith /* 79130dcb7c9SBarry Smith Each message is 1 + nprocs[i] long, and consists of 79230dcb7c9SBarry Smith (0) the number of nodes being sent back 79330dcb7c9SBarry Smith (1) the local node number, 79430dcb7c9SBarry Smith (2) the number of processors sharing it, 79530dcb7c9SBarry Smith (3) the processors sharing it 79630dcb7c9SBarry Smith */ 79730dcb7c9SBarry Smith for (i=0; i<nsends2; i++) { 79830dcb7c9SBarry Smith cnt = 1; 79930dcb7c9SBarry Smith sends2[starts2[i]] = 0; 80030dcb7c9SBarry Smith for (j=0; j<len[i]; j++) { 80130dcb7c9SBarry Smith node = recvs[2*i*nmax+2*j]-rstart; 80230dcb7c9SBarry Smith if (nownedsenders[node] > 1) { 80330dcb7c9SBarry Smith sends2[starts2[i]]++; 80430dcb7c9SBarry Smith sends2[starts2[i]+cnt++] = recvs[2*i*nmax+2*j+1]; 80530dcb7c9SBarry Smith sends2[starts2[i]+cnt++] = nownedsenders[node]; 80632dcc486SBarry Smith ierr = PetscMemcpy(&sends2[starts2[i]+cnt],&ownedsenders[starts[node]],nownedsenders[node]*sizeof(PetscInt));CHKERRQ(ierr); 80730dcb7c9SBarry Smith cnt += nownedsenders[node]; 80830dcb7c9SBarry Smith } 80930dcb7c9SBarry Smith } 81030dcb7c9SBarry Smith } 81130dcb7c9SBarry Smith 81230dcb7c9SBarry Smith /* receive the message lengths */ 81330dcb7c9SBarry Smith nrecvs2 = nsends; 81432dcc486SBarry Smith ierr = PetscMalloc((nrecvs2+1)*sizeof(PetscInt),&lens2);CHKERRQ(ierr); 81532dcc486SBarry Smith ierr = PetscMalloc((nrecvs2+1)*sizeof(PetscInt),&starts3);CHKERRQ(ierr); 816d44834fbSBarry Smith ierr = PetscMalloc((nrecvs2+1)*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr); 81730dcb7c9SBarry Smith for (i=0; i<nrecvs2; i++) { 818d44834fbSBarry Smith ierr = MPI_Irecv(&lens2[i],1,MPIU_INT,dest[i],tag2,comm,recv_waits+i);CHKERRQ(ierr); 81930dcb7c9SBarry Smith } 820d44834fbSBarry Smith 8218a8e0b3aSBarry Smith /* send the message lengths */ 8228a8e0b3aSBarry Smith for (i=0; i<nsends2; i++) { 8238a8e0b3aSBarry Smith ierr = MPI_Send(&nprocs[i],1,MPIU_INT,source[i],tag2,comm);CHKERRQ(ierr); 8248a8e0b3aSBarry Smith } 8258a8e0b3aSBarry Smith 826d44834fbSBarry Smith /* wait on receives of lens */ 8270c468ba9SBarry Smith if (nrecvs2) { 8280c468ba9SBarry Smith ierr = PetscMalloc(nrecvs2*sizeof(MPI_Status),&recv_statuses);CHKERRQ(ierr); 829d44834fbSBarry Smith ierr = MPI_Waitall(nrecvs2,recv_waits,recv_statuses);CHKERRQ(ierr); 830d44834fbSBarry Smith ierr = PetscFree(recv_statuses);CHKERRQ(ierr); 8310c468ba9SBarry Smith } 832a2ea699eSBarry Smith ierr = PetscFree(recv_waits);CHKERRQ(ierr); 833d44834fbSBarry Smith 83430dcb7c9SBarry Smith starts3[0] = 0; 835d44834fbSBarry Smith nt = 0; 83630dcb7c9SBarry Smith for (i=0; i<nrecvs2-1; i++) { 83730dcb7c9SBarry Smith starts3[i+1] = starts3[i] + lens2[i]; 838d44834fbSBarry Smith nt += lens2[i]; 83930dcb7c9SBarry Smith } 84076466f69SStefano Zampini if (nrecvs2) nt += lens2[nrecvs2-1]; 841d44834fbSBarry Smith 84232dcc486SBarry Smith ierr = PetscMalloc((nt+1)*sizeof(PetscInt),&recvs2);CHKERRQ(ierr); 843b0a32e0cSBarry Smith ierr = PetscMalloc((nrecvs2+1)*sizeof(MPI_Request),&recv_waits);CHKERRQ(ierr); 84452b72c4aSBarry Smith for (i=0; i<nrecvs2; i++) { 84532dcc486SBarry Smith ierr = MPI_Irecv(recvs2+starts3[i],lens2[i],MPIU_INT,dest[i],tag3,comm,recv_waits+i);CHKERRQ(ierr); 84630dcb7c9SBarry Smith } 84730dcb7c9SBarry Smith 84830dcb7c9SBarry Smith /* send the messages */ 849b0a32e0cSBarry Smith ierr = PetscMalloc((nsends2+1)*sizeof(MPI_Request),&send_waits);CHKERRQ(ierr); 85030dcb7c9SBarry Smith for (i=0; i<nsends2; i++) { 85132dcc486SBarry Smith ierr = MPI_Isend(sends2+starts2[i],nprocs[i],MPIU_INT,source[i],tag3,comm,send_waits+i);CHKERRQ(ierr); 85230dcb7c9SBarry Smith } 85330dcb7c9SBarry Smith 85430dcb7c9SBarry Smith /* wait on receives */ 8550c468ba9SBarry Smith if (nrecvs2) { 8560c468ba9SBarry Smith ierr = PetscMalloc(nrecvs2*sizeof(MPI_Status),&recv_statuses);CHKERRQ(ierr); 85730dcb7c9SBarry Smith ierr = MPI_Waitall(nrecvs2,recv_waits,recv_statuses);CHKERRQ(ierr); 85830dcb7c9SBarry Smith ierr = PetscFree(recv_statuses);CHKERRQ(ierr); 8590c468ba9SBarry Smith } 86030dcb7c9SBarry Smith ierr = PetscFree(recv_waits);CHKERRQ(ierr); 86130dcb7c9SBarry Smith ierr = PetscFree(nprocs);CHKERRQ(ierr); 86230dcb7c9SBarry Smith 86307b52d57SBarry Smith if (debug) { /* ----------------------------------- */ 86430dcb7c9SBarry Smith cnt = 0; 86530dcb7c9SBarry Smith for (i=0; i<nrecvs2; i++) { 86630dcb7c9SBarry Smith nt = recvs2[cnt++]; 86730dcb7c9SBarry Smith for (j=0; j<nt; j++) { 86830dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"[%d] local node %d number of subdomains %d: ",rank,recvs2[cnt],recvs2[cnt+1]);CHKERRQ(ierr); 86930dcb7c9SBarry Smith for (k=0; k<recvs2[cnt+1]; k++) { 87030dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"%d ",recvs2[cnt+2+k]);CHKERRQ(ierr); 87130dcb7c9SBarry Smith } 87230dcb7c9SBarry Smith cnt += 2 + recvs2[cnt+1]; 87330dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"\n");CHKERRQ(ierr); 87430dcb7c9SBarry Smith } 87530dcb7c9SBarry Smith } 87630dcb7c9SBarry Smith ierr = PetscSynchronizedFlush(comm);CHKERRQ(ierr); 87707b52d57SBarry Smith } /* ----------------------------------- */ 87830dcb7c9SBarry Smith 87930dcb7c9SBarry Smith /* count number subdomains for each local node */ 88032dcc486SBarry Smith ierr = PetscMalloc(size*sizeof(PetscInt),&nprocs);CHKERRQ(ierr); 88132dcc486SBarry Smith ierr = PetscMemzero(nprocs,size*sizeof(PetscInt));CHKERRQ(ierr); 88230dcb7c9SBarry Smith cnt = 0; 88330dcb7c9SBarry Smith for (i=0; i<nrecvs2; i++) { 88430dcb7c9SBarry Smith nt = recvs2[cnt++]; 88530dcb7c9SBarry Smith for (j=0; j<nt; j++) { 886f6e5521dSKarl Rupp for (k=0; k<recvs2[cnt+1]; k++) nprocs[recvs2[cnt+2+k]]++; 88730dcb7c9SBarry Smith cnt += 2 + recvs2[cnt+1]; 88830dcb7c9SBarry Smith } 88930dcb7c9SBarry Smith } 89030dcb7c9SBarry Smith nt = 0; for (i=0; i<size; i++) nt += (nprocs[i] > 0); 89130dcb7c9SBarry Smith *nproc = nt; 89232dcc486SBarry Smith ierr = PetscMalloc((nt+1)*sizeof(PetscInt),procs);CHKERRQ(ierr); 89332dcc486SBarry Smith ierr = PetscMalloc((nt+1)*sizeof(PetscInt),numprocs);CHKERRQ(ierr); 89432dcc486SBarry Smith ierr = PetscMalloc((nt+1)*sizeof(PetscInt*),indices);CHKERRQ(ierr); 8950298fd71SBarry Smith for (i=0;i<nt+1;i++) (*indices)[i]=NULL; 89632dcc486SBarry Smith ierr = PetscMalloc(size*sizeof(PetscInt),&bprocs);CHKERRQ(ierr); 89730dcb7c9SBarry Smith cnt = 0; 89830dcb7c9SBarry Smith for (i=0; i<size; i++) { 89930dcb7c9SBarry Smith if (nprocs[i] > 0) { 90030dcb7c9SBarry Smith bprocs[i] = cnt; 90130dcb7c9SBarry Smith (*procs)[cnt] = i; 90230dcb7c9SBarry Smith (*numprocs)[cnt] = nprocs[i]; 90332dcc486SBarry Smith ierr = PetscMalloc(nprocs[i]*sizeof(PetscInt),&(*indices)[cnt]);CHKERRQ(ierr); 90430dcb7c9SBarry Smith cnt++; 90530dcb7c9SBarry Smith } 90630dcb7c9SBarry Smith } 90730dcb7c9SBarry Smith 90830dcb7c9SBarry Smith /* make the list of subdomains for each nontrivial local node */ 90932dcc486SBarry Smith ierr = PetscMemzero(*numprocs,nt*sizeof(PetscInt));CHKERRQ(ierr); 91030dcb7c9SBarry Smith cnt = 0; 91130dcb7c9SBarry Smith for (i=0; i<nrecvs2; i++) { 91230dcb7c9SBarry Smith nt = recvs2[cnt++]; 91330dcb7c9SBarry Smith for (j=0; j<nt; j++) { 914f6e5521dSKarl Rupp for (k=0; k<recvs2[cnt+1]; k++) (*indices)[bprocs[recvs2[cnt+2+k]]][(*numprocs)[bprocs[recvs2[cnt+2+k]]]++] = recvs2[cnt]; 91530dcb7c9SBarry Smith cnt += 2 + recvs2[cnt+1]; 91630dcb7c9SBarry Smith } 91730dcb7c9SBarry Smith } 91830dcb7c9SBarry Smith ierr = PetscFree(bprocs);CHKERRQ(ierr); 91907b52d57SBarry Smith ierr = PetscFree(recvs2);CHKERRQ(ierr); 92030dcb7c9SBarry Smith 92107b52d57SBarry Smith /* sort the node indexing by their global numbers */ 92207b52d57SBarry Smith nt = *nproc; 92307b52d57SBarry Smith for (i=0; i<nt; i++) { 92432dcc486SBarry Smith ierr = PetscMalloc(((*numprocs)[i])*sizeof(PetscInt),&tmp);CHKERRQ(ierr); 925f6e5521dSKarl Rupp for (j=0; j<(*numprocs)[i]; j++) tmp[j] = lindices[(*indices)[i][j]]; 92607b52d57SBarry Smith ierr = PetscSortIntWithArray((*numprocs)[i],tmp,(*indices)[i]);CHKERRQ(ierr); 92707b52d57SBarry Smith ierr = PetscFree(tmp);CHKERRQ(ierr); 92807b52d57SBarry Smith } 92907b52d57SBarry Smith 93007b52d57SBarry Smith if (debug) { /* ----------------------------------- */ 93130dcb7c9SBarry Smith nt = *nproc; 93230dcb7c9SBarry Smith for (i=0; i<nt; i++) { 93330dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"[%d] subdomain %d number of indices %d: ",rank,(*procs)[i],(*numprocs)[i]);CHKERRQ(ierr); 93430dcb7c9SBarry Smith for (j=0; j<(*numprocs)[i]; j++) { 93530dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"%d ",(*indices)[i][j]);CHKERRQ(ierr); 93630dcb7c9SBarry Smith } 93730dcb7c9SBarry Smith ierr = PetscSynchronizedPrintf(comm,"\n");CHKERRQ(ierr); 93830dcb7c9SBarry Smith } 93930dcb7c9SBarry Smith ierr = PetscSynchronizedFlush(comm);CHKERRQ(ierr); 94007b52d57SBarry Smith } /* ----------------------------------- */ 94130dcb7c9SBarry Smith 94230dcb7c9SBarry Smith /* wait on sends */ 94330dcb7c9SBarry Smith if (nsends2) { 944b0a32e0cSBarry Smith ierr = PetscMalloc(nsends2*sizeof(MPI_Status),&send_status);CHKERRQ(ierr); 94530dcb7c9SBarry Smith ierr = MPI_Waitall(nsends2,send_waits,send_status);CHKERRQ(ierr); 94630dcb7c9SBarry Smith ierr = PetscFree(send_status);CHKERRQ(ierr); 94730dcb7c9SBarry Smith } 94830dcb7c9SBarry Smith 94930dcb7c9SBarry Smith ierr = PetscFree(starts3);CHKERRQ(ierr); 95030dcb7c9SBarry Smith ierr = PetscFree(dest);CHKERRQ(ierr); 95130dcb7c9SBarry Smith ierr = PetscFree(send_waits);CHKERRQ(ierr); 9523677ff5aSBarry Smith 953bc8ff85bSBarry Smith ierr = PetscFree(nownedsenders);CHKERRQ(ierr); 954bc8ff85bSBarry Smith ierr = PetscFree(ownedsenders);CHKERRQ(ierr); 955bc8ff85bSBarry Smith ierr = PetscFree(starts);CHKERRQ(ierr); 95630dcb7c9SBarry Smith ierr = PetscFree(starts2);CHKERRQ(ierr); 95730dcb7c9SBarry Smith ierr = PetscFree(lens2);CHKERRQ(ierr); 95889d82c54SBarry Smith 95989d82c54SBarry Smith ierr = PetscFree(source);CHKERRQ(ierr); 96097f1f81fSBarry Smith ierr = PetscFree(len);CHKERRQ(ierr); 96189d82c54SBarry Smith ierr = PetscFree(recvs);CHKERRQ(ierr); 9623a96401aSBarry Smith ierr = PetscFree(nprocs);CHKERRQ(ierr); 96330dcb7c9SBarry Smith ierr = PetscFree(sends2);CHKERRQ(ierr); 96424cf384cSBarry Smith 96524cf384cSBarry Smith /* put the information about myself as the first entry in the list */ 96624cf384cSBarry Smith first_procs = (*procs)[0]; 96724cf384cSBarry Smith first_numprocs = (*numprocs)[0]; 96824cf384cSBarry Smith first_indices = (*indices)[0]; 96924cf384cSBarry Smith for (i=0; i<*nproc; i++) { 97024cf384cSBarry Smith if ((*procs)[i] == rank) { 97124cf384cSBarry Smith (*procs)[0] = (*procs)[i]; 97224cf384cSBarry Smith (*numprocs)[0] = (*numprocs)[i]; 97324cf384cSBarry Smith (*indices)[0] = (*indices)[i]; 97424cf384cSBarry Smith (*procs)[i] = first_procs; 97524cf384cSBarry Smith (*numprocs)[i] = first_numprocs; 97624cf384cSBarry Smith (*indices)[i] = first_indices; 97724cf384cSBarry Smith break; 97824cf384cSBarry Smith } 97924cf384cSBarry Smith } 98089d82c54SBarry Smith PetscFunctionReturn(0); 98189d82c54SBarry Smith } 98289d82c54SBarry Smith 9834a2ae208SSatish Balay #undef __FUNCT__ 9844a2ae208SSatish Balay #define __FUNCT__ "ISLocalToGlobalMappingRestoreInfo" 98507b52d57SBarry Smith /*@C 98607b52d57SBarry Smith ISLocalToGlobalMappingRestoreInfo - Frees the memory allocated by ISLocalToGlobalMappingGetInfo() 98789d82c54SBarry Smith 98807b52d57SBarry Smith Collective on ISLocalToGlobalMapping 98907b52d57SBarry Smith 99007b52d57SBarry Smith Input Parameters: 99107b52d57SBarry Smith . mapping - the mapping from local to global indexing 99207b52d57SBarry Smith 99307b52d57SBarry Smith Output Parameter: 99407b52d57SBarry Smith + nproc - number of processors that are connected to this one 99507b52d57SBarry Smith . proc - neighboring processors 99607b52d57SBarry Smith . numproc - number of indices for each processor 99707b52d57SBarry Smith - indices - indices of local nodes shared with neighbor (sorted by global numbering) 99807b52d57SBarry Smith 99907b52d57SBarry Smith Level: advanced 100007b52d57SBarry Smith 100107b52d57SBarry Smith .seealso: ISLocalToGlobalMappingDestroy(), ISLocalToGlobalMappingCreateIS(), ISLocalToGlobalMappingCreate(), 100207b52d57SBarry Smith ISLocalToGlobalMappingGetInfo() 100307b52d57SBarry Smith @*/ 10047087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingRestoreInfo(ISLocalToGlobalMapping mapping,PetscInt *nproc,PetscInt *procs[],PetscInt *numprocs[],PetscInt **indices[]) 100507b52d57SBarry Smith { 10066849ba73SBarry Smith PetscErrorCode ierr; 100732dcc486SBarry Smith PetscInt i; 100807b52d57SBarry Smith 100907b52d57SBarry Smith PetscFunctionBegin; 101005b42c5fSBarry Smith ierr = PetscFree(*procs);CHKERRQ(ierr); 101105b42c5fSBarry Smith ierr = PetscFree(*numprocs);CHKERRQ(ierr); 101200ff320aSBarry Smith if (*indices) { 101305b42c5fSBarry Smith ierr = PetscFree((*indices)[0]);CHKERRQ(ierr); 101400ff320aSBarry Smith for (i=1; i<*nproc; i++) { 101505b42c5fSBarry Smith ierr = PetscFree((*indices)[i]);CHKERRQ(ierr); 101607b52d57SBarry Smith } 101707b52d57SBarry Smith ierr = PetscFree(*indices);CHKERRQ(ierr); 101824cf384cSBarry Smith } 101907b52d57SBarry Smith PetscFunctionReturn(0); 102007b52d57SBarry Smith } 102186994e45SJed Brown 102286994e45SJed Brown #undef __FUNCT__ 102386994e45SJed Brown #define __FUNCT__ "ISLocalToGlobalMappingGetIndices" 102486994e45SJed Brown /*@C 102586994e45SJed Brown ISLocalToGlobalMappingGetIndices - Get global indices for every local point 102686994e45SJed Brown 102786994e45SJed Brown Not Collective 102886994e45SJed Brown 102986994e45SJed Brown Input Arguments: 103086994e45SJed Brown . ltog - local to global mapping 103186994e45SJed Brown 103286994e45SJed Brown Output Arguments: 103386994e45SJed Brown . array - array of indices 103486994e45SJed Brown 103586994e45SJed Brown Level: advanced 103686994e45SJed Brown 103786994e45SJed Brown .seealso: ISLocalToGlobalMappingCreate(), ISLocalToGlobalMappingApply(), ISLocalToGlobalMappingRestoreIndices() 103886994e45SJed Brown @*/ 10397087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingGetIndices(ISLocalToGlobalMapping ltog,const PetscInt **array) 104086994e45SJed Brown { 104186994e45SJed Brown PetscFunctionBegin; 104286994e45SJed Brown PetscValidHeaderSpecific(ltog,IS_LTOGM_CLASSID,1); 104386994e45SJed Brown PetscValidPointer(array,2); 104486994e45SJed Brown *array = ltog->indices; 104586994e45SJed Brown PetscFunctionReturn(0); 104686994e45SJed Brown } 104786994e45SJed Brown 104886994e45SJed Brown #undef __FUNCT__ 104986994e45SJed Brown #define __FUNCT__ "ISLocalToGlobalMappingRestoreIndices" 105086994e45SJed Brown /*@C 105186994e45SJed Brown ISLocalToGlobalMappingRestoreIndices - Restore indices obtained with ISLocalToGlobalMappingRestoreIndices() 105286994e45SJed Brown 105386994e45SJed Brown Not Collective 105486994e45SJed Brown 105586994e45SJed Brown Input Arguments: 105686994e45SJed Brown + ltog - local to global mapping 105786994e45SJed Brown - array - array of indices 105886994e45SJed Brown 105986994e45SJed Brown Level: advanced 106086994e45SJed Brown 106186994e45SJed Brown .seealso: ISLocalToGlobalMappingCreate(), ISLocalToGlobalMappingApply(), ISLocalToGlobalMappingGetIndices() 106286994e45SJed Brown @*/ 10637087cfbeSBarry Smith PetscErrorCode ISLocalToGlobalMappingRestoreIndices(ISLocalToGlobalMapping ltog,const PetscInt **array) 106486994e45SJed Brown { 106586994e45SJed Brown PetscFunctionBegin; 106686994e45SJed Brown PetscValidHeaderSpecific(ltog,IS_LTOGM_CLASSID,1); 106786994e45SJed Brown PetscValidPointer(array,2); 106886994e45SJed Brown if (*array != ltog->indices) SETERRQ(PETSC_COMM_SELF,PETSC_ERR_ARG_BADPTR,"Trying to return mismatched pointer"); 10690298fd71SBarry Smith *array = NULL; 107086994e45SJed Brown PetscFunctionReturn(0); 107186994e45SJed Brown } 1072f7efa3c7SJed Brown 1073f7efa3c7SJed Brown #undef __FUNCT__ 1074f7efa3c7SJed Brown #define __FUNCT__ "ISLocalToGlobalMappingConcatenate" 1075f7efa3c7SJed Brown /*@C 1076f7efa3c7SJed Brown ISLocalToGlobalMappingConcatenate - Create a new mapping that concatenates a list of mappings 1077f7efa3c7SJed Brown 1078f7efa3c7SJed Brown Not Collective 1079f7efa3c7SJed Brown 1080f7efa3c7SJed Brown Input Arguments: 1081f7efa3c7SJed Brown + comm - communicator for the new mapping, must contain the communicator of every mapping to concatenate 1082f7efa3c7SJed Brown . n - number of mappings to concatenate 1083f7efa3c7SJed Brown - ltogs - local to global mappings 1084f7efa3c7SJed Brown 1085f7efa3c7SJed Brown Output Arguments: 1086f7efa3c7SJed Brown . ltogcat - new mapping 1087f7efa3c7SJed Brown 1088f7efa3c7SJed Brown Level: advanced 1089f7efa3c7SJed Brown 1090f7efa3c7SJed Brown .seealso: ISLocalToGlobalMappingCreate() 1091f7efa3c7SJed Brown @*/ 1092f7efa3c7SJed Brown PetscErrorCode ISLocalToGlobalMappingConcatenate(MPI_Comm comm,PetscInt n,const ISLocalToGlobalMapping ltogs[],ISLocalToGlobalMapping *ltogcat) 1093f7efa3c7SJed Brown { 1094f7efa3c7SJed Brown PetscInt i,cnt,m,*idx; 1095f7efa3c7SJed Brown PetscErrorCode ierr; 1096f7efa3c7SJed Brown 1097f7efa3c7SJed Brown PetscFunctionBegin; 1098f7efa3c7SJed Brown if (n < 0) SETERRQ1(comm,PETSC_ERR_ARG_OUTOFRANGE,"Must have a non-negative number of mappings, given %D",n); 1099f7efa3c7SJed Brown if (n > 0) PetscValidPointer(ltogs,3); 1100f7efa3c7SJed Brown for (i=0; i<n; i++) PetscValidHeaderSpecific(ltogs[i],IS_LTOGM_CLASSID,3); 1101f7efa3c7SJed Brown PetscValidPointer(ltogcat,4); 1102f7efa3c7SJed Brown for (cnt=0,i=0; i<n; i++) { 1103f7efa3c7SJed Brown ierr = ISLocalToGlobalMappingGetSize(ltogs[i],&m);CHKERRQ(ierr); 1104f7efa3c7SJed Brown cnt += m; 1105f7efa3c7SJed Brown } 1106f7efa3c7SJed Brown ierr = PetscMalloc(cnt*sizeof(PetscInt),&idx);CHKERRQ(ierr); 1107f7efa3c7SJed Brown for (cnt=0,i=0; i<n; i++) { 1108f7efa3c7SJed Brown const PetscInt *subidx; 1109f7efa3c7SJed Brown ierr = ISLocalToGlobalMappingGetSize(ltogs[i],&m);CHKERRQ(ierr); 1110f7efa3c7SJed Brown ierr = ISLocalToGlobalMappingGetIndices(ltogs[i],&subidx);CHKERRQ(ierr); 1111f7efa3c7SJed Brown ierr = PetscMemcpy(&idx[cnt],subidx,m*sizeof(PetscInt));CHKERRQ(ierr); 1112f7efa3c7SJed Brown ierr = ISLocalToGlobalMappingRestoreIndices(ltogs[i],&subidx);CHKERRQ(ierr); 1113f7efa3c7SJed Brown cnt += m; 1114f7efa3c7SJed Brown } 1115f7efa3c7SJed Brown ierr = ISLocalToGlobalMappingCreate(comm,cnt,idx,PETSC_OWN_POINTER,ltogcat);CHKERRQ(ierr); 1116f7efa3c7SJed Brown PetscFunctionReturn(0); 1117f7efa3c7SJed Brown } 1118